Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54293.t1 | XP_013462565.1 | 94.9 | 683 | 34 | 1 | 1 | 683 | 1 | 682 | 0.00E+00 | 1201.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54293.t1 | G7ZXK0 | 94.9 | 683 | 34 | 1 | 1 | 683 | 1 | 682 | 0.0e+00 | 1201.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene54293 | 0.834453 | 2.97E-56 | -1.69E-46 |
| MS.gene051360 | MS.gene54293 | 0.849098 | 4.02E-60 | -1.69E-46 |
| MS.gene052188 | MS.gene54293 | 0.817418 | 3.33E-52 | -1.69E-46 |
| MS.gene05316 | MS.gene54293 | 0.801979 | 6.97E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene54293 | 0.807118 | 5.91E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene54293 | 0.808404 | 3.15E-50 | -1.69E-46 |
| MS.gene059366 | MS.gene54293 | 0.800521 | 1.39E-48 | -1.69E-46 |
| MS.gene059711 | MS.gene54293 | 0.814139 | 1.79E-51 | -1.69E-46 |
| MS.gene059807 | MS.gene54293 | 0.828561 | 8.40E-55 | -1.69E-46 |
| MS.gene05984 | MS.gene54293 | 0.804054 | 2.60E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene54293 | 0.839957 | 1.16E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54293.t1 | MTR_2g016190 | 95.168 | 683 | 32 | 1 | 1 | 683 | 1 | 682 | 0.0 | 1255 |
| MS.gene54293.t1 | MTR_4g065073 | 39.792 | 480 | 195 | 19 | 1 | 466 | 2 | 401 | 1.90e-63 | 219 |
| MS.gene54293.t1 | MTR_4g065073 | 47.826 | 115 | 49 | 2 | 568 | 671 | 401 | 515 | 8.94e-20 | 93.6 |
| MS.gene54293.t1 | MTR_8g086460 | 39.792 | 480 | 195 | 19 | 1 | 466 | 2 | 401 | 1.90e-63 | 219 |
| MS.gene54293.t1 | MTR_8g086460 | 47.826 | 115 | 49 | 2 | 568 | 671 | 401 | 515 | 8.94e-20 | 93.6 |
| MS.gene54293.t1 | MTR_4g080050 | 36.716 | 335 | 175 | 14 | 1 | 320 | 7 | 319 | 4.03e-45 | 172 |
| MS.gene54293.t1 | MTR_2g093020 | 28.173 | 323 | 168 | 9 | 1 | 319 | 7 | 269 | 2.52e-21 | 97.1 |
| MS.gene54293.t1 | MTR_2g093020 | 28.173 | 323 | 168 | 9 | 1 | 319 | 20 | 282 | 3.58e-21 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54293.t1 | AT1G29240 | 29.779 | 544 | 285 | 23 | 1 | 518 | 1 | 473 | 1.06e-37 | 149 |
| MS.gene54293.t1 | AT2G30990 | 33.033 | 333 | 166 | 13 | 1 | 318 | 8 | 298 | 2.07e-31 | 130 |
| MS.gene54293.t1 | AT2G30990 | 33.033 | 333 | 166 | 13 | 1 | 318 | 8 | 298 | 2.07e-31 | 130 |
| MS.gene54293.t1 | AT2G30990 | 33.033 | 333 | 166 | 13 | 1 | 318 | 8 | 298 | 2.07e-31 | 130 |
| MS.gene54293.t1 | AT2G30990 | 33.033 | 333 | 166 | 13 | 1 | 318 | 8 | 298 | 2.07e-31 | 130 |
| MS.gene54293.t1 | AT2G30990 | 30.539 | 334 | 143 | 12 | 1 | 318 | 8 | 268 | 3.91e-25 | 110 |
| MS.gene54293.t1 | AT2G34170 | 29.894 | 378 | 228 | 16 | 163 | 532 | 79 | 427 | 6.97e-15 | 78.6 |
| MS.gene54293.t1 | AT2G34170 | 29.894 | 378 | 228 | 16 | 163 | 532 | 79 | 427 | 6.97e-15 | 78.6 |
| MS.gene54293.t1 | AT2G34170 | 29.894 | 378 | 228 | 16 | 163 | 532 | 79 | 427 | 6.97e-15 | 78.6 |
| MS.gene54293.t1 | AT2G34170 | 29.894 | 378 | 228 | 16 | 163 | 532 | 79 | 427 | 6.97e-15 | 78.6 |
| MS.gene54293.t1 | AT2G34170 | 29.894 | 378 | 228 | 16 | 163 | 532 | 79 | 427 | 6.97e-15 | 78.6 |
| MS.gene54293.t1 | AT2G34170 | 29.894 | 378 | 228 | 16 | 163 | 532 | 79 | 427 | 6.97e-15 | 78.6 |
Find 125 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATTCAGAAGGCGATTT+TGG | 0.175148 | 2.3:+69277466 | None:intergenic |
| CTTCAAATTGCAAGGTTTAT+TGG | 0.181795 | 2.3:+69277996 | None:intergenic |
| TGCTTCATCTTCATATTCTT+TGG | 0.231607 | 2.3:+69277621 | None:intergenic |
| TCAAACAGGTTTGCTTATTC+AGG | 0.234374 | 2.3:-69278153 | MS.gene54293:CDS |
| TCCTGAATATGAACTTCTTA+TGG | 0.254530 | 2.3:+69277924 | None:intergenic |
| CTTCTTATGGTTCCTTGGTT+TGG | 0.266348 | 2.3:+69277937 | None:intergenic |
