Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52856.t1 | XP_013460772.1 | 94.8 | 496 | 24 | 2 | 1 | 496 | 1 | 494 | 1.70E-275 | 958 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52856.t1 | Q54ND5 | 24.5 | 457 | 277 | 9 | 58 | 465 | 102 | 539 | 1.9e-33 | 145.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52856.t1 | A0A072UZE6 | 94.8 | 496 | 24 | 2 | 1 | 496 | 1 | 494 | 1.2e-275 | 958.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050156 | MS.gene52856 | 0.804528 | 2.07E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene52856 | 0.802377 | 5.77E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene52856 | 0.80379 | 2.95E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene52856 | 0.809741 | 1.63E-50 | -1.69E-46 |
| MS.gene050787 | MS.gene52856 | 0.820175 | 7.88E-53 | -1.69E-46 |
| MS.gene051860 | MS.gene52856 | 0.808979 | 2.37E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene52856 | 0.805755 | 1.15E-49 | -1.69E-46 |
| MS.gene058792 | MS.gene52856 | 0.97951 | 3.97E-148 | -1.69E-46 |
| MS.gene058793 | MS.gene52856 | 0.974965 | 4.30E-139 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52856.t1 | MTR_3g071580 | 94.758 | 496 | 24 | 2 | 1 | 496 | 1 | 494 | 0.0 | 938 |
| MS.gene52856.t1 | MTR_3g071580 | 94.501 | 491 | 25 | 2 | 1 | 491 | 1 | 489 | 0.0 | 925 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52856.t1 | AT1G09870 | 64.549 | 488 | 157 | 4 | 2 | 484 | 3 | 479 | 0.0 | 665 |
Find 114 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCCATTTGAAGTATTTA+AGG | 0.128114 | 3.3:-1433165 | MS.gene52856:intron |
| GCTCCAAAGGTTTCTCCTTC+TGG | 0.189619 | 3.3:+1433537 | None:intergenic |
| TCTGCATTAGTTGGGCGATA+TGG | 0.221007 | 3.3:-1435475 | MS.gene52856:CDS |
| AACAAACTAAAATTCATCTT+TGG | 0.224993 | 3.3:+1432887 | None:intergenic |
| CCTTGGCAAGGAAGGCTTAA+AGG | 0.244002 | 3.3:-1436739 | MS.gene52856:CDS |
| AGAGTTCCGTCTTGGTTAAA+TGG | 0.267555 | 3.3:-1436772 | MS.gene52856:CDS |
| ACCACAAGGTTTAAATGAAT+TGG | 0.278023 | 3.3:+1437594 | None:intergenic |
| CTCACCTGAGTTGCCTTTAT+AGG | 0.288772 | 3.3:+1436610 | None:intergenic |
| GGTTACGATAGTAGGATTTC+AGG | 0.291373 | 3.3:-1435555 | MS.gene52856:intron |
| ACAAACTAAAATTCATCTTT+GGG | 0.293290 | 3.3:+1432888 | None:intergenic |
| ATCCATGGAGCAAGCTATTA+AGG | 0.308600 | 3.3:-1434728 | MS.gene52856:CDS |
| TCCTTAAGTCTATCAACTTC+GGG | 0.308723 | 3.3:+1435520 | None:intergenic |
| AAAAGAGCGGAAATTGTCTT+TGG | 0.330350 | 3.3:-1436797 | MS.gene52856:CDS |
| GGATAATTTGTCAGCTCAAC+TGG | 0.331316 | 3.3:-1436839 | MS.gene52856:CDS |
| TCAGCTAGTGCTGTGGCATT+TGG | 0.337150 | 3.3:-1436310 | MS.gene52856:CDS |
| TAGACTTAAGGAACCTATCT+TGG | 0.351543 | 3.3:-1435509 | MS.gene52856:CDS |
| GCGTTTATTCTAAAGGGTTA+TGG | 0.369605 | 3.3:-1434802 | MS.gene52856:CDS |
| CTGCATTAGTTGGGCGATAT+GGG | 0.371019 | 3.3:-1435474 | MS.gene52856:CDS |
| GGTTTATTTCTTGAAGAGTC+TGG | 0.374217 | 3.3:-1433676 | MS.gene52856:intron |
| AGCCTCCACAGAAAAGAAAA+TGG | 0.377131 | 3.3:-1433505 | MS.gene52856:CDS |
| GTGTATATAGATTACATTGC+TGG | 0.383792 | 3.3:-1434845 | MS.gene52856:intron |
| AATTATACGAACTTGGAATC+AGG | 0.387815 | 3.3:-1436687 | MS.gene52856:CDS |
| TTCAGTGGCAATGGAACTCT+TGG | 0.391689 | 3.3:-1436277 | MS.gene52856:CDS |
| TCCAGACATATATCCTATAA+AGG | 0.391852 | 3.3:-1436623 | MS.gene52856:CDS |
| GAGATTACATCTGCATTAGT+TGG | 0.394671 | 3.3:-1435484 | MS.gene52856:CDS |
| AAATCACTAAATTATAGAAT+GGG | 0.395225 | 3.3:-1434778 | MS.gene52856:CDS |
| GACACCTTAAATACTTCAAA+TGG | 0.399416 | 3.3:+1433161 | None:intergenic |
| GTCCCATTCTCATGTCTGCT+TGG | 0.401122 | 3.3:-1433697 | MS.gene52856:CDS |
| AAGCTTACAGGCATTGGAAT+GGG | 0.405845 | 3.3:+1433368 | None:intergenic |
| TTGGAGGCGTTTATTCTAAA+GGG | 0.408639 | 3.3:-1434808 | MS.gene52856:CDS |
| CTTGGAGGCGTTTATTCTAA+AGG | 0.419192 | 3.3:-1434809 | MS.gene52856:CDS |
| AACATCTCTCCACCGTCTCC+AGG | 0.430519 | 3.3:-1437750 | MS.gene52856:intron |
| TCTCTGGTTCTTATGTAAAC+AGG | 0.431034 | 3.3:-1435422 | MS.gene52856:intron |
| TTCCTTAAGTCTATCAACTT+CGG | 0.436190 | 3.3:+1435519 | None:intergenic |
| CTGTATAGTTGTCCTGCGTC+AGG | 0.438844 | 3.3:-1433437 | MS.gene52856:CDS |
| CTCAACTGGATGTTCTTGTA+AGG | 0.439096 | 3.3:-1436825 | MS.gene52856:CDS |
| GGCAATGGAACTCTTGGAAC+TGG | 0.447948 | 3.3:-1436271 | MS.gene52856:CDS |
| TAAATCACTAAATTATAGAA+TGG | 0.454360 | 3.3:-1434779 | MS.gene52856:CDS |
| CACAGCACTAGCTGATGCTC+GGG | 0.455439 | 3.3:+1436318 | None:intergenic |
| CTACAAAAGCTTACAGGCAT+TGG | 0.460567 | 3.3:+1433362 | None:intergenic |
| GGAAATCTCCTTGGCAAGGA+AGG | 0.464112 | 3.3:-1436747 | MS.gene52856:CDS |
| CTGACGCAGGACAACTATAC+AGG | 0.473699 | 3.3:+1433438 | None:intergenic |
| CTCCGACAAAGAAAAGGATA+AGG | 0.475675 | 3.3:-1436867 | MS.gene52856:CDS |
| AATCCAGAAGGAGAAACCTT+TGG | 0.476956 | 3.3:-1433540 | MS.gene52856:CDS |
| ATCATGCTCCGCGAGGGCTT+CGG | 0.477499 | 3.3:+1432957 | None:intergenic |
| ACCCGAAGTTGATAGACTTA+AGG | 0.479122 | 3.3:-1435521 | MS.gene52856:CDS |
| TTCCGTCTTGGTTAAATGGA+TGG | 0.483104 | 3.3:-1436768 | MS.gene52856:CDS |
