Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53115.t1 | XP_003613952.1 | 97 | 231 | 7 | 0 | 1 | 231 | 1 | 231 | 1.40E-118 | 435.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53115.t1 | Q9C4Z7 | 59.9 | 232 | 79 | 6 | 4 | 228 | 5 | 229 | 1.9e-63 | 243.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53115.t1 | G7JWN8 | 97.0 | 231 | 7 | 0 | 1 | 231 | 1 | 231 | 1.0e-118 | 435.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049614 | MS.gene53115 | 0.80469 | 1.91E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene53115 | 0.806794 | 6.92E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene53115 | 0.835104 | 2.04E-56 | -1.69E-46 |
| MS.gene052178 | MS.gene53115 | 0.81595 | 7.11E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene53115 | 0.813579 | 2.38E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene53115 | 0.805418 | 1.35E-49 | -1.69E-46 |
| MS.gene055277 | MS.gene53115 | 0.806242 | 9.05E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene53115 | 0.83059 | 2.70E-55 | -1.69E-46 |
| MS.gene056314 | MS.gene53115 | 0.81513 | 1.08E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene53115 | 0.828031 | 1.13E-54 | -1.69E-46 |
| MS.gene059518 | MS.gene53115 | 0.819681 | 1.02E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene53115 | 0.827875 | 1.23E-54 | -1.69E-46 |
| MS.gene059894 | MS.gene53115 | 0.831015 | 2.12E-55 | -1.69E-46 |
| MS.gene059974 | MS.gene53115 | 0.813597 | 2.36E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53115.t1 | MTR_5g043020 | 96.970 | 231 | 7 | 0 | 1 | 231 | 1 | 231 | 8.75e-167 | 459 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53115.t1 | AT1G69390 | 59.914 | 232 | 79 | 6 | 4 | 228 | 5 | 229 | 1.16e-87 | 259 |
Find 43 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCACCACTTGATATTC+TGG | 0.244756 | 5.4:+32181080 | None:intergenic |
| TTTCTTTGAGCGTTTAAATT+TGG | 0.250395 | 5.4:-32181363 | MS.gene53115:CDS |
| CTATCAACAATGGCGATTTC+CGG | 0.272431 | 5.4:-32183215 | None:intergenic |
| GGAGAAAGTTCTCAGCTTCT+TGG | 0.278127 | 5.4:+32181405 | None:intergenic |
| AAGGACACTGGAGATATTTC+AGG | 0.278153 | 5.4:-32181029 | MS.gene53115:CDS |
| AATGGAGGGTCCTGCATATC+TGG | 0.296453 | 5.4:-32181539 | MS.gene53115:CDS |
| TATCAAGTGGTGGATGAAAC+TGG | 0.298342 | 5.4:-32181074 | MS.gene53115:CDS |
| AATAACAAATATTGAGTATA+AGG | 0.315113 | 5.4:-32181048 | MS.gene53115:CDS |
| GTTGTCATGGTGGAACGTTT+TGG | 0.358148 | 5.4:+32181509 | None:intergenic |
| GTCTCTGCAGATACAGATAT+TGG | 0.363379 | 5.4:-32181143 | MS.gene53115:CDS |
| TAGATTTGATTTCTATGTTC+CGG | 0.386558 | 5.4:-32180994 | MS.gene53115:CDS |
| GGGCACTGTAACAGAGTAAA+TGG | 0.390263 | 5.4:+32181118 | None:intergenic |
| CAAAATCAAGACATTTCATC+CGG | 0.406142 | 5.4:+32180975 | None:intergenic |
| AATCATCTTCAGACGTTGCT+TGG | 0.438839 | 5.4:+32181283 | None:intergenic |
