AlfalfaGEDB | MS.gene055846

M. sativa cultivar XinJiangDaYe / MS.gene055846

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016491
PFAM: PF13561.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055846.t1	XP_013465058.1	95.1	264	13	0	1	264	1	264	3.80E-136	494.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055846.t1	Q94K41	61.6	255	98	0	1	255	1	255	1.7e-84	313.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055846.t1	A0A072VCB0	95.1	264	13	0	1	264	1	264	2.7e-136	494.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene055359	MS.gene055846	0.801632	8.22E-49	-1.69E-46
MS.gene055846	MS.gene061337	0.809822	1.56E-50	-1.69E-46
MS.gene055846	MS.gene31507	0.855512	6.00E-62	-1.69E-46
MS.gene055846	MS.gene53011	0.84697	1.55E-59	-1.69E-46
MS.gene055846	MS.gene67194	0.816493	5.38E-52	-1.69E-46
MS.gene055846	MS.gene82319	0.806323	8.70E-50	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene62195	MS.gene055846	PPI
MS.gene055846	MS.gene43481	PPI
MS.gene008153	MS.gene055846	PPI
MS.gene055846	MS.gene44088	PPI
MS.gene042142	MS.gene055846	PPI
MS.gene23019	MS.gene055846	PPI
MS.gene014425	MS.gene055846	PPI
MS.gene63482	MS.gene055846	PPI
MS.gene012794	MS.gene055846	PPI
MS.gene055846	MS.gene07097	PPI
MS.gene007002	MS.gene055846	PPI
MS.gene018066	MS.gene055846	PPI
MS.gene28848	MS.gene055846	PPI
MS.gene87026	MS.gene055846	PPI
MS.gene68956	MS.gene055846	PPI
MS.gene62194	MS.gene055846	PPI
MS.gene63307	MS.gene055846	PPI
MS.gene87780	MS.gene055846	PPI
MS.gene006617	MS.gene055846	PPI
MS.gene54598	MS.gene055846	PPI
MS.gene028938	MS.gene055846	PPI
MS.gene73088	MS.gene055846	PPI
MS.gene056339	MS.gene055846	PPI
MS.gene03319	MS.gene055846	PPI
MS.gene055846	MS.gene50524	PPI
MS.gene54952	MS.gene055846	PPI
MS.gene031693	MS.gene055846	PPI
MS.gene050432	MS.gene055846	PPI
MS.gene68880	MS.gene055846	PPI
MS.gene42260	MS.gene055846	PPI
MS.gene08694	MS.gene055846	PPI
MS.gene064756	MS.gene055846	PPI
MS.gene25674	MS.gene055846	PPI
MS.gene003926	MS.gene055846	PPI
MS.gene52742	MS.gene055846	PPI
MS.gene007006	MS.gene055846	PPI
MS.gene072664	MS.gene055846	PPI
MS.gene055846	MS.gene04700	PPI
MS.gene055846	MS.gene31507	PPI
MS.gene50522	MS.gene055846	PPI
MS.gene28847	MS.gene055846	PPI
MS.gene055846	MS.gene08695	PPI
MS.gene007678	MS.gene055846	PPI
MS.gene044694	MS.gene055846	PPI
MS.gene63484	MS.gene055846	PPI
MS.gene055565	MS.gene055846	PPI
MS.gene012681	MS.gene055846	PPI
MS.gene63300	MS.gene055846	PPI
MS.gene008162	MS.gene055846	PPI
MS.gene021164	MS.gene055846	PPI
MS.gene95020	MS.gene055846	PPI
MS.gene050862	MS.gene055846	PPI
MS.gene065380	MS.gene055846	PPI
MS.gene50524	MS.gene055846	PPI
MS.gene42856	MS.gene055846	PPI
MS.gene63403	MS.gene055846	PPI
MS.gene019786	MS.gene055846	PPI
MS.gene52743	MS.gene055846	PPI
MS.gene008161	MS.gene055846	PPI
MS.gene043387	MS.gene055846	PPI
MS.gene25667	MS.gene055846	PPI
MS.gene08756	MS.gene055846	PPI
MS.gene07097	MS.gene055846	PPI