| TATGAAATATTAAGTTCTTT+AGG | 0.276345 | 2.3:-69277685 | MS.gene54293:CDS |
| GGCAATTCTACAACTTTATC+TGG | 0.287056 | 2.3:-69277661 | MS.gene54293:CDS |
| ATCTATTCTAACCGCGTTGC+CGG | 0.290201 | 2.3:+69279310 | None:intergenic |
| AGATCTAATACTAGATCTTT+TGG | 0.293809 | 2.3:+69278689 | None:intergenic |
| TATTCAGGTGAGTTGCTTCC+AGG | 0.295367 | 2.3:-69278138 | MS.gene54293:CDS |
| CGCCTTCTGAATCTTGGCTT+TGG | 0.295509 | 2.3:-69277459 | MS.gene54293:CDS |
| GAATTCCTAACATGTAAATT+AGG | 0.295957 | 2.3:+69278798 | None:intergenic |
| TTCTTTCCTTCTTGTGTCTC+AGG | 0.305257 | 2.3:+69278192 | None:intergenic |
| TGTTACCTAATTTACATGTT+AGG | 0.307828 | 2.3:-69278803 | MS.gene54293:CDS |
| CAAAATCGCCTTCTGAATCT+TGG | 0.309915 | 2.3:-69277465 | MS.gene54293:CDS |
| CTATTACCTTTACATCTTCC+AGG | 0.316758 | 2.3:+69279491 | None:intergenic |
| CTGTTGCAGTGCCTTTCAAT+TGG | 0.325258 | 2.3:-69279523 | MS.gene54293:CDS |
| AATGCATGAAAGAATTCTTA+AGG | 0.332402 | 2.3:+69277416 | None:intergenic |
| ACATGTAGAAGCTTTGGATT+TGG | 0.334216 | 2.3:-69277728 | MS.gene54293:CDS |
| ACCATAAGAAGTTCATATTC+AGG | 0.337841 | 2.3:-69277925 | MS.gene54293:CDS |
| TAACACAATTTGCTTCTTGT+TGG | 0.338151 | 2.3:+69277519 | None:intergenic |
| GTGAATGAAGGGTGCTTAAC+AGG | 0.338479 | 2.3:+69279446 | None:intergenic |
| AACTTGGAAGCTAAGAAGTT+TGG | 0.342081 | 2.3:-69279110 | MS.gene54293:CDS |
| CATAAAACATGTAGAAGCTT+TGG | 0.346430 | 2.3:-69277734 | MS.gene54293:CDS |
| ACCTTCTTTACAGCTGGAAT+TGG | 0.356365 | 2.3:+69278660 | None:intergenic |
| GAGTAGAAGGTCTTGTGTTA+AGG | 0.358792 | 2.3:-69279240 | MS.gene54293:CDS |
| TCGTCGTTAACCCCTGTGGC+TGG | 0.361778 | 2.3:-69278771 | MS.gene54293:CDS |
| GAATTCTTAAGGGAATTTAT+AGG | 0.365661 | 2.3:+69277427 | None:intergenic |
| AGAAACTATGACTGCAGAAT+TGG | 0.367734 | 2.3:-69277806 | MS.gene54293:CDS |
| AAGTTCATATTCAGGAAGTT+TGG | 0.370116 | 2.3:-69277917 | MS.gene54293:CDS |
| AAGCAAATTGTGTTAGCTAA+TGG | 0.371518 | 2.3:-69277511 | MS.gene54293:CDS |
| TCTTGACATTCCCCGGTATA+CGG | 0.373865 | 2.3:+69278900 | None:intergenic |
| TGTTGCAGTGCCTTTCAATT+GGG | 0.391757 | 2.3:-69279522 | MS.gene54293:CDS |
| CCAGGAGGAAGCCTAGGAAT+TGG | 0.400075 | 2.3:+69279422 | None:intergenic |
| CAATTGAAAGGCACTGCAAC+AGG | 0.403772 | 2.3:+69279524 | None:intergenic |
| AGAAGAAAATTGAGAGTAGA+AGG | 0.408210 | 2.3:-69279253 | MS.gene54293:CDS |
| ATGAACTTCTTATGGTTCCT+TGG | 0.408592 | 2.3:+69277932 | None:intergenic |
| TCTTTCATGCATTCAAATCA+AGG | 0.415349 | 2.3:-69277406 | MS.gene54293:CDS |
| GATAATTCTGATAGTGTCTT+GGG | 0.420826 | 2.3:-69278840 | MS.gene54293:CDS |
| CAGAAGAAGGCAAGGTAACT+TGG | 0.421503 | 2.3:+69278733 | None:intergenic |
| TTCTTCCTCTTGACATTCCC+CGG | 0.422420 | 2.3:+69278893 | None:intergenic |
| AGATTGTTGTCTACTTCTAC+AGG | 0.427835 | 2.3:+69278065 | None:intergenic |
| ATGCATGAAAGAATTCTTAA+GGG | 0.429740 | 2.3:+69277417 | None:intergenic |
| CAGGTAGACTCTCTCCCTTC+CGG | 0.433558 | 2.3:-69278119 | MS.gene54293:CDS |
| CTTCATTCACTCCAATTCCT+AGG | 0.436745 | 2.3:-69279433 | MS.gene54293:CDS |
| AAGTTCCACAGCTCAGGACT+TGG | 0.449217 | 2.3:-69277976 | MS.gene54293:CDS |
| TGATAATTCTGATAGTGTCT+TGG | 0.459416 | 2.3:-69278841 | MS.gene54293:CDS |
| GGAAGATGTAAAGGTAATAG+TGG | 0.463837 | 2.3:-69279488 | MS.gene54293:CDS |
| TTCAATTGGGAGCATATACC+TGG | 0.463873 | 2.3:-69279509 | MS.gene54293:CDS |
| CTTGCCTTCTTCTGCTTCTG+AGG | 0.469469 | 2.3:-69278724 | MS.gene54293:CDS |
| AATTTGAAGTTCCACAGCTC+AGG | 0.470701 | 2.3:-69277982 | MS.gene54293:CDS |
| TTGTGATAGAGAAAGAGAAA+AGG | 0.473028 | 2.3:-69279288 | MS.gene54293:CDS |
| TCTGATAGTGTCTTGGGTAA+AGG | 0.474262 | 2.3:-69278834 | MS.gene54293:CDS |