| ATAACAGGAAGCATCCTTGT+TGG | 0.485453 | 3.3:-1435255 | MS.gene52856:intron |
| TTGGAATCAGGATTAGAGAA+AGG | 0.488890 | 3.3:-1436675 | MS.gene52856:CDS |
| TAGTGCTGTGGCATTTGGAA+TGG | 0.489961 | 3.3:-1436305 | MS.gene52856:CDS |
| GGCTTTGGAGGTAGCTCCAA+AGG | 0.490471 | 3.3:+1433524 | None:intergenic |
| AGTGCTGTGGCATTTGGAAT+GGG | 0.491271 | 3.3:-1436304 | MS.gene52856:CDS |
| CTCGTTCTCCGACAAAGAAA+AGG | 0.491299 | 3.3:-1436873 | MS.gene52856:CDS |
| CTTTGGAGAGAGTTCCGTCT+TGG | 0.491832 | 3.3:-1436780 | MS.gene52856:CDS |
| AAAGAAAAGGATAAGGGAGT+TGG | 0.492650 | 3.3:-1436860 | MS.gene52856:CDS |
| TATTCACTGCAGGGTTGTCA+TGG | 0.494935 | 3.3:-1433197 | MS.gene52856:intron |
| AGATTACATCTGCATTAGTT+GGG | 0.499233 | 3.3:-1435483 | MS.gene52856:CDS |
| TCCACAGAAAAGAAAATGGC+GGG | 0.499586 | 3.3:-1433501 | MS.gene52856:CDS |
| TCCAATTCATTTAAACCTTG+TGG | 0.499872 | 3.3:-1437595 | MS.gene52856:intron |
| GCCTTTATAGGATATATGTC+TGG | 0.504217 | 3.3:+1436622 | None:intergenic |
| AACCAAGCAGACATGAGAAT+GGG | 0.505960 | 3.3:+1433695 | None:intergenic |
| CAGTTTCTGCATGAGCAAAC+CGG | 0.507648 | 3.3:+1433722 | None:intergenic |
| GGCATATTACATCATCTCTC+TGG | 0.508982 | 3.3:-1435438 | MS.gene52856:CDS |
| TGAAGATGTTGTTCAATCCA+TGG | 0.509427 | 3.3:-1434743 | MS.gene52856:CDS |
| AGCATGTTGTTACCAGCAAA+AGG | 0.511702 | 3.3:+1433464 | None:intergenic |
| GATGTAATCTCATCCAAGAT+AGG | 0.518769 | 3.3:+1435496 | None:intergenic |
| AAACCAAGCAGACATGAGAA+TGG | 0.520129 | 3.3:+1433694 | None:intergenic |
| CCACAGCACTAGCTGATGCT+CGG | 0.526889 | 3.3:+1436317 | None:intergenic |
| GAGGAAGAATTATACGAACT+TGG | 0.526932 | 3.3:-1436694 | MS.gene52856:CDS |
| GGGTTGTCACCTTTCCCTAG+TGG | 0.528747 | 3.3:+1432909 | None:intergenic |
| TGGAATATCATGCTCCGCGA+GGG | 0.537062 | 3.3:+1432951 | None:intergenic |
| CAAGCTATTAAGGCTGAAGA+AGG | 0.544813 | 3.3:-1434718 | MS.gene52856:intron |
| TTCCATCCATTTAACCAAGA+CGG | 0.547637 | 3.3:+1436766 | None:intergenic |
| CCTTTAAGCCTTCCTTGCCA+AGG | 0.550309 | 3.3:+1436739 | None:intergenic |
| TGAACAACATCTTCAAGTAA+TGG | 0.551000 | 3.3:+1434751 | None:intergenic |
| AAATCTCAGCAAGATGTCAC+TGG | 0.554670 | 3.3:+1436210 | None:intergenic |
| TAAATGGATGGAAATCTCCT+TGG | 0.554988 | 3.3:-1436756 | MS.gene52856:CDS |
| ACTACAAAAGTACCTCCAAT+GGG | 0.557015 | 3.3:+1435201 | None:intergenic |
| AAAGCTTACAGGCATTGGAA+TGG | 0.558496 | 3.3:+1433367 | None:intergenic |
| TCCGACAAAGAAAAGGATAA+GGG | 0.559478 | 3.3:-1436866 | MS.gene52856:CDS |
| AGCCTTAATAGCTTGCTCCA+TGG | 0.564475 | 3.3:+1434726 | None:intergenic |
| ATATCCTATAAAGGCAACTC+AGG | 0.566710 | 3.3:-1436614 | MS.gene52856:intron |
| TTGAGAAATGTAAAATCGAA+AGG | 0.568997 | 3.3:+1437806 | None:intergenic |
| GACTACAAAAGTACCTCCAA+TGG | 0.570542 | 3.3:+1435200 | None:intergenic |
| GTTCCTTCTAAAATTCCTCA+AGG | 0.574019 | 3.3:-1437624 | MS.gene52856:CDS |
| TTACATTCCCAGGCAAGGCA+TGG | 0.576004 | 3.3:-1436898 | MS.gene52856:intron |
| TATAGATTACATTGCTGGAG+TGG | 0.578859 | 3.3:-1434840 | MS.gene52856:intron |
| GCTGGAGTGGACAGATGACT+TGG | 0.580590 | 3.3:-1434827 | MS.gene52856:CDS |
| TTATAGGATATATGTCTGGA+TGG | 0.582429 | 3.3:+1436626 | None:intergenic |
| TGATTGTTGTCATAACTACA+AGG | 0.582799 | 3.3:-1436185 | MS.gene52856:intron |
| CAAACTAAAATTCATCTTTG+GGG | 0.598005 | 3.3:+1432889 | None:intergenic |
| GGCGGTGAGCTAATTAAACT+AGG | 0.601575 | 3.3:-1436718 | MS.gene52856:CDS |
| TCAACTGGATGTTCTTGTAA+GGG | 0.604338 | 3.3:-1436824 | MS.gene52856:CDS |
| TGATATTCCAAATATTTCAG+TGG | 0.604907 | 3.3:-1432938 | MS.gene52856:CDS |
| GGATGGAAATCTCCTTGGCA+AGG | 0.610408 | 3.3:-1436751 | MS.gene52856:CDS |
| AATCACTAAATTATAGAATG+GGG | 0.619098 | 3.3:-1434777 | MS.gene52856:CDS |
| AGCAAGAGCCGAAGCCCTCG+CGG | 0.619488 | 3.3:-1432965 | MS.gene52856:CDS |
| GGAGTGGACAGATGACTTGG+AGG | 0.620597 | 3.3:-1434824 | MS.gene52856:CDS |
| AGCTTACAGGCATTGGAATG+GGG | 0.624158 | 3.3:+1433369 | None:intergenic |
| AGAGTTTGACAAAATCCAGA+AGG | 0.633058 | 3.3:-1433552 | MS.gene52856:CDS |
| CCGAGCATCAGCTAGTGCTG+TGG | 0.634420 | 3.3:-1436317 | MS.gene52856:CDS |
| TAATCCTCGTCAAACAAACT+CGG | 0.636648 | 3.3:+1436649 | None:intergenic |
| CTCCACAGAAAAGAAAATGG+CGG | 0.637496 | 3.3:-1433502 | MS.gene52856:CDS |
| TGAGCTAATTAAACTAGGAG+AGG | 0.639606 | 3.3:-1436713 | MS.gene52856:CDS |
| ACAGCACTAGCTGATGCTCG+GGG | 0.659608 | 3.3:+1436319 | None:intergenic |
| GTTTCCGAGTTTGTTTGACG+AGG | 0.659643 | 3.3:-1436653 | MS.gene52856:CDS |
| TGAATTGGAGTACATCCTTG+AGG | 0.660520 | 3.3:+1437609 | None:intergenic |
| TTGGAATATCATGCTCCGCG+AGG | 0.669168 | 3.3:+1432950 | None:intergenic |
| CCACAGAAAAGAAAATGGCG+GGG | 0.671932 | 3.3:-1433500 | MS.gene52856:CDS |
| TCATAGTCATGCTTCTGATG+AGG | 0.679963 | 3.3:+1433005 | None:intergenic |
| TTGTAAGGGATGTAAAAGAG+CGG | 0.687987 | 3.3:-1436810 | MS.gene52856:CDS |
| AAAATGGCGGGGTAGCAGTG+TGG | 0.701485 | 3.3:-1433489 | MS.gene52856:CDS |
| TTGATCAGTTATATCCAACA+AGG | 0.711218 | 3.3:+1435241 | None:intergenic |
| TGGCAAGGAAGGCTTAAAGG+CGG | 0.730530 | 3.3:-1436736 | MS.gene52856:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATATAACCATAAAAA+AGG | + | chr3.3:1435161-1435180 | None:intergenic | 10.0% |