MS.gene08695	MS.gene055846	PPI
MS.gene63306	MS.gene055846	PPI
MS.gene62187	MS.gene055846	PPI
MS.gene005221	MS.gene055846	PPI
MS.gene80360	MS.gene055846	PPI
MS.gene024269	MS.gene055846	PPI
MS.gene033685	MS.gene055846	PPI
MS.gene42114	MS.gene055846	PPI
MS.gene056029	MS.gene055846	PPI
MS.gene006999	MS.gene055846	PPI
MS.gene055846	MS.gene039828	PPI
MS.gene008160	MS.gene055846	PPI
MS.gene73824	MS.gene055846	PPI
MS.gene055846	MS.gene072462	PPI
MS.gene63483	MS.gene055846	PPI
MS.gene04700	MS.gene055846	PPI
MS.gene055846	MS.gene003992	PPI
MS.gene055846	MS.gene30551	PPI
MS.gene045581	MS.gene055846	PPI
MS.gene050431	MS.gene055846	PPI
MS.gene050131	MS.gene055846	PPI
MS.gene003925	MS.gene055846	PPI
MS.gene62193	MS.gene055846	PPI
MS.gene066728	MS.gene055846	PPI
MS.gene85724	MS.gene055846	PPI
MS.gene31507	MS.gene055846	PPI
MS.gene41122	MS.gene055846	PPI
MS.gene29327	MS.gene055846	PPI
MS.gene073684	MS.gene055846	PPI
MS.gene63308	MS.gene055846	PPI
MS.gene07096	MS.gene055846	PPI
MS.gene055846	MS.gene003729	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055846.t1	MTR_2g090165	95.076	264	13	0	1	264	1	264	0.0	513
MS.gene055846.t1	MTR_7g110130	80.827	266	49	2	1	264	1	266	1.65e-153	428
MS.gene055846.t1	MTR_7g110160	76.923	260	42	2	1	260	1	242	1.38e-139	392
MS.gene055846.t1	MTR_7g110140	68.966	261	80	1	1	261	1	260	1.20e-129	368
MS.gene055846.t1	MTR_6g035395	62.745	255	82	1	3	257	2	243	2.30e-109	316
MS.gene055846.t1	MTR_6g023590	49.801	251	124	2	5	253	12	262	1.14e-84	254
MS.gene055846.t1	MTR_7g071680	49.821	279	116	5	2	259	25	300	2.72e-80	244
MS.gene055846.t1	MTR_6g023610	51.600	250	119	2	5	252	12	261	2.92e-80	243
MS.gene055846.t1	MTR_6g023910	50.198	253	124	2	2	252	9	261	3.11e-80	243
MS.gene055846.t1	MTR_6g023950	49.802	253	125	2	5	255	12	264	1.42e-79	241
MS.gene055846.t1	MTR_4g052340	51.575	254	118	4	4	256	12	261	7.55e-79	239
MS.gene055846.t1	MTR_4g052320	50.391	256	123	3	2	256	4	256	7.66e-79	239
MS.gene055846.t1	MTR_4g052350	50.980	255	120	3	4	257	12	262	2.55e-78	238
MS.gene055846.t1	MTR_6g023600	48.606	251	127	2	5	253	12	262	7.71e-78	236
MS.gene055846.t1	MTR_7g105460	48.221	253	129	2	5	256	12	263	9.19e-78	236
MS.gene055846.t1	MTR_4g052300	50.584	257	120	4	2	256	4	255	2.34e-77	235
MS.gene055846.t1	MTR_6g023990	46.457	254	134	2	2	253	10	263	4.54e-77	234
MS.gene055846.t1	MTR_6g023600	47.809	251	123	3	5	253	12	256	1.45e-73	225
MS.gene055846.t1	MTR_7g107670	45.312	256	132	4	4	253	31	284	3.93e-71	221
MS.gene055846.t1	MTR_7g083870	45.865	266	134	6	4	261	33	296	1.40e-70	219
MS.gene055846.t1	MTR_4g078630	43.590	273	141	5	1	264	14	282	2.64e-64	202
MS.gene055846.t1	MTR_7g105580	45.211	261	124	4	4	263	6	248	2.38e-63	199
MS.gene055846.t1	MTR_3g020670	43.123	269	142	5	4	263	14	280	1.98e-61	195
MS.gene055846.t1	MTR_7g105590	48.148	189	96	2	4	191	6	193	3.36e-53	171
MS.gene055846.t1	MTR_3g113870	44.211	190	103	3	14	202	29	216	1.35e-48	160
MS.gene055846.t1	MTR_7g105570	48.066	181	92	2	77	256	41	220	1.41e-48	160
