Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54037.t1 | XP_013465324.1 | 89.7 | 902 | 34 | 2 | 120 | 971 | 118 | 1010 | 0.00E+00 | 1540 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54037.t1 | Q9M658 | 42.9 | 406 | 214 | 5 | 552 | 954 | 479 | 869 | 1.9e-80 | 302.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54037.t1 | A0A072VBK5 | 89.7 | 902 | 34 | 2 | 120 | 971 | 118 | 1010 | 0.0e+00 | 1540.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050116 | MS.gene54037 | 0.818315 | 2.09E-52 | -1.69E-46 |
MS.gene052609 | MS.gene54037 | 0.804316 | 2.29E-49 | -1.69E-46 |
MS.gene053486 | MS.gene54037 | 0.804426 | 2.17E-49 | -1.69E-46 |
MS.gene057185 | MS.gene54037 | 0.825414 | 4.75E-54 | -1.69E-46 |
MS.gene057186 | MS.gene54037 | 0.810493 | 1.12E-50 | -1.69E-46 |
MS.gene058919 | MS.gene54037 | 0.805851 | 1.09E-49 | -1.69E-46 |
MS.gene059007 | MS.gene54037 | 0.816288 | 5.98E-52 | -1.69E-46 |
MS.gene060349 | MS.gene54037 | 0.834983 | 2.19E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54037.t1 | MTR_2g095030 | 91.087 | 1021 | 30 | 3 | 1 | 971 | 1 | 1010 | 0.0 | 1863 |
MS.gene54037.t1 | MTR_2g095030 | 91.087 | 1021 | 30 | 3 | 1 | 971 | 1 | 1010 | 0.0 | 1863 |
MS.gene54037.t1 | MTR_7g101465 | 40.749 | 454 | 240 | 5 | 504 | 953 | 457 | 885 | 2.24e-93 | 325 |
MS.gene54037.t1 | MTR_8g008720 | 56.376 | 149 | 13 | 2 | 598 | 746 | 11 | 107 | 6.66e-43 | 154 |
MS.gene54037.t1 | MTR_4g096930 | 31.285 | 358 | 211 | 8 | 522 | 866 | 938 | 1273 | 7.33e-37 | 151 |
MS.gene54037.t1 | MTR_1g013190 | 29.796 | 245 | 148 | 6 | 552 | 796 | 533 | 753 | 3.14e-24 | 110 |
MS.gene54037.t1 | MTR_3g106210 | 27.715 | 267 | 163 | 7 | 535 | 796 | 514 | 755 | 1.09e-22 | 105 |
MS.gene54037.t1 | MTR_3g106210 | 27.715 | 267 | 163 | 7 | 535 | 796 | 514 | 755 | 1.12e-22 | 105 |
MS.gene54037.t1 | MTR_3g106210 | 27.715 | 267 | 163 | 7 | 535 | 796 | 514 | 755 | 1.26e-22 | 105 |
MS.gene54037.t1 | MTR_5g090090 | 27.642 | 246 | 160 | 4 | 551 | 796 | 851 | 1078 | 1.36e-22 | 105 |
MS.gene54037.t1 | MTR_3g106210 | 27.715 | 267 | 163 | 7 | 535 | 796 | 514 | 755 | 1.43e-22 | 105 |
MS.gene54037.t1 | MTR_4g118845 | 29.897 | 291 | 162 | 11 | 524 | 805 | 384 | 641 | 1.50e-22 | 104 |
MS.gene54037.t1 | MTR_5g090090 | 27.642 | 246 | 160 | 4 | 551 | 796 | 851 | 1078 | 1.83e-22 | 104 |
MS.gene54037.t1 | MTR_3g053910 | 28.862 | 246 | 157 | 5 | 551 | 796 | 805 | 1032 | 3.05e-22 | 104 |
MS.gene54037.t1 | MTR_3g053910 | 28.862 | 246 | 157 | 5 | 551 | 796 | 834 | 1061 | 3.67e-22 | 103 |
MS.gene54037.t1 | MTR_4g118845 | 29.897 | 291 | 162 | 11 | 524 | 805 | 197 | 454 | 3.70e-22 | 103 |
MS.gene54037.t1 | MTR_1g105050 | 29.412 | 221 | 128 | 5 | 589 | 809 | 650 | 842 | 9.82e-21 | 99.0 |
MS.gene54037.t1 | MTR_5g005840 | 26.236 | 263 | 146 | 6 | 589 | 851 | 637 | 851 | 3.87e-20 | 97.1 |
MS.gene54037.t1 | MTR_7g039320 | 28.947 | 228 | 124 | 6 | 583 | 799 | 275 | 475 | 5.86e-19 | 93.2 |
MS.gene54037.t1 | MTR_7g039320 | 28.947 | 228 | 124 | 6 | 583 | 799 | 275 | 475 | 6.41e-19 | 92.8 |
MS.gene54037.t1 | MTR_2g020000 | 30.584 | 291 | 160 | 11 | 524 | 805 | 387 | 644 | 2.12e-18 | 91.3 |
MS.gene54037.t1 | MTR_7g045505 | 28.378 | 222 | 121 | 6 | 589 | 799 | 279 | 473 | 5.13e-18 | 90.1 |
MS.gene54037.t1 | MTR_7g045505 | 28.507 | 221 | 120 | 6 | 589 | 798 | 279 | 472 | 5.63e-18 | 90.1 |