| AAAGAGGTGGTTGGAAGGAG+AGG | 0.466613 | 5.4:+32183149 | None:intergenic |
| TTCTGGTTTAACCCGCCGTA+CGG | 0.471214 | 5.4:+32181097 | None:intergenic |
| GAAGAAAAGAGGTGGTTGGA+AGG | 0.472988 | 5.4:+32183144 | None:intergenic |
| GGAGGAAGAAAAGAGGTGGT+TGG | 0.485305 | 5.4:+32183140 | None:intergenic |
| AGAGGATGTGAGCGATGGAG+TGG | 0.486682 | 5.4:+32183167 | None:intergenic |
| TTCATTGTTTCTTAAATGGA+GGG | 0.495949 | 5.4:-32181553 | MS.gene53115:CDS |
| TGGGGTGAATCCAGATATGC+AGG | 0.499751 | 5.4:+32181529 | None:intergenic |
| CTAAGAAAAGCTCCGTTGCT+AGG | 0.515407 | 5.4:-32181310 | MS.gene53115:CDS |
| TTTCATTGTTTCTTAAATGG+AGG | 0.517610 | 5.4:-32181554 | MS.gene53115:CDS |
| TCTGGTTTAACCCGCCGTAC+GGG | 0.523775 | 5.4:+32181098 | None:intergenic |
| TTGAGCGTTTAAATTTGGCT+TGG | 0.527703 | 5.4:-32181358 | MS.gene53115:CDS |
| GAAGGAGAGGATGTGAGCGA+TGG | 0.527839 | 5.4:+32183162 | None:intergenic |
| TGCAGTGACTCTAATGTCGC+CGG | 0.551915 | 5.4:+32183196 | None:intergenic |
| TGTTACAGTGCCCGTACGGC+GGG | 0.561780 | 5.4:-32181108 | MS.gene53115:CDS |
| ATTGCTTCGTACAGTTGTCA+TGG | 0.565206 | 5.4:+32181496 | None:intergenic |
| ATCAAGTGGTGGATGAAACT+GGG | 0.583073 | 5.4:-32181073 | MS.gene53115:CDS |
| AAAAGGAACGATACCTTTGG+AGG | 0.585564 | 5.4:+32183122 | None:intergenic |
| AATATTGAGTATAAGGACAC+TGG | 0.585790 | 5.4:-32181041 | MS.gene53115:CDS |
| AACTCATATTAACAGCATCA+AGG | 0.588920 | 5.4:+32181384 | None:intergenic |
| ACTCTGTTACAGTGCCCGTA+CGG | 0.591809 | 5.4:-32181112 | MS.gene53115:CDS |
| TACCTTTGGAGGAAGAAAAG+AGG | 0.614181 | 5.4:+32183133 | None:intergenic |
| TCGATGTGAAGTAAGTGAAG+AGG | 0.632252 | 5.4:-32181249 | MS.gene53115:CDS |
| CTGTTACAGTGCCCGTACGG+CGG | 0.640114 | 5.4:-32181109 | MS.gene53115:CDS |
| TTGCTTGGCAATCCTAGCAA+CGG | 0.640673 | 5.4:+32181298 | None:intergenic |
| TAAACCAGAATATCAAGTGG+TGG | 0.645335 | 5.4:-32181084 | MS.gene53115:CDS |
| GCTTCGTACAGTTGTCATGG+TGG | 0.658571 | 5.4:+32181499 | None:intergenic |
| CTTTGGAGGAAGAAAAGAGG+TGG | 0.662965 | 5.4:+32183136 | None:intergenic |
| GGTTAAACCAGAATATCAAG+TGG | 0.711520 | 5.4:-32181087 | MS.gene53115:CDS |
| ACTGTACGAAGCAATATGCG+TGG | 0.720099 | 5.4:-32181488 | MS.gene53115:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACAAATATTGAGTATA+AGG | - | chr5.4:32183138-32183157 | MS.gene53115:CDS | 15.0% |
| !! | ATTTATGTATGTATTTAGTT+TGG | - | chr5.4:32181301-32181320 | MS.gene53115:CDS | 15.0% |
| !! | TTTGAGTAATAAAAATGAAA+GGG | - | chr5.4:32181785-32181804 | MS.gene53115:intron | 15.0% |
| !!! | AAACATGTCATATTTTATTT+GGG | - | chr5.4:32182173-32182192 | MS.gene53115:intron | 15.0% |
| !!! | TATTTTTACTTGCAAATTAA+CGG | - | chr5.4:32181135-32181154 | MS.gene53115:CDS | 15.0% |
| !!! | TGTAGTTTTTGTTAAAATTT+TGG | - | chr5.4:32181645-32181664 | MS.gene53115:intron | 15.0% |