| CGTTCAAGAGCAGCCGCTGC+CGG | 0.475439 | 2.3:-69278096 | MS.gene54293:CDS |
| TCCAATTCCAGCTGTAAAGA+AGG | 0.488744 | 2.3:-69278661 | MS.gene54293:intron |
| TGTAAGTGGATTAGATAACT+TGG | 0.489622 | 2.3:-69279126 | MS.gene54293:CDS |
| TGTAGTGTGAGTGGTGTAAG+TGG | 0.490003 | 2.3:-69279140 | MS.gene54293:CDS |
| GATGGAGCAGTGAATCAAAC+AGG | 0.494290 | 2.3:-69278167 | MS.gene54293:CDS |
| CTTTCATGCATTCAAATCAA+GGG | 0.495053 | 2.3:-69277405 | MS.gene54293:CDS |
| CTGTGGAACTTCAAATTGCA+AGG | 0.495828 | 2.3:+69277988 | None:intergenic |
| CAGCGGCTGCTCTTGAACGC+CGG | 0.500453 | 2.3:+69278100 | None:intergenic |
| AGTGAATCTATTTGCAACGT+TGG | 0.501107 | 2.3:+69279358 | None:intergenic |
| AGGCTTGGGAAGCAATTCAT+AGG | 0.501472 | 2.3:-69278242 | MS.gene54293:CDS |
| TGCCACACAGCCATTGGTAA+AGG | 0.501688 | 2.3:-69279384 | MS.gene54293:CDS |
| GGCTGCTCTTGAACGCCGGA+AGG | 0.503308 | 2.3:+69278104 | None:intergenic |
| CGGAAGGGAGAGAGTCTACC+TGG | 0.503457 | 2.3:+69278120 | None:intergenic |
| CTGATATTATACCGTATACC+GGG | 0.505451 | 2.3:-69278911 | MS.gene54293:CDS |
| CTAGGAATTGGAGTGAATGA+AGG | 0.509197 | 2.3:+69279434 | None:intergenic |
| AGCAACTTTGTGCCACGAAA+GGG | 0.510405 | 2.3:+69278042 | None:intergenic |
| AACAAATCTAAGTCTTTCAC+CGG | 0.510412 | 2.3:-69279329 | MS.gene54293:CDS |
| TCTTAAGGGAATTTATAGGC+AGG | 0.510829 | 2.3:+69277431 | None:intergenic |
| CATATACCTGGAAGATGTAA+AGG | 0.513574 | 2.3:-69279497 | MS.gene54293:CDS |
| CCAATTCCTAGGCTTCCTCC+TGG | 0.515401 | 2.3:-69279422 | MS.gene54293:CDS |
| CAAATCTGCCACACAGCCAT+TGG | 0.523138 | 2.3:-69279390 | MS.gene54293:CDS |
| TGGTCATGTTCGCTATTCTC+AGG | 0.524240 | 2.3:-69277293 | MS.gene54293:intron |
| AGTGTCTTGGGTAAAGGATG+TGG | 0.525231 | 2.3:-69278828 | MS.gene54293:CDS |
| CACAAGAAGGAAAGAAGAGA+TGG | 0.527187 | 2.3:-69278185 | MS.gene54293:CDS |
| TTCTTTGACTCTGTTAGCGA+AGG | 0.532241 | 2.3:+69279617 | None:intergenic |
| ACTGATATTATACCGTATAC+CGG | 0.534931 | 2.3:-69278912 | MS.gene54293:CDS |
| AGACAACAATCTCCCTTTCG+TGG | 0.538538 | 2.3:-69278054 | MS.gene54293:CDS |
| CGTCGTTAACCCCTGTGGCT+GGG | 0.541305 | 2.3:-69278770 | MS.gene54293:CDS |
| GTTGCACTGACACGAGTTCA+CGG | 0.542673 | 2.3:+69277575 | None:intergenic |
| ACCTAGAGATGTTAACAAGT+TGG | 0.543738 | 2.3:-69278961 | MS.gene54293:CDS |
| TGCTGTTCCACTAATACAGA+TGG | 0.550161 | 2.3:+69278984 | None:intergenic |
| TTTGGCAATGGTGGTTGAAG+TGG | 0.552216 | 2.3:+69277484 | None:intergenic |
| CTCAGAAGCAGAAGAAGGCA+AGG | 0.554216 | 2.3:+69278725 | None:intergenic |
| GAGGAAGAAAGTGAAGATGA+AGG | 0.554931 | 2.3:-69278879 | MS.gene54293:CDS |
| ACGTTGGATTCCTTTACCAA+TGG | 0.557062 | 2.3:+69279374 | None:intergenic |
| TTTCGTGGCACAAAGTTGCT+CGG | 0.559786 | 2.3:-69278039 | MS.gene54293:CDS |
| ACAACCTCAGAAGCAGAAGA+AGG | 0.563800 | 2.3:+69278720 | None:intergenic |
| ATATTCAGGAAGTTTGGCAA+TGG | 0.563810 | 2.3:-69277911 | MS.gene54293:CDS |
| GGGTGCTTAACAGGAATTTG+AGG | 0.564398 | 2.3:+69279455 | None:intergenic |
| ACTTCTACAGGGAGATATAC+CGG | 0.565280 | 2.3:+69278077 | None:intergenic |
| CTTAAGGGAATTTATAGGCA+GGG | 0.568652 | 2.3:+69277432 | None:intergenic |
| GAAATATTAAGTTCTTTAGG+TGG | 0.570557 | 2.3:-69277682 | MS.gene54293:CDS |
| TTACAAATCAGAAATGTCGT+TGG | 0.571299 | 2.3:-69279561 | MS.gene54293:CDS |
| GCTGCTCTTGAACGCCGGAA+GGG | 0.571777 | 2.3:+69278105 | None:intergenic |
| ACCAACTTGTTAACATCTCT+AGG | 0.572917 | 2.3:+69278960 | None:intergenic |
| TCATAGGAACAAGTCAAGTA+CGG | 0.579635 | 2.3:-69278226 | MS.gene54293:CDS |
| TTCATGCAGGAACTACAGGC+TGG | 0.582455 | 2.3:-69277176 | MS.gene54293:intron |