MS.gene54037.t1 | MTR_4g118720 | 26.396 | 197 | 125 | 4 | 589 | 785 | 1282 | 1458 | 7.44e-18 | 90.1 |
MS.gene54037.t1 | MTR_5g020000 | 28.500 | 200 | 116 | 5 | 589 | 786 | 467 | 641 | 7.69e-16 | 82.8 |
MS.gene54037.t1 | MTR_5g004720 | 26.341 | 205 | 135 | 5 | 590 | 785 | 476 | 673 | 7.32e-15 | 79.7 |
MS.gene54037.t1 | MTR_4g058650 | 36.364 | 209 | 118 | 5 | 265 | 459 | 33 | 240 | 9.83e-15 | 79.7 |
MS.gene54037.t1 | MTR_7g090960 | 31.169 | 154 | 97 | 3 | 642 | 795 | 1191 | 1335 | 2.20e-14 | 78.6 |
MS.gene54037.t1 | MTR_7g090960 | 31.169 | 154 | 97 | 3 | 642 | 795 | 1110 | 1254 | 2.44e-14 | 78.6 |
MS.gene54037.t1 | MTR_1g053955 | 33.117 | 154 | 94 | 4 | 643 | 796 | 1062 | 1206 | 1.17e-13 | 76.3 |
MS.gene54037.t1 | MTR_7g078090 | 26.519 | 181 | 106 | 4 | 595 | 775 | 1292 | 1445 | 2.36e-13 | 75.5 |
MS.gene54037.t1 | MTR_8g030550 | 25.967 | 181 | 107 | 4 | 595 | 775 | 1284 | 1437 | 3.85e-13 | 74.7 |
MS.gene54037.t1 | MTR_8g030550 | 25.967 | 181 | 107 | 4 | 595 | 775 | 1284 | 1437 | 5.17e-13 | 74.3 |
MS.gene54037.t1 | MTR_8g030550 | 25.967 | 181 | 107 | 4 | 595 | 775 | 1284 | 1437 | 5.69e-13 | 73.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54037.t1 | AT1G08060 | 31.601 | 943 | 516 | 29 | 38 | 954 | 30 | 869 | 1.79e-89 | 315 |
MS.gene54037.t1 | AT1G08060 | 31.601 | 943 | 516 | 29 | 38 | 954 | 30 | 869 | 1.79e-89 | 315 |
MS.gene54037.t1 | AT1G08060 | 31.568 | 944 | 516 | 30 | 38 | 954 | 30 | 870 | 1.18e-88 | 312 |
MS.gene54037.t1 | AT5G44800 | 32.166 | 314 | 182 | 8 | 516 | 821 | 887 | 1177 | 1.36e-37 | 154 |
MS.gene54037.t1 | AT2G25170 | 28.195 | 266 | 163 | 7 | 535 | 796 | 499 | 740 | 2.70e-24 | 110 |
MS.gene54037.t1 | AT2G25170 | 28.195 | 266 | 163 | 7 | 535 | 796 | 499 | 740 | 2.70e-24 | 110 |
MS.gene54037.t1 | AT2G25170 | 28.195 | 266 | 163 | 7 | 535 | 796 | 516 | 757 | 3.75e-24 | 110 |
MS.gene54037.t1 | AT2G25170 | 28.195 | 266 | 163 | 7 | 535 | 796 | 525 | 766 | 4.74e-24 | 110 |
MS.gene54037.t1 | AT4G31900 | 28.731 | 268 | 162 | 6 | 557 | 821 | 456 | 697 | 1.54e-23 | 108 |
MS.gene54037.t1 | AT4G31900 | 28.731 | 268 | 162 | 6 | 557 | 821 | 456 | 697 | 1.59e-23 | 108 |
MS.gene54037.t1 | AT2G13370 | 29.268 | 246 | 154 | 5 | 551 | 796 | 859 | 1084 | 1.87e-23 | 108 |
MS.gene54037.t1 | AT2G13370 | 29.268 | 246 | 154 | 5 | 551 | 796 | 859 | 1084 | 1.87e-23 | 108 |
MS.gene54037.t1 | AT2G13370 | 29.268 | 246 | 154 | 5 | 551 | 796 | 859 | 1084 | 1.87e-23 | 108 |
MS.gene54037.t1 | AT4G31900 | 28.731 | 268 | 162 | 6 | 557 | 821 | 415 | 656 | 3.05e-23 | 107 |
MS.gene54037.t1 | AT3G06010 | 30.317 | 221 | 126 | 6 | 589 | 809 | 677 | 869 | 1.22e-21 | 102 |
MS.gene54037.t1 | AT5G19310 | 27.612 | 268 | 144 | 7 | 589 | 856 | 395 | 612 | 5.55e-21 | 99.8 |
MS.gene54037.t1 | AT5G19310 | 27.612 | 268 | 144 | 7 | 589 | 856 | 659 | 876 | 6.58e-21 | 99.8 |
MS.gene54037.t1 | AT2G44980 | 30.476 | 210 | 119 | 6 | 589 | 798 | 331 | 513 | 7.51e-20 | 95.9 |
MS.gene54037.t1 | AT2G44980 | 29.545 | 220 | 118 | 7 | 589 | 798 | 339 | 531 | 1.46e-18 | 92.0 |
MS.gene54037.t1 | AT2G44980 | 29.545 | 220 | 118 | 7 | 589 | 798 | 340 | 532 | 1.69e-18 | 91.7 |
MS.gene54037.t1 | AT3G06400 | 29.010 | 293 | 162 | 11 | 524 | 805 | 385 | 642 | 3.21e-16 | 84.3 |
MS.gene54037.t1 | AT3G06400 | 29.010 | 293 | 162 | 11 | 524 | 805 | 385 | 642 | 3.32e-16 | 84.3 |