| !! | AATAAAATTTAAAAAATGTC+AGG | - | chr3.3:1435616-1435635 | MS.gene52856:intron | 10.0% |
| !! | TAATTAATTATGAAATATGT+TGG | - | chr3.3:1433207-1433226 | MS.gene52856:intron | 10.0% |
| !! | TATTTAAATAATATTTACAG+AGG | + | chr3.3:1435600-1435619 | None:intergenic | 10.0% |
| !! | AAAGAAACTAAATTAGTAAA+AGG | - | chr3.3:1435709-1435728 | MS.gene52856:intron | 15.0% |
| !! | AAAGAAGATTAAAATCAATA+TGG | + | chr3.3:1436563-1436582 | None:intergenic | 15.0% |
| !! | AAATCACTAAATTATAGAAT+GGG | - | chr3.3:1435962-1435981 | MS.gene52856:intron | 15.0% |
| !! | AACATACATAAAATATAAGT+GGG | + | chr3.3:1433677-1433696 | None:intergenic | 15.0% |
| !! | AAGAAACTAAATTAGTAAAA+GGG | - | chr3.3:1435710-1435729 | MS.gene52856:intron | 15.0% |
| !! | GCAAATATGTATATAAATAT+AGG | + | chr3.3:1436090-1436109 | None:intergenic | 15.0% |
| !! | TAAATCACTAAATTATAGAA+TGG | - | chr3.3:1435961-1435980 | MS.gene52856:intron | 15.0% |
| !! | TAATCTATATACACATAATT+TGG | + | chr3.3:1435889-1435908 | None:intergenic | 15.0% |
| !! | TTATGGTTATATAATTTCTT+TGG | - | chr3.3:1435164-1435183 | MS.gene52856:intron | 15.0% |
| !!! | ATGTTGGTTATATATATAAT+AGG | - | chr3.3:1433223-1433242 | MS.gene52856:intron | 15.0% |
| !!! | TATTGATAGTTTAAACTATT+GGG | - | chr3.3:1433764-1433783 | MS.gene52856:intron | 15.0% |
| !!! | TATTTTATTTGTATTCCTTT+TGG | - | chr3.3:1436628-1436647 | MS.gene52856:CDS | 15.0% |
| !!! | TTATTGATAGTTTAAACTAT+TGG | - | chr3.3:1433763-1433782 | MS.gene52856:intron | 15.0% |
| !!! | TTCTCATTGTTTTAATTTAA+TGG | - | chr3.3:1436781-1436800 | MS.gene52856:CDS | 15.0% |
| !!! | TTTAGCATTTTTTAATATTG+AGG | - | chr3.3:1436048-1436067 | MS.gene52856:intron | 15.0% |
| !! | AACAATAACTTATATGCATT+TGG | + | chr3.3:1435753-1435772 | None:intergenic | 20.0% |
| !! | AACTATCAATAATAACAAGT+TGG | + | chr3.3:1433755-1433774 | None:intergenic | 20.0% |
| !! | AATCACTAAATTATAGAATG+GGG | - | chr3.3:1435963-1435982 | MS.gene52856:intron | 20.0% |
| !! | AATTCCAGTTAGTATATAAT+TGG | - | chr3.3:1436757-1436776 | MS.gene52856:CDS | 20.0% |
| !! | AATTTGTGATGATTTATAAC+AGG | - | chr3.3:1435470-1435489 | MS.gene52856:CDS | 20.0% |
| !! | AGAAACTAAATTAGTAAAAG+GGG | - | chr3.3:1435711-1435730 | MS.gene52856:intron | 20.0% |
| !! | ATATAATCATTTCAAAGTGT+TGG | + | chr3.3:1433317-1433336 | None:intergenic | 20.0% |
| !! | CAACATACATAAAATATAAG+TGG | + | chr3.3:1433678-1433697 | None:intergenic | 20.0% |
| !! | GAATAAAATTTATCACTGAA+AGG | + | chr3.3:1434813-1434832 | None:intergenic | 20.0% |
| !! | GACACTAATATTTATGAAAT+TGG | + | chr3.3:1434678-1434697 | None:intergenic | 20.0% |
| !! | GTAATATTAATTCTCCATAA+CGG | + | chr3.3:1436866-1436885 | None:intergenic | 20.0% |
| !! | TAAGTTTCAGAAATATCAAA+CGG | + | chr3.3:1434373-1434392 | None:intergenic | 20.0% |
| !! | TAATATTAATTCTCCATAAC+GGG | + | chr3.3:1436865-1436884 | None:intergenic | 20.0% |
| !! | TGTTATAAATCATCACAAAT+TGG | + | chr3.3:1435471-1435490 | None:intergenic | 20.0% |
| !! | TTTCATGCTTTATAAGAAAA+TGG | - | chr3.3:1436536-1436555 | MS.gene52856:intron | 20.0% |
| !!! | AACTATGCATTTTTTAATAG+CGG | - | chr3.3:1436671-1436690 | MS.gene52856:CDS | 20.0% |
| !!! | TATATTTTATGTATGTTGCT+TGG | - | chr3.3:1433680-1433699 | MS.gene52856:CDS | 20.0% |
| !!! | TTAAGAAGCATATTTACAAA+TGG | + | chr3.3:1434700-1434719 | None:intergenic | 20.0% |
| ! | AATATGAAGTGTGTTTAAAG+AGG | - | chr3.3:1435029-1435048 | MS.gene52856:intron | 25.0% |
| ! | ACAACCTTTATTGATGTTTA+TGG | - | chr3.3:1436831-1436850 | MS.gene52856:CDS | 25.0% |
| ! | ATAAAAACCTGTCATGTATT+AGG | + | chr3.3:1433578-1433597 | None:intergenic | 25.0% |
| ! | CAACCTTTATTGATGTTTAT+GGG | - | chr3.3:1436832-1436851 | MS.gene52856:CDS | 25.0% |
| ! | CATTACATTAGTGACAAATA+TGG | + | chr3.3:1434918-1434937 | None:intergenic | 25.0% |
| ! | TAAAAGAAGAAAAGAACACA+GGG | + | chr3.3:1435381-1435400 | None:intergenic | 25.0% |
| ! | TACATCTATGTTCTAACTAT+TGG | + | chr3.3:1433511-1433530 | None:intergenic | 25.0% |
| ! | TATATACATATTTGCTCTTC+AGG | - | chr3.3:1436095-1436114 | MS.gene52856:intron | 25.0% |
| ! | TATGTTAAATCTCCATCAAA+CGG | + | chr3.3:1434881-1434900 | None:intergenic | 25.0% |
| ! | TATTTGTCACTAATGTAATG+AGG | - | chr3.3:1434918-1434937 | MS.gene52856:intron | 25.0% |
| ! | TGATATTCCAAATATTTCAG+TGG | - | chr3.3:1437802-1437821 | MS.gene52856:CDS | 25.0% |
| ! | TGCATAGTTCAAGAAAATAT+AGG | + | chr3.3:1436660-1436679 | None:intergenic | 25.0% |
| ! | TGTAATCAGTTATCATATCA+AGG | + | chr3.3:1435690-1435709 | None:intergenic | 25.0% |
| ! | TTAAAAGAAGAAAAGAACAC+AGG | + | chr3.3:1435382-1435401 | None:intergenic | 25.0% |
| ! | TTACTAACTACTAACTTTAG+AGG | + | chr3.3:1436176-1436195 | None:intergenic | 25.0% |
| ! | TTATTGTGAATAGCTGAATT+TGG | - | chr3.3:1437443-1437462 | MS.gene52856:intron | 25.0% |
| ! | TTGAGAAATGTAAAATCGAA+AGG | + | chr3.3:1432937-1432956 | None:intergenic | 25.0% |
| !! | AAAGACTATTTTCACAAAGT+GGG | + | chr3.3:1433627-1433646 | None:intergenic | 25.0% |
| !! | ATTTTATGCAGTTGAAATGA+AGG | - | chr3.3:1433709-1433728 | MS.gene52856:CDS | 25.0% |