MS.gene055846.t1	MTR_4g084800	48.921	139	70	1	4	141	11	149	1.95e-39	134
MS.gene055846.t1	MTR_4g058840	30.545	275	153	6	1	251	1	261	5.73e-25	100
MS.gene055846.t1	MTR_4g058820	30.545	275	153	6	1	251	1	261	5.73e-25	100
MS.gene055846.t1	MTR_6g023940	34.826	201	67	4	2	200	9	147	8.41e-25	97.1
MS.gene055846.t1	MTR_4g058810	29.496	278	158	6	1	254	1	264	1.19e-21	91.7
MS.gene055846.t1	MTR_3g085740	27.519	258	166	9	4	252	73	318	2.76e-21	91.3
MS.gene055846.t1	MTR_4g131740	27.863	262	163	8	5	251	39	289	5.71e-20	87.4
MS.gene055846.t1	MTR_1g051165	27.757	263	176	4	4	254	12	272	6.96e-20	87.0
MS.gene055846.t1	MTR_7g113650	26.316	266	170	7	5	256	39	292	1.04e-19	86.7
MS.gene055846.t1	MTR_1g082760	28.731	268	161	10	5	256	39	292	2.97e-19	85.5
MS.gene055846.t1	MTR_1196s0010	33.200	250	152	9	7	252	275	513	7.43e-19	85.9
MS.gene055846.t1	MTR_4g132850	27.381	252	172	5	4	252	5	248	1.47e-18	82.8
MS.gene055846.t1	MTR_4g064887	26.966	267	173	8	2	259	11	264	9.78e-18	80.9
MS.gene055846.t1	MTR_3g068070	26.744	258	177	7	2	254	11	261	1.30e-15	75.1
MS.gene055846.t1	MTR_3g068085	27.715	267	172	8	6	263	15	269	4.17e-15	73.6
MS.gene055846.t1	MTR_7g105560	62.500	56	21	0	4	59	11	66	4.33e-15	71.2
MS.gene055846.t1	MTR_3g068065	26.877	253	173	7	6	253	17	262	5.49e-15	73.2
MS.gene055846.t1	MTR_4g064887	29.500	200	130	5	2	195	11	205	8.17e-15	72.0
MS.gene055846.t1	MTR_3g068175	29.213	267	178	9	1	263	12	271	1.62e-14	72.0
MS.gene055846.t1	MTR_8g442750	28.358	268	172	10	6	260	14	274	3.83e-14	71.2
MS.gene055846.t1	MTR_7g094510	28.302	265	166	9	1	252	1	254	4.28e-14	70.5
MS.gene055846.t1	MTR_7g094520	30.469	256	162	8	6	252	11	259	6.10e-14	70.1
MS.gene055846.t1	MTR_7g063330	28.736	261	169	9	2	253	11	263	8.09e-14	69.7
MS.gene055846.t1	MTR_3g068155	28.016	257	175	9	3	255	16	266	2.28e-13	68.6
MS.gene055846.t1	MTR_4g086410	26.744	258	154	6	8	248	6	245	2.35e-13	70.1
MS.gene055846.t1	MTR_4g058830	31.098	164	99	3	95	251	51	207	3.60e-13	67.4
MS.gene055846.t1	MTR_8g096580	28.194	227	143	6	4	225	43	254	6.90e-13	67.8
MS.gene055846.t1	MTR_4g086400	27.536	207	128	4	8	197	6	207	1.06e-12	68.2
MS.gene055846.t1	MTR_3g068175	28.782	271	178	10	1	263	12	275	1.91e-12	66.2
MS.gene055846.t1	MTR_7g063320	29.771	262	164	9	2	252	11	263	3.60e-12	65.1
MS.gene055846.t1	MTR_7g063360	27.376	263	173	9	2	254	12	266	1.33e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055846.t1	AT2G47140	61.569	255	98	0	1	255	1	255	5.78e-112	323
MS.gene055846.t1	AT2G47130	58.301	259	101	2	1	256	1	255	9.84e-102	297
MS.gene055846.t1	AT3G29250	58.077	260	101	2	1	256	1	256	1.56e-101	296
MS.gene055846.t1	AT3G29250	58.077	260	101	2	1	256	37	292	3.05e-101	297
MS.gene055846.t1	AT3G29250	57.752	258	101	2	3	256	41	294	3.08e-100	295
MS.gene055846.t1	AT2G47120	56.154	260	104	4	1	256	1	254	6.75e-100	292
MS.gene055846.t1	AT2G47120	56.250	256	102	4	5	256	6	255	4.47e-99	290
MS.gene055846.t1	AT3G29260	57.143	259	104	2	1	256	1	255	5.10e-99	290