MS.gene54037.t1 | AT3G06400 | 29.010 | 293 | 162 | 11 | 524 | 805 | 385 | 642 | 3.41e-16 | 84.3 |
MS.gene54037.t1 | AT2G28290 | 25.000 | 200 | 124 | 4 | 589 | 785 | 1031 | 1207 | 5.85e-16 | 84.0 |
MS.gene54037.t1 | AT2G28290 | 25.000 | 200 | 124 | 4 | 589 | 785 | 1031 | 1207 | 5.89e-16 | 84.0 |
MS.gene54037.t1 | AT2G28290 | 25.000 | 200 | 124 | 4 | 589 | 785 | 1032 | 1208 | 5.89e-16 | 84.0 |
MS.gene54037.t1 | AT2G28290 | 25.000 | 200 | 124 | 4 | 589 | 785 | 1032 | 1208 | 5.95e-16 | 84.0 |
MS.gene54037.t1 | AT2G28290 | 25.000 | 200 | 124 | 4 | 589 | 785 | 1031 | 1207 | 6.04e-16 | 84.0 |
MS.gene54037.t1 | AT2G28290 | 25.000 | 200 | 124 | 4 | 589 | 785 | 1031 | 1207 | 6.04e-16 | 84.0 |
MS.gene54037.t1 | AT5G18620 | 29.210 | 291 | 164 | 11 | 524 | 805 | 390 | 647 | 3.17e-15 | 81.3 |
MS.gene54037.t1 | AT5G18620 | 29.210 | 291 | 164 | 11 | 524 | 805 | 390 | 647 | 3.17e-15 | 81.3 |
MS.gene54037.t1 | AT3G19210 | 26.733 | 202 | 130 | 6 | 594 | 785 | 474 | 667 | 6.43e-15 | 80.1 |
MS.gene54037.t1 | AT3G19210 | 26.733 | 202 | 130 | 6 | 594 | 785 | 476 | 669 | 7.13e-15 | 80.1 |
MS.gene54037.t1 | AT3G19210 | 26.733 | 202 | 130 | 6 | 594 | 785 | 476 | 669 | 8.64e-15 | 79.7 |
MS.gene54037.t1 | AT3G57300 | 31.818 | 154 | 96 | 3 | 642 | 795 | 1205 | 1349 | 2.49e-14 | 78.6 |
MS.gene54037.t1 | AT3G57300 | 31.818 | 154 | 96 | 3 | 642 | 795 | 1205 | 1349 | 2.49e-14 | 78.6 |
MS.gene54037.t1 | AT3G57300 | 31.818 | 154 | 96 | 3 | 642 | 795 | 1238 | 1382 | 3.12e-14 | 78.2 |
MS.gene54037.t1 | AT2G46020 | 26.455 | 189 | 110 | 5 | 595 | 783 | 1278 | 1437 | 5.50e-14 | 77.4 |
MS.gene54037.t1 | AT2G46020 | 26.455 | 189 | 110 | 5 | 595 | 783 | 1278 | 1437 | 5.50e-14 | 77.4 |
MS.gene54037.t1 | AT2G46020 | 26.455 | 189 | 110 | 5 | 595 | 783 | 1278 | 1437 | 5.50e-14 | 77.4 |
MS.gene54037.t1 | AT2G46020 | 26.455 | 189 | 110 | 5 | 595 | 783 | 1279 | 1438 | 5.51e-14 | 77.4 |
MS.gene54037.t1 | AT2G46020 | 26.455 | 189 | 110 | 5 | 595 | 783 | 1279 | 1438 | 5.51e-14 | 77.4 |
MS.gene54037.t1 | AT2G46020 | 26.455 | 189 | 110 | 5 | 595 | 783 | 1279 | 1438 | 5.51e-14 | 77.4 |
MS.gene54037.t1 | AT3G12810 | 32.468 | 154 | 95 | 4 | 643 | 796 | 1075 | 1219 | 6.67e-13 | 73.9 |
MS.gene54037.t1 | AT3G12810 | 32.468 | 154 | 95 | 4 | 643 | 796 | 1071 | 1215 | 6.84e-13 | 73.9 |
MS.gene54037.t1 | AT2G18760 | 27.700 | 213 | 124 | 7 | 576 | 785 | 675 | 860 | 1.80e-12 | 72.4 |
MS.gene54037.t1 | AT2G18760 | 27.700 | 213 | 124 | 7 | 576 | 785 | 675 | 860 | 1.80e-12 | 72.4 |
MS.gene54037.t1 | AT2G18760 | 27.700 | 213 | 124 | 7 | 576 | 785 | 675 | 860 | 1.80e-12 | 72.4 |
MS.gene54037.t1 | AT2G18760 | 27.700 | 213 | 124 | 7 | 576 | 785 | 675 | 860 | 1.80e-12 | 72.4 |
MS.gene54037.t1 | AT2G18760 | 27.700 | 213 | 124 | 7 | 576 | 785 | 675 | 860 | 1.80e-12 | 72.4 |
MS.gene54037.t1 | AT2G18760 | 27.700 | 213 | 124 | 7 | 576 | 785 | 675 | 860 | 1.80e-12 | 72.4 |
MS.gene54037.t1 | AT2G18760 | 27.700 | 213 | 124 | 7 | 576 | 785 | 734 | 919 | 3.43e-12 | 71.2 |
MS.gene54037.t1 | AT5G66750 | 27.363 | 201 | 119 | 5 | 588 | 786 | 484 | 659 | 4.24e-12 | 70.9 |
Find 208 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAGACTTTCTTCTGGTTTC+AGG | 0.121014 | 2.3:+6764688 | None:intergenic |
TTGCAGCCAATTGGAGTTTC+TGG | 0.127942 | 2.3:-6758692 | MS.gene54037:intron |