| !! | GTAATTTTCTCAACAATTGA+AGG | - | chr3.3:1433167-1433186 | MS.gene52856:CDS | 25.0% |
| !! | TAATACATGACAGGTTTTTA+TGG | - | chr3.3:1433577-1433596 | MS.gene52856:intron | 25.0% |
| !! | TGATTGTTAATTTTCTTCGT+AGG | - | chr3.3:1433057-1433076 | MS.gene52856:intron | 25.0% |
| !! | TTTTATGCAGTTGAAATGAA+GGG | - | chr3.3:1433710-1433729 | MS.gene52856:CDS | 25.0% |
| !! | TTTTATTCCATTTTGCTAGA+AGG | - | chr3.3:1434825-1434844 | MS.gene52856:CDS | 25.0% |
| !!! | ACTAATATTTTTTGAGGAGT+CGG | - | chr3.3:1434227-1434246 | MS.gene52856:intron | 25.0% |
| !!! | ATTATTTTGTGCAAAAGAGT+GGG | + | chr3.3:1437613-1437632 | None:intergenic | 25.0% |
| !!! | ATTGGCACTAATATTTTTTG+AGG | - | chr3.3:1434221-1434240 | MS.gene52856:intron | 25.0% |
| !!! | GATTTGCTCTTTTGAATTTT+TGG | - | chr3.3:1434180-1434199 | MS.gene52856:intron | 25.0% |
| !!! | TTATTTCTGGACCTTTTTTA+TGG | - | chr3.3:1435147-1435166 | MS.gene52856:intron | 25.0% |
| AAAAAATGGAAATGAGCCAA+AGG | + | chr3.3:1436947-1436966 | None:intergenic | 30.0% | |
| AAGTGAATTACTCACTTTAG+AGG | - | chr3.3:1436310-1436329 | MS.gene52856:CDS | 30.0% | |
| AATTATACGAACTTGGAATC+AGG | - | chr3.3:1434053-1434072 | MS.gene52856:intron | 30.0% | |
| AATTATCATACTCTTCCGTT+TGG | + | chr3.3:1433810-1433829 | None:intergenic | 30.0% | |
| ACCACAAGGTTTAAATGAAT+TGG | + | chr3.3:1433149-1433168 | None:intergenic | 30.0% | |
| ACTTCATATTCAACCAATGA+AGG | + | chr3.3:1435019-1435038 | None:intergenic | 30.0% | |
| AGATTACATCTGCATTAGTT+GGG | - | chr3.3:1435257-1435276 | MS.gene52856:intron | 30.0% | |
| ATAATCAATTACTAGTGTCG+TGG | - | chr3.3:1435410-1435429 | MS.gene52856:intron | 30.0% | |
| ATCATCACAAATTGGACAAT+TGG | + | chr3.3:1435463-1435482 | None:intergenic | 30.0% | |
| ATCATTGTGCAGGATTAATT+TGG | - | chr3.3:1437647-1437666 | MS.gene52856:CDS | 30.0% | |
| ATTTCTTTGGTTACGATAGT+AGG | - | chr3.3:1435177-1435196 | MS.gene52856:intron | 30.0% | |
| CAACCCATAAACATCAATAA+AGG | + | chr3.3:1436838-1436857 | None:intergenic | 30.0% | |
| CAGTTTGATCAAACTAGTAA+AGG | + | chr3.3:1436413-1436432 | None:intergenic | 30.0% | |
| CCAAAGATAAACCATAAAAC+TGG | + | chr3.3:1433554-1433573 | None:intergenic | 30.0% | |
| CTACAGGAGCAATAAAAAAA+TGG | + | chr3.3:1436961-1436980 | None:intergenic | 30.0% | |
| CTAGAAGGAAAAAATGAAGA+TGG | + | chr3.3:1434157-1434176 | None:intergenic | 30.0% | |
| GAAAAAGCCACTGAAATATT+TGG | + | chr3.3:1437812-1437831 | None:intergenic | 30.0% | |
| GAACATGACGACTTTAATAT+AGG | + | chr3.3:1436127-1436146 | None:intergenic | 30.0% | |
| GAAGCCAATTATATACTAAC+TGG | + | chr3.3:1436764-1436783 | None:intergenic | 30.0% | |
| GACACCTTAAATACTTCAAA+TGG | + | chr3.3:1437582-1437601 | None:intergenic | 30.0% | |
| GCAAAATTGTGATAGAATGT+TGG | + | chr3.3:1433021-1433040 | None:intergenic | 30.0% | |
| GCTATTCACAATAAAACCAT+TGG | + | chr3.3:1437437-1437456 | None:intergenic | 30.0% | |
| GTGTATATAGATTACATTGC+TGG | - | chr3.3:1435895-1435914 | MS.gene52856:intron | 30.0% | |
| TAATGTTGTAGAGACATTGT+TGG | - | chr3.3:1434578-1434597 | MS.gene52856:intron | 30.0% | |
| TAGTGTCTGTAGTTTATTTC+TGG | - | chr3.3:1435134-1435153 | MS.gene52856:intron | 30.0% | |
| TATATGACAATGTGAACCTT+TGG | - | chr3.3:1436928-1436947 | MS.gene52856:intron | 30.0% | |
| TCCAATTCATTTAAACCTTG+TGG | - | chr3.3:1433145-1433164 | MS.gene52856:intron | 30.0% | |
| TCCAGACATATATCCTATAA+AGG | - | chr3.3:1434117-1434136 | MS.gene52856:intron | 30.0% | |
| TCTTGAGTTACTTACTTGTT+TGG | - | chr3.3:1433337-1433356 | MS.gene52856:intron | 30.0% | |
| TGAACAACATCTTCAAGTAA+TGG | + | chr3.3:1435992-1436011 | None:intergenic | 30.0% | |
| TGATGTGATATGTGATCAAA+TGG | - | chr3.3:1435564-1435583 | MS.gene52856:intron | 30.0% | |
| TGATTGTTGTCATAACTACA+AGG | - | chr3.3:1434555-1434574 | MS.gene52856:intron | 30.0% | |
| TTATAGGATATATGTCTGGA+TGG | + | chr3.3:1434117-1434136 | None:intergenic | 30.0% | |
| TTATCTTGATGCATGTCAAT+TGG | - | chr3.3:1434203-1434222 | MS.gene52856:intron | 30.0% | |
| TTCCTTAAGTCTATCAACTT+CGG | + | chr3.3:1435224-1435243 | None:intergenic | 30.0% | |
| TTGATCAGTTATATCCAACA+AGG | + | chr3.3:1435502-1435521 | None:intergenic | 30.0% | |
| TTGTTGAGAAAATTACCACA+AGG | + | chr3.3:1433163-1433182 | None:intergenic | 30.0% | |
| TTTATCACTGAAAGGAACAT+AGG | + | chr3.3:1434805-1434824 | None:intergenic | 30.0% | |
| ! | AAATATAGGCTTTAGCCAAA+AGG | + | chr3.3:1436646-1436665 | None:intergenic | 30.0% |
| ! | ATTGGACATTTTGTGATCTT+CGG | - | chr3.3:1435099-1435118 | MS.gene52856:intron | 30.0% |
| ! | CAAAGACTATTTTCACAAAG+TGG | + | chr3.3:1433628-1433647 | None:intergenic | 30.0% |
| ! | CTGTCCATTTGAAGTATTTA+AGG | - | chr3.3:1437575-1437594 | MS.gene52856:intron | 30.0% |
| ! | GTTAATTTTCTTCGTAGGTA+CGG | - | chr3.3:1433062-1433081 | MS.gene52856:intron | 30.0% |
| ! | TCATTTTCTGCTTACAGTTT+AGG | + | chr3.3:1433376-1433395 | None:intergenic | 30.0% |
| !! | ATGTCAGAGTTATTTTCCAA+TGG | - | chr3.3:1437418-1437437 | MS.gene52856:intron | 30.0% |
| !! | CCAGTTTTATGGTTTATCTT+TGG | - | chr3.3:1433551-1433570 | MS.gene52856:CDS | 30.0% |
| !! | GATATGGGTTGAATTTTACA+AGG | - | chr3.3:1435281-1435300 | MS.gene52856:intron | 30.0% |