| AAAACTTCAAATTTGCAGCA+TGG | 0.585819 | 2.3:-69277313 | MS.gene54293:CDS |
| GAAAGGCACTGCAACAGGCT+CGG | 0.585855 | 2.3:+69279529 | None:intergenic |
| GAGCAACTTTGTGCCACGAA+AGG | 0.587284 | 2.3:+69278041 | None:intergenic |
| TCAGAATGCAAAGAAGCCAT+TGG | 0.587399 | 2.3:-69278937 | MS.gene54293:CDS |
| TCTTTGAACTGTAGTGTGAG+TGG | 0.589323 | 2.3:-69279149 | MS.gene54293:CDS |
| ATCATCAAGCAATGTCAAGT+GGG | 0.592931 | 2.3:-69277347 | MS.gene54293:CDS |
| TATCATCAAGCAATGTCAAG+TGG | 0.593140 | 2.3:-69277348 | MS.gene54293:CDS |
| GGTATATGCTCCCAATTGAA+AGG | 0.603809 | 2.3:+69279512 | None:intergenic |
| CAGAATTGGACAAAAGAAGA+GGG | 0.608851 | 2.3:-69277792 | MS.gene54293:CDS |
| TAGGAATTGGAGTGAATGAA+GGG | 0.609667 | 2.3:+69279435 | None:intergenic |
| CGCCAAAGCCAAGATTCAGA+AGG | 0.617248 | 2.3:+69277457 | None:intergenic |
| TTTCGTCTCACTGACATGAG+TGG | 0.617379 | 2.3:+69279653 | None:intergenic |
| GCAGAATTGGACAAAAGAAG+AGG | 0.618216 | 2.3:-69277793 | MS.gene54293:CDS |
| ACAGGGAGATATACCGGCAG+CGG | 0.622172 | 2.3:+69278083 | None:intergenic |
| TTCCTTTACCAATGGCTGTG+TGG | 0.635764 | 2.3:+69279382 | None:intergenic |
| GCATCACCTGAGACACAAGA+AGG | 0.635937 | 2.3:-69278198 | MS.gene54293:CDS |
| ATTGTCGTCGTTAACCCCTG+TGG | 0.643621 | 2.3:-69278775 | MS.gene54293:CDS |
| GAACAAGAAAGATGTCTGAG+AGG | 0.647218 | 2.3:-69279694 | None:intergenic |
| GGTATAATATCAGTTACCAA+TGG | 0.649426 | 2.3:+69278921 | None:intergenic |
| GTATACCGGGGAATGTCAAG+AGG | 0.660002 | 2.3:-69278898 | MS.gene54293:CDS |
| ATTCAAGGAGTTCCAAACCA+AGG | 0.669302 | 2.3:-69277949 | MS.gene54293:CDS |
| GATTGTTGTCTACTTCTACA+GGG | 0.670105 | 2.3:+69278066 | None:intergenic |
| TAAGTCTTTCACCGGCAACG+CGG | 0.704050 | 2.3:-69279321 | MS.gene54293:CDS |
| TGATATTATACCGTATACCG+GGG | 0.709019 | 2.3:-69278910 | MS.gene54293:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGAAATATTAAGTTCTTT+AGG | - | chr2.3:69279149-69279168 | MS.gene54293:CDS | 15.0% |
| !!! | TTTTTTGAAGAATATTGAGA+AGG | + | chr2.3:69277829-69277848 | None:intergenic | 20.0% |
| ! | AATGCATGAAAGAATTCTTA+AGG | + | chr2.3:69279421-69279440 | None:intergenic | 25.0% |
| ! | ATGCATGAAAGAATTCTTAA+GGG | + | chr2.3:69279420-69279439 | None:intergenic | 25.0% |
| ! | GAAATATTAAGTTCTTTAGG+TGG | - | chr2.3:69279152-69279171 | MS.gene54293:CDS | 25.0% |
| ! | GAATTCCTAACATGTAAATT+AGG | + | chr2.3:69278039-69278058 | None:intergenic | 25.0% |
| ! | GAATTCTTAAGGGAATTTAT+AGG | + | chr2.3:69279410-69279429 | None:intergenic | 25.0% |
| ! | GTCTTATATAGGCAAAATTA+TGG | + | chr2.3:69279588-69279607 | None:intergenic | 25.0% |
| ! | TAAGATAGAATCAATTCTGA+AGG | + | chr2.3:69278316-69278335 | None:intergenic | 25.0% |
| ! | TATGGACAAAGGAATTAAAA+AGG | + | chr2.3:69279570-69279589 | None:intergenic | 25.0% |
| ! | TGATCAACAAAAAAGGATTA+AGG | + | chr2.3:69278509-69278528 | None:intergenic | 25.0% |
| ! | TGTTACCTAATTTACATGTT+AGG | - | chr2.3:69278031-69278050 | MS.gene54293:CDS | 25.0% |
| !! | AAAAGGATTAAGGATTTGTT+TGG | + | chr2.3:69278499-69278518 | None:intergenic | 25.0% |
| !! | AAAGGATTAAGGATTTGTTT+GGG | + | chr2.3:69278498-69278517 | None:intergenic | 25.0% |
| !! | AGATCTAATACTAGATCTTT+TGG | + | chr2.3:69278148-69278167 | None:intergenic | 25.0% |
| !!! | AAAATCTACTTTTGTCACAA+CGG | - | chr2.3:69278471-69278490 | MS.gene54293:intron | 25.0% |
| !!! | ACAATTGATTTTGACATGTT+TGG | - | chr2.3:69278265-69278284 | MS.gene54293:intron | 25.0% |
| AAAAAAGCCATCTGTATTAG+TGG | - | chr2.3:69277843-69277862 | MS.gene54293:CDS | 30.0% | |
| AAAACTTCAAATTTGCAGCA+TGG | - | chr2.3:69279521-69279540 | MS.gene54293:CDS | 30.0% | |