MS.gene055846.t1	AT3G51680	48.162	272	125	3	4	259	30	301	6.54e-76	233
MS.gene055846.t1	AT3G26770	42.910	268	141	5	4	261	39	304	9.36e-64	202
MS.gene055846.t1	AT4G03140	43.411	258	138	4	4	255	76	331	3.11e-62	199
MS.gene055846.t1	AT1G52340	45.318	267	128	6	4	256	16	278	1.29e-61	196
MS.gene055846.t1	AT3G26760	39.630	270	151	5	2	261	32	299	2.85e-60	193
MS.gene055846.t1	AT3G42960	43.678	261	135	3	2	253	4	261	4.46e-54	176
MS.gene055846.t1	AT2G47150	36.653	251	106	7	6	256	1	198	4.25e-37	130
MS.gene055846.t1	AT3G55290	29.070	258	164	5	6	251	17	267	2.23e-21	90.9
MS.gene055846.t1	AT3G55290	29.070	258	164	5	6	251	18	268	2.26e-21	90.9
MS.gene055846.t1	AT1G07450	29.119	261	168	7	1	254	3	253	1.45e-20	88.6
MS.gene055846.t1	AT1G62610	29.615	260	161	6	6	251	15	266	1.84e-20	88.6
MS.gene055846.t1	AT1G62610	29.615	260	161	6	6	251	14	265	1.87e-20	88.6
MS.gene055846.t1	AT1G62610	29.615	260	161	6	6	251	13	264	2.10e-20	88.2
MS.gene055846.t1	AT1G62610	29.615	260	161	6	6	251	19	270	2.60e-20	88.2
MS.gene055846.t1	AT3G55310	29.434	265	154	7	6	251	17	267	3.99e-19	84.7
MS.gene055846.t1	AT2G29310	28.148	270	156	8	3	254	4	253	4.06e-19	84.7
MS.gene055846.t1	AT1G63380	27.481	262	170	5	6	254	19	273	1.12e-18	83.6
MS.gene055846.t1	AT1G63380	27.481	262	170	5	6	254	15	269	1.14e-18	83.6
MS.gene055846.t1	AT1G63380	27.481	262	170	5	6	254	22	276	1.17e-18	83.6
MS.gene055846.t1	AT1G63380	27.481	262	170	5	6	254	17	271	1.31e-18	83.6
MS.gene055846.t1	AT3G46170	27.132	258	169	5	6	251	26	276	1.61e-18	83.2
MS.gene055846.t1	AT2G29340	28.409	264	163	8	3	254	4	253	3.96e-18	82.0
MS.gene055846.t1	AT2G29340	28.409	264	163	8	3	254	4	253	5.92e-18	82.0
MS.gene055846.t1	AT1G24360	25.581	258	175	8	4	254	72	319	7.31e-18	82.0
MS.gene055846.t1	AT4G05530	29.921	254	163	7	4	252	7	250	8.61e-18	80.9
MS.gene055846.t1	AT2G17845	27.925	265	169	6	6	255	47	304	3.09e-17	80.1
MS.gene055846.t1	AT2G29150	28.571	259	170	7	2	254	12	261	3.26e-17	79.3
MS.gene055846.t1	AT5G06060	29.845	258	167	8	3	254	6	255	1.28e-16	77.8
MS.gene055846.t1	AT2G30670	27.132	258	174	6	3	254	4	253	1.28e-16	77.8
MS.gene055846.t1	AT1G54870	26.316	266	170	7	5	256	83	336	1.42e-16	78.6
MS.gene055846.t1	AT1G54870	26.316	266	170	7	5	256	81	334	1.43e-16	78.6
MS.gene055846.t1	AT2G29290	28.030	264	164	6	3	254	4	253	1.52e-16	77.4
MS.gene055846.t1	AT1G07440	27.843	255	175	7	3	254	9	257	2.62e-16	77.0
MS.gene055846.t1	AT2G29350	26.641	259	175	7	2	254	11	260	2.16e-15	74.3
MS.gene055846.t1	AT2G29370	27.444	266	175	8	3	260	13	268	2.19e-15	74.3
MS.gene055846.t1	AT2G29360	27.481	262	168	9	3	254	13	262	3.32e-15	73.9
MS.gene055846.t1	AT3G05260	27.273	264	166	8	5	254	36	287	8.13e-15	73.2
MS.gene055846.t1	AT2G29290	28.500	200	137	4	56	254	42	236	1.91e-14	71.2
MS.gene055846.t1	AT2G29300	27.652	264	176	8	3	259	4	259	2.34e-14	71.6
MS.gene055846.t1	AT2G29260	29.389	262	167	10	2	254	62	314	2.40e-14	72.0
MS.gene055846.t1	AT1G49670	30.493	223	124	7	8	210	6	217	2.40e-14	72.8