| !! | GATTATTTTGTGCAAAAGAG+TGG | + | chr3.3:1437614-1437633 | None:intergenic | 30.0% |
| !! | TTAGCTCTATTGATGTGAAT+TGG | - | chr3.3:1435081-1435100 | MS.gene52856:intron | 30.0% |
| !! | TTATTTTGTGCAAAAGAGTG+GGG | + | chr3.3:1437612-1437631 | None:intergenic | 30.0% |
| !!! | CATCTTCATTTTTTCCTTCT+AGG | - | chr3.3:1434155-1434174 | MS.gene52856:intron | 30.0% |
| !!! | CTAATATTTTTTGAGGAGTC+GGG | - | chr3.3:1434228-1434247 | MS.gene52856:intron | 30.0% |
| !!! | TGGTTTTATTGCAAAGTAGT+GGG | - | chr3.3:1437135-1437154 | MS.gene52856:intron | 30.0% |
| !!! | TTGGTTTTATTGCAAAGTAG+TGG | - | chr3.3:1437134-1437153 | MS.gene52856:intron | 30.0% |
| AAAAGAGCGGAAATTGTCTT+TGG | - | chr3.3:1433943-1433962 | MS.gene52856:intron | 35.0% | |
| AAAGAAAAGGATAAGGGAGT+TGG | - | chr3.3:1433880-1433899 | MS.gene52856:intron | 35.0% | |
| AAAGAGCAAATCTACCTAGA+AGG | + | chr3.3:1434172-1434191 | None:intergenic | 35.0% | |
| ACTTATGCATCTCTCTTATC+TGG | - | chr3.3:1434388-1434407 | MS.gene52856:intron | 35.0% | |
| AGAACACAGGGAAAATCAAA+AGG | + | chr3.3:1435369-1435388 | None:intergenic | 35.0% | |
| AGAGTTTGACAAAATCCAGA+AGG | - | chr3.3:1437188-1437207 | MS.gene52856:intron | 35.0% | |
| ATATCCTATAAAGGCAACTC+AGG | - | chr3.3:1434126-1434145 | MS.gene52856:intron | 35.0% | |
| ATCTCTCTTATCTGGCAAAT+AGG | - | chr3.3:1434396-1434415 | MS.gene52856:intron | 35.0% | |
| CAAGAACTACAAAAGCTTAC+AGG | + | chr3.3:1437387-1437406 | None:intergenic | 35.0% | |
| CATGCATAACAACTCATTAG+TGG | + | chr3.3:1436228-1436247 | None:intergenic | 35.0% | |
| CTTGTGTTAATAGAGGATGT+CGG | - | chr3.3:1433450-1433469 | MS.gene52856:CDS | 35.0% | |
| GAGATTACATCTGCATTAGT+TGG | - | chr3.3:1435256-1435275 | MS.gene52856:intron | 35.0% | |
| GAGGAAGAATTATACGAACT+TGG | - | chr3.3:1434046-1434065 | MS.gene52856:intron | 35.0% | |
| GATAGAATGTTGGAAAAACC+TGG | + | chr3.3:1433011-1433030 | None:intergenic | 35.0% | |
| GATGTAATCTCATCCAAGAT+AGG | + | chr3.3:1435247-1435266 | None:intergenic | 35.0% | |
| GATGTAGAGCAAGATTAAGA+AGG | - | chr3.3:1433525-1433544 | MS.gene52856:CDS | 35.0% | |
| GCACAAAATAATCATTGTGC+AGG | - | chr3.3:1437621-1437640 | MS.gene52856:CDS | 35.0% | |
| GCCTTTATAGGATATATGTC+TGG | + | chr3.3:1434121-1434140 | None:intergenic | 35.0% | |
| GTAGGATTTCAGGAAAAAGA+AGG | - | chr3.3:1435195-1435214 | MS.gene52856:intron | 35.0% | |
| GTGATCTTCGGTATTCTTAT+AGG | - | chr3.3:1435111-1435130 | MS.gene52856:intron | 35.0% | |
| GTTTGCATTGCTAATGCAAA+TGG | - | chr3.3:1433278-1433297 | MS.gene52856:intron | 35.0% | |
| TAAATGGATGGAAATCTCCT+TGG | - | chr3.3:1433984-1434003 | MS.gene52856:intron | 35.0% | |
| TAATCCTCGTCAAACAAACT+CGG | + | chr3.3:1434094-1434113 | None:intergenic | 35.0% | |
| TAATGTAATGAGGCCTTCAT+TGG | - | chr3.3:1434928-1434947 | MS.gene52856:intron | 35.0% | |
| TAGACTTAAGGAACCTATCT+TGG | - | chr3.3:1435231-1435250 | MS.gene52856:CDS | 35.0% | |
| TAGCTCTCTCACATATAAAC+AGG | - | chr3.3:1435798-1435817 | MS.gene52856:intron | 35.0% | |
| TATAGATTACATTGCTGGAG+TGG | - | chr3.3:1435900-1435919 | MS.gene52856:intron | 35.0% | |
| TATCAGAAATCCTCTTGTCT+GGG | + | chr3.3:1434607-1434626 | None:intergenic | 35.0% | |
| TCAACTGGATGTTCTTGTAA+GGG | - | chr3.3:1433916-1433935 | MS.gene52856:intron | 35.0% | |
| TCCGACAAAGAAAAGGATAA+GGG | - | chr3.3:1433874-1433893 | MS.gene52856:intron | 35.0% | |
| TCCTTAAGTCTATCAACTTC+GGG | + | chr3.3:1435223-1435242 | None:intergenic | 35.0% | |
| TGAAGATGTTGTTCAATCCA+TGG | - | chr3.3:1435997-1436016 | MS.gene52856:intron | 35.0% | |
| TGAGCTAATTAAACTAGGAG+AGG | - | chr3.3:1434027-1434046 | MS.gene52856:intron | 35.0% | |
| TGTTGTGATATGCTAACTGT+TGG | - | chr3.3:1436599-1436618 | MS.gene52856:intron | 35.0% | |
| TTCCATCCATTTAACCAAGA+CGG | + | chr3.3:1433977-1433996 | None:intergenic | 35.0% | |
| TTGGAATCAGGATTAGAGAA+AGG | - | chr3.3:1434065-1434084 | MS.gene52856:intron | 35.0% | |
| TTGTAAGGGATGTAAAAGAG+CGG | - | chr3.3:1433930-1433949 | MS.gene52856:intron | 35.0% | |
| TTGTGTTAATAGAGGATGTC+GGG | - | chr3.3:1433451-1433470 | MS.gene52856:CDS | 35.0% | |
| ! | CAATATTTTCCCAGCAGAAA+AGG | + | chr3.3:1434770-1434789 | None:intergenic | 35.0% |
| ! | CATCCTTGAGGAATTTTAGA+AGG | + | chr3.3:1433122-1433141 | None:intergenic | 35.0% |
| ! | GCGTTTATTCTAAAGGGTTA+TGG | - | chr3.3:1435938-1435957 | MS.gene52856:intron | 35.0% |
| ! | GGTTTATTTCTTGAAGAGTC+TGG | - | chr3.3:1437064-1437083 | MS.gene52856:intron | 35.0% |
| ! | TAAGAAGGATGCCAGTTTTA+TGG | - | chr3.3:1433540-1433559 | MS.gene52856:CDS | 35.0% |
| ! | TCCCTTATCCTTTTCTTTGT+CGG | + | chr3.3:1433878-1433897 | None:intergenic | 35.0% |
| ! | TTCATGTCTCAATTTTGCAG+CGG | + | chr3.3:1434346-1434365 | None:intergenic | 35.0% |
| ! | TTTCTGTGATTTTTCTCCAC+AGG | - | chr3.3:1437698-1437717 | MS.gene52856:intron | 35.0% |
| !! | ACTACAAAAGTACCTCCAAT+GGG | + | chr3.3:1435542-1435561 | None:intergenic | 35.0% |
| !! | GTTCCTTCTAAAATTCCTCA+AGG | - | chr3.3:1433116-1433135 | MS.gene52856:intron | 35.0% |
| !! | TCTCTGGTTCTTATGTAAAC+AGG | - | chr3.3:1435318-1435337 | MS.gene52856:intron | 35.0% |