| AAAGCTAGAATTTGTAGCTT+TGG | - | chr2.3:69278335-69278354 | MS.gene54293:intron | 30.0% | |
| AACAAATCTAAGTCTTTCAC+CGG | - | chr2.3:69277505-69277524 | MS.gene54293:CDS | 30.0% | |
| AAGCAAATTGTGTTAGCTAA+TGG | - | chr2.3:69279323-69279342 | MS.gene54293:CDS | 30.0% | |
| AAGTTCATATTCAGGAAGTT+TGG | - | chr2.3:69278917-69278936 | MS.gene54293:CDS | 30.0% | |
| AATGTAAAGTGATGTACGTT+TGG | + | chr2.3:69278421-69278440 | None:intergenic | 30.0% | |
| ACCATAAGAAGTTCATATTC+AGG | - | chr2.3:69278909-69278928 | MS.gene54293:CDS | 30.0% | |
| ACTGATATTATACCGTATAC+CGG | - | chr2.3:69277922-69277941 | MS.gene54293:CDS | 30.0% | |
| AGAAGAAAATTGAGAGTAGA+AGG | - | chr2.3:69277581-69277600 | MS.gene54293:CDS | 30.0% | |
| AGGATGTTGATCAACAAAAA+AGG | + | chr2.3:69278516-69278535 | None:intergenic | 30.0% | |
| ATAGGCAAAATTATGGACAA+AGG | + | chr2.3:69279581-69279600 | None:intergenic | 30.0% | |
| ATGTTTGGATATTCTCAAGT+AGG | - | chr2.3:69278280-69278299 | MS.gene54293:intron | 30.0% | |
| CATAAAACATGTAGAAGCTT+TGG | - | chr2.3:69279100-69279119 | MS.gene54293:CDS | 30.0% | |
| CTTCAAATTGCAAGGTTTAT+TGG | + | chr2.3:69278841-69278860 | None:intergenic | 30.0% | |
| CTTTCATGCATTCAAATCAA+GGG | - | chr2.3:69279429-69279448 | MS.gene54293:CDS | 30.0% | |
| GGTATAATATCAGTTACCAA+TGG | + | chr2.3:69277916-69277935 | None:intergenic | 30.0% | |
| GTTCTGTAGATATCAAAAAG+AGG | - | chr2.3:69279003-69279022 | MS.gene54293:CDS | 30.0% | |
| TCCTGAATATGAACTTCTTA+TGG | + | chr2.3:69278913-69278932 | None:intergenic | 30.0% | |
| TCTTTCATGCATTCAAATCA+AGG | - | chr2.3:69279428-69279447 | MS.gene54293:CDS | 30.0% | |
| TGCTTCATCTTCATATTCTT+TGG | + | chr2.3:69279216-69279235 | None:intergenic | 30.0% | |
| TGGATACTTTCATGTAAAAG+TGG | + | chr2.3:69278401-69278420 | None:intergenic | 30.0% | |
| TTACAAATCAGAAATGTCGT+TGG | - | chr2.3:69277273-69277292 | MS.gene54293:intron | 30.0% | |
| TTGTGATAGAGAAAGAGAAA+AGG | - | chr2.3:69277546-69277565 | MS.gene54293:CDS | 30.0% | |
| TTTGGAAGAAAAAGTCACAT+TGG | - | chr2.3:69279124-69279143 | MS.gene54293:CDS | 30.0% | |
| ! | AAGGATTAAGGATTTGTTTG+GGG | + | chr2.3:69278497-69278516 | None:intergenic | 30.0% |
| ! | ACACCTCTTGTAACAATTTT+TGG | + | chr2.3:69278245-69278264 | None:intergenic | 30.0% |
| ! | CTAATACTAGATCTTTTGGT+AGG | + | chr2.3:69278144-69278163 | None:intergenic | 30.0% |
| ! | GATAATTCTGATAGTGTCTT+GGG | - | chr2.3:69277994-69278013 | MS.gene54293:CDS | 30.0% |
| ! | TAACACAATTTGCTTCTTGT+TGG | + | chr2.3:69279318-69279337 | None:intergenic | 30.0% |
| ! | TGATAATTCTGATAGTGTCT+TGG | - | chr2.3:69277993-69278012 | MS.gene54293:CDS | 30.0% |
| ! | TTGTATTGTCATAGCTTTTG+CGG | + | chr2.3:69277806-69277825 | None:intergenic | 30.0% |
| !! | GAGTTGATGTAGTCTTATAT+AGG | + | chr2.3:69279599-69279618 | None:intergenic | 30.0% |
| !! | TGTAAGTGGATTAGATAACT+TGG | - | chr2.3:69277708-69277727 | MS.gene54293:CDS | 30.0% |
| !! | TTCACATTTACTTTTCATGC+AGG | - | chr2.3:69279645-69279664 | MS.gene54293:CDS | 30.0% |
| !!! | TTTTTTACCTTCTTTACAGC+TGG | + | chr2.3:69278183-69278202 | None:intergenic | 30.0% |
| AACTTGGAAGCTAAGAAGTT+TGG | - | chr2.3:69277724-69277743 | MS.gene54293:CDS | 35.0% | |
| ACCTAGAGATGTTAACAAGT+TGG | - | chr2.3:69277873-69277892 | MS.gene54293:CDS | 35.0% | |
| AGAAACTATGACTGCAGAAT+TGG | - | chr2.3:69279028-69279047 | MS.gene54293:CDS | 35.0% | |
| AGACTACATCAACTCAACTA+TGG | - | chr2.3:69279604-69279623 | MS.gene54293:CDS | 35.0% | |
| AGATTGTTGTCTACTTCTAC+AGG | + | chr2.3:69278772-69278791 | None:intergenic | 35.0% | |
| AGTGAATCTATTTGCAACGT+TGG | + | chr2.3:69277479-69277498 | None:intergenic | 35.0% | |