| !! | ATAAATATGAGCTTAAAACA+TGG | + | chr5.4:32181573-32181592 | None:intergenic | 20.0% |
| !! | GTTTGAGTAATAAAAATGAA+AGG | - | chr5.4:32181784-32181803 | MS.gene53115:intron | 20.0% |
| !! | TTCAATTGAATTATATGTGT+CGG | - | chr5.4:32181416-32181435 | MS.gene53115:CDS | 20.0% |
| !!! | AACATGTCATATTTTATTTG+GGG | - | chr5.4:32182174-32182193 | MS.gene53115:intron | 20.0% |
| !!! | AACATGTGATATAATTTTCA+AGG | + | chr5.4:32181767-32181786 | None:intergenic | 20.0% |
| !!! | AACATTTTGTAAATCTTGTA+AGG | + | chr5.4:32182568-32182587 | None:intergenic | 20.0% |
| !!! | ATATTTAATTTAGATGCTTG+TGG | - | chr5.4:32182490-32182509 | MS.gene53115:intron | 20.0% |
| !!! | ATGTTTTAAGCTCATATTTA+TGG | - | chr5.4:32181572-32181591 | MS.gene53115:intron | 20.0% |
| !!! | CAAACATGTCATATTTTATT+TGG | - | chr5.4:32182172-32182191 | MS.gene53115:intron | 20.0% |
| !!! | GATTACAGTAATTGAAATTT+TGG | - | chr5.4:32181528-32181547 | MS.gene53115:CDS | 20.0% |
| !!! | GATTTTCATTGTTTCTTAAA+TGG | - | chr5.4:32182629-32182648 | MS.gene53115:intron | 20.0% |
| !!! | GCTTCATTATGTTTTAAATT+GGG | - | chr5.4:32181506-32181525 | MS.gene53115:CDS | 20.0% |
| !!! | TGCTTCATTATGTTTTAAAT+TGG | - | chr5.4:32181505-32181524 | MS.gene53115:CDS | 20.0% |
| !!! | TGTTACTGTTGTTTTAATAA+TGG | - | chr5.4:32181222-32181241 | MS.gene53115:CDS | 20.0% |
| !!! | TTTTAACAAAAACTACACTT+TGG | + | chr5.4:32181642-32181661 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTCCTCTAATTA+GGG | - | chr5.4:32181083-32181102 | MS.gene53115:CDS | 20.0% |
| ! | AAAATTGAAACCCTAATTAG+AGG | + | chr5.4:32181096-32181115 | None:intergenic | 25.0% |
| ! | AAATACACCTATACATGATA+AGG | - | chr5.4:32182083-32182102 | MS.gene53115:intron | 25.0% |
| ! | AACACATATTTCCAATCAAA+TGG | + | chr5.4:32182292-32182311 | None:intergenic | 25.0% |
| ! | AATAAAAATGAAAGGGAATG+AGG | - | chr5.4:32181792-32181811 | MS.gene53115:intron | 25.0% |
| ! | CAGAACAATTAAGATTAACT+AGG | + | chr5.4:32182598-32182617 | None:intergenic | 25.0% |
| ! | CATTTCTGAACTTGAAATTA+AGG | + | chr5.4:32181276-32181295 | None:intergenic | 25.0% |
| ! | CTAATTAGAGGAAAAAGAAA+AGG | + | chr5.4:32181084-32181103 | None:intergenic | 25.0% |
| ! | GTATTATCCTTATCATGTAT+AGG | + | chr5.4:32182093-32182112 | None:intergenic | 25.0% |
| ! | TATTATCAATGTTGACATTC+TGG | + | chr5.4:32181377-32181396 | None:intergenic | 25.0% |
| ! | TCACTATGTCCAATAATAAT+TGG | - | chr5.4:32181893-32181912 | MS.gene53115:intron | 25.0% |
| ! | TGTTATTGTCTAAACTCTAT+AGG | - | chr5.4:32181844-32181863 | MS.gene53115:intron | 25.0% |
| ! | TTTCTTTGAGCGTTTAAATT+TGG | - | chr5.4:32182823-32182842 | MS.gene53115:intron | 25.0% |
| !! | CCTTTTTGATATTCAGTATA+GGG | - | chr5.4:32182423-32182442 | MS.gene53115:intron | 25.0% |
| !! | CTTTTCTTTTTCCTCTAATT+AGG | - | chr5.4:32181082-32181101 | MS.gene53115:CDS | 25.0% |