| !! | TTGGAGGCGTTTATTCTAAA+GGG | - | chr3.3:1435932-1435951 | MS.gene52856:intron | 35.0% |
| !!! | ATGATTTGTTCTCCTTTTGG+AGG | - | chr3.3:1436893-1436912 | MS.gene52856:intron | 35.0% |
| AAACCAAGCAGACATGAGAA+TGG | + | chr3.3:1437049-1437068 | None:intergenic | 40.0% | |
| AAATCTCAGCAAGATGTCAC+TGG | + | chr3.3:1434533-1434552 | None:intergenic | 40.0% | |
| AACCAAGCAGACATGAGAAT+GGG | + | chr3.3:1437048-1437067 | None:intergenic | 40.0% | |
| AATCCAGAAGGAGAAACCTT+TGG | - | chr3.3:1437200-1437219 | MS.gene52856:intron | 40.0% | |
| AGAGTTCCGTCTTGGTTAAA+TGG | - | chr3.3:1433968-1433987 | MS.gene52856:intron | 40.0% | |
| AGCATGTTGTTACCAGCAAA+AGG | + | chr3.3:1437279-1437298 | None:intergenic | 40.0% | |
| AGCCTCCACAGAAAAGAAAA+TGG | - | chr3.3:1437235-1437254 | MS.gene52856:intron | 40.0% | |
| AGGGAAAATCAAAAGGAGCT+GGG | + | chr3.3:1435362-1435381 | None:intergenic | 40.0% | |
| ATCCATGGAGCAAGCTATTA+AGG | - | chr3.3:1436012-1436031 | MS.gene52856:intron | 40.0% | |
| ATGTTGGAAAAACCTGGAGA+CGG | + | chr3.3:1433005-1433024 | None:intergenic | 40.0% | |
| ATTTCTTGAAGAGTCTGGTG+AGG | - | chr3.3:1437069-1437088 | MS.gene52856:intron | 40.0% | |
| CAAGCTATTAAGGCTGAAGA+AGG | - | chr3.3:1436022-1436041 | MS.gene52856:intron | 40.0% | |
| CAGCACCATGCATATTTCAA+GGG | + | chr3.3:1436346-1436365 | None:intergenic | 40.0% | |
| CAGGTTCTGTGTTGAACTTA+TGG | - | chr3.3:1435817-1435836 | MS.gene52856:intron | 40.0% | |
| CATCACAACTCAACCAATGA+AGG | + | chr3.3:1434944-1434963 | None:intergenic | 40.0% | |
| CCTGTAGAAAAACATGTTCC+TGG | - | chr3.3:1436974-1436993 | MS.gene52856:intron | 40.0% | |
| CTACAAAAGCTTACAGGCAT+TGG | + | chr3.3:1437381-1437400 | None:intergenic | 40.0% | |
| CTCAACTGGATGTTCTTGTA+AGG | - | chr3.3:1433915-1433934 | MS.gene52856:intron | 40.0% | |
| CTCCACAGAAAAGAAAATGG+CGG | - | chr3.3:1437238-1437257 | MS.gene52856:intron | 40.0% | |
| CTCCGACAAAGAAAAGGATA+AGG | - | chr3.3:1433873-1433892 | MS.gene52856:intron | 40.0% | |
| CTTGTCCCTTGAAATATGCA+TGG | - | chr3.3:1436338-1436357 | MS.gene52856:intron | 40.0% | |
| CTTTGGACCTAATACATGAC+AGG | - | chr3.3:1433568-1433587 | MS.gene52856:intron | 40.0% | |
| GCGGCACTTCAATTTAATCA+TGG | + | chr3.3:1434327-1434346 | None:intergenic | 40.0% | |
| GGCATATTACATCATCTCTC+TGG | - | chr3.3:1435302-1435321 | MS.gene52856:intron | 40.0% | |
| GGGAAAATATTGAAGACCGT+GGG | - | chr3.3:1434778-1434797 | MS.gene52856:CDS | 40.0% | |
| GGTTACGATAGTAGGATTTC+AGG | - | chr3.3:1435185-1435204 | MS.gene52856:intron | 40.0% | |
| GTATCAGAAATCCTCTTGTC+TGG | + | chr3.3:1434608-1434627 | None:intergenic | 40.0% | |
| TAGTGCTATGTTACATTCCC+AGG | - | chr3.3:1433832-1433851 | MS.gene52856:intron | 40.0% | |
| TCATAGTCATGCTTCTGATG+AGG | + | chr3.3:1437738-1437757 | None:intergenic | 40.0% | |
| TCCACAGAAAAGAAAATGGC+GGG | - | chr3.3:1437239-1437258 | MS.gene52856:intron | 40.0% | |
| TCTATTAACACAAGTCAGCG+AGG | + | chr3.3:1433444-1433463 | None:intergenic | 40.0% | |
| TGAATTGGAGTACATCCTTG+AGG | + | chr3.3:1433134-1433153 | None:intergenic | 40.0% | |
| TGCAAGATACAACCTCCAAA+AGG | + | chr3.3:1436908-1436927 | None:intergenic | 40.0% | |
| TGGGAAAATATTGAAGACCG+TGG | - | chr3.3:1434777-1434796 | MS.gene52856:CDS | 40.0% | |
| TTAATAGAGGATGTCGGGTT+TGG | - | chr3.3:1433456-1433475 | MS.gene52856:CDS | 40.0% | |
| TTCCGTCTTGGTTAAATGGA+TGG | - | chr3.3:1433972-1433991 | MS.gene52856:intron | 40.0% | |
| ! | CCAGGAACATGTTTTTCTAC+AGG | + | chr3.3:1436977-1436996 | None:intergenic | 40.0% |
| ! | CTTCATTGGTTGAGTTGTGA+TGG | - | chr3.3:1434942-1434961 | MS.gene52856:intron | 40.0% |
| ! | GGATAATTTGTCAGCTCAAC+TGG | - | chr3.3:1433901-1433920 | MS.gene52856:intron | 40.0% |
| ! | TATGGGTTGAAATCCCGTTA+TGG | - | chr3.3:1436849-1436868 | MS.gene52856:CDS | 40.0% |
| ! | TATTTTCCCAGCAGAAAAGG+TGG | + | chr3.3:1434767-1434786 | None:intergenic | 40.0% |
| ! | TCGTTGTGTTATTCACTGCA+GGG | - | chr3.3:1437534-1437553 | MS.gene52856:intron | 40.0% |
| ! | TTCGTTGTGTTATTCACTGC+AGG | - | chr3.3:1437533-1437552 | MS.gene52856:intron | 40.0% |
| ! | TTTCTTTTCTGTGGAGGCTT+TGG | + | chr3.3:1437234-1437253 | None:intergenic | 40.0% |
| !! | AAAGCTTACAGGCATTGGAA+TGG | + | chr3.3:1437376-1437395 | None:intergenic | 40.0% |
| !! | AAGCTTACAGGCATTGGAAT+GGG | + | chr3.3:1437375-1437394 | None:intergenic | 40.0% |
| !! | ACCCGAAGTTGATAGACTTA+AGG | - | chr3.3:1435219-1435238 | MS.gene52856:CDS | 40.0% |
| !! | ATAACAGGAAGCATCCTTGT+TGG | - | chr3.3:1435485-1435504 | MS.gene52856:CDS | 40.0% |
| !! | CTTGGAGGCGTTTATTCTAA+AGG | - | chr3.3:1435931-1435950 | MS.gene52856:intron | 40.0% |
| !! | GAAAGCACCTTCTAGCAAAA+TGG | + | chr3.3:1434835-1434854 | None:intergenic | 40.0% |
| !! | GACTACAAAAGTACCTCCAA+TGG | + | chr3.3:1435543-1435562 | None:intergenic | 40.0% |
| !! | GCTTTGAAAAAGCAAGACTC+CGG | - | chr3.3:1436999-1437018 | MS.gene52856:intron | 40.0% |
| !! | TCGCTGACTTGTGTTAATAG+AGG | - | chr3.3:1433443-1433462 | MS.gene52856:CDS | 40.0% |
| !! | TGGCATTGATTGATCAATGC+AGG | - | chr3.3:1433597-1433616 | MS.gene52856:intron | 40.0% |