MS.gene055846.t1	AT1G49670	30.493	223	124	7	8	210	6	217	2.46e-14	72.8
MS.gene055846.t1	AT2G29300	28.571	259	170	9	3	254	4	254	2.81e-14	71.2
MS.gene055846.t1	AT4G13180	31.801	261	156	10	6	254	13	263	2.89e-14	71.2
MS.gene055846.t1	AT2G29340	29.648	199	129	7	3	195	4	197	6.71e-14	68.9
MS.gene055846.t1	AT2G29340	29.648	199	129	7	3	195	4	197	6.71e-14	68.9
MS.gene055846.t1	AT3G12800	28.413	271	171	11	6	261	10	272	1.31e-13	69.7
MS.gene055846.t1	AT2G29310	28.502	207	121	6	3	195	4	197	2.38e-13	67.4
MS.gene055846.t1	AT2G29320	29.297	256	166	9	6	254	13	260	2.57e-13	68.6
MS.gene055846.t1	AT2G29330	26.953	256	177	6	3	254	4	253	4.24e-13	67.8
MS.gene055846.t1	AT1G10310	32.576	132	87	2	63	194	73	202	1.14e-12	66.2
MS.gene055846.t1	AT2G29350	26.500	200	140	5	56	254	29	222	2.08e-12	65.5
MS.gene055846.t1	AT5G50770	28.796	191	128	5	1	187	40	226	2.39e-12	66.2
MS.gene055846.t1	AT2G29350	28.000	200	133	5	2	195	11	205	6.43e-12	63.9
MS.gene055846.t1	AT2G29310	26.293	232	151	7	32	254	31	251	7.86e-12	64.3

Find 55 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGCAGATATCAATGATGAAT+TGG	0.283540	2.1:-11201312	MS.gene055846:CDS
TGGTGTTGTCAAATTCATTT+AGG	0.283555	2.1:+11201111	None:intergenic
GCATCAAAACATGGTCTTAT+AGG	0.284802	2.1:-11200948	MS.gene055846:CDS
CCTTGATTATGCTAATTTGC+AGG	0.303341	2.1:-11200793	MS.gene055846:CDS
TGCAGTGAGCTTGGAGGTTA+TGG	0.303780	2.1:-11200909	MS.gene055846:CDS
GTCAAGATATTCGTGGAAAA+TGG	0.306506	2.1:-11201350	MS.gene055846:CDS
CATCATGTTGCAAATTCAAT+AGG	0.308261	2.1:-11201287	MS.gene055846:CDS
TACACTGGCAGTGCAAATTA+TGG	0.353051	2.1:+11201010	None:intergenic
GATGAATCTGCTTATGTTAG+TGG	0.370705	2.1:-11200717	MS.gene055846:CDS
ATGGTCTTATAGGACTTGTT+AGG	0.392057	2.1:-11200938	MS.gene055846:CDS
GCTTTCACGTTGGAGAGATA+TGG	0.399630	2.1:-11201200	MS.gene055846:CDS
ACTGGGGCAGCAAGCGGAAT+AGG	0.399759	2.1:-11201383	MS.gene055846:CDS
GCCAACAGCTTCGACTTCAC+TGG	0.415316	2.1:+11200815	None:intergenic
ATTTGCACTGCCAGTGTAGC+TGG	0.419113	2.1:-11201005	MS.gene055846:CDS
CAACTTGTTTCTCATCTCTC+AGG	0.421960	2.1:+11201234	None:intergenic
ATTGCTGAACATGATGTCTA+AGG	0.424678	2.1:+11201175	None:intergenic
TGATCATAGGTTGGAGGGTA+AGG	0.428592	2.1:-11201417	MS.gene055846:intron
AATTCTAGTATGCTAGATAA+AGG	0.435820	2.1:+11201137	None:intergenic
ATCATGTTGCAAATTCAATA+GGG	0.440902	2.1:-11201286	MS.gene055846:CDS
GACATCATGTTCAGCAATGC+TGG	0.459929	2.1:-11201170	MS.gene055846:CDS
GCAGATATCAATGATGAATT+GGG	0.463215	2.1:-11201311	MS.gene055846:CDS
GTGGCTTCTCAGTCATTAAT+CGG	0.474841	2.1:-11200674	MS.gene055846:CDS
TTCAGCAATGCTGGTAATGC+TGG	0.487409	2.1:-11201161	MS.gene055846:CDS
TTTGCAGGGAATTACATTGA+AGG	0.494365	2.1:-11200778	MS.gene055846:CDS
AGAGGTGTAGCAACAGCATA+AGG	0.501265	2.1:+11200864	None:intergenic
GGTAAGGTAGCTATAGTGAC+TGG	0.506112	2.1:-11201401	MS.gene055846:CDS
GGACACAACTTGGTCGTTGA+TGG	0.511755	2.1:-11200696	MS.gene055846:CDS
CTTGATTATGCTAATTTGCA+GGG	0.512554	2.1:-11200792	MS.gene055846:CDS