| !! | CTTTTTGATATTCAGTATAG+GGG | - | chr5.4:32182424-32182443 | MS.gene53115:intron | 25.0% |
| !! | GACAAATTTCTTTTGCAAAT+AGG | + | chr5.4:32181919-32181938 | None:intergenic | 25.0% |
| !! | TAGATTTGATTTCTATGTTC+CGG | - | chr5.4:32183192-32183211 | MS.gene53115:CDS | 25.0% |
| !! | TATTTTCTCCAATTTCTCTA+AGG | + | chr5.4:32182338-32182357 | None:intergenic | 25.0% |
| !! | TTCATTGTTTCTTAAATGGA+GGG | - | chr5.4:32182633-32182652 | MS.gene53115:intron | 25.0% |
| !! | TTTCATTGTTTCTTAAATGG+AGG | - | chr5.4:32182632-32182651 | MS.gene53115:intron | 25.0% |
| !!! | AATTTCAAGTTCAGAAATGT+TGG | - | chr5.4:32181277-32181296 | MS.gene53115:CDS | 25.0% |
| !!! | ACATGTCATATTTTATTTGG+GGG | - | chr5.4:32182175-32182194 | MS.gene53115:intron | 25.0% |
| !!! | CTTTGAAACAAACTTATTCT+GGG | + | chr5.4:32181941-32181960 | None:intergenic | 25.0% |
| !!! | TCTTTGAAACAAACTTATTC+TGG | + | chr5.4:32181942-32181961 | None:intergenic | 25.0% |
| !!! | TGTATGTATTTAGTTTGGTT+TGG | - | chr5.4:32181306-32181325 | MS.gene53115:CDS | 25.0% |
| !!! | TTGAAAGCGTCAATTATTTT+AGG | + | chr5.4:32181969-32181988 | None:intergenic | 25.0% |
| AACTCATATTAACAGCATCA+AGG | + | chr5.4:32182805-32182824 | None:intergenic | 30.0% | |
| AATATTGAGTATAAGGACAC+TGG | - | chr5.4:32183145-32183164 | MS.gene53115:CDS | 30.0% | |
| ACATAGTGAGTAATGAATTG+TGG | + | chr5.4:32181882-32181901 | None:intergenic | 30.0% | |
| ATCTCATCTCATCAAAACTA+TGG | + | chr5.4:32181820-32181839 | None:intergenic | 30.0% | |
| ATGAAAAATTAGAACCTCCA+AGG | + | chr5.4:32182748-32182767 | None:intergenic | 30.0% | |
| CCCTATACTGAATATCAAAA+AGG | + | chr5.4:32182426-32182445 | None:intergenic | 30.0% | |
| GCAAATAGGCCAATTATTAT+TGG | + | chr5.4:32181905-32181924 | None:intergenic | 30.0% | |
| TCCAATCAAATGGAATAAAG+TGG | + | chr5.4:32182282-32182301 | None:intergenic | 30.0% | |
| TCCACTTTATTCCATTTGAT+TGG | - | chr5.4:32182278-32182297 | MS.gene53115:intron | 30.0% | |
| TCTCATCTCATCAAAACTAT+GGG | + | chr5.4:32181819-32181838 | None:intergenic | 30.0% | |
| TCTTAATTGTTCTGTCTAAC+AGG | - | chr5.4:32182604-32182623 | MS.gene53115:intron | 30.0% | |
| TGTGATTGATGCAAAGTAAA+AGG | + | chr5.4:32182058-32182077 | None:intergenic | 30.0% | |
| ! | GCCTTTTTGATATTCAGTAT+AGG | - | chr5.4:32182422-32182441 | MS.gene53115:intron | 30.0% |
| ! | TTTTTCCATTCTATGCTGAT+CGG | - | chr5.4:32182369-32182388 | MS.gene53115:intron | 30.0% |
| !! | ATCTATAACAAAAAGCACCA+CGG | + | chr5.4:32181723-32181742 | None:intergenic | 30.0% |
| !! | ATGTCATATTTTATTTGGGG+GGG | - | chr5.4:32182177-32182196 | MS.gene53115:intron | 30.0% |
| !! | CATGTCATATTTTATTTGGG+GGG | - | chr5.4:32182176-32182195 | MS.gene53115:intron | 30.0% |
| AAGAAAAGGAACGATACCTT+TGG | + | chr5.4:32181070-32181089 | None:intergenic | 35.0% | |