| !! | TTCAGTGGCTTTTTCCACTA+GGG | - | chr3.3:1437817-1437836 | MS.gene52856:CDS | 40.0% |
| !! | TTTCAGTGGCTTTTTCCACT+AGG | - | chr3.3:1437816-1437835 | MS.gene52856:CDS | 40.0% |
| !! | TTTGGAATGGGTCTTTTCAG+TGG | - | chr3.3:1434448-1434467 | MS.gene52856:intron | 40.0% |
| !!! | GGTGCAACTATTTTTTCCTG+TGG | + | chr3.3:1437717-1437736 | None:intergenic | 40.0% |
| CAGGGAAAATCAAAAGGAGC+TGG | + | chr3.3:1435363-1435382 | None:intergenic | 45.0% | |
| CAGTTTCTGCATGAGCAAAC+CGG | + | chr3.3:1437021-1437040 | None:intergenic | 45.0% | |
| CCACAGAAAAGAAAATGGCG+GGG | - | chr3.3:1437240-1437259 | MS.gene52856:intron | 45.0% | |
| CCAGCACCATGCATATTTCA+AGG | + | chr3.3:1436347-1436366 | None:intergenic | 45.0% | |
| CCTTGAAATATGCATGGTGC+TGG | - | chr3.3:1436344-1436363 | MS.gene52856:intron | 45.0% | |
| CTATGTTACATTCCCAGGCA+AGG | - | chr3.3:1433837-1433856 | MS.gene52856:intron | 45.0% | |
| CTCACCTGAGTTGCCTTTAT+AGG | + | chr3.3:1434133-1434152 | None:intergenic | 45.0% | |
| CTCGTTCTCCGACAAAGAAA+AGG | - | chr3.3:1433867-1433886 | MS.gene52856:intron | 45.0% | |
| CTGCATTAGTTGGGCGATAT+GGG | - | chr3.3:1435266-1435285 | MS.gene52856:intron | 45.0% | |
| GAGGAGTCAAGTTCGTCTTA+AGG | + | chr3.3:1436157-1436176 | None:intergenic | 45.0% | |
| GGCGGTGAGCTAATTAAACT+AGG | - | chr3.3:1434022-1434041 | MS.gene52856:intron | 45.0% | |
| GTGCAGGATAATCATTGTGC+AGG | - | chr3.3:1437637-1437656 | MS.gene52856:CDS | 45.0% | |
| TAGTGCTGTGGCATTTGGAA+TGG | - | chr3.3:1434435-1434454 | MS.gene52856:intron | 45.0% | |
| TATTCACTGCAGGGTTGTCA+TGG | - | chr3.3:1437543-1437562 | MS.gene52856:intron | 45.0% | |
| TCTGCATTAGTTGGGCGATA+TGG | - | chr3.3:1435265-1435284 | MS.gene52856:intron | 45.0% | |
| TGAAAGGAACATAGGACCCA+CGG | + | chr3.3:1434797-1434816 | None:intergenic | 45.0% | |
| TTCAGTGGCAATGGAACTCT+TGG | - | chr3.3:1434463-1434482 | MS.gene52856:intron | 45.0% | |
| ! | AGTGCTGTGGCATTTGGAAT+GGG | - | chr3.3:1434436-1434455 | MS.gene52856:intron | 45.0% |
| ! | ATGGGTCTTTTCAGTGGCAA+TGG | - | chr3.3:1434454-1434473 | MS.gene52856:intron | 45.0% |
| ! | CGAGCATGTTTTATCCCCTT+TGG | + | chr3.3:1434272-1434291 | None:intergenic | 45.0% |
| ! | GTGTAGTCTTTTCAGCCCAT+TGG | - | chr3.3:1435524-1435543 | MS.gene52856:CDS | 45.0% |
| ! | GTTTCCGAGTTTGTTTGACG+AGG | - | chr3.3:1434087-1434106 | MS.gene52856:intron | 45.0% |
| ! | GTTTTATCCCCTTTGGACCT+GGG | + | chr3.3:1434265-1434284 | None:intergenic | 45.0% |
| ! | TAGTCTTTTCAGCCCATTGG+AGG | - | chr3.3:1435527-1435546 | MS.gene52856:CDS | 45.0% |
| ! | TGTTTTATCCCCTTTGGACC+TGG | + | chr3.3:1434266-1434285 | None:intergenic | 45.0% |
| ! | TTGTCTGTCATGCCGTTTGA+TGG | - | chr3.3:1434866-1434885 | MS.gene52856:intron | 45.0% |
| !! | AGCCTTAATAGCTTGCTCCA+TGG | + | chr3.3:1436017-1436036 | None:intergenic | 45.0% |
| !! | AGCTTACAGGCATTGGAATG+GGG | + | chr3.3:1437374-1437393 | None:intergenic | 45.0% |
| !! | CGCCATTTTCTTTTCTGTGG+AGG | + | chr3.3:1437240-1437259 | None:intergenic | 45.0% |
| !! | TGGCTTTTTCCACTAGGGAA+AGG | - | chr3.3:1437822-1437841 | MS.gene52856:CDS | 45.0% |
| !! | TTGTTGGTTTCCCAGACAAG+AGG | - | chr3.3:1434594-1434613 | MS.gene52856:intron | 45.0% |
| !!! | CTTGCTTTTTCAAAGCTGCC+AGG | + | chr3.3:1436995-1437014 | None:intergenic | 45.0% |
| !!! | AATTTTATAAATTTCAATTT+TGG | - | chr3.3:1437115-1437134 | MS.gene52856:intron | 5.0% |
| CCTTGGCAAGGAAGGCTTAA+AGG | - | chr3.3:1434001-1434020 | MS.gene52856:intron | 50.0% | |
| CCTTTAAGCCTTCCTTGCCA+AGG | + | chr3.3:1434004-1434023 | None:intergenic | 50.0% | |
| CTAACCGCTTCTTGGCCAAA+CGG | - | chr3.3:1433792-1433811 | MS.gene52856:intron | 50.0% | |
| CTGACGCAGGACAACTATAC+AGG | + | chr3.3:1437305-1437324 | None:intergenic | 50.0% | |
| CTGTATAGTTGTCCTGCGTC+AGG | - | chr3.3:1437303-1437322 | MS.gene52856:intron | 50.0% | |
| GCTCCAAAGGTTTCTCCTTC+TGG | + | chr3.3:1437206-1437225 | None:intergenic | 50.0% | |
| GGAAATCTCCTTGGCAAGGA+AGG | - | chr3.3:1433993-1434012 | MS.gene52856:intron | 50.0% | |
| GGATGGAAATCTCCTTGGCA+AGG | - | chr3.3:1433989-1434008 | MS.gene52856:intron | 50.0% | |
| GGCAATGGAACTCTTGGAAC+TGG | - | chr3.3:1434469-1434488 | MS.gene52856:intron | 50.0% | |
| GTCCCATTCTCATGTCTGCT+TGG | - | chr3.3:1437043-1437062 | MS.gene52856:intron | 50.0% | |
| TCAGCTAGTGCTGTGGCATT+TGG | - | chr3.3:1434430-1434449 | MS.gene52856:intron | 50.0% | |
| TCTTCCGTTTGGCCAAGAAG+CGG | + | chr3.3:1433799-1433818 | None:intergenic | 50.0% | |
| TGGAATATCATGCTCCGCGA+GGG | + | chr3.3:1437792-1437811 | None:intergenic | 50.0% | |
| TGGCAAGGAAGGCTTAAAGG+CGG | - | chr3.3:1434004-1434023 | MS.gene52856:intron | 50.0% | |
| TTACATTCCCAGGCAAGGCA+TGG | - | chr3.3:1433842-1433861 | MS.gene52856:intron | 50.0% | |
| TTGGAAAAACCTGGAGACGG+TGG | + | chr3.3:1433002-1433021 | None:intergenic | 50.0% | |
| TTGGAATATCATGCTCCGCG+AGG | + | chr3.3:1437793-1437812 | None:intergenic | 50.0% | |
| TTTGAGGAGTCGGGAAACAC+TGG | - | chr3.3:1434237-1434256 | MS.gene52856:intron | 50.0% | |
| TTTGGCCAAGAAGCGGTTAG+TGG | + | chr3.3:1433792-1433811 | None:intergenic | 50.0% | |
| ! | AGAGGATGTCGGGTTTGGTA+AGG | - | chr3.3:1433461-1433480 | MS.gene52856:CDS | 50.0% |
