Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53011.t1 | XP_003590763.1 | 92.5 | 402 | 30 | 0 | 1 | 402 | 101 | 502 | 1.40E-209 | 738.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53011.t1 | Q9SS87 | 32.7 | 410 | 234 | 12 | 9 | 381 | 116 | 520 | 4.6e-49 | 196.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53011.t1 | E2FKJ5 | 92.5 | 402 | 30 | 0 | 1 | 402 | 101 | 502 | 9.8e-210 | 738.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053074 | MS.gene53011 | 0.811742 | 6.01E-51 | -1.69E-46 |
| MS.gene05456 | MS.gene53011 | 0.806469 | 8.10E-50 | -1.69E-46 |
| MS.gene05468 | MS.gene53011 | 0.808519 | 2.98E-50 | -1.69E-46 |
| MS.gene055359 | MS.gene53011 | 0.82883 | 7.23E-55 | -1.69E-46 |
| MS.gene055846 | MS.gene53011 | 0.84697 | 1.55E-59 | -1.69E-46 |
| MS.gene058168 | MS.gene53011 | 0.803275 | 3.77E-49 | -1.69E-46 |
| MS.gene059124 | MS.gene53011 | 0.833222 | 6.04E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53011.t1 | MTR_1g074990 | 92.537 | 402 | 30 | 0 | 1 | 402 | 101 | 502 | 0.0 | 753 |
| MS.gene53011.t1 | MTR_1g075095 | 81.841 | 402 | 73 | 0 | 1 | 402 | 103 | 504 | 0.0 | 671 |
| MS.gene53011.t1 | MTR_1g075030 | 80.597 | 402 | 78 | 0 | 1 | 402 | 103 | 504 | 0.0 | 662 |
| MS.gene53011.t1 | MTR_1g075230 | 78.109 | 402 | 88 | 0 | 1 | 402 | 101 | 502 | 0.0 | 617 |
| MS.gene53011.t1 | MTR_1g074950 | 57.672 | 378 | 157 | 3 | 1 | 377 | 102 | 477 | 3.70e-150 | 441 |
| MS.gene53011.t1 | MTR_1g040360 | 39.037 | 374 | 213 | 3 | 1 | 365 | 106 | 473 | 1.53e-88 | 283 |
| MS.gene53011.t1 | MTR_3g075450 | 36.082 | 388 | 229 | 8 | 1 | 372 | 108 | 492 | 7.26e-64 | 217 |
| MS.gene53011.t1 | MTR_7g032660 | 35.969 | 392 | 227 | 10 | 11 | 381 | 118 | 506 | 5.95e-63 | 215 |
| MS.gene53011.t1 | MTR_8g089660 | 35.443 | 395 | 227 | 12 | 1 | 372 | 101 | 490 | 8.48e-60 | 206 |
| MS.gene53011.t1 | MTR_1g075153 | 32.520 | 369 | 217 | 7 | 12 | 366 | 108 | 458 | 9.59e-54 | 189 |
| MS.gene53011.t1 | MTR_1g075180 | 32.703 | 370 | 219 | 8 | 7 | 365 | 80 | 430 | 8.45e-53 | 186 |
| MS.gene53011.t1 | MTR_1g075170 | 30.691 | 391 | 237 | 8 | 9 | 381 | 109 | 483 | 7.64e-52 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53011.t1 | AT3G01680 | 33.504 | 391 | 210 | 12 | 9 | 359 | 116 | 496 | 5.76e-55 | 194 |
| MS.gene53011.t1 | AT3G01670 | 27.005 | 374 | 245 | 10 | 14 | 372 | 237 | 597 | 1.79e-30 | 124 |
| MS.gene53011.t1 | AT3G01670 | 27.005 | 374 | 245 | 10 | 14 | 372 | 261 | 621 | 2.05e-30 | 124 |
| MS.gene53011.t1 | AT1G67790 | 25.693 | 397 | 259 | 11 | 1 | 372 | 84 | 469 | 3.01e-28 | 117 |
Find 87 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTGAGTATGGAGATTTC+TGG | 0.121043 | 1.1:+56122825 | MS.gene53011:CDS |
| TTCTTTATATGATCATAAAT+TGG | 0.139133 | 1.1:-56124429 | None:intergenic |
| GGAAATTATGGAAGTGTTTA+AGG | 0.152492 | 1.1:+56124160 | MS.gene53011:CDS |
| AAAACATCGCAATGAAATTT+TGG | 0.167607 | 1.1:+56122940 | MS.gene53011:CDS |
| TATGTACTTGATACCTTTAA+TGG | 0.197622 | 1.1:-56124574 | None:intergenic |
| CATTGATTCTTCTTTGGATT+TGG | 0.201689 | 1.1:-56124718 | None:intergenic |