ACCTCTTGCATGTAGAGCAC+TGG	0.521993	2.1:-11200847	MS.gene055846:CDS
CAAGCATGCTGCACGTGTAA+TGG	0.527529	2.1:-11201054	MS.gene055846:CDS
AGGTCAACATGCAGTGAGCT+TGG	0.540441	2.1:-11200918	MS.gene055846:CDS
CCTGCAAATTAGCATAATCA+AGG	0.541425	2.1:+11200793	None:intergenic
ACCATGGCTGTGAACCTTCG+TGG	0.549237	2.1:-11201092	MS.gene055846:CDS
ACCAACAAAACCAGCTACAC+TGG	0.550665	2.1:+11200995	None:intergenic
CCCAGTGAAGTCGAAGCTGT+TGG	0.551376	2.1:-11200816	MS.gene055846:CDS
TTATGTTAGTGGACACAACT+TGG	0.559853	2.1:-11200706	MS.gene055846:CDS
CCAACAGCTTCGACTTCACT+GGG	0.566318	2.1:+11200816	None:intergenic
ACCACGAAGGTTCACAGCCA+TGG	0.573400	2.1:+11201091	None:intergenic
TCAACATGCAGTGAGCTTGG+AGG	0.582201	2.1:-11200915	MS.gene055846:CDS
GTAAGGTAGCTATAGTGACT+GGG	0.582532	2.1:-11201400	MS.gene055846:CDS
AGAAGCAGTCAAGATATTCG+TGG	0.594796	2.1:-11201357	MS.gene055846:CDS
CACAACTTGGTCGTTGATGG+TGG	0.601290	2.1:-11200693	MS.gene055846:CDS
TCCAGTGCTCTACATGCAAG+AGG	0.608317	2.1:+11200846	None:intergenic
ATAGTGACTGGGGCAGCAAG+CGG	0.610587	2.1:-11201389	MS.gene055846:CDS
CATCTCTCAGGTCACAGTGG+TGG	0.620723	2.1:+11201246	None:intergenic
GGAAATTGTTGCTTTCACGT+TGG	0.626510	2.1:-11201210	MS.gene055846:CDS
TGCATGTAGAGCACTGGACA+TGG	0.628198	2.1:-11200841	MS.gene055846:CDS
AATCATCAATGTCAAAACAA+AGG	0.629421	2.1:-11201546	None:intergenic
GCATGCTGCACGTGTAATGG+TGG	0.633944	2.1:-11201051	MS.gene055846:CDS
GAGAGATGAGAAACAAGTTG+AGG	0.635217	2.1:-11201231	MS.gene055846:CDS
GATTATACAGCATCAAAACA+TGG	0.649473	2.1:-11200957	MS.gene055846:CDS
TCTCATCTCTCAGGTCACAG+TGG	0.665905	2.1:+11201243	None:intergenic
AAATGAATTTGACAACACCA+TGG	0.674818	2.1:-11201108	MS.gene055846:CDS
TAAGGTAGCTATAGTGACTG+GGG	0.695873	2.1:-11201399	MS.gene055846:CDS
TAGTTGCAGCTGCACCACGA+AGG	0.710714	2.1:+11201078	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATATTTTATTTTATGATCAT+AGG	-	chr2.1:11200758-11200777	MS.gene055846:CDS	10.0%
!!!	TTTATTTTATGATCATAGGT+TGG	-	chr2.1:11200762-11200781	MS.gene055846:CDS	20.0%
!	AATTCTAGTATGCTAGATAA+AGG	+	chr2.1:11201054-11201073	None:intergenic	25.0%
!	ATCATGTTGCAAATTCAATA+GGG	-	chr2.1:11200902-11200921	MS.gene055846:CDS	25.0%
	AAATGAATTTGACAACACCA+TGG	-	chr2.1:11201080-11201099	MS.gene055846:CDS	30.0%
	AGCAGATATCAATGATGAAT+TGG	-	chr2.1:11200876-11200895	MS.gene055846:CDS	30.0%
	CATCATGTTGCAAATTCAAT+AGG	-	chr2.1:11200901-11200920	MS.gene055846:CDS	30.0%
	GATTATACAGCATCAAAACA+TGG	-	chr2.1:11201231-11201250	MS.gene055846:CDS	30.0%
	GCAGATATCAATGATGAATT+GGG	-	chr2.1:11200877-11200896	MS.gene055846:CDS	30.0%
	TGTTATAAGCCAATAGAAAC+AGG	+	chr2.1:11200724-11200743	None:intergenic	30.0%
!	CTTGATTATGCTAATTTGCA+GGG	-	chr2.1:11201396-11201415	MS.gene055846:CDS	30.0%
!!	ATTTTATGATCATAGGTTGG+AGG	-	chr2.1:11200765-11200784	MS.gene055846:CDS	30.0%
!!	TGGTGTTGTCAAATTCATTT+AGG	+	chr2.1:11201080-11201099	None:intergenic	30.0%
!!	TTTTATGATCATAGGTTGGA+GGG	-	chr2.1:11200766-11200785	MS.gene055846:CDS	30.0%