| ATATTCAGGAAGTTTGGCAA+TGG | - | chr2.3:69278923-69278942 | MS.gene54293:CDS | 35.0% | |
| ATCATCAAGCAATGTCAAGT+GGG | - | chr2.3:69279487-69279506 | MS.gene54293:CDS | 35.0% | |
| ATGAACTTCTTATGGTTCCT+TGG | + | chr2.3:69278905-69278924 | None:intergenic | 35.0% | |
| CAGAATTGGACAAAAGAAGA+GGG | - | chr2.3:69279042-69279061 | MS.gene54293:CDS | 35.0% | |
| CATATACCTGGAAGATGTAA+AGG | - | chr2.3:69277337-69277356 | MS.gene54293:CDS | 35.0% | |
| CGAAAACATGTTCATTCATG+AGG | + | chr2.3:69278536-69278555 | None:intergenic | 35.0% | |
| CTATTACCTTTACATCTTCC+AGG | + | chr2.3:69277346-69277365 | None:intergenic | 35.0% | |
| CTGATATTATACCGTATACC+GGG | - | chr2.3:69277923-69277942 | MS.gene54293:CDS | 35.0% | |
| CTTAAGGGAATTTATAGGCA+GGG | + | chr2.3:69279405-69279424 | None:intergenic | 35.0% | |
| GAGCCAAAAATTGTTACAAG+AGG | - | chr2.3:69278239-69278258 | MS.gene54293:CDS | 35.0% | |
| GATTGTTGTCTACTTCTACA+GGG | + | chr2.3:69278771-69278790 | None:intergenic | 35.0% | |
| GGAAGATGTAAAGGTAATAG+TGG | - | chr2.3:69277346-69277365 | MS.gene54293:CDS | 35.0% | |
| GGCAATTCTACAACTTTATC+TGG | - | chr2.3:69279173-69279192 | MS.gene54293:CDS | 35.0% | |
| TAGGAATTGGAGTGAATGAA+GGG | + | chr2.3:69277402-69277421 | None:intergenic | 35.0% | |
| TATCATCAAGCAATGTCAAG+TGG | - | chr2.3:69279486-69279505 | MS.gene54293:CDS | 35.0% | |
| TCAGGACTTGGAAAAATTCA+AGG | - | chr2.3:69278870-69278889 | MS.gene54293:CDS | 35.0% | |
| TCATAGGAACAAGTCAAGTA+CGG | - | chr2.3:69278608-69278627 | MS.gene54293:intron | 35.0% | |
| TCTTAAGGGAATTTATAGGC+AGG | + | chr2.3:69279406-69279425 | None:intergenic | 35.0% | |
| TGATATTATACCGTATACCG+GGG | - | chr2.3:69277924-69277943 | MS.gene54293:CDS | 35.0% | |
| ! | TCAAACAGGTTTGCTTATTC+AGG | - | chr2.3:69278681-69278700 | MS.gene54293:CDS | 35.0% |
| ! | TCAGAAAAAGTCTTTTGCAC+TGG | + | chr2.3:69279284-69279303 | None:intergenic | 35.0% |
| ! | TGATGATGAATCTTTGATGC+AGG | - | chr2.3:69278572-69278591 | MS.gene54293:intron | 35.0% |
| ! | TGTATGTTTGATTTCGCATG+TGG | - | chr2.3:69278214-69278233 | MS.gene54293:CDS | 35.0% |
| !! | ACATGTAGAAGCTTTGGATT+TGG | - | chr2.3:69279106-69279125 | MS.gene54293:CDS | 35.0% |
| !! | ACCAACTTGTTAACATCTCT+AGG | + | chr2.3:69277877-69277896 | None:intergenic | 35.0% |
| ACCTTCTTTACAGCTGGAAT+TGG | + | chr2.3:69278177-69278196 | None:intergenic | 40.0% | |
| ACGTTGGATTCCTTTACCAA+TGG | + | chr2.3:69277463-69277482 | None:intergenic | 40.0% | |
| ACTTCTACAGGGAGATATAC+CGG | + | chr2.3:69278760-69278779 | None:intergenic | 40.0% | |
| ATGAATCTTTGATGCAGGCT+TGG | - | chr2.3:69278577-69278596 | MS.gene54293:intron | 40.0% | |
| ATTCAAGGAGTTCCAAACCA+AGG | - | chr2.3:69278885-69278904 | MS.gene54293:CDS | 40.0% | |
| CAAAATCGCCTTCTGAATCT+TGG | - | chr2.3:69279369-69279388 | MS.gene54293:CDS | 40.0% | |
| CACAAGAAGGAAAGAAGAGA+TGG | - | chr2.3:69278649-69278668 | MS.gene54293:intron | 40.0% | |
| CTAGGAATTGGAGTGAATGA+AGG | + | chr2.3:69277403-69277422 | None:intergenic | 40.0% | |
| CTGTGGAACTTCAAATTGCA+AGG | + | chr2.3:69278849-69278868 | None:intergenic | 40.0% | |
| CTTCATTCACTCCAATTCCT+AGG | - | chr2.3:69277401-69277420 | MS.gene54293:CDS | 40.0% | |
| CTTCTTATGGTTCCTTGGTT+TGG | + | chr2.3:69278900-69278919 | None:intergenic | 40.0% | |
| GAGGAAGAAAGTGAAGATGA+AGG | - | chr2.3:69277955-69277974 | MS.gene54293:CDS | 40.0% | |
| GCAGAATTGGACAAAAGAAG+AGG | - | chr2.3:69279041-69279060 | MS.gene54293:CDS | 40.0% | |
| GGTATATGCTCCCAATTGAA+AGG | + | chr2.3:69277325-69277344 | None:intergenic | 40.0% | |
| TCAGAATGCAAAGAAGCCAT+TGG | - | chr2.3:69277897-69277916 | MS.gene54293:CDS | 40.0% | |