| CATCACTTTGCACCCATTAA+AGG | 0.204242 | 1.1:+56124561 | MS.gene53011:CDS |
| AATTCCCAGTTGATGTATAT+TGG | 0.204655 | 1.1:+56123080 | MS.gene53011:CDS |
| ACATTGATATAAAGATTAAA+TGG | 0.204759 | 1.1:+56124778 | MS.gene53011:CDS |
| TTGTGTCATTGATTCTTCTT+TGG | 0.239627 | 1.1:-56124724 | None:intergenic |
| AGGCAGAATTTATCTCATTT+TGG | 0.249523 | 1.1:+56123910 | MS.gene53011:CDS |
| CTTGATTATGCCTAATGATT+TGG | 0.255438 | 1.1:-56122882 | None:intergenic |
| TCAAACCCCGACGGAAATTA+TGG | 0.258203 | 1.1:+56124148 | MS.gene53011:CDS |
| CCATCATAGATGGGAGCTTT+TGG | 0.260268 | 1.1:-56124206 | None:intergenic |
| ATTCCATATGATTCAAGTTT+GGG | 0.287868 | 1.1:+56124674 | MS.gene53011:CDS |
| TCAAAATTGAGATGTCTTCT+TGG | 0.293163 | 1.1:-56124404 | None:intergenic |
| CATTCCATATGATTCAAGTT+TGG | 0.299165 | 1.1:+56124673 | MS.gene53011:CDS |
| TCCAGCTCTTGCACCAGCTT+TGG | 0.314260 | 1.1:+56123054 | MS.gene53011:CDS |
| ATTCCCAGTTGATGTATATT+GGG | 0.322317 | 1.1:+56123081 | MS.gene53011:CDS |
| CTCCCCAAACTTGAATCATA+TGG | 0.346723 | 1.1:-56124677 | None:intergenic |
| ATAACCCAATATACATCAAC+TGG | 0.359445 | 1.1:-56123085 | None:intergenic |
| AAAACCTGTCAAACTATTCA+TGG | 0.362097 | 1.1:+56122768 | MS.gene53011:CDS |
| ATTCAAGTTTGGGGAGTAAA+GGG | 0.363993 | 1.1:+56124684 | MS.gene53011:CDS |
| TCTTCTTTGGATTTGGAGTA+AGG | 0.371960 | 1.1:-56124711 | None:intergenic |
| TCTTTATATGATCATAAATT+GGG | 0.380456 | 1.1:-56124428 | None:intergenic |
| TTTAGTCGAACCATCATAGA+TGG | 0.384861 | 1.1:-56124216 | None:intergenic |
| ATGTACTTGATACCTTTAAT+GGG | 0.385849 | 1.1:-56124573 | None:intergenic |
| TATGATCATATAAAGAAAAC+TGG | 0.388913 | 1.1:+56124435 | MS.gene53011:CDS |
| AGATTAAATGGGTACGTATT+CGG | 0.402548 | 1.1:+56124790 | MS.gene53011:CDS |
| TAAAGGTATCAAGTACATAA+AGG | 0.437070 | 1.1:+56124578 | MS.gene53011:CDS |
| GAACCACTTGCCAAATCATT+AGG | 0.438307 | 1.1:+56122872 | MS.gene53011:CDS |
| TGGCAAGTGGTTCTGTTGGT+TGG | 0.443588 | 1.1:-56122862 | None:intergenic |
| GATTCAAGTTTGGGGAGTAA+AGG | 0.451419 | 1.1:+56124683 | MS.gene53011:CDS |
| GTTCTTGTTCATTTCAACTC+TGG | 0.451654 | 1.1:+56124374 | MS.gene53011:CDS |
| TCATTCCATTCCTCCACAAT+GGG | 0.453843 | 1.1:-56124483 | None:intergenic |
| GGACTCGACACAAGAAATAA+AGG | 0.453859 | 1.1:-56124624 | None:intergenic |
| CTTTGAAGTCAAAGATGCCT+TGG | 0.456421 | 1.1:+56124529 | MS.gene53011:CDS |
| GGAGCTCAACAATTTGATCA+AGG | 0.463664 | 1.1:+56122961 | MS.gene53011:CDS |
| TCCAAAGCTGGTGCAAGAGC+TGG | 0.468376 | 1.1:-56123055 | None:intergenic |
| AACTATTCATGGGTTGCAAA+AGG | 0.472460 | 1.1:+56122779 | MS.gene53011:CDS |
| CATTGAAATCATCATTGAGT+TGG | 0.474539 | 1.1:+56122997 | MS.gene53011:CDS |
| CAACCCATGAATAGTTTGAC+AGG | 0.478125 | 1.1:-56122772 | None:intergenic |
| CATTGATATAAAGATTAAAT+GGG | 0.479358 | 1.1:+56124779 | MS.gene53011:CDS |
| TTGTAAGCTATTTCCTCACC+TGG | 0.482226 | 1.1:-56122725 | None:intergenic |
| TTATATCAATGTCAGCCAGC+AGG | 0.486824 | 1.1:-56124767 | None:intergenic |
| ACAATTTGATCAAGGCAACT+TGG | 0.492049 | 1.1:+56122969 | MS.gene53011:CDS |