	ATTGCTGAACATGATGTCTA+AGG	+	chr2.1:11201016-11201035	None:intergenic	35.0%
	CCTGCAAATTAGCATAATCA+AGG	+	chr2.1:11201398-11201417	None:intergenic	35.0%
	GATGAATCTGCTTATGTTAG+TGG	-	chr2.1:11201471-11201490	MS.gene055846:intron	35.0%
	GTCAAGATATTCGTGGAAAA+TGG	-	chr2.1:11200838-11200857	MS.gene055846:CDS	35.0%
	TTTGCAGGGAATTACATTGA+AGG	-	chr2.1:11201410-11201429	MS.gene055846:CDS	35.0%
!	ATGGTGGAAAGAAAAATACG+TGG	-	chr2.1:11201153-11201172	MS.gene055846:CDS	35.0%
!	CCTTGATTATGCTAATTTGC+AGG	-	chr2.1:11201395-11201414	MS.gene055846:CDS	35.0%
!	TTATGTTAGTGGACACAACT+TGG	-	chr2.1:11201482-11201501	MS.gene055846:intron	35.0%
!!	ATGGTCTTATAGGACTTGTT+AGG	-	chr2.1:11201250-11201269	MS.gene055846:CDS	35.0%
!!	GCATCAAAACATGGTCTTAT+AGG	-	chr2.1:11201240-11201259	MS.gene055846:CDS	35.0%
	ACACTGTACTAGCTAGAAAG+AGG	+	chr2.1:11200698-11200717	None:intergenic	40.0%
	AGAAGCAGTCAAGATATTCG+TGG	-	chr2.1:11200831-11200850	MS.gene055846:CDS	40.0%
	CACTGTACTAGCTAGAAAGA+GGG	+	chr2.1:11200697-11200716	None:intergenic	40.0%
	GAGAGATGAGAAACAAGTTG+AGG	-	chr2.1:11200957-11200976	MS.gene055846:CDS	40.0%
	GTAAGGTAGCTATAGTGACT+GGG	-	chr2.1:11200788-11200807	MS.gene055846:CDS	40.0%
	GTGGCTTCTCAGTCATTAAT+CGG	-	chr2.1:11201514-11201533	MS.gene055846:intron	40.0%
	TAAGGTAGCTATAGTGACTG+GGG	-	chr2.1:11200789-11200808	MS.gene055846:CDS	40.0%
	TACACTGGCAGTGCAAATTA+TGG	+	chr2.1:11201181-11201200	None:intergenic	40.0%
!	CAACTTGTTTCTCATCTCTC+AGG	+	chr2.1:11200957-11200976	None:intergenic	40.0%
!!	CAGTGTCTACCTGTTTCTAT+TGG	-	chr2.1:11200712-11200731	MS.gene055846:CDS	40.0%
!!	GGAAATTGTTGCTTTCACGT+TGG	-	chr2.1:11200978-11200997	MS.gene055846:CDS	40.0%
	ACCAACAAAACCAGCTACAC+TGG	+	chr2.1:11201196-11201215	None:intergenic	45.0%
	GACATCATGTTCAGCAATGC+TGG	-	chr2.1:11201018-11201037	MS.gene055846:CDS	45.0%
	GCTTTCACGTTGGAGAGATA+TGG	-	chr2.1:11200988-11201007	MS.gene055846:CDS	45.0%
	GGTAAGGTAGCTATAGTGAC+TGG	-	chr2.1:11200787-11200806	MS.gene055846:CDS	45.0%
!	AGAGGTGTAGCAACAGCATA+AGG	+	chr2.1:11201327-11201346	None:intergenic	45.0%
!	TGATCATAGGTTGGAGGGTA+AGG	-	chr2.1:11200771-11200790	MS.gene055846:CDS	45.0%
!	TTCAGCAATGCTGGTAATGC+TGG	-	chr2.1:11201027-11201046	MS.gene055846:CDS	45.0%
!!!	AGTGTAGCTGGTTTTGTTGG+TGG	-	chr2.1:11201195-11201214	MS.gene055846:CDS	45.0%
	ACCTCTTGCATGTAGAGCAC+TGG	-	chr2.1:11201341-11201360	MS.gene055846:CDS	50.0%
	AGGTCAACATGCAGTGAGCT+TGG	-	chr2.1:11201270-11201289	MS.gene055846:CDS	50.0%
	ATTTGCACTGCCAGTGTAGC+TGG	-	chr2.1:11201183-11201202	MS.gene055846:CDS	50.0%
	CAAGCATGCTGCACGTGTAA+TGG	-	chr2.1:11201134-11201153	MS.gene055846:CDS	50.0%
	CCAACAGCTTCGACTTCACT+GGG	+	chr2.1:11201375-11201394	None:intergenic	50.0%
	GGACACAACTTGGTCGTTGA+TGG	-	chr2.1:11201492-11201511	MS.gene055846:intron	50.0%
	TCAACATGCAGTGAGCTTGG+AGG	-	chr2.1:11201273-11201292	MS.gene055846:CDS	50.0%
	TCCAGTGCTCTACATGCAAG+AGG	+	chr2.1:11201345-11201364	None:intergenic	50.0%