| AATGAAGCACAAATACTCCA+TGG | + | chr5.4:32181494-32181513 | None:intergenic | 35.0% | |
| ATGAAGCACAAATACTCCAT+GGG | + | chr5.4:32181493-32181512 | None:intergenic | 35.0% | |
| GAGTTTGGAGAAATTATCGT+GGG | - | chr5.4:32181596-32181615 | MS.gene53115:intron | 35.0% | |
| GCTCATATTTATGGTGAGTT+TGG | - | chr5.4:32181581-32181600 | MS.gene53115:intron | 35.0% | |
| GGTTAAACCAGAATATCAAG+TGG | - | chr5.4:32183099-32183118 | MS.gene53115:intron | 35.0% | |
| TAAACCAGAATATCAAGTGG+TGG | - | chr5.4:32183102-32183121 | MS.gene53115:intron | 35.0% | |
| TCAAACATGTACTAAAACCG+TGG | - | chr5.4:32181703-32181722 | MS.gene53115:intron | 35.0% | |
| TGAGTTTGGAGAAATTATCG+TGG | - | chr5.4:32181595-32181614 | MS.gene53115:intron | 35.0% | |
| TTAATTTAGATGCTTGTGGC+TGG | - | chr5.4:32182494-32182513 | MS.gene53115:intron | 35.0% | |
| TTGAGCGTTTAAATTTGGCT+TGG | - | chr5.4:32182828-32182847 | MS.gene53115:intron | 35.0% | |
| ! | CACTGATACTTTGTTCTAGA+GGG | + | chr5.4:32182241-32182260 | None:intergenic | 35.0% |
| ! | TGAATTATATGTGTCGGTGT+CGG | - | chr5.4:32181422-32181441 | MS.gene53115:CDS | 35.0% |
| ! | TTTCTCCAATTTCTCTAAGG+CGG | + | chr5.4:32182335-32182354 | None:intergenic | 35.0% |
| ! | TTTTCTTAGACACTGCTGAT+GGG | + | chr5.4:32182865-32182884 | None:intergenic | 35.0% |
| !! | AAAAGGCATTGAATTCAGAG+TGG | + | chr5.4:32182041-32182060 | None:intergenic | 35.0% |
| !! | ACTGATACTTTGTTCTAGAG+GGG | + | chr5.4:32182240-32182259 | None:intergenic | 35.0% |
| !! | TGTCATATTTTATTTGGGGG+GGG | - | chr5.4:32182178-32182197 | MS.gene53115:intron | 35.0% |
| AAAAGGAACGATACCTTTGG+AGG | + | chr5.4:32181067-32181086 | None:intergenic | 40.0% | |
| AAGGACACTGGAGATATTTC+AGG | - | chr5.4:32183157-32183176 | MS.gene53115:CDS | 40.0% | |
| AATCATCTTCAGACGTTGCT+TGG | + | chr5.4:32182906-32182925 | None:intergenic | 40.0% | |
| AATGTTGACATTCTGGTGTC+CGG | + | chr5.4:32181370-32181389 | None:intergenic | 40.0% | |
| ATTGCTTCGTACAGTTGTCA+TGG | + | chr5.4:32182693-32182712 | None:intergenic | 40.0% | |
| CCACTGATACTTTGTTCTAG+AGG | + | chr5.4:32182242-32182261 | None:intergenic | 40.0% | |
| GTCTCTGCAGATACAGATAT+TGG | - | chr5.4:32183043-32183062 | MS.gene53115:intron | 40.0% | |
| TCATCCACCACTTGATATTC+TGG | + | chr5.4:32183109-32183128 | None:intergenic | 40.0% | |
| TCGATGTGAAGTAAGTGAAG+AGG | - | chr5.4:32182937-32182956 | MS.gene53115:intron | 40.0% | |
| TGCTGATCGGTTGCTAAAAT+AGG | - | chr5.4:32182382-32182401 | MS.gene53115:intron | 40.0% | |
| ! | CTTTTCTTAGACACTGCTGA+TGG | + | chr5.4:32182866-32182885 | None:intergenic | 40.0% |
| ! | TACCTTTGGAGGAAGAAAAG+AGG | + | chr5.4:32181056-32181075 | None:intergenic | 40.0% |
| !! | ATCAAGTGGTGGATGAAACT+GGG | - | chr5.4:32183113-32183132 | MS.gene53115:intron | 40.0% |
| !! | CCTCTAGAACAAAGTATCAG+TGG | - | chr5.4:32182239-32182258 | MS.gene53115:intron | 40.0% |