| ! | CACATGCCACCTTTTCTGCT+GGG | - | chr3.3:1434758-1434777 | MS.gene52856:CDS | 50.0% |
| ! | CTTTGGAGAGAGTTCCGTCT+TGG | - | chr3.3:1433960-1433979 | MS.gene52856:intron | 50.0% |
| ! | GATGTCGGGTTTGGTAAGGA+GGG | - | chr3.3:1433465-1433484 | MS.gene52856:CDS | 50.0% |
| !! | CCCCGCCATTTTCTTTTCTG+TGG | + | chr3.3:1437243-1437262 | None:intergenic | 50.0% |
| !! | CTTTTCTGTGGAGGCTTTGG+AGG | + | chr3.3:1437231-1437250 | None:intergenic | 50.0% |
| !!! | CTTTTAGCTTTGCCTGACGC+AGG | + | chr3.3:1437318-1437337 | None:intergenic | 50.0% |
| AACATCTCTCCACCGTCTCC+AGG | - | chr3.3:1432990-1433009 | MS.gene52856:CDS | 55.0% | |
| AACGAGTTCCATGCCTTGCC+TGG | + | chr3.3:1433853-1433872 | None:intergenic | 55.0% | |
| ACAGCACTAGCTGATGCTCG+GGG | + | chr3.3:1434424-1434443 | None:intergenic | 55.0% | |
| ACGAGTTCCATGCCTTGCCT+GGG | + | chr3.3:1433852-1433871 | None:intergenic | 55.0% | |
| CACAGCACTAGCTGATGCTC+GGG | + | chr3.3:1434425-1434444 | None:intergenic | 55.0% | |
| CCACAGCACTAGCTGATGCT+CGG | + | chr3.3:1434426-1434445 | None:intergenic | 55.0% | |
| CCAGCAGAAAAGGTGGCATG+TGG | + | chr3.3:1434760-1434779 | None:intergenic | 55.0% | |
| GCTGGAGTGGACAGATGACT+TGG | - | chr3.3:1435913-1435932 | MS.gene52856:intron | 55.0% | |
| GGGTTGTCACCTTTCCCTAG+TGG | + | chr3.3:1437834-1437853 | None:intergenic | 55.0% | |
| GGTGGCATGTGGAGATTGTG+TGG | + | chr3.3:1434749-1434768 | None:intergenic | 55.0% | |
| ! | AAAATGGCGGGGTAGCAGTG+TGG | - | chr3.3:1437251-1437270 | MS.gene52856:intron | 55.0% |
| ! | ACTGGTTCCCAGGTCCAAAG+GGG | - | chr3.3:1434255-1434274 | MS.gene52856:intron | 55.0% |
| ! | AGCAGTGTGGCTCCTTTTGC+TGG | - | chr3.3:1437264-1437283 | MS.gene52856:intron | 55.0% |
| ! | CCACATGCCACCTTTTCTGC+TGG | - | chr3.3:1434757-1434776 | MS.gene52856:CDS | 55.0% |
| ! | GGAGTGGACAGATGACTTGG+AGG | - | chr3.3:1435916-1435935 | MS.gene52856:intron | 55.0% |
| ! | GGATGTCGGGTTTGGTAAGG+AGG | - | chr3.3:1433464-1433483 | MS.gene52856:CDS | 55.0% |
| !! | ACACTGGTTCCCAGGTCCAA+AGG | - | chr3.3:1434253-1434272 | MS.gene52856:intron | 55.0% |
| !! | CACTGGTTCCCAGGTCCAAA+GGG | - | chr3.3:1434254-1434273 | MS.gene52856:intron | 55.0% |
| !! | GGCTTTGGAGGTAGCTCCAA+AGG | + | chr3.3:1437219-1437238 | None:intergenic | 55.0% |
| ATCATGCTCCGCGAGGGCTT+CGG | + | chr3.3:1437786-1437805 | None:intergenic | 60.0% | |
| CCGAGCATCAGCTAGTGCTG+TGG | - | chr3.3:1434423-1434442 | MS.gene52856:intron | 60.0% | |
| !! | GTCGGGAAACACTGGTTCCC+AGG | - | chr3.3:1434245-1434264 | MS.gene52856:intron | 60.0% |
| AGCAAGAGCCGAAGCCCTCG+CGG | - | chr3.3:1437775-1437794 | MS.gene52856:CDS | 65.0% | |
| GGGCGCCACTAACCGCTTCT+TGG | - | chr3.3:1433784-1433803 | MS.gene52856:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 1432893 | 1437869 | 1432893 | ID=MS.gene52856 |
| chr3.3 | mRNA | 1432893 | 1437869 | 1432893 | ID=MS.gene52856.t1;Parent=MS.gene52856 |
| chr3.3 | exon | 1437751 | 1437869 | 1437751 | ID=MS.gene52856.t1.exon1;Parent=MS.gene52856.t1 |
| chr3.3 | CDS | 1437751 | 1437869 | 1437751 | ID=cds.MS.gene52856.t1;Parent=MS.gene52856.t1 |
| chr3.3 | exon | 1437596 | 1437683 | 1437596 | ID=MS.gene52856.t1.exon2;Parent=MS.gene52856.t1 |
| chr3.3 | CDS | 1437596 | 1437683 | 1437596 | ID=cds.MS.gene52856.t1;Parent=MS.gene52856.t1 |
| chr3.3 | exon | 1436615 | 1436908 | 1436615 | ID=MS.gene52856.t1.exon3;Parent=MS.gene52856.t1 |
| chr3.3 | CDS | 1436615 | 1436908 | 1436615 | ID=cds.MS.gene52856.t1;Parent=MS.gene52856.t1 |
| chr3.3 | exon | 1436186 | 1436344 | 1436186 | ID=MS.gene52856.t1.exon4;Parent=MS.gene52856.t1 |
| chr3.3 | CDS | 1436186 | 1436344 | 1436186 | ID=cds.MS.gene52856.t1;Parent=MS.gene52856.t1 |
| chr3.3 | exon | 1435423 | 1435563 | 1435423 | ID=MS.gene52856.t1.exon5;Parent=MS.gene52856.t1 |
| chr3.3 | CDS | 1435423 | 1435563 | 1435423 | ID=cds.MS.gene52856.t1;Parent=MS.gene52856.t1 |
| chr3.3 | exon | 1435214 | 1435270 | 1435214 | ID=MS.gene52856.t1.exon6;Parent=MS.gene52856.t1 |
| chr3.3 | CDS | 1435214 | 1435270 | 1435214 | ID=cds.MS.gene52856.t1;Parent=MS.gene52856.t1 |
| chr3.3 | exon | 1434719 | 1434857 | 1434719 | ID=MS.gene52856.t1.exon7;Parent=MS.gene52856.t1 |
| chr3.3 | CDS | 1434719 | 1434857 | 1434719 | ID=cds.MS.gene52856.t1;Parent=MS.gene52856.t1 |
| chr3.3 | exon | 1433677 | 1433781 | 1433677 | ID=MS.gene52856.t1.exon8;Parent=MS.gene52856.t1 |
| chr3.3 | CDS | 1433677 | 1433781 | 1433677 | ID=cds.MS.gene52856.t1;Parent=MS.gene52856.t1 |
| chr3.3 | exon | 1433376 | 1433572 | 1433376 | ID=MS.gene52856.t1.exon9;Parent=MS.gene52856.t1 |
| chr3.3 | CDS | 1433376 | 1433572 | 1433376 | ID=cds.MS.gene52856.t1;Parent=MS.gene52856.t1 |
| chr3.3 | exon | 1433166 | 1433207 | 1433166 | ID=MS.gene52856.t1.exon10;Parent=MS.gene52856.t1 |
| chr3.3 | CDS | 1433166 | 1433207 | 1433166 | ID=cds.MS.gene52856.t1;Parent=MS.gene52856.t1 |
| chr3.3 | exon | 1432893 | 1433042 | 1432893 | ID=MS.gene52856.t1.exon11;Parent=MS.gene52856.t1 |
| chr3.3 | CDS | 1432893 | 1433042 | 1432893 | ID=cds.MS.gene52856.t1;Parent=MS.gene52856.t1 |
| Gene Sequence |
| Protein sequence |