| TCCAATTCCAGCTGTAAAGA+AGG | - | chr2.3:69278173-69278192 | MS.gene54293:CDS | 40.0% | |
| TCTTTGAACTGTAGTGTGAG+TGG | - | chr2.3:69277685-69277704 | MS.gene54293:CDS | 40.0% | |
| TGAATCTTTGATGCAGGCTT+GGG | - | chr2.3:69278578-69278597 | MS.gene54293:intron | 40.0% | |
| TGCTGTTCCACTAATACAGA+TGG | + | chr2.3:69277853-69277872 | None:intergenic | 40.0% | |
| TGTTGCAGTGCCTTTCAATT+GGG | - | chr2.3:69277312-69277331 | MS.gene54293:CDS | 40.0% | |
| TTCTTTCCTTCTTGTGTCTC+AGG | + | chr2.3:69278645-69278664 | None:intergenic | 40.0% | |
| TTCTTTGACTCTGTTAGCGA+AGG | + | chr2.3:69277220-69277239 | None:intergenic | 40.0% | |
| ! | AATTTGAAGTTCCACAGCTC+AGG | - | chr2.3:69278852-69278871 | MS.gene54293:CDS | 40.0% |
| ! | ACTTTTCATGCAGGAACTAC+AGG | - | chr2.3:69279654-69279673 | MS.gene54293:CDS | 40.0% |
| ! | CAAGATTCAGAAGGCGATTT+TGG | + | chr2.3:69279371-69279390 | None:intergenic | 40.0% |
| ! | GAGTAGAAGGTCTTGTGTTA+AGG | - | chr2.3:69277594-69277613 | MS.gene54293:CDS | 40.0% |
| ! | TCTGATAGTGTCTTGGGTAA+AGG | - | chr2.3:69278000-69278019 | MS.gene54293:CDS | 40.0% |
| ! | TTCAATTGGGAGCATATACC+TGG | - | chr2.3:69277325-69277344 | MS.gene54293:CDS | 40.0% |
| !! | GATTTGACTGATTTTCCAGG+AGG | + | chr2.3:69277430-69277449 | None:intergenic | 40.0% |
| !! | GCAGATTTGACTGATTTTCC+AGG | + | chr2.3:69277433-69277452 | None:intergenic | 40.0% |
| ACAACCTCAGAAGCAGAAGA+AGG | + | chr2.3:69278117-69278136 | None:intergenic | 45.0% | |
| AGACAACAATCTCCCTTTCG+TGG | - | chr2.3:69278780-69278799 | MS.gene54293:CDS | 45.0% | |
| AGCAACTTTGTGCCACGAAA+GGG | + | chr2.3:69278795-69278814 | None:intergenic | 45.0% | |
| AGGCTTGGGAAGCAATTCAT+AGG | - | chr2.3:69278592-69278611 | MS.gene54293:intron | 45.0% | |
| AGTGTCTTGGGTAAAGGATG+TGG | - | chr2.3:69278006-69278025 | MS.gene54293:CDS | 45.0% | |
| ATCTATTCTAACCGCGTTGC+CGG | + | chr2.3:69277527-69277546 | None:intergenic | 45.0% | |
| CAGAAGAAGGCAAGGTAACT+TGG | + | chr2.3:69278104-69278123 | None:intergenic | 45.0% | |
| CTGTTGCAGTGCCTTTCAAT+TGG | - | chr2.3:69277311-69277330 | MS.gene54293:CDS | 45.0% | |
| GATGGAGCAGTGAATCAAAC+AGG | - | chr2.3:69278667-69278686 | MS.gene54293:CDS | 45.0% | |
| GGGTGCTTAACAGGAATTTG+AGG | + | chr2.3:69277382-69277401 | None:intergenic | 45.0% | |
| TATTCAGGTGAGTTGCTTCC+AGG | - | chr2.3:69278696-69278715 | MS.gene54293:CDS | 45.0% | |
| TCTTGACATTCCCCGGTATA+CGG | + | chr2.3:69277937-69277956 | None:intergenic | 45.0% | |
| TGGTCATGTTCGCTATTCTC+AGG | - | chr2.3:69279541-69279560 | MS.gene54293:CDS | 45.0% | |
| TGTAGTGTGAGTGGTGTAAG+TGG | - | chr2.3:69277694-69277713 | MS.gene54293:CDS | 45.0% | |
| TTCCTTTACCAATGGCTGTG+TGG | + | chr2.3:69277455-69277474 | None:intergenic | 45.0% | |
| TTCTTCCTCTTGACATTCCC+CGG | + | chr2.3:69277944-69277963 | None:intergenic | 45.0% | |
| TTTCGTCTCACTGACATGAG+TGG | + | chr2.3:69277184-69277203 | None:intergenic | 45.0% | |
| TTTCGTGGCACAAAGTTGCT+CGG | - | chr2.3:69278795-69278814 | MS.gene54293:CDS | 45.0% | |
| TTTGGCAATGGTGGTTGAAG+TGG | + | chr2.3:69279353-69279372 | None:intergenic | 45.0% | |
| ! | ATTGTCATAGCTTTTGCGGC+TGG | + | chr2.3:69277802-69277821 | None:intergenic | 45.0% |
| ! | TCATTTTCATCCCAGCCACA+GGG | + | chr2.3:69278077-69278096 | None:intergenic | 45.0% |
| ! | TTCATTTTCATCCCAGCCAC+AGG | + | chr2.3:69278078-69278097 | None:intergenic | 45.0% |
| ! | TTTTTCCAAGTCCTGAGCTG+TGG | + | chr2.3:69278866-69278885 | None:intergenic | 45.0% |
| !! | CAATTGAAAGGCACTGCAAC+AGG | + | chr2.3:69277313-69277332 | None:intergenic | 45.0% |
| !! | GTGAATGAAGGGTGCTTAAC+AGG | + | chr2.3:69277391-69277410 | None:intergenic | 45.0% |
| !! | TCAGAAGGCGATTTTGGCAA+TGG | + | chr2.3:69279365-69279384 | None:intergenic | 45.0% |
| AAGTTCCACAGCTCAGGACT+TGG | - | chr2.3:69278858-69278877 | MS.gene54293:CDS | 50.0% | |
| ATTGTCGTCGTTAACCCCTG+TGG | - | chr2.3:69278059-69278078 | MS.gene54293:CDS | 50.0% | |
| CAAATCTGCCACACAGCCAT+TGG | - | chr2.3:69277444-69277463 | MS.gene54293:CDS | 50.0% | |
| CGCCAAAGCCAAGATTCAGA+AGG | + | chr2.3:69279380-69279399 | None:intergenic | 50.0% | |
| CGCCTTCTGAATCTTGGCTT+TGG | - | chr2.3:69279375-69279394 | MS.gene54293:CDS | 50.0% | |
| CTCAGAAGCAGAAGAAGGCA+AGG | + | chr2.3:69278112-69278131 | None:intergenic | 50.0% | |
| CTTGCCTTCTTCTGCTTCTG+AGG | - | chr2.3:69278110-69278129 | MS.gene54293:CDS | 50.0% | |
| GAGCAACTTTGTGCCACGAA+AGG | + | chr2.3:69278796-69278815 | None:intergenic | 50.0% | |
| GCATCACCTGAGACACAAGA+AGG | - | chr2.3:69278636-69278655 | MS.gene54293:intron | 50.0% | |
| GTATACCGGGGAATGTCAAG+AGG | - | chr2.3:69277936-69277955 | MS.gene54293:CDS | 50.0% | |
| TAAGTCTTTCACCGGCAACG+CGG | - | chr2.3:69277513-69277532 | MS.gene54293:CDS | 50.0% | |
| TGCCACACAGCCATTGGTAA+AGG | - | chr2.3:69277450-69277469 | MS.gene54293:CDS | 50.0% | |
| TTCATGCAGGAACTACAGGC+TGG | - | chr2.3:69279658-69279677 | MS.gene54293:CDS | 50.0% | |
| ! | CATTTTCATCCCAGCCACAG+GGG | + | chr2.3:69278076-69278095 | None:intergenic | 50.0% |
| ! | CTTTTGCGGCTGGCAAGAAA+CGG | + | chr2.3:69277792-69277811 | None:intergenic | 50.0% |
| ! | GATTTTCCAGGAGGAAGCCT+AGG | + | chr2.3:69277421-69277440 | None:intergenic | 50.0% |
| ! | GTTGCACTGACACGAGTTCA+CGG | + | chr2.3:69279262-69279281 | None:intergenic | 50.0% |
| !! | GAAGGCGATTTTGGCAATGG+TGG | + | chr2.3:69279362-69279381 | None:intergenic | 50.0% |
| ACAGGGAGATATACCGGCAG+CGG | + | chr2.3:69278754-69278773 | None:intergenic | 55.0% | |
| CAGGTAGACTCTCTCCCTTC+CGG | - | chr2.3:69278715-69278734 | MS.gene54293:CDS | 55.0% | |
| CCAATTCCTAGGCTTCCTCC+TGG | - | chr2.3:69277412-69277431 | MS.gene54293:CDS | 55.0% | |
| CCAGGAGGAAGCCTAGGAAT+TGG | + | chr2.3:69277415-69277434 | None:intergenic | 55.0% | |
| !! | GAAAGGCACTGCAACAGGCT+CGG | + | chr2.3:69277308-69277327 | None:intergenic | 55.0% |
| CGGAAGGGAGAGAGTCTACC+TGG | + | chr2.3:69278717-69278736 | None:intergenic | 60.0% | |
| CGTCGTTAACCCCTGTGGCT+GGG | - | chr2.3:69278064-69278083 | MS.gene54293:CDS | 60.0% | |
| GCTGCTCTTGAACGCCGGAA+GGG | + | chr2.3:69278732-69278751 | None:intergenic | 60.0% | |
| TCGTCGTTAACCCCTGTGGC+TGG | - | chr2.3:69278063-69278082 | MS.gene54293:CDS | 60.0% | |
| CAGCGGCTGCTCTTGAACGC+CGG | + | chr2.3:69278737-69278756 | None:intergenic | 65.0% | |
| CGTTCAAGAGCAGCCGCTGC+CGG | - | chr2.3:69278738-69278757 | MS.gene54293:CDS | 65.0% | |
| GGCTGCTCTTGAACGCCGGA+AGG | + | chr2.3:69278733-69278752 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 69277151 | 69279705 | 69277151 | ID=MS.gene54293 |
| chr2.3 | mRNA | 69277151 | 69279705 | 69277151 | ID=MS.gene54293.t1;Parent=MS.gene54293 |
| chr2.3 | exon | 69278662 | 69279705 | 69278662 | ID=MS.gene54293.t1.exon1;Parent=MS.gene54293.t1 |
| chr2.3 | CDS | 69278662 | 69279705 | 69278662 | ID=cds.MS.gene54293.t1;Parent=MS.gene54293.t1 |
| chr2.3 | exon | 69277294 | 69278262 | 69277294 | ID=MS.gene54293.t1.exon2;Parent=MS.gene54293.t1 |
| chr2.3 | CDS | 69277294 | 69278262 | 69277294 | ID=cds.MS.gene54293.t1;Parent=MS.gene54293.t1 |
| chr2.3 | exon | 69277151 | 69277189 | 69277151 | ID=MS.gene54293.t1.exon3;Parent=MS.gene54293.t1 |
| chr2.3 | CDS | 69277151 | 69277189 | 69277151 | ID=cds.MS.gene54293.t1;Parent=MS.gene54293.t1 |
| Gene Sequence |
| Protein sequence |