| !! | GTCATATTTTATTTGGGGGG+GGG | - | chr5.4:32182179-32182198 | MS.gene53115:intron | 40.0% |
| !! | TATCAAGTGGTGGATGAAAC+TGG | - | chr5.4:32183112-32183131 | MS.gene53115:intron | 40.0% |
| !! | TCATATTTTATTTGGGGGGG+GGG | - | chr5.4:32182180-32182199 | MS.gene53115:intron | 40.0% |
| !! | TTCTCCAATTTCTCTAAGGC+GGG | + | chr5.4:32182334-32182353 | None:intergenic | 40.0% |
| !! | TTGTCATGGTGGAACGTTTT+GGG | + | chr5.4:32182679-32182698 | None:intergenic | 40.0% |
| !!! | GCAAATTAACGGTGCTGTTT+TGG | - | chr5.4:32181146-32181165 | MS.gene53115:CDS | 40.0% |
| ACTGTACGAAGCAATATGCG+TGG | - | chr5.4:32182698-32182717 | MS.gene53115:intron | 45.0% | |
| AGCAACCGATCAGCATAGAA+TGG | + | chr5.4:32182377-32182396 | None:intergenic | 45.0% | |
| CTAAGAAAAGCTCCGTTGCT+AGG | - | chr5.4:32182876-32182895 | MS.gene53115:intron | 45.0% | |
| GAAGAAAAGAGGTGGTTGGA+AGG | + | chr5.4:32181045-32181064 | None:intergenic | 45.0% | |
| GCACAAATACTCCATGGGTT+AGG | + | chr5.4:32181488-32181507 | None:intergenic | 45.0% | |
| GGAGAAAGTTCTCAGCTTCT+TGG | + | chr5.4:32182784-32182803 | None:intergenic | 45.0% | |
| TGAAGCAACAACTCAGACAC+CGG | - | chr5.4:32181348-32181367 | MS.gene53115:CDS | 45.0% | |
| TTGCTTGGCAATCCTAGCAA+CGG | + | chr5.4:32182891-32182910 | None:intergenic | 45.0% | |
| ! | CACCTCTTTTCTTCCTCCAA+AGG | - | chr5.4:32181051-32181070 | MS.gene53115:CDS | 45.0% |
| ! | CTTTGGAGGAAGAAAAGAGG+TGG | + | chr5.4:32181053-32181072 | None:intergenic | 45.0% |
| ! | GCGTGCTCTATCAGATTTTG+TGG | - | chr5.4:32182988-32183007 | MS.gene53115:intron | 45.0% |
| ! | GGGCACTGTAACAGAGTAAA+TGG | + | chr5.4:32183071-32183090 | None:intergenic | 45.0% |
| !! | ATATTTTATTTGGGGGGGGG+GGG | - | chr5.4:32182182-32182201 | MS.gene53115:intron | 45.0% |
| !! | CATATTTTATTTGGGGGGGG+GGG | - | chr5.4:32182181-32182200 | MS.gene53115:intron | 45.0% |
| !! | GTTGTCATGGTGGAACGTTT+TGG | + | chr5.4:32182680-32182699 | None:intergenic | 45.0% |
| !! | TCTCCAATTTCTCTAAGGCG+GGG | + | chr5.4:32182333-32182352 | None:intergenic | 45.0% |
| !! | TGTCATGGTGGAACGTTTTG+GGG | + | chr5.4:32182678-32182697 | None:intergenic | 45.0% |
| !!! | AAGCCTGTTTTTGCAGTCCT+TGG | - | chr5.4:32182728-32182747 | MS.gene53115:intron | 45.0% |
| AAAGAGGTGGTTGGAAGGAG+AGG | + | chr5.4:32181040-32181059 | None:intergenic | 50.0% | |
| AATGGAGGGTCCTGCATATC+TGG | - | chr5.4:32182647-32182666 | MS.gene53115:intron | 50.0% | |
| ACTCTGTTACAGTGCCCGTA+CGG | - | chr5.4:32183074-32183093 | MS.gene53115:intron | 50.0% | |
| CCTCCAAGGACTGCAAAAAC+AGG | + | chr5.4:32182734-32182753 | None:intergenic | 50.0% | |
| GCTTCGTACAGTTGTCATGG+TGG | + | chr5.4:32182690-32182709 | None:intergenic | 50.0% | |
| GGAGGAAGAAAAGAGGTGGT+TGG | + | chr5.4:32181049-32181068 | None:intergenic | 50.0% | |
| GTTCCCCGCCTTAGAGAAAT+TGG | - | chr5.4:32182327-32182346 | MS.gene53115:intron | 50.0% | |