| TCACAATGCACTATACAGAT+TGG | 0.496814 | 1.1:+56123976 | MS.gene53011:CDS |
| ACACTTCCATAATTTCCGTC+GGG | 0.516308 | 1.1:-56124154 | None:intergenic |
| CCAAAAGCTCCCATCTATGA+TGG | 0.519285 | 1.1:+56124206 | MS.gene53011:CDS |
| CAGAGTATAACAAGTTACTC+AGG | 0.520550 | 1.1:+56124117 | MS.gene53011:CDS |
| ACTGGGAATTGTTCCAAAGC+TGG | 0.521352 | 1.1:-56123067 | None:intergenic |
| CAATGACACAAGAATTAATG+TGG | 0.525892 | 1.1:+56124736 | MS.gene53011:CDS |
| ATCATTCCATTCCTCCACAA+TGG | 0.531780 | 1.1:-56124484 | None:intergenic |
| AATGTGGGTTGATTCCCTGC+TGG | 0.532892 | 1.1:+56124752 | MS.gene53011:CDS |
| CTGAGCAACAATTGCAACAA+TGG | 0.536652 | 1.1:-56123113 | None:intergenic |
| ATGCCTAATGATTTGGCAAG+TGG | 0.539047 | 1.1:-56122875 | None:intergenic |
| GATTTGGCAAGTGGTTCTGT+TGG | 0.544476 | 1.1:-56122866 | None:intergenic |
| CAGATGTCATGCAAGGCACC+AGG | 0.546738 | 1.1:+56122707 | None:intergenic |
| AACACTTCCATAATTTCCGT+CGG | 0.557817 | 1.1:-56124155 | None:intergenic |
| ACATCATAATCAGCAAATTG+AGG | 0.559555 | 1.1:+56123944 | MS.gene53011:CDS |
| GGGTTCCCATTGTGGAGGAA+TGG | 0.565612 | 1.1:+56124478 | MS.gene53011:CDS |
| CTTCTTTGGATTTGGAGTAA+GGG | 0.567493 | 1.1:-56124710 | None:intergenic |
| TATATCAATGTCAGCCAGCA+GGG | 0.567784 | 1.1:-56124766 | None:intergenic |
| AAACCTGTCAAACTATTCAT+GGG | 0.575469 | 1.1:+56122769 | MS.gene53011:CDS |
| GAACCCACACAATCTTGTGT+TGG | 0.580807 | 1.1:-56124461 | None:intergenic |
| GCCTCAGGCTTCGAAAGTTG+AGG | 0.585790 | 1.1:-56122911 | None:intergenic |
| TGATGTAGAATCTTTCCTTG+TGG | 0.585970 | 1.1:-56124645 | None:intergenic |
| TGATGGTTCGACTAAAACAC+TGG | 0.587238 | 1.1:+56124223 | MS.gene53011:CDS |
| TTAGTCGAACCATCATAGAT+GGG | 0.591512 | 1.1:-56124215 | None:intergenic |
| GCCAGAAATCTCCATACTCA+AGG | 0.592198 | 1.1:-56122826 | None:intergenic |
| GATTGTGTGGGTTCCCATTG+TGG | 0.593856 | 1.1:+56124470 | MS.gene53011:CDS |
| TCCTCAACTTTCGAAGCCTG+AGG | 0.596055 | 1.1:+56122910 | MS.gene53011:CDS |
| GAAGCCAACACAAGATTGTG+TGG | 0.598027 | 1.1:+56124457 | MS.gene53011:CDS |
| GTCATGCAAGGCACCAGGTG+AGG | 0.600067 | 1.1:+56122712 | MS.gene53011:CDS |
| CAACTCGCGTCATGACATCA+AGG | 0.608552 | 1.1:+56123027 | MS.gene53011:CDS |
| TTCCATATGATTCAAGTTTG+GGG | 0.613604 | 1.1:+56124675 | MS.gene53011:CDS |
| CACTTCCATAATTTCCGTCG+GGG | 0.623012 | 1.1:-56124153 | None:intergenic |
| TTTCTTGTGTCGAGTCCACA+AGG | 0.624806 | 1.1:+56124630 | MS.gene53011:CDS |
| AATGACACAAGAATTAATGT+GGG | 0.631951 | 1.1:+56124737 | MS.gene53011:CDS |
| CCAGAAATCTCCATACTCAA+GGG | 0.637724 | 1.1:-56122825 | None:intergenic |
| AGGTATCAAGTACATAAAGG+AGG | 0.656067 | 1.1:+56124581 | MS.gene53011:CDS |
| ATGATGGCAGATGTCATGCA+AGG | 0.660192 | 1.1:+56122700 | None:intergenic |
| AAGTGATGCAAAACATACCA+AGG | 0.663117 | 1.1:-56124546 | None:intergenic |
| TAACCCAATATACATCAACT+GGG | 0.665391 | 1.1:-56123084 | None:intergenic |
| AAGCCAACACAAGATTGTGT+GGG | 0.670390 | 1.1:+56124458 | MS.gene53011:CDS |
| TGTGTGGGTTCCCATTGTGG+AGG | 0.687282 | 1.1:+56124473 | MS.gene53011:CDS |