	TCTCATCTCTCAGGTCACAG+TGG	+	chr2.1:11200948-11200967	None:intergenic	50.0%
	TGCAGTGAGCTTGGAGGTTA+TGG	-	chr2.1:11201279-11201298	MS.gene055846:CDS	50.0%
!	CACAACTTGGTCGTTGATGG+TGG	-	chr2.1:11201495-11201514	MS.gene055846:intron	50.0%
!!	TGCATGTAGAGCACTGGACA+TGG	-	chr2.1:11201347-11201366	MS.gene055846:CDS	50.0%
!!!	GCCAGTGTAGCTGGTTTTGT+TGG	-	chr2.1:11201192-11201211	MS.gene055846:CDS	50.0%
!!!	GGTTTTGTTGGTGGATGTGC+AGG	-	chr2.1:11201204-11201223	MS.gene055846:CDS	50.0%
	ACCACGAAGGTTCACAGCCA+TGG	+	chr2.1:11201100-11201119	None:intergenic	55.0%
	ACCATGGCTGTGAACCTTCG+TGG	-	chr2.1:11201096-11201115	MS.gene055846:CDS	55.0%
	ATAGTGACTGGGGCAGCAAG+CGG	-	chr2.1:11200799-11200818	MS.gene055846:CDS	55.0%
	CATCTCTCAGGTCACAGTGG+TGG	+	chr2.1:11200945-11200964	None:intergenic	55.0%
	CCCAGTGAAGTCGAAGCTGT+TGG	-	chr2.1:11201372-11201391	MS.gene055846:CDS	55.0%
	GCATGCTGCACGTGTAATGG+TGG	-	chr2.1:11201137-11201156	MS.gene055846:CDS	55.0%
	GCCAACAGCTTCGACTTCAC+TGG	+	chr2.1:11201376-11201395	None:intergenic	55.0%
	TAGTTGCAGCTGCACCACGA+AGG	+	chr2.1:11201113-11201132	None:intergenic	55.0%
	ACTGGGGCAGCAAGCGGAAT+AGG	-	chr2.1:11200805-11200824	MS.gene055846:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	11200650	11201560	11200650	ID=MS.gene055846
chr2.1	mRNA	11200650	11201560	11200650	ID=MS.gene055846.t1;Parent=MS.gene055846
chr2.1	exon	11201547	11201560	11201547	ID=MS.gene055846.t1.exon1;Parent=MS.gene055846.t1
chr2.1	CDS	11201547	11201560	11201547	ID=cds.MS.gene055846.t1;Parent=MS.gene055846.t1
chr2.1	exon	11200650	11201430	11200650	ID=MS.gene055846.t1.exon2;Parent=MS.gene055846.t1
chr2.1	CDS	11200650	11201430	11200650	ID=cds.MS.gene055846.t1;Parent=MS.gene055846.t1

Gene Sequence

>MS.gene055846

ATGTCAAAACAAAGGTACGTATAACTTTGTATATTTATGAATCTCCCTCTTTCTAGCTAGTACAGTGTCTACCTGTTTCTATTGGCTTATAACAAATTAATGAATAGTATATTTTATTTTATGATCATAGGTTGGAGGGTAAGGTAGCTATAGTGACTGGGGCAGCAAGCGGAATAGGAGCAGAAGCAGTCAAGATATTCGTGGAAAATGGAGCATTTGTAGTCATAGCAGATATCAATGATGAATTGGGTCATCATGTTGCAAATTCAATAGGGTTAGACAAAGTGAGTTACCACCACTGTGACCTGAGAGATGAGAAACAAGTTGAGGAAATTGTTGCTTTCACGTTGGAGAGATATGGTACCTTAGACATCATGTTCAGCAATGCTGGTAATGCTGGTCCTTTATCTAGCATACTAGAATTTGACCTAAATGAATTTGACAACACCATGGCTGTGAACCTTCGTGGTGCAGCTGCAACTATCAAGCATGCTGCACGTGTAATGGTGGAAAGAAAAATACGTGGATCCATAATTTGCACTGCCAGTGTAGCTGGTTTTGTTGGTGGATGTGCAGGACATGATTATACAGCATCAAAACATGGTCTTATAGGACTTGTTAGGTCAACATGCAGTGAGCTTGGAGGTTATGGAATCAGAGTCAATTCAATCTCACCTTATGCTGTTGCTACACCTCTTGCATGTAGAGCACTGGACATGGTGCCCAGTGAAGTCGAAGCTGTTGGCCTTGATTATGCTAATTTGCAGGGAATTACATTGAAGGCTGCTCATATTGCAGAGACTGCTTTGTTTCTTGCATCTGATGAATCTGCTTATGTTAGTGGACACAACTTGGTCGTTGATGGTGGCTTCTCAGTCATTAATCGGTGTCTTCCTAGTATTAAAAAATGA

Protein sequence

>MS.gene055846.t1

MSKQRLEGKVAIVTGAASGIGAEAVKIFVENGAFVVIADINDELGHHVANSIGLDKVSYHHCDLRDEKQVEEIVAFTLERYGTLDIMFSNAGNAGPLSSILEFDLNEFDNTMAVNLRGAAATIKHAARVMVERKIRGSIICTASVAGFVGGCAGHDYTASKHGLIGLVRSTCSELGGYGIRVNSISPYAVATPLACRALDMVPSEVEAVGLDYANLQGITLKAAHIAETALFLASDESAYVSGHNLVVDGGFSVINRCLPSIKK