| TGCAGTGACTCTAATGTCGC+CGG | + | chr5.4:32180993-32181012 | None:intergenic | 50.0% | |
| TGGGGTGAATCCAGATATGC+AGG | + | chr5.4:32182660-32182679 | None:intergenic | 50.0% | |
| !! | TATTTTATTTGGGGGGGGGG+GGG | - | chr5.4:32182183-32182202 | MS.gene53115:intron | 50.0% |
| !! | TTCTGGTTTAACCCGCCGTA+CGG | + | chr5.4:32183092-32183111 | None:intergenic | 50.0% |
| !!! | CCTGTTTTTGCAGTCCTTGG+AGG | - | chr5.4:32182731-32182750 | MS.gene53115:intron | 50.0% |
| AGAGGATGTGAGCGATGGAG+TGG | + | chr5.4:32181022-32181041 | None:intergenic | 55.0% | |
| GAAGGAGAGGATGTGAGCGA+TGG | + | chr5.4:32181027-32181046 | None:intergenic | 55.0% | |
| ! | TCTGGTTTAACCCGCCGTAC+GGG | + | chr5.4:32183091-32183110 | None:intergenic | 55.0% |
| !! | ATTTTATTTGGGGGGGGGGG+GGG | - | chr5.4:32182184-32182203 | MS.gene53115:intron | 55.0% |
| !! | CTCCATGGGTTAGGCTGTCT+CGG | + | chr5.4:32181479-32181498 | None:intergenic | 55.0% |
| CACCGAGACAGCCTAACCCA+TGG | - | chr5.4:32181474-32181493 | MS.gene53115:CDS | 60.0% | |
| CTGTTACAGTGCCCGTACGG+CGG | - | chr5.4:32183077-32183096 | MS.gene53115:intron | 60.0% | |
| TGTTACAGTGCCCGTACGGC+GGG | - | chr5.4:32183078-32183097 | MS.gene53115:intron | 60.0% | |
| ! | GGGTTAGGCTGTCTCGGTGT+CGG | + | chr5.4:32181473-32181492 | None:intergenic | 60.0% |
| !! | TTTTATTTGGGGGGGGGGGG+GGG | - | chr5.4:32182185-32182204 | MS.gene53115:intron | 60.0% |
| TTTATTTGGGGGGGGGGGGG+GGG | - | chr5.4:32182186-32182205 | MS.gene53115:intron | 65.0% | |
| !! | GGCTGTCTCGGTGTCGGTGT+CGG | + | chr5.4:32181467-32181486 | None:intergenic | 65.0% |
| TTATTTGGGGGGGGGGGGGG+GGG | - | chr5.4:32182187-32182206 | MS.gene53115:intron | 70.0% | |
| TATTTGGGGGGGGGGGGGGG+GGG | - | chr5.4:32182188-32182207 | MS.gene53115:intron | 75.0% | |
| ! | ATTTGGGGGGGGGGGGGGGG+GGG | - | chr5.4:32182189-32182208 | MS.gene53115:intron | 80.0% |
| ! | TTTGGGGGGGGGGGGGGGGG+GGG | - | chr5.4:32182190-32182209 | MS.gene53115:intron | 85.0% |
| ! | TTGGGGGGGGGGGGGGGGGG+GGG | - | chr5.4:32182191-32182210 | MS.gene53115:intron | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | - | chr5.4:32182192-32182211 | MS.gene53115:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 32180980 | 32183228 | 32180980 | ID=MS.gene53115 |
| chr5.4 | mRNA | 32180980 | 32183228 | 32180980 | ID=MS.gene53115.t1;Parent=MS.gene53115 |
| chr5.4 | exon | 32183136 | 32183228 | 32183136 | ID=MS.gene53115.t1.exon1;Parent=MS.gene53115.t1 |
| chr5.4 | CDS | 32183136 | 32183228 | 32183136 | ID=cds.MS.gene53115.t1;Parent=MS.gene53115.t1 |
| chr5.4 | exon | 32180980 | 32181582 | 32180980 | ID=MS.gene53115.t1.exon2;Parent=MS.gene53115.t1 |
| chr5.4 | CDS | 32180980 | 32181582 | 32180980 | ID=cds.MS.gene53115.t1;Parent=MS.gene53115.t1 |
| Gene Sequence |
| Protein sequence |