| GAAGCTCTTTCAAACCCCGA+CGG | 0.688404 | 1.1:+56124139 | MS.gene53011:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATATTATTTTTTTA+AGG | - | chr1.1:56123474-56123493 | None:intergenic | 0.0% |
| !! | AAAAATTGTAAAAAGAAATT+CGG | + | chr1.1:56123607-56123626 | MS.gene53011:intron | 10.0% |
| !!! | ATATGTTTTTATAATTAAAC+AGG | + | chr1.1:56124320-56124339 | MS.gene53011:intron | 10.0% |
| !! | AAAATTGTAAAAAGAAATTC+GGG | + | chr1.1:56123608-56123627 | MS.gene53011:intron | 15.0% |
| !! | ACATTGATATAAAGATTAAA+TGG | + | chr1.1:56124778-56124797 | MS.gene53011:CDS | 15.0% |
| !! | CATTGATATAAAGATTAAAT+GGG | + | chr1.1:56124779-56124798 | MS.gene53011:CDS | 15.0% |
| !! | TAAATAATTTCCATCAATAT+GGG | - | chr1.1:56124082-56124101 | None:intergenic | 15.0% |
| !! | TCAATAACTTCATTAAATTA+AGG | + | chr1.1:56123253-56123272 | MS.gene53011:intron | 15.0% |
| !! | TCTTTATATGATCATAAATT+GGG | - | chr1.1:56124431-56124450 | None:intergenic | 15.0% |
| !! | TTAAATAATTTCCATCAATA+TGG | - | chr1.1:56124083-56124102 | None:intergenic | 15.0% |
| !! | TTCTTTATATGATCATAAAT+TGG | - | chr1.1:56124432-56124451 | None:intergenic | 15.0% |
| !!! | ATATCTTAATTTAGTTTCAT+TGG | + | chr1.1:56124258-56124277 | MS.gene53011:intron | 15.0% |
| !! | ACTTGATTATAAACAAAACA+AGG | - | chr1.1:56123218-56123237 | None:intergenic | 20.0% |
| !! | TATGATCATATAAAGAAAAC+TGG | + | chr1.1:56124435-56124454 | MS.gene53011:CDS | 20.0% |
| !!! | AGTTACAATTTTTTTTTTCC+AGG | + | chr1.1:56123881-56123900 | MS.gene53011:intron | 20.0% |
| !!! | CTGAAAAAACTGAAATTTTT+CGG | + | chr1.1:56123581-56123600 | MS.gene53011:intron | 20.0% |
| !!! | CTGGAAAAAAAAAATTTTGA+AGG | + | chr1.1:56123637-56123656 | MS.gene53011:intron | 20.0% |
| !!! | GTTACAATTTTTTTTTTCCA+GGG | + | chr1.1:56123882-56123901 | MS.gene53011:intron | 20.0% |
| !!! | TGTTTAAGGTTTTAATTTTC+TGG | + | chr1.1:56124174-56124193 | MS.gene53011:CDS | 20.0% |
| ! | AAGGAAAAAAAAAATAAGCC+AGG | + | chr1.1:56123656-56123675 | MS.gene53011:intron | 25.0% |
| ! | AATGACACAAGAATTAATGT+GGG | + | chr1.1:56124737-56124756 | MS.gene53011:CDS | 25.0% |
| ! | AGGAAAAAAAAAATAAGCCA+GGG | + | chr1.1:56123657-56123676 | MS.gene53011:intron | 25.0% |
| ! | ATGTACTTGATACCTTTAAT+GGG | - | chr1.1:56124576-56124595 | None:intergenic | 25.0% |
| ! | CAATTTACAAAAAATGGCAT+GGG | + | chr1.1:56123416-56123435 | MS.gene53011:intron | 25.0% |
| ! | GGAAGAAAATACTTCAATTT+GGG | - | chr1.1:56124061-56124080 | None:intergenic | 25.0% |
| ! | TAACTGATTAAACTTTGCAA+GGG | + | chr1.1:56123758-56123777 | MS.gene53011:intron | 25.0% |
| ! | TATGTACTTGATACCTTTAA+TGG | - | chr1.1:56124577-56124596 | None:intergenic | 25.0% |
| ! | TGTTTAAGTATGTACAAAGT+TGG | + | chr1.1:56124286-56124305 | MS.gene53011:intron | 25.0% |
| ! | TTAACTGATTAAACTTTGCA+AGG | + | chr1.1:56123757-56123776 | MS.gene53011:intron | 25.0% |
| ! | TTAAGGAAAAAAATAAGCCA+GGG | - | chr1.1:56123457-56123476 | None:intergenic | 25.0% |
| ! | TTTAAGGAAAAAAATAAGCC+AGG | - | chr1.1:56123458-56123477 | None:intergenic | 25.0% |
| !! | AAAACATCGCAATGAAATTT+TGG | + | chr1.1:56122940-56122959 | MS.gene53011:CDS | 25.0% |
| !! | ATTCCATATGATTCAAGTTT+GGG | + | chr1.1:56124674-56124693 | MS.gene53011:CDS | 25.0% |
| !!! | AATAGTTTGACAGGTTTTTT+AGG | - | chr1.1:56122766-56122785 | None:intergenic | 25.0% |
| !!! | TAAAGGTATCAAGTACATAA+AGG | + | chr1.1:56124578-56124597 | MS.gene53011:CDS | 25.0% |
| AAAAAAAGATTAGCGATTGC+AGG | + | chr1.1:56123784-56123803 | MS.gene53011:intron | 30.0% | |
| AAAAAAGATTAGCGATTGCA+GGG | + | chr1.1:56123785-56123804 | MS.gene53011:intron | 30.0% | |
| AAAACCTGTCAAACTATTCA+TGG | + | chr1.1:56122768-56122787 | MS.gene53011:CDS | 30.0% | |
| AAACCTGTCAAACTATTCAT+GGG | + | chr1.1:56122769-56122788 | MS.gene53011:CDS | 30.0% | |
| AAAGAAATTCGGGAAAAATC+TGG | + | chr1.1:56123618-56123637 | MS.gene53011:intron | 30.0% | |
| ACATCATAATCAGCAAATTG+AGG | + | chr1.1:56123944-56123963 | MS.gene53011:CDS | 30.0% | |
| AGATTAAATGGGTACGTATT+CGG | + | chr1.1:56124790-56124809 | MS.gene53011:CDS | 30.0% | |
| ATAACCCAATATACATCAAC+TGG | - | chr1.1:56123088-56123107 | None:intergenic | 30.0% | |
| CAATGACACAAGAATTAATG+TGG | + | chr1.1:56124736-56124755 | MS.gene53011:CDS | 30.0% | |
| CAATTTACCAAAAATGGCAT+GGG | - | chr1.1:56123698-56123717 | None:intergenic | 30.0% | |
| CATTGAAATCATCATTGAGT+TGG | + | chr1.1:56122997-56123016 | MS.gene53011:CDS | 30.0% | |
| CGTCAGCAATTTACAAAAAA+TGG | + | chr1.1:56123410-56123429 | MS.gene53011:intron | 30.0% | |
| CTTGATTATGCCTAATGATT+TGG | - | chr1.1:56122885-56122904 | None:intergenic | 30.0% | |
| GCAATTTACAAAAAATGGCA+TGG | + | chr1.1:56123415-56123434 | MS.gene53011:intron | 30.0% | |
| GGAAAAAAAAAATAAGCCAG+GGG | + | chr1.1:56123658-56123677 | MS.gene53011:intron | 30.0% | |
| GGGAAGAAAATACTTCAATT+TGG | - | chr1.1:56124062-56124081 | None:intergenic | 30.0% | |
| TAACCCAATATACATCAACT+GGG | - | chr1.1:56123087-56123106 | None:intergenic | 30.0% | |
| TAACTGATTAAACTTTGCAG+AGG | - | chr1.1:56123356-56123375 | None:intergenic | 30.0% | |
| TAAGGAAAAAAATAAGCCAG+GGG | - | chr1.1:56123456-56123475 | None:intergenic | 30.0% | |
| TCAAAATTGAGATGTCTTCT+TGG | - | chr1.1:56124407-56124426 | None:intergenic | 30.0% | |
| ! | AATTCCCAGTTGATGTATAT+TGG | + | chr1.1:56123080-56123099 | MS.gene53011:CDS | 30.0% |
| ! | AGGCAGAATTTATCTCATTT+TGG | + | chr1.1:56123910-56123929 | MS.gene53011:CDS | 30.0% |
| ! | ATTCCCAGTTGATGTATATT+GGG | + | chr1.1:56123081-56123100 | MS.gene53011:CDS | 30.0% |
| ! | CATTCCATATGATTCAAGTT+TGG | + | chr1.1:56124673-56124692 | MS.gene53011:CDS | 30.0% |
| ! | GATTATAGCTTGACACATTT+TGG | + | chr1.1:56124000-56124019 | MS.gene53011:intron | 30.0% |
| ! | GTATTTTCTTCCCATATTGA+TGG | + | chr1.1:56124069-56124088 | MS.gene53011:intron | 30.0% |
| ! | TTCCATATGATTCAAGTTTG+GGG | + | chr1.1:56124675-56124694 | MS.gene53011:CDS | 30.0% |
| !! | CATTGATTCTTCTTTGGATT+TGG | - | chr1.1:56124721-56124740 | None:intergenic | 30.0% |
| !! | GGAAATTATGGAAGTGTTTA+AGG | + | chr1.1:56124160-56124179 | MS.gene53011:CDS | 30.0% |
| !! | TTGTGTCATTGATTCTTCTT+TGG | - | chr1.1:56124727-56124746 | None:intergenic | 30.0% |
| !!! | TTTTTTGTAAATTGCTGACG+TGG | - | chr1.1:56123410-56123429 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTCCAGGGATAAG+AGG | + | chr1.1:56123890-56123909 | MS.gene53011:intron | 30.0% |
| AACACTTCCATAATTTCCGT+CGG | - | chr1.1:56124158-56124177 | None:intergenic | 35.0% | |
| AAGTGATGCAAAACATACCA+AGG | - | chr1.1:56124549-56124568 | None:intergenic | 35.0% | |
| ACAATTTGATCAAGGCAACT+TGG | + | chr1.1:56122969-56122988 | MS.gene53011:CDS | 35.0% | |
| AGGTATCAAGTACATAAAGG+AGG | + | chr1.1:56124581-56124600 | MS.gene53011:CDS | 35.0% | |
| CAGAGTATAACAAGTTACTC+AGG | + | chr1.1:56124117-56124136 | MS.gene53011:CDS | 35.0% | |
| CGTCAGCAATTTACCAAAAA+TGG | - | chr1.1:56123704-56123723 | None:intergenic | 35.0% | |
| CTTTGCAGAGGCAAAAAAAA+AGG | - | chr1.1:56123344-56123363 | None:intergenic | 35.0% | |
| GCAATTTACCAAAAATGGCA+TGG | - | chr1.1:56123699-56123718 | None:intergenic | 35.0% | |
| GTTCTTGTTCATTTCAACTC+TGG | + | chr1.1:56124374-56124393 | MS.gene53011:CDS | 35.0% | |
| TCACAATGCACTATACAGAT+TGG | + | chr1.1:56123976-56123995 | MS.gene53011:CDS | 35.0% | |
| TGATGTAGAATCTTTCCTTG+TGG | - | chr1.1:56124648-56124667 | None:intergenic | 35.0% | |
| TTAGTCGAACCATCATAGAT+GGG | - | chr1.1:56124218-56124237 | None:intergenic | 35.0% | |
| TTTAGTCGAACCATCATAGA+TGG | - | chr1.1:56124219-56124238 | None:intergenic | 35.0% | |
| ! | AAAAAAGGATTAGCGATTGC+AGG | - | chr1.1:56123329-56123348 | None:intergenic | 35.0% |
| ! | AAAAAGGATTAGCGATTGCA+GGG | - | chr1.1:56123328-56123347 | None:intergenic | 35.0% |
| ! | AACTATTCATGGGTTGCAAA+AGG | + | chr1.1:56122779-56122798 | MS.gene53011:CDS | 35.0% |
| ! | ATTCAAGTTTGGGGAGTAAA+GGG | + | chr1.1:56124684-56124703 | MS.gene53011:CDS | 35.0% |
| ! | CTTCTTTGGATTTGGAGTAA+GGG | - | chr1.1:56124713-56124732 | None:intergenic | 35.0% |
| ! | TCTTCTTTGGATTTGGAGTA+AGG | - | chr1.1:56124714-56124733 | None:intergenic | 35.0% |
| !! | TATCGAAGTGCTGAAAAAGA+AGG | + | chr1.1:56124347-56124366 | MS.gene53011:CDS | 35.0% |
| !! | TTTTTGGTAAATTGCTGACG+TGG | + | chr1.1:56123704-56123723 | MS.gene53011:intron | 35.0% |
| AAGCCAACACAAGATTGTGT+GGG | + | chr1.1:56124458-56124477 | MS.gene53011:CDS | 40.0% | |
| ACACTTCCATAATTTCCGTC+GGG | - | chr1.1:56124157-56124176 | None:intergenic | 40.0% | |
| ATCATTCCATTCCTCCACAA+TGG | - | chr1.1:56124487-56124506 | None:intergenic | 40.0% | |
| CAACCCATGAATAGTTTGAC+AGG | - | chr1.1:56122775-56122794 | None:intergenic | 40.0% | |
| CATCACTTTGCACCCATTAA+AGG | + | chr1.1:56124561-56124580 | MS.gene53011:CDS | 40.0% | |
| CCAGAAATCTCCATACTCAA+GGG | - | chr1.1:56122828-56122847 | None:intergenic | 40.0% | |
| CTCCCCAAACTTGAATCATA+TGG | - | chr1.1:56124680-56124699 | None:intergenic | 40.0% | |
| CTGAGCAACAATTGCAACAA+TGG | - | chr1.1:56123116-56123135 | None:intergenic | 40.0% | |
| GAACCACTTGCCAAATCATT+AGG | + | chr1.1:56122872-56122891 | MS.gene53011:CDS | 40.0% | |
| GGACTCGACACAAGAAATAA+AGG | - | chr1.1:56124627-56124646 | None:intergenic | 40.0% | |
| GGAGCTCAACAATTTGATCA+AGG | + | chr1.1:56122961-56122980 | MS.gene53011:CDS | 40.0% | |
| GTTATTCGTCCCTGCAAATA+GGG | - | chr1.1:56123828-56123847 | None:intergenic | 40.0% | |
| TAAATTCTGCCTCTTATCCC+TGG | - | chr1.1:56123902-56123921 | None:intergenic | 40.0% | |
| TATATCAATGTCAGCCAGCA+GGG | - | chr1.1:56124769-56124788 | None:intergenic | 40.0% | |
| TCATTCCATTCCTCCACAAT+GGG | - | chr1.1:56124486-56124505 | None:intergenic | 40.0% | |
| TGATGGTTCGACTAAAACAC+TGG | + | chr1.1:56124223-56124242 | MS.gene53011:CDS | 40.0% | |
| TGTTATTCGTCCCTGCAAAT+AGG | - | chr1.1:56123829-56123848 | None:intergenic | 40.0% | |
| TTAAACGACCCCTATTTGCA+GGG | - | chr1.1:56123297-56123316 | None:intergenic | 40.0% | |
| TTATATCAATGTCAGCCAGC+AGG | - | chr1.1:56124770-56124789 | None:intergenic | 40.0% | |
| TTATTCGTCCCTGCAAATAG+GGG | - | chr1.1:56123827-56123846 | None:intergenic | 40.0% | |
| TTTAAACGACCCCTATTTGC+AGG | - | chr1.1:56123298-56123317 | None:intergenic | 40.0% | |
| ! | ATGCCTAATGATTTGGCAAG+TGG | - | chr1.1:56122878-56122897 | None:intergenic | 40.0% |
| ! | GATTCAAGTTTGGGGAGTAA+AGG | + | chr1.1:56124683-56124702 | MS.gene53011:CDS | 40.0% |
| ! | TTGTAAGCTATTTCCTCACC+TGG | - | chr1.1:56122728-56122747 | None:intergenic | 40.0% |
| !! | AGCACTGATGTGATACATCA+TGG | + | chr1.1:56123177-56123196 | MS.gene53011:intron | 40.0% |
| !! | CTTTGAAGTCAAAGATGCCT+TGG | + | chr1.1:56124529-56124548 | MS.gene53011:CDS | 40.0% |
| !!! | CGATGTTTTTTCAATGCCTC+AGG | - | chr1.1:56122929-56122948 | None:intergenic | 40.0% |
| !!! | GTCAATTCCCATGCCATTTT+TGG | + | chr1.1:56123688-56123707 | MS.gene53011:intron | 40.0% |
| ACTGGGAATTGTTCCAAAGC+TGG | - | chr1.1:56123070-56123089 | None:intergenic | 45.0% | |
| CACTTCCATAATTTCCGTCG+GGG | - | chr1.1:56124156-56124175 | None:intergenic | 45.0% | |
| CCAAAAGCTCCCATCTATGA+TGG | + | chr1.1:56124206-56124225 | MS.gene53011:CDS | 45.0% | |
| CCCTTGAGTATGGAGATTTC+TGG | + | chr1.1:56122825-56122844 | MS.gene53011:CDS | 45.0% | |
| GAACCCACACAATCTTGTGT+TGG | - | chr1.1:56124464-56124483 | None:intergenic | 45.0% | |
| GAAGCCAACACAAGATTGTG+TGG | + | chr1.1:56124457-56124476 | MS.gene53011:CDS | 45.0% | |
| GCAGTGATTAACTGGGTCAA+AGG | + | chr1.1:56123726-56123745 | MS.gene53011:intron | 45.0% | |
| GCAGTGATTAACTGGGTCAA+AGG | - | chr1.1:56123745-56123726 | None:intergenic | 45.0% | |
| GCCAGAAATCTCCATACTCA+AGG | - | chr1.1:56122829-56122848 | None:intergenic | 45.0% | |
| GGAATTGACGAAAATACCCC+TGG | + | chr1.1:56123437-56123456 | MS.gene53011:intron | 45.0% | |
| GGAATTGACGAAAATACCCC+TGG | - | chr1.1:56123456-56123437 | None:intergenic | 45.0% | |
| GTGATTCGTCCCTGCAAATA+GGG | + | chr1.1:56123285-56123304 | MS.gene53011:intron | 45.0% | |
| TCAAACCCCGACGGAAATTA+TGG | + | chr1.1:56124148-56124167 | MS.gene53011:CDS | 45.0% | |
| TGACGTGGCAGTGATTAACT+GGG | + | chr1.1:56123719-56123738 | MS.gene53011:intron | 45.0% | |
| TGACGTGGCAGTGATTAACT+GGG | - | chr1.1:56123738-56123719 | None:intergenic | 45.0% | |
| TGATTCGTCCCTGCAAATAG+GGG | + | chr1.1:56123286-56123305 | MS.gene53011:intron | 45.0% | |
| TGTGATTCGTCCCTGCAAAT+AGG | + | chr1.1:56123284-56123303 | MS.gene53011:intron | 45.0% | |
| TTAAGCGACCCCTATTTGCA+GGG | + | chr1.1:56123816-56123835 | MS.gene53011:intron | 45.0% | |
| TTTAAGCGACCCCTATTTGC+AGG | + | chr1.1:56123815-56123834 | MS.gene53011:intron | 45.0% | |
| TTTCTTGTGTCGAGTCCACA+AGG | + | chr1.1:56124630-56124649 | MS.gene53011:CDS | 45.0% | |
| ! | CCATCATAGATGGGAGCTTT+TGG | - | chr1.1:56124209-56124228 | None:intergenic | 45.0% |
| ! | GATTTGGCAAGTGGTTCTGT+TGG | - | chr1.1:56122869-56122888 | None:intergenic | 45.0% |
| !! | TCTGCTTTTGCCCTTGAGTA+TGG | + | chr1.1:56122815-56122834 | MS.gene53011:CDS | 45.0% |
| !! | TTAAAAATCATAAAAAATTT+CGG | + | chr1.1:56123535-56123554 | MS.gene53011:intron | 5.0% |
| CAACTCGCGTCATGACATCA+AGG | + | chr1.1:56123027-56123046 | MS.gene53011:CDS | 50.0% | |
| CTGACGTGGCAGTGATTAAC+TGG | + | chr1.1:56123718-56123737 | MS.gene53011:intron | 50.0% | |
| CTGACGTGGCAGTGATTAAC+TGG | - | chr1.1:56123737-56123718 | None:intergenic | 50.0% | |
| GAAGCTCTTTCAAACCCCGA+CGG | + | chr1.1:56124139-56124158 | MS.gene53011:CDS | 50.0% | |
| GATTGTGTGGGTTCCCATTG+TGG | + | chr1.1:56124470-56124489 | MS.gene53011:CDS | 50.0% | |
| TCCTCAACTTTCGAAGCCTG+AGG | + | chr1.1:56122910-56122929 | MS.gene53011:CDS | 50.0% | |
| ! | TGGCAAGTGGTTCTGTTGGT+TGG | - | chr1.1:56122865-56122884 | None:intergenic | 50.0% |
| !! | AATGTGGGTTGATTCCCTGC+TGG | + | chr1.1:56124752-56124771 | MS.gene53011:CDS | 50.0% |
| GCCTCAGGCTTCGAAAGTTG+AGG | - | chr1.1:56122914-56122933 | None:intergenic | 55.0% | |
| GGGTTCCCATTGTGGAGGAA+TGG | + | chr1.1:56124478-56124497 | MS.gene53011:CDS | 55.0% | |
| TCCAAAGCTGGTGCAAGAGC+TGG | - | chr1.1:56123058-56123077 | None:intergenic | 55.0% | |
| TCCAGCTCTTGCACCAGCTT+TGG | + | chr1.1:56123054-56123073 | MS.gene53011:CDS | 55.0% | |
| TGTGTGGGTTCCCATTGTGG+AGG | + | chr1.1:56124473-56124492 | MS.gene53011:CDS | 55.0% | |
| ! | GTCATGCAAGGCACCAGGTG+AGG | + | chr1.1:56122712-56122731 | MS.gene53011:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 56122710 | 56124893 | 56122710 | ID=MS.gene53011 |
| chr1.1 | mRNA | 56122710 | 56124893 | 56122710 | ID=MS.gene53011.t1;Parent=MS.gene53011 |
| chr1.1 | exon | 56122710 | 56123158 | 56122710 | ID=MS.gene53011.t1.exon1;Parent=MS.gene53011.t1 |
| chr1.1 | CDS | 56122710 | 56123158 | 56122710 | ID=cds.MS.gene53011.t1;Parent=MS.gene53011.t1 |
| chr1.1 | exon | 56123903 | 56123997 | 56123903 | ID=MS.gene53011.t1.exon2;Parent=MS.gene53011.t1 |
| chr1.1 | CDS | 56123903 | 56123997 | 56123903 | ID=cds.MS.gene53011.t1;Parent=MS.gene53011.t1 |
| chr1.1 | exon | 56124111 | 56124244 | 56124111 | ID=MS.gene53011.t1.exon3;Parent=MS.gene53011.t1 |
| chr1.1 | CDS | 56124111 | 56124244 | 56124111 | ID=cds.MS.gene53011.t1;Parent=MS.gene53011.t1 |
| chr1.1 | exon | 56124342 | 56124893 | 56124342 | ID=MS.gene53011.t1.exon4;Parent=MS.gene53011.t1 |
| chr1.1 | CDS | 56124342 | 56124893 | 56124342 | ID=cds.MS.gene53011.t1;Parent=MS.gene53011.t1 |
| Gene Sequence |
| Protein sequence |