GACTTCAATAGTAGATATTT+TGG | 0.151658 | 2.3:-6758666 | MS.gene54037:CDS |
GCAATCAGGCTGTCCTCTTC+TGG | 0.160581 | 2.3:+6763485 | None:intergenic |
CCAATACTCAACCAACTTAT+AGG | 0.217941 | 2.3:+6761615 | None:intergenic |
TGTTGTTAAATGGCAGTAAA+TGG | 0.251621 | 2.3:-6763212 | MS.gene54037:intron |
ATAAGGTACTTGTTGTTAAA+TGG | 0.258650 | 2.3:-6763222 | MS.gene54037:CDS |
CTATAAGTTGGTTGAGTATT+GGG | 0.266587 | 2.3:-6761614 | MS.gene54037:CDS |
AATATTCATGCTCTTCTTGA+TGG | 0.282167 | 2.3:-6761703 | MS.gene54037:CDS |
CCACCTGCCAAATTATTAAA+AGG | 0.282627 | 2.3:+6757912 | None:intergenic |
CTTGCAAATTCTCCTTTGTT+TGG | 0.294283 | 2.3:-6758062 | MS.gene54037:CDS |
GTGATTGCCTTTCTCTTAGA+AGG | 0.299551 | 2.3:+6763357 | None:intergenic |
AACACCAAAGTACCTTTCTT+TGG | 0.302134 | 2.3:+6764397 | None:intergenic |
CGCCAAAGATTGATAGTGTT+GGG | 0.316629 | 2.3:-6761513 | MS.gene54037:CDS |
TTCTCCTTTGTTTGGTGAGC+AGG | 0.318071 | 2.3:-6758054 | MS.gene54037:CDS |
AAGAGGTACCACAAACGTTT+TGG | 0.320834 | 2.3:-6758013 | MS.gene54037:CDS |
TACTATTGTCACCTTTGCTT+TGG | 0.322894 | 2.3:+6763880 | None:intergenic |
CTGTTGTCACCTTCCTGATT+TGG | 0.329278 | 2.3:+6764041 | None:intergenic |
AAGGATGAAGAAAATAATAA+TGG | 0.331335 | 2.3:-6764874 | MS.gene54037:CDS |
GAGGTTGCAATTATCTTTGA+TGG | 0.335688 | 2.3:+6764760 | None:intergenic |
CTTCGTGGCAGCTTGCTTCT+TGG | 0.336052 | 2.3:+6758577 | None:intergenic |
GGTAGGCTCCTCCATGTTGC+TGG | 0.344073 | 2.3:+6758084 | None:intergenic |
TAACCTTCCGGATTGAAATA+AGG | 0.345295 | 2.3:+6761476 | None:intergenic |
ACTCTAGGATTGGCGATAAA+AGG | 0.348369 | 2.3:-6763905 | MS.gene54037:CDS |
CAGGGATTCTTCAATAATAT+AGG | 0.350903 | 2.3:+6759956 | None:intergenic |
TACTGTTGTCAGCTTTGCTT+TGG | 0.353876 | 2.3:+6763721 | None:intergenic |
TTTAGATAACTCATCAATCT+TGG | 0.356158 | 2.3:+6763692 | None:intergenic |
GACTTCCTGCGACAAAGATT+TGG | 0.357254 | 2.3:-6758641 | MS.gene54037:CDS |
CAACAAGTACCTTATTCGTT+TGG | 0.360471 | 2.3:+6763230 | None:intergenic |
CAATCAGGCTGTCCTCTTCT+GGG | 0.365614 | 2.3:+6763486 | None:intergenic |
CCTATAAGTTGGTTGAGTAT+TGG | 0.366376 | 2.3:-6761615 | MS.gene54037:CDS |
CCTTTAGTAGTAAAGGTTGC+AGG | 0.367068 | 2.3:+6759937 | None:intergenic |
TTTAGACAACTCATCAATCT+TGG | 0.367252 | 2.3:+6763851 | None:intergenic |
AGTCATGTTCCAAACGAATA+AGG | 0.367317 | 2.3:-6763239 | MS.gene54037:CDS |
TGTTTGGTGAGCAGGAATTT+AGG | 0.371430 | 2.3:-6758046 | MS.gene54037:CDS |
TTTAGATAACTCGTCAATCT+TGG | 0.373964 | 2.3:+6764010 | None:intergenic |
GACCCTTACAGACTTTCTTC+TGG | 0.376367 | 2.3:+6764681 | None:intergenic |
AGGGATTCTTCAATAATATA+GGG | 0.380308 | 2.3:+6759957 | None:intergenic |
AGCGACCACGCAAGTGGAAC+TGG | 0.390801 | 2.3:-6761842 | MS.gene54037:CDS |
TTTCTTCTGGTTTCAGGAGC+TGG | 0.396574 | 2.3:+6764694 | None:intergenic |
GCCCCAACACTATCAATCTT+TGG | 0.398218 | 2.3:+6761511 | None:intergenic |
AAGTGGAACTGGACACCTTA+AGG | 0.400108 | 2.3:-6761831 | MS.gene54037:intron |
CCAGATCTCGTCAAAGGACT+TGG | 0.402758 | 2.3:+6764637 | None:intergenic |
CCAAGTCCTTTGACGAGATC+TGG | 0.414240 | 2.3:-6764637 | MS.gene54037:CDS |
TCACTTGACACTTTCTCCTT+CGG | 0.414496 | 2.3:+6761664 | None:intergenic |
GTCAGTAACAATGCTGGTCT+TGG | 0.415618 | 2.3:-6763399 | MS.gene54037:CDS |
TCAGCTTTGCTTTGGCACCT+TGG | 0.418871 | 2.3:+6763729 | None:intergenic |
TCATAAGTTGGGGTGTTAGA+TGG | 0.419758 | 2.3:+6763522 | None:intergenic |
TAATATTAGCAAGCCAAATC+AGG | 0.420097 | 2.3:-6764054 | MS.gene54037:CDS |
TTATTATATTTGACAGTGAC+TGG | 0.423324 | 2.3:-6758463 | MS.gene54037:CDS |
TCTAAAAGTGCAGGTTCTCT+TGG | 0.425022 | 2.3:-6764577 | MS.gene54037:CDS |
CCACACTAGTCTCATAAGTT+GGG | 0.433671 | 2.3:+6763511 | None:intergenic |
TTATTGAATTTGCAGCCAAT+TGG | 0.439698 | 2.3:-6758701 | MS.gene54037:intron |
GTCTCCTCTTCGCAGCAATC+AGG | 0.440266 | 2.3:+6763471 | None:intergenic |
CAACTGTCAATCTTCAAGTC+GGG | 0.442138 | 2.3:-6758297 | MS.gene54037:CDS |
AAGAATTGATAATTGTCTTA+CGG | 0.443975 | 2.3:-6758603 | MS.gene54037:CDS |
CCTGCAACCTTTACTACTAA+AGG | 0.445612 | 2.3:-6759937 | MS.gene54037:CDS |
AGTAACAATGCTGGTCTTGG+TGG | 0.447199 | 2.3:-6763396 | MS.gene54037:CDS |
AGATTATTCCAAAACGTTTG+TGG | 0.448392 | 2.3:+6758005 | None:intergenic |
GTTCCTTCCTCATTATCTAA+AGG | 0.450248 | 2.3:-6763315 | MS.gene54037:CDS |
TCAAGGCCCTTTAGTAGTAA+AGG | 0.452061 | 2.3:+6759930 | None:intergenic |
CAGTGAAAGGTGAATATAAA+CGG | 0.455551 | 2.3:+6758369 | None:intergenic |
CTGCAACCTTTACTACTAAA+GGG | 0.460344 | 2.3:-6759936 | MS.gene54037:CDS |
GTCTTTCCAGAAACTCCAAT+TGG | 0.463218 | 2.3:+6758686 | None:intergenic |
GTAACAATGCTGGTCTTGGT+GGG | 0.464546 | 2.3:-6763395 | MS.gene54037:CDS |
GATGCTCTCCCTTCAAAACT+AGG | 0.466915 | 2.3:-6763270 | MS.gene54037:CDS |
AAGTACTCGTTCTAGTCAAA+AGG | 0.469700 | 2.3:-6764899 | MS.gene54037:CDS |
AGGATGAAGAAAATAATAAT+GGG | 0.471183 | 2.3:-6764873 | MS.gene54037:CDS |
TAAAGAGAGACCGATACATC+AGG | 0.472782 | 2.3:+6764425 | None:intergenic |
ACCACACTAGTCTCATAAGT+TGG | 0.474423 | 2.3:+6763510 | None:intergenic |
GCAGAAAATTGTGCGACTCC+TGG | 0.474505 | 2.3:-6763555 | MS.gene54037:CDS |
AAGATTGACAGTTGATGTCC+AGG | 0.475817 | 2.3:+6758306 | None:intergenic |
TCTGTCTCCTTTAGATAATG+AGG | 0.475981 | 2.3:+6763308 | None:intergenic |
TAACCTGCCTTGATTCCATT+GGG | 0.480647 | 2.3:+6757792 | None:intergenic |
TTCACCAACATCAGCTAGAC+AGG | 0.482437 | 2.3:+6758145 | None:intergenic |
AAACCAGAAGAAAGTCTGTA+AGG | 0.485038 | 2.3:-6764684 | MS.gene54037:CDS |
TCGGATACTCAACTTCTTCA+AGG | 0.488143 | 2.3:+6759913 | None:intergenic |
TGGTGGGGAGACAGTTTCAA+TGG | 0.489248 | 2.3:-6757980 | MS.gene54037:CDS |
GCCGTTGCATATCTGAATGT+TGG | 0.489341 | 2.3:-6759876 | MS.gene54037:CDS |
GGGATCTTATATCATTCATC+GGG | 0.492977 | 2.3:+6758438 | None:intergenic |
GAAGTCTGAGCAAGTAGAGA+AGG | 0.494621 | 2.3:-6764725 | MS.gene54037:CDS |
CAGTCATACTCTCTTGATGT+GGG | 0.495048 | 2.3:-6758270 | MS.gene54037:CDS |
GGTACACTTCCATTCGAAGA+TGG | 0.495317 | 2.3:-6763792 | MS.gene54037:CDS |
AGCAAAGCTGACAACAGTAT+TGG | 0.495828 | 2.3:-6763717 | MS.gene54037:CDS |
CTAACCTGCCTTGATTCCAT+TGG | 0.495999 | 2.3:+6757791 | None:intergenic |
CTTGTCGTTAAATATCTTCG+TGG | 0.497386 | 2.3:+6758562 | None:intergenic |
AGAAAGCTTTGATTCTCTCT+AGG | 0.499343 | 2.3:-6758340 | MS.gene54037:CDS |
ATTAGCACCTTCTAAGAGAA+AGG | 0.503047 | 2.3:-6763364 | MS.gene54037:CDS |
TAACAATGCTGGTCTTGGTG+GGG | 0.504302 | 2.3:-6763394 | MS.gene54037:CDS |
TTGCTGTGCCTTCATTCACA+TGG | 0.504874 | 2.3:+6757883 | None:intergenic |
GTTTGTGGTACCTCTTCATC+CGG | 0.506483 | 2.3:+6758020 | None:intergenic |
ACCAGCTGTATCCGATACAT+TGG | 0.507922 | 2.3:+6764807 | None:intergenic |
AATAAAGAAGTCTCAAAGAA+TGG | 0.509972 | 2.3:-6763654 | MS.gene54037:CDS |
GTGATGTCCTTATTTCAATC+CGG | 0.515336 | 2.3:-6761483 | MS.gene54037:CDS |
GAAACTGTTTCTTCCAGCAG+TGG | 0.515731 | 2.3:+6758179 | None:intergenic |
GCTTTGGCACCTTGGCTCGT+CGG | 0.516761 | 2.3:+6763737 | None:intergenic |
TTTGCTGTGGCATCTTCCGA+TGG | 0.516789 | 2.3:+6763942 | None:intergenic |
TGACGAGATCTGGCAAAACT+AGG | 0.516814 | 2.3:-6764627 | MS.gene54037:CDS |
CCTTCAGATTCTAAAAGTGC+AGG | 0.517278 | 2.3:-6764586 | MS.gene54037:CDS |
GCTTTCTCTTCAACAGTGAA+AGG | 0.517856 | 2.3:+6758356 | None:intergenic |
GTCAAATCTAAAACCACTGC+TGG | 0.518113 | 2.3:-6758192 | MS.gene54037:CDS |
AAGATTGATGAGTTGTCTAA+AGG | 0.518469 | 2.3:-6763849 | MS.gene54037:CDS |
CAAAGGAGAATTTGCAAGGT+AGG | 0.519401 | 2.3:+6758067 | None:intergenic |
AAGATTGATGAGTTATCTAA+AGG | 0.520908 | 2.3:-6763690 | MS.gene54037:CDS |
CTTCGCCAAATCTTTGTCGC+AGG | 0.522512 | 2.3:+6758636 | None:intergenic |
AACAATGCTGGTCTTGGTGG+GGG | 0.523275 | 2.3:-6763393 | MS.gene54037:CDS |
AATCAAGTGTCAACTTCTGA+AGG | 0.523667 | 2.3:+6758417 | None:intergenic |
GTGGTTCATCTCAGCGGAGC+CGG | 0.527856 | 2.3:-6757947 | MS.gene54037:CDS |
GCAATTGACATTTGAAGCCA+AGG | 0.529890 | 2.3:-6764512 | MS.gene54037:CDS |
AATGAAGAAGTCTCGAAGAA+TGG | 0.531524 | 2.3:-6763813 | MS.gene54037:CDS |
CCAGCTGTATCCGATACATT+GGG | 0.532302 | 2.3:+6764808 | None:intergenic |
GCTCTTATCCTTCTGCTGCA+CGG | 0.532672 | 2.3:+6761862 | None:intergenic |
GTACACTTCCATTCGAAGAT+GGG | 0.532964 | 2.3:-6763791 | MS.gene54037:CDS |
AGGGATCTTATATCATTCAT+CGG | 0.533852 | 2.3:+6758437 | None:intergenic |
TTTGCTTTCCCATCTTCGAA+TGG | 0.533992 | 2.3:+6763783 | None:intergenic |
TAAAAGGCTGAACTCTCCTC+CGG | 0.534530 | 2.3:+6757928 | None:intergenic |
AAGATTGACGAGTTATCTAA+AGG | 0.535496 | 2.3:-6764008 | MS.gene54037:CDS |
ACGCGGAAGTTGCACCGTCA+TGG | 0.537130 | 2.3:+6758213 | None:intergenic |
AAATGACCGCCCTGATGTAT+CGG | 0.537626 | 2.3:-6764435 | MS.gene54037:CDS |
TCGCCAAAGATTGATAGTGT+TGG | 0.541310 | 2.3:-6761514 | MS.gene54037:CDS |
TCAGTCATACTCTCTTGATG+TGG | 0.541720 | 2.3:-6758271 | MS.gene54037:CDS |
TCCAACATTCAGATATGCAA+CGG | 0.542893 | 2.3:+6759875 | None:intergenic |
TCATCCTGTCTAGCTGATGT+TGG | 0.545160 | 2.3:-6758149 | MS.gene54037:CDS |
ACATTACGAACATTAGTGTC+AGG | 0.548962 | 2.3:-6763450 | MS.gene54037:CDS |
CAAGGAAGTGAATGAAAATG+AGG | 0.550037 | 2.3:-6764494 | MS.gene54037:CDS |
AAAGTTACCCAATGGAATCA+AGG | 0.551364 | 2.3:-6757799 | MS.gene54037:CDS |
CTTTAGTAGTAAAGGTTGCA+GGG | 0.552129 | 2.3:+6759938 | None:intergenic |
TGTGCCTTCATTCACATGGT+CGG | 0.552921 | 2.3:+6757887 | None:intergenic |
ACCACAGTTGACTCTAGGAT+TGG | 0.555381 | 2.3:-6763915 | MS.gene54037:CDS |
AAAAGCACATCCCAATGTAT+CGG | 0.555771 | 2.3:-6764818 | MS.gene54037:CDS |
TGAGGAAACCGTGCAGCAGA+AGG | 0.559354 | 2.3:-6761870 | MS.gene54037:CDS |
TGAGCAGGAATTTAGGTCGC+CGG | 0.563570 | 2.3:-6758039 | MS.gene54037:CDS |
CAAGTCGGACTCCTATAAGT+TGG | 0.564538 | 2.3:-6761626 | MS.gene54037:CDS |
GGTGTCCAGTTCCACTTGCG+TGG | 0.568141 | 2.3:+6761837 | None:intergenic |
GAGTTAACTCTAGGTTGAGT+GGG | 0.569102 | 2.3:-6763593 | MS.gene54037:CDS |
CTCTTTACACAACCAAAGAA+AGG | 0.572404 | 2.3:-6764409 | MS.gene54037:intron |
CTCGTCAAAGGACTTGGCGT+TGG | 0.572857 | 2.3:+6764643 | None:intergenic |
AAGAGACCAGAGTTAACTCT+AGG | 0.573035 | 2.3:-6763602 | MS.gene54037:CDS |
AAGAGACCACAGTTGACTCT+AGG | 0.576346 | 2.3:-6763920 | MS.gene54037:CDS |
TCAACTGTCAATCTTCAAGT+CGG | 0.577543 | 2.3:-6758298 | MS.gene54037:CDS |
TTACGCGACTCCTCGGCTGT+AGG | 0.579110 | 2.3:+6762186 | None:intergenic |
GGGACCGACCATGTGAATGA+AGG | 0.579969 | 2.3:-6757891 | MS.gene54037:CDS |
ACTAGTGTGGTGCCCAGAAG+AGG | 0.581145 | 2.3:-6763498 | MS.gene54037:CDS |
ATTTAGGTCGCCGGATGAAG+AGG | 0.582509 | 2.3:-6758030 | MS.gene54037:CDS |
TGCACATTAGATATCTGTAC+AGG | 0.583301 | 2.3:+6761589 | None:intergenic |
TGTCCTTATTTCAATCCGGA+AGG | 0.583393 | 2.3:-6761479 | MS.gene54037:intron |
TTACCCAATGGAATCAAGGC+AGG | 0.584558 | 2.3:-6757795 | None:intergenic |
ACTCTAGGACCGACGAGCCA+AGG | 0.584887 | 2.3:-6763746 | MS.gene54037:CDS |
TTTGGAATAATCTGTTGGTG+GGG | 0.584951 | 2.3:-6757995 | MS.gene54037:CDS |
CCCAATGTATCGGATACAGC+TGG | 0.586323 | 2.3:-6764808 | MS.gene54037:CDS |
ACACCCACCTCAGTTGCACA+TGG | 0.586554 | 2.3:+6762162 | None:intergenic |
AAGAAACCAGAGTTGACTCT+AGG | 0.587558 | 2.3:-6763761 | MS.gene54037:CDS |
AACTGTCAATCTTCAAGTCG+GGG | 0.588085 | 2.3:-6758296 | MS.gene54037:CDS |
CAGCCTTCATCAAAATCTGT+AGG | 0.595326 | 2.3:-6757825 | MS.gene54037:CDS |
GATAAGAGCGACCACGCAAG+TGG | 0.596892 | 2.3:-6761848 | MS.gene54037:CDS |
AGAGTTAACTCTAGGTTGAG+TGG | 0.600517 | 2.3:-6763594 | MS.gene54037:CDS |
GTTCATCTCAGCGGAGCCGG+AGG | 0.603225 | 2.3:-6757944 | MS.gene54037:CDS |
ACATGGGTTACGCGACTCCT+CGG | 0.605052 | 2.3:+6762179 | None:intergenic |
AACCAGAAGAAAGTCTGTAA+GGG | 0.606060 | 2.3:-6764683 | MS.gene54037:CDS |
TCGTTCTAGTCAAAAGGCCA+AGG | 0.606585 | 2.3:-6764893 | MS.gene54037:CDS |
AAGTCTGAGCAAGTAGAGAA+GGG | 0.606860 | 2.3:-6764724 | MS.gene54037:CDS |
GTAGGTGAAAAGTTACCCAA+TGG | 0.607636 | 2.3:-6757807 | MS.gene54037:CDS |
GACTTGGTCAGTAACAATGC+TGG | 0.607747 | 2.3:-6763405 | MS.gene54037:CDS |
AGCAAAGGTGACAATAGTAG+TGG | 0.610934 | 2.3:-6763876 | MS.gene54037:CDS |
TGAAATAAGGACATCACGAA+TGG | 0.611007 | 2.3:+6761489 | None:intergenic |
CTCTAGGCAAGGTAAGACCC+TGG | 0.611413 | 2.3:-6758324 | MS.gene54037:CDS |
ATGAAGAAAATAATAATGGG+AGG | 0.613173 | 2.3:-6764870 | MS.gene54037:CDS |
TGTATTCGATGATGATGACT+TGG | 0.613466 | 2.3:-6763421 | MS.gene54037:CDS |
ACACAACGTGGAAAGTTCCC+AGG | 0.615041 | 2.3:-6764470 | MS.gene54037:CDS |
GATAAAAGGTGCCAAAGCAA+AGG | 0.615375 | 2.3:-6763891 | MS.gene54037:CDS |
AATGTTGGAATAAAAGCAAG+TGG | 0.615384 | 2.3:-6759861 | MS.gene54037:CDS |
GCTTTGATTCTCTCTAGGCA+AGG | 0.617680 | 2.3:-6758335 | MS.gene54037:CDS |
CAGGAAGGTGACAACAGTAG+TGG | 0.619959 | 2.3:-6764035 | MS.gene54037:CDS |
TGAAGAAAATAATAATGGGA+GGG | 0.620771 | 2.3:-6764869 | MS.gene54037:CDS |
AGATTGACAGTTGATGTCCA+GGG | 0.621974 | 2.3:+6758307 | None:intergenic |
GCCAAAGATTGATAGTGTTG+GGG | 0.622298 | 2.3:-6761512 | MS.gene54037:CDS |
AATTCCTGCTCACCAAACAA+AGG | 0.624272 | 2.3:+6758050 | None:intergenic |
GTCGGTCCTAGAGTCAACTC+TGG | 0.624776 | 2.3:+6763755 | None:intergenic |
TCTCCTTTAGATAATGAGGA+AGG | 0.625074 | 2.3:+6763312 | None:intergenic |
CAAACAAAGGAGAATTTGCA+AGG | 0.628158 | 2.3:+6758063 | None:intergenic |
AGACTTCTGAGTACTTGAAG+AGG | 0.628177 | 2.3:+6764741 | None:intergenic |
GAAGAACGGTACACTGCCAT+CGG | 0.629096 | 2.3:-6763958 | MS.gene54037:CDS |
AACAAAGAAGTATCGAAGAA+CGG | 0.629825 | 2.3:-6763972 | MS.gene54037:CDS |
TCAAAGTGTTGTTCATCCGA+AGG | 0.632497 | 2.3:-6761680 | MS.gene54037:CDS |
CACACTAGTCTCATAAGTTG+GGG | 0.632819 | 2.3:+6763512 | None:intergenic |
TCAGGACATAGATGTCATTG+AGG | 0.637473 | 2.3:-6761888 | MS.gene54037:intron |
ATTAGCAAGCCAAATCAGGA+AGG | 0.637512 | 2.3:-6764050 | MS.gene54037:CDS |
TAATATTATCAGAATGCCCA+AGG | 0.640296 | 2.3:+6764069 | None:intergenic |
AAAGAGAGACCGATACATCA+GGG | 0.640898 | 2.3:+6764426 | None:intergenic |
ATCAAGTGTCAACTTCTGAA+GGG | 0.640928 | 2.3:+6758418 | None:intergenic |
ACAGCCTGATTGCTGCGAAG+AGG | 0.646179 | 2.3:-6763475 | MS.gene54037:CDS |
GCGTAACCCATGTGCAACTG+AGG | 0.653540 | 2.3:-6762169 | MS.gene54037:intron |
AGTCATACTCTCTTGATGTG+GGG | 0.655516 | 2.3:-6758269 | MS.gene54037:CDS |
CACCCACCTCAGTTGCACAT+GGG | 0.661317 | 2.3:+6762163 | None:intergenic |
TTATTGAAAGTCCAGCAACA+TGG | 0.661716 | 2.3:-6758095 | MS.gene54037:CDS |
TATTGCAAACAGATGCAAGT+CGG | 0.667548 | 2.3:-6761641 | MS.gene54037:CDS |
TTAGATGGTATAAATGAACC+AGG | 0.668025 | 2.3:+6763537 | None:intergenic |
TGAAAATGAGGAACACAACG+TGG | 0.669394 | 2.3:-6764482 | MS.gene54037:CDS |
ACTCAACCTAGAGTTAACTC+TGG | 0.670792 | 2.3:+6763596 | None:intergenic |
TTTCAATGGAAGTACTCATG+TGG | 0.671125 | 2.3:-6757966 | MS.gene54037:CDS |
TTGAAAGTCCAGCAACATGG+AGG | 0.688038 | 2.3:-6758092 | MS.gene54037:CDS |
TAAGAGAAAGGCAATCACTG+TGG | 0.699964 | 2.3:-6763352 | MS.gene54037:CDS |
ACTCATGTGGTTCATCTCAG+CGG | 0.702729 | 2.3:-6757953 | MS.gene54037:CDS |
GGGATTTCAGGGTAGCACTG+TGG | 0.703298 | 2.3:-6761734 | MS.gene54037:intron |
GCCAATCCTAGAGTCAACTG+TGG | 0.706585 | 2.3:+6763914 | None:intergenic |
GCTCTCCCTTCAAAACTAGG+TGG | 0.706794 | 2.3:-6763267 | MS.gene54037:CDS |
CCCAACTTATGAGACTAGTG+TGG | 0.722871 | 2.3:-6763511 | MS.gene54037:CDS |
GAGAGACCGATACATCAGGG+CGG | 0.804578 | 2.3:+6764429 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 6757796 | 6764929 | 6757796 | ID=MS.gene54037 |
chr2.3 | mRNA | 6757796 | 6764929 | 6757796 | ID=MS.gene54037.t1;Parent=MS.gene54037 |
chr2.3 | exon | 6764410 | 6764929 | 6764410 | ID=MS.gene54037.t1.exon1;Parent=MS.gene54037.t1 |
chr2.3 | CDS | 6764410 | 6764929 | 6764410 | ID=cds.MS.gene54037.t1;Parent=MS.gene54037.t1 |
chr2.3 | exon | 6763213 | 6764095 | 6763213 | ID=MS.gene54037.t1.exon2;Parent=MS.gene54037.t1 |
chr2.3 | CDS | 6763213 | 6764095 | 6763213 | ID=cds.MS.gene54037.t1;Parent=MS.gene54037.t1 |
chr2.3 | exon | 6762170 | 6762221 | 6762170 | ID=MS.gene54037.t1.exon3;Parent=MS.gene54037.t1 |
chr2.3 | CDS | 6762170 | 6762221 | 6762170 | ID=cds.MS.gene54037.t1;Parent=MS.gene54037.t1 |
chr2.3 | exon | 6761832 | 6761906 | 6761832 | ID=MS.gene54037.t1.exon4;Parent=MS.gene54037.t1 |
chr2.3 | CDS | 6761832 | 6761906 | 6761832 | ID=cds.MS.gene54037.t1;Parent=MS.gene54037.t1 |
chr2.3 | exon | 6761480 | 6761746 | 6761480 | ID=MS.gene54037.t1.exon5;Parent=MS.gene54037.t1 |
chr2.3 | CDS | 6761480 | 6761746 | 6761480 | ID=cds.MS.gene54037.t1;Parent=MS.gene54037.t1 |
chr2.3 | exon | 6759788 | 6759991 | 6759788 | ID=MS.gene54037.t1.exon6;Parent=MS.gene54037.t1 |
chr2.3 | CDS | 6759788 | 6759991 | 6759788 | ID=cds.MS.gene54037.t1;Parent=MS.gene54037.t1 |
chr2.3 | exon | 6757796 | 6758708 | 6757796 | ID=MS.gene54037.t1.exon7;Parent=MS.gene54037.t1 |
chr2.3 | CDS | 6757796 | 6758708 | 6757796 | ID=cds.MS.gene54037.t1;Parent=MS.gene54037.t1 |
Gene Sequence |
Protein sequence |