Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54418.t1 | XP_003621056.2 | 93.5 | 153 | 10 | 0 | 493 | 645 | 26 | 178 | 1.80E-78 | 303.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54418.t1 | Q9SXZ2 | 70.2 | 151 | 44 | 1 | 493 | 643 | 26 | 175 | 3.7e-61 | 237.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54418.t1 | G7KXR8 | 93.5 | 153 | 10 | 0 | 493 | 645 | 21 | 173 | 1.3e-78 | 303.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049232 | MS.gene54418 | 0.828547 | 8.46E-55 | -1.69E-46 |
MS.gene049552 | MS.gene54418 | 0.827164 | 1.82E-54 | -1.69E-46 |
MS.gene049600 | MS.gene54418 | 0.824304 | 8.68E-54 | -1.69E-46 |
MS.gene050496 | MS.gene54418 | 0.800814 | 1.21E-48 | -1.69E-46 |
MS.gene05118 | MS.gene54418 | 0.806179 | 9.33E-50 | -1.69E-46 |
MS.gene056046 | MS.gene54418 | 0.818067 | 2.38E-52 | -1.69E-46 |
MS.gene056504 | MS.gene54418 | 0.805423 | 1.34E-49 | -1.69E-46 |
MS.gene059034 | MS.gene54418 | 0.800689 | 1.28E-48 | -1.69E-46 |
MS.gene059837 | MS.gene54418 | 0.813261 | 2.80E-51 | -1.69E-46 |
MS.gene060778 | MS.gene54418 | 0.831224 | 1.88E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54418.t1 | MTR_7g006630 | 92.857 | 154 | 11 | 0 | 492 | 645 | 20 | 173 | 1.50e-100 | 304 |
MS.gene54418.t1 | MTR_7g006690 | 88.312 | 154 | 18 | 0 | 492 | 645 | 25 | 178 | 3.53e-97 | 296 |
MS.gene54418.t1 | MTR_6g033040 | 73.684 | 152 | 39 | 1 | 492 | 643 | 25 | 175 | 2.08e-77 | 244 |
MS.gene54418.t1 | MTR_7g084970 | 73.333 | 150 | 39 | 1 | 492 | 641 | 25 | 173 | 4.68e-75 | 238 |
MS.gene54418.t1 | MTR_7g085020 | 64.901 | 151 | 52 | 1 | 493 | 643 | 27 | 176 | 1.51e-65 | 213 |
MS.gene54418.t1 | MTR_1148s0010 | 33.333 | 534 | 268 | 16 | 70 | 532 | 31 | 547 | 3.24e-64 | 223 |
MS.gene54418.t1 | MTR_7g085040 | 64.085 | 142 | 50 | 1 | 501 | 642 | 30 | 170 | 2.32e-61 | 202 |
MS.gene54418.t1 | MTR_0020s0120 | 56.376 | 149 | 64 | 1 | 493 | 641 | 25 | 172 | 7.66e-55 | 184 |
MS.gene54418.t1 | MTR_6g048830 | 38.983 | 295 | 106 | 5 | 78 | 339 | 1 | 254 | 1.88e-54 | 187 |
MS.gene54418.t1 | MTR_0020s0120 | 54.362 | 149 | 60 | 2 | 493 | 641 | 25 | 165 | 6.98e-50 | 171 |
MS.gene54418.t1 | MTR_7g104460 | 55.634 | 142 | 62 | 1 | 501 | 641 | 33 | 174 | 1.94e-49 | 170 |
MS.gene54418.t1 | MTR_1g060190 | 53.957 | 139 | 61 | 2 | 495 | 631 | 28 | 165 | 2.88e-48 | 167 |
MS.gene54418.t1 | MTR_2g086270 | 50.000 | 152 | 72 | 3 | 491 | 641 | 25 | 173 | 1.12e-46 | 162 |
MS.gene54418.t1 | MTR_5g073130 | 36.735 | 294 | 141 | 6 | 79 | 336 | 79 | 363 | 1.96e-44 | 164 |
MS.gene54418.t1 | MTR_6g033695 | 32.967 | 364 | 162 | 11 | 182 | 536 | 433 | 723 | 3.21e-40 | 157 |
MS.gene54418.t1 | MTR_6g033695 | 50.893 | 112 | 50 | 3 | 70 | 181 | 225 | 331 