Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54133.t1 | XP_003596140.2 | 97.3 | 225 | 4 | 1 | 1 | 223 | 49 | 273 | 9.60E-125 | 456.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54133.t1 | Q940T9 | 31.7 | 167 | 95 | 7 | 6 | 165 | 186 | 340 | 3.7e-08 | 60.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54133.t1 | G7ITD4 | 97.3 | 225 | 4 | 1 | 1 | 223 | 42 | 266 | 6.9e-125 | 456.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene54133.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050563 | MS.gene54133 | 0.870333 | 1.58E-66 | -1.69E-46 |
MS.gene050585 | MS.gene54133 | 0.818096 | 2.34E-52 | -1.69E-46 |
MS.gene05143 | MS.gene54133 | 0.818946 | 1.50E-52 | -1.69E-46 |
MS.gene052142 | MS.gene54133 | 0.840559 | 8.08E-58 | -1.69E-46 |
MS.gene052698 | MS.gene54133 | 0.821414 | 4.09E-53 | -1.69E-46 |
MS.gene053383 | MS.gene54133 | 0.868225 | 7.65E-66 | -1.69E-46 |
MS.gene05456 | MS.gene54133 | 0.822474 | 2.32E-53 | -1.69E-46 |
MS.gene055359 | MS.gene54133 | 0.823728 | 1.18E-53 | -1.69E-46 |
MS.gene057022 | MS.gene54133 | 0.812231 | 4.70E-51 | -1.69E-46 |
MS.gene059006 | MS.gene54133 | 0.801891 | 7.27E-49 | -1.69E-46 |
MS.gene059768 | MS.gene54133 | 0.847457 | 1.14E-59 | -1.69E-46 |
MS.gene060691 | MS.gene54133 | 0.825476 | 4.59E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54133.t1 | MTR_2g068730 | 97.333 | 225 | 4 | 1 | 1 | 223 | 42 | 266 | 6.96e-168 | 463 |
MS.gene54133.t1 | MTR_8g098725 | 64.935 | 77 | 27 | 0 | 91 | 167 | 196 | 272 | 6.66e-25 | 100 |
MS.gene54133.t1 | MTR_8g098725 | 64.935 | 77 | 27 | 0 | 91 | 167 | 200 | 276 | 7.06e-25 | 100 |
MS.gene54133.t1 | MTR_5g010120 | 53.933 | 89 | 40 | 1 | 95 | 183 | 149 | 236 | 1.92e-23 | 94.7 |
MS.gene54133.t1 | MTR_1g044785 | 66.667 | 60 | 20 | 0 | 105 | 164 | 119 | 178 | 6.83e-22 | 90.1 |
MS.gene54133.t1 | MTR_1g073350 | 60.870 | 69 | 27 | 0 | 105 | 173 | 301 | 369 | 1.25e-21 | 92.4 |
MS.gene54133.t1 | MTR_2g096080 | 65.079 | 63 | 22 | 0 | 102 | 164 | 137 | 199 | 4.13e-19 | 83.2 |
MS.gene54133.t1 | MTR_4g061823 | 56.716 | 67 | 29 | 0 | 98 | 164 | 123 | 189 | 7.33e-19 | 82.4 |
MS.gene54133.t1 | MTR_4g061910 | 56.716 | 67 | 29 | 0 | 98 | 164 | 123 | 189 | 7.33e-19 | 82.4 |
MS.gene54133.t1 | MTR_3g091340 | 60.000 | 50 | 20 | 0 | 116 | 165 | 197 | 246 | 3.03e-13 | 67.4 |
MS.gene54133.t1 | MTR_3g091340 | 60.000 | 50 | 20 | 0 | 116 | 165 | 190 | 239 | 3.25e-13 | 67.0 |
MS.gene54133.t1 | MTR_3g091340 | 60.000 | 50 | 20 | 0 | 116 | 165 | 226 | 275 | 5.60e-13 | 67.0 |
MS.gene54133.t1 | MTR_1g008220 | 45.312 | 64 | 34 | 1 | 101 | 164 | 214 | 276 | 4.12e-12 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54133.t1 | AT3G12890 | 41.627 | 209 | 103 | 6 | 5 | 213 | 42 | 231 | 2.56e-44 | 149 |
MS.gene54133.t1 | AT5G41380 | 74.194 | 62 | 16 | 0 | 106 | 167 | 201 | 262 | 1.37e-24 | 99.0 |
MS.gene54133.t1 | AT1G63820 | 59.036 | 83 | 32 | 1 | 106 | 186 | 178 | 260 | 3.48e-23 | 95.1 |
MS.gene54133.t1 | AT1G04500 | 47.664 | 107 | 44 | 3 | 59 | 164 | 237 | 332 | 1.16e-21 | 92.0 |
MS.gene54133.t1 | AT1G04500 | 47.664 | 107 | 44 | 3 | 59 | 164 | 237 | 332 | 1.16e-21 | 92.0 |
MS.gene54133.t1 | AT2G33350 | 75.926 | 54 | 13 | 0 | 111 | 164 | 301 | 354 | 1.33e-21 | 92.4 |
MS.gene54133.t1 | AT1G04500 | 43.548 | 124 | 55 | 4 | 59 | 181 | 228 | 337 | 1.47e-21 | 91.7 |
MS.gene54133.t1 | AT2G33350 | 75.926 | 54 | 13 | 0 | 111 | 164 | 302 | 355 | 1.51e-21 | 92.0 |
MS.gene54133.t1 | AT2G33350 | 67.742 | 62 | 20 | 0 | 111 | 172 | 290 | 351 | 1.64e-21 | 92.0 |
MS.gene54133.t1 | AT2G33350 | 75.926 | 54 | 13 | 0 | 111 | 164 | 310 | 363 | 1.79e-21 | 92.0 |
MS.gene54133.t1 | AT5G59990 | 42.149 | 121 | 57 | 5 | 55 | 171 | 103 | 214 | 1.63e-13 | 67.8 |
MS.gene54133.t1 | AT5G53420 | 47.692 | 65 | 33 | 1 | 101 | 164 | 119 | 183 | 2.94e-12 | 63.5 |
MS.gene54133.t1 | AT5G53420 | 47.692 | 65 | 33 | 1 | 101 | 164 | 119 | 183 | 2.94e-12 | 63.5 |
MS.gene54133.t1 | AT5G53420 | 47.692 | 65 | 33 | 1 | 101 | 164 | 119 | 183 | 2.94e-12 | 63.5 |
MS.gene54133.t1 | AT5G53420 | 47.692 | 65 | 33 | 1 | 101 | 164 | 198 | 262 | 3.94e-12 | 64.3 |
MS.gene54133.t1 | AT4G27900 | 53.061 | 49 | 23 | 0 | 116 | 164 | 210 | 258 | 5.68e-12 | 63.9 |
MS.gene54133.t1 | AT4G27900 | 53.061 | 49 | 23 | 0 | 116 | 164 | 210 | 258 | 5.68e-12 | 63.9 |
MS.gene54133.t1 | AT5G24930 | 31.325 | 166 | 97 | 6 | 6 | 165 | 186 | 340 | 4.87e-11 | 62.0 |
Find 43 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCTTCTTGGATTCCAAATT+TGG | 0.102128 | 2.2:-23476514 | MS.gene54133:CDS |
TCTTGTTGCTCAACCAAATT+TGG | 0.128585 | 2.2:+23476501 | None:intergenic |
ATTGTGATGCTTCGGCTTCT+TGG | 0.226368 | 2.2:-23476527 | MS.gene54133:CDS |
ATGCCTGTTTATGATAATTA+TGG | 0.229776 | 2.2:-23476576 | MS.gene54133:CDS |
TTTATTATCAGATTGTAAAA+TGG | 0.231726 | 2.2:-23476463 | MS.gene54133:CDS |
CTAATGTTGCAAGAGAAAAT+TGG | 0.300530 | 2.2:-23476308 | MS.gene54133:CDS |
AATAATCAGCCACATATTAT+TGG | 0.303040 | 2.2:-23476396 | MS.gene54133:CDS |
TGCTGATTCATTTCAGTTCC+AGG | 0.315116 | 2.2:-23475405 | MS.gene54133:intron |
CACATTAATGAAGATTTCTA+TGG | 0.323076 | 2.2:-23475428 | MS.gene54133:CDS |
TCAAGAGGCCATGGCAAGTT+TGG | 0.324460 | 2.2:-23474790 | MS.gene54133:CDS |
TACCTTCCTACCTTTATGTT+TGG | 0.326979 | 2.2:+23475752 | None:intergenic |
GCAACAAGATTTCGCTGTTC+CGG | 0.338361 | 2.2:-23476487 | MS.gene54133:CDS |
TTATTATCAGATTGTAAAAT+GGG | 0.383948 | 2.2:-23476462 | MS.gene54133:CDS |
GCTCCATAATTATCATAAAC+AGG | 0.394748 | 2.2:+23476573 | None:intergenic |
GTCACTTGATTGTGATGCTT+CGG | 0.400739 | 2.2:-23476535 | MS.gene54133:CDS |
GAAAATATATAAGACCTTGA+TGG | 0.404923 | 2.2:+23475658 | None:intergenic |
AATTAATTGCAGGGGATTCA+AGG | 0.434763 | 2.2:-23475794 | MS.gene54133:intron |
TAATGTTGCAAGAGAAAATT+GGG | 0.435066 | 2.2:-23476307 | MS.gene54133:intron |
CATATCATCTGGTGATGAAT+GGG | 0.440400 | 2.2:+23474758 | None:intergenic |
AGTTGAAGAGCCAAACATAA+AGG | 0.442331 | 2.2:-23475762 | MS.gene54133:CDS |
TGATAGAAGAGTAAGAGTGA+GGG | 0.443578 | 2.2:-23475525 | MS.gene54133:CDS |
GAAGAGTAAGAGTGAGGGGA+AGG | 0.444124 | 2.2:-23475520 | MS.gene54133:CDS |
ACATATCATCTGGTGATGAA+TGG | 0.448395 | 2.2:+23474757 | None:intergenic |
GGAGGGTTTCAGAATTTCAA+TGG | 0.461142 | 2.2:-23476429 | MS.gene54133:CDS |
GCAACATTAGGATAAGTTGT+AGG | 0.468600 | 2.2:+23476321 | None:intergenic |
TAATTAATTCACATATCATC+TGG | 0.472556 | 2.2:+23474747 | None:intergenic |
CTGATAGAAGAGTAAGAGTG+AGG | 0.485744 | 2.2:-23475526 | MS.gene54133:CDS |
AGAAGATCAATGTTGTGGTT+TGG | 0.497235 | 2.2:-23476361 | MS.gene54133:CDS |
TTACAATCTGATAATAAAGC+CGG | 0.515082 | 2.2:+23476468 | None:intergenic |
GAAGGTACTCAGAAGAAGAA+AGG | 0.519719 | 2.2:-23475736 | MS.gene54133:CDS |
GATAGAAGAGTAAGAGTGAG+GGG | 0.529042 | 2.2:-23475524 | MS.gene54133:CDS |
GCAGTTAAAGAATGAAGAAG+AGG | 0.550467 | 2.2:-23474820 | MS.gene54133:intron |
AACTCATGACCAATAATATG+TGG | 0.550988 | 2.2:+23476387 | None:intergenic |
GAAGAGCCAAACATAAAGGT+AGG | 0.576416 | 2.2:-23475758 | MS.gene54133:CDS |
AGCCAAACATAAAGGTAGGA+AGG | 0.578415 | 2.2:-23475754 | MS.gene54133:CDS |
TAAAGAATGAAGAAGAGGAC+TGG | 0.579395 | 2.2:-23474815 | MS.gene54133:CDS |
GGACTGGCTTCAAGAGGCCA+TGG | 0.582269 | 2.2:-23474799 | MS.gene54133:CDS |
AAACTTCAACAAAACCATCA+AGG | 0.586667 | 2.2:-23475672 | MS.gene54133:intron |
TAAATAGACCAAACTTGCCA+TGG | 0.601398 | 2.2:+23474782 | None:intergenic |
ACATTAGGATAAGTTGTAGG+TGG | 0.601914 | 2.2:+23476324 | None:intergenic |
AGAAGAGGACTGGCTTCAAG+AGG | 0.645775 | 2.2:-23474805 | MS.gene54133:CDS |
TTTGTAGAAGATCAATGTTG+TGG | 0.662640 | 2.2:-23476366 | MS.gene54133:CDS |
GACATGTGATGAAGATCACA+TGG | 0.673918 | 2.2:-23475480 | MS.gene54133:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAACTTAAAAATTAACTAA+AGG | + | chr2.2:23475245-23475264 | None:intergenic | 10.0% |
!!! | AAGTATATAACTTTTTTTTA+AGG | - | chr2.2:23476344-23476363 | MS.gene54133:CDS | 10.0% |
!!! | CATTTTTATTAGATTTTTTT+TGG | - | chr2.2:23476037-23476056 | MS.gene54133:intron | 10.0% |
!!! | GTTTTTTTTTTTTTTTTGAA+AGG | - | chr2.2:23475410-23475429 | MS.gene54133:CDS | 10.0% |
!!! | TATATACTTTTTTTTTTGTA+GGG | + | chr2.2:23476333-23476352 | None:intergenic | 10.0% |
!!! | TTATATACTTTTTTTTTTGT+AGG | + | chr2.2:23476334-23476353 | None:intergenic | 10.0% |
!! | TATACATGTCTATTTATATT+TGG | + | chr2.2:23475482-23475501 | None:intergenic | 15.0% |
!! | TTATTATCAGATTGTAAAAT+GGG | - | chr2.2:23474869-23474888 | MS.gene54133:intron | 15.0% |
!! | TTTATTATCAGATTGTAAAA+TGG | - | chr2.2:23474868-23474887 | MS.gene54133:intron | 15.0% |
!!! | AAAATTCATCTCTAATTTTA+TGG | + | chr2.2:23476391-23476410 | None:intergenic | 15.0% |
!!! | ATAGTTTAGTACTTTTTTTA+GGG | + | chr2.2:23476085-23476104 | None:intergenic | 15.0% |
!!! | ATATACTTTTTTTTTTGTAG+GGG | + | chr2.2:23476332-23476351 | None:intergenic | 15.0% |
!!! | TATAGTTTAGTACTTTTTTT+AGG | + | chr2.2:23476086-23476105 | None:intergenic | 15.0% |
!! | ATCAATTTAGGAACATAATT+AGG | + | chr2.2:23476481-23476500 | None:intergenic | 20.0% |
!! | TTTAATTCATATACACTAAG+TGG | - | chr2.2:23476174-23476193 | MS.gene54133:intron | 20.0% |
!!! | AACTAAACAGTTTTTATAGT+CGG | + | chr2.2:23476208-23476227 | None:intergenic | 20.0% |
!!! | GAATTTTATTTCAAAGCTAT+GGG | + | chr2.2:23475383-23475402 | None:intergenic | 20.0% |
!!! | TCAAAGTGTTATTTATATCA+TGG | - | chr2.2:23475091-23475110 | MS.gene54133:intron | 20.0% |
!!! | TGAATTTTATTTCAAAGCTA+TGG | + | chr2.2:23475384-23475403 | None:intergenic | 20.0% |
!!! | TTAACTTGAAATTAATTGCA+GGG | - | chr2.2:23475528-23475547 | MS.gene54133:CDS | 20.0% |
!!! | TTTTTGGTGAAAATGTTTAA+CGG | + | chr2.2:23476129-23476148 | None:intergenic | 20.0% |
! | AATAATCAGCCACATATTAT+TGG | - | chr2.2:23474935-23474954 | MS.gene54133:intron | 25.0% |
! | ATGCCTGTTTATGATAATTA+TGG | - | chr2.2:23474755-23474774 | MS.gene54133:CDS | 25.0% |
! | CACATTAATGAAGATTTCTA+TGG | - | chr2.2:23475903-23475922 | MS.gene54133:intron | 25.0% |
! | CATACTGTAAAATTATGTGA+AGG | + | chr2.2:23475767-23475786 | None:intergenic | 25.0% |
! | CTATACAAGAATGAAACATT+AGG | + | chr2.2:23475065-23475084 | None:intergenic | 25.0% |
! | GAAAATATATAAGACCTTGA+TGG | + | chr2.2:23475676-23475695 | None:intergenic | 25.0% |
! | TAACTTGAAATTAATTGCAG+GGG | - | chr2.2:23475529-23475548 | MS.gene54133:CDS | 25.0% |
! | TAATGTTGCAAGAGAAAATT+GGG | - | chr2.2:23475024-23475043 | MS.gene54133:intron | 25.0% |
! | TTACAATCTGATAATAAAGC+CGG | + | chr2.2:23474866-23474885 | None:intergenic | 25.0% |
!! | GATTGTAAAATGGGATTTTA+TGG | - | chr2.2:23474878-23474897 | MS.gene54133:intron | 25.0% |
!! | GTCTACATTTTGTGTTTAAT+TGG | - | chr2.2:23476436-23476455 | MS.gene54133:CDS | 25.0% |
!! | GTCTTATATATTTTCTCACA+TGG | - | chr2.2:23475681-23475700 | MS.gene54133:CDS | 25.0% |
!! | GTTAACTTGAAATTAATTGC+AGG | - | chr2.2:23475527-23475546 | MS.gene54133:CDS | 25.0% |
!! | TTATATATTTTCTCACATGG+TGG | - | chr2.2:23475684-23475703 | MS.gene54133:CDS | 25.0% |
!! | TTTTGGTGAAAATGTTTAAC+GGG | + | chr2.2:23476128-23476147 | None:intergenic | 25.0% |
AAACTTCAACAAAACCATCA+AGG | - | chr2.2:23475659-23475678 | MS.gene54133:intron | 30.0% | |
AACTCATGACCAATAATATG+TGG | + | chr2.2:23474947-23474966 | None:intergenic | 30.0% | |
CAGGTAACTTTCATGATTTA+AGG | - | chr2.2:23475945-23475964 | MS.gene54133:intron | 30.0% | |
CTAATGTTGCAAGAGAAAAT+TGG | - | chr2.2:23475023-23475042 | MS.gene54133:intron | 30.0% | |
CTTAAATCATGAAAGTTACC+TGG | + | chr2.2:23475947-23475966 | None:intergenic | 30.0% | |
GCATAAACAGTCATCAATTT+AGG | + | chr2.2:23476493-23476512 | None:intergenic | 30.0% | |
GCTCCATAATTATCATAAAC+AGG | + | chr2.2:23474761-23474780 | None:intergenic | 30.0% | |
GGGAATTATAGTTAAGTACT+TGG | + | chr2.2:23476065-23476084 | None:intergenic | 30.0% | |
GTGTTGCGACAATAATATAA+AGG | + | chr2.2:23475182-23475201 | None:intergenic | 30.0% | |
TTTGTAGAAGATCAATGTTG+TGG | - | chr2.2:23474965-23474984 | MS.gene54133:intron | 30.0% | |
! | AAAAGTGCACATATGAATGA+TGG | - | chr2.2:23476275-23476294 | MS.gene54133:intron | 30.0% |
! | CAATTTTCTCTTGCAACATT+AGG | + | chr2.2:23475025-23475044 | None:intergenic | 30.0% |
! | GTTTTTCTTGATCAAGTACA+TGG | - | chr2.2:23475113-23475132 | MS.gene54133:intron | 30.0% |
! | TAAACAGTTTTTATAGTCGG+AGG | + | chr2.2:23476205-23476224 | None:intergenic | 30.0% |
! | TCATCTCTAATTTTATGGAG+TGG | + | chr2.2:23476386-23476405 | None:intergenic | 30.0% |
! | TGCTTTTCTTAAGATGTCAA+GGG | + | chr2.2:23475320-23475339 | None:intergenic | 30.0% |
! | TGTAAAATGGGATTTTATGG+TGG | - | chr2.2:23474881-23474900 | MS.gene54133:intron | 30.0% |
! | TTATTGTCGCAACACAATTT+TGG | - | chr2.2:23475187-23475206 | MS.gene54133:intron | 30.0% |
!! | TTGCTTTTCTTAAGATGTCA+AGG | + | chr2.2:23475321-23475340 | None:intergenic | 30.0% |
!!! | ATGATTCTCAAGCTTTTTTG+TGG | + | chr2.2:23475877-23475896 | None:intergenic | 30.0% |
AATTAATTGCAGGGGATTCA+AGG | - | chr2.2:23475537-23475556 | MS.gene54133:CDS | 35.0% | |
ACATTAGGATAAGTTGTAGG+TGG | + | chr2.2:23475010-23475029 | None:intergenic | 35.0% | |
AGAAGATCAATGTTGTGGTT+TGG | - | chr2.2:23474970-23474989 | MS.gene54133:intron | 35.0% | |
AGTTGAAGAGCCAAACATAA+AGG | - | chr2.2:23475569-23475588 | MS.gene54133:intron | 35.0% | |
GCAACATTAGGATAAGTTGT+AGG | + | chr2.2:23475013-23475032 | None:intergenic | 35.0% | |
GCAGTTAAAGAATGAAGAAG+AGG | - | chr2.2:23476511-23476530 | MS.gene54133:CDS | 35.0% | |
TAAAGAATGAAGAAGAGGAC+TGG | - | chr2.2:23476516-23476535 | MS.gene54133:CDS | 35.0% | |
TAAATAGACCAAACTTGCCA+TGG | + | chr2.2:23476552-23476571 | None:intergenic | 35.0% | |
TACCTTCCTACCTTTATGTT+TGG | + | chr2.2:23475582-23475601 | None:intergenic | 35.0% | |
TCTTGTTGCTCAACCAAATT+TGG | + | chr2.2:23474833-23474852 | None:intergenic | 35.0% | |
TGATAGAAGAGTAAGAGTGA+GGG | - | chr2.2:23475806-23475825 | MS.gene54133:intron | 35.0% | |
! | AAAATGGGATTTTATGGTGG+AGG | - | chr2.2:23474884-23474903 | MS.gene54133:intron | 35.0% |
! | ACATATCATCTGGTGATGAA+TGG | + | chr2.2:23476577-23476596 | None:intergenic | 35.0% |
! | CATATCATCTGGTGATGAAT+GGG | + | chr2.2:23476576-23476595 | None:intergenic | 35.0% |
!! | AAATGGGATTTTATGGTGGA+GGG | - | chr2.2:23474885-23474904 | MS.gene54133:intron | 35.0% |
!!! | ACATGGTTTTGAATTGCCAT+TGG | - | chr2.2:23475130-23475149 | MS.gene54133:intron | 35.0% |
AATTGCAAAAGCGACTCCAA+TGG | + | chr2.2:23475149-23475168 | None:intergenic | 40.0% | |
AGCCAAACATAAAGGTAGGA+AGG | - | chr2.2:23475577-23475596 | MS.gene54133:intron | 40.0% | |
CTGATAGAAGAGTAAGAGTG+AGG | - | chr2.2:23475805-23475824 | MS.gene54133:intron | 40.0% | |
GAAGAGCCAAACATAAAGGT+AGG | - | chr2.2:23475573-23475592 | MS.gene54133:intron | 40.0% | |
GACATGTGATGAAGATCACA+TGG | - | chr2.2:23475851-23475870 | MS.gene54133:intron | 40.0% | |
GATAGAAGAGTAAGAGTGAG+GGG | - | chr2.2:23475807-23475826 | MS.gene54133:intron | 40.0% | |
GGAGGGTTTCAGAATTTCAA+TGG | - | chr2.2:23474902-23474921 | MS.gene54133:intron | 40.0% | |
GGCTTCTTGGATTCCAAATT+TGG | - | chr2.2:23474817-23474836 | MS.gene54133:CDS | 40.0% | |
GTCACTTGATTGTGATGCTT+CGG | - | chr2.2:23474796-23474815 | MS.gene54133:CDS | 40.0% | |
!! | GAAGGTACTCAGAAGAAGAA+AGG | - | chr2.2:23475595-23475614 | MS.gene54133:intron | 40.0% |
!! | TGCTGATTCATTTCAGTTCC+AGG | - | chr2.2:23475926-23475945 | MS.gene54133:intron | 40.0% |
ATTGTGATGCTTCGGCTTCT+TGG | - | chr2.2:23474804-23474823 | MS.gene54133:CDS | 45.0% | |
GCAACAAGATTTCGCTGTTC+CGG | - | chr2.2:23474844-23474863 | MS.gene54133:intron | 45.0% | |
!!! | CAAATTAATATTAAATTTTA+AGG | - | chr2.2:23476150-23476169 | MS.gene54133:intron | 5.0% |
!!! | TTTAATATTAATTTGATTTT+TGG | + | chr2.2:23476145-23476164 | None:intergenic | 5.0% |
!!! | TTTTTTTTTTAAAAATTCAT+AGG | - | chr2.2:23475293-23475312 | MS.gene54133:intron | 5.0% |
GAAGAGTAAGAGTGAGGGGA+AGG | - | chr2.2:23475811-23475830 | MS.gene54133:intron | 50.0% | |
TCAAGAGGCCATGGCAAGTT+TGG | - | chr2.2:23476541-23476560 | MS.gene54133:CDS | 50.0% | |
!! | AGAAGAGGACTGGCTTCAAG+AGG | - | chr2.2:23476526-23476545 | MS.gene54133:CDS | 50.0% |
!! | GGACTGGCTTCAAGAGGCCA+TGG | - | chr2.2:23476532-23476551 | MS.gene54133:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 23474755 | 23476598 | 23474755 | ID=MS.gene54133 |
chr2.2 | mRNA | 23474755 | 23476598 | 23474755 | ID=MS.gene54133.t1;Parent=MS.gene54133 |
chr2.2 | exon | 23476308 | 23476598 | 23476308 | ID=MS.gene54133.t1.exon1;Parent=MS.gene54133.t1 |
chr2.2 | CDS | 23476308 | 23476598 | 23476308 | ID=cds.MS.gene54133.t1;Parent=MS.gene54133.t1 |
chr2.2 | exon | 23475673 | 23475804 | 23475673 | ID=MS.gene54133.t1.exon2;Parent=MS.gene54133.t1 |
chr2.2 | CDS | 23475673 | 23475804 | 23475673 | ID=cds.MS.gene54133.t1;Parent=MS.gene54133.t1 |
chr2.2 | exon | 23475406 | 23475570 | 23475406 | ID=MS.gene54133.t1.exon3;Parent=MS.gene54133.t1 |
chr2.2 | CDS | 23475406 | 23475570 | 23475406 | ID=cds.MS.gene54133.t1;Parent=MS.gene54133.t1 |
chr2.2 | exon | 23474755 | 23474838 | 23474755 | ID=MS.gene54133.t1.exon4;Parent=MS.gene54133.t1 |
chr2.2 | CDS | 23474755 | 23474838 | 23474755 | ID=cds.MS.gene54133.t1;Parent=MS.gene54133.t1 |
Gene Sequence |
Protein sequence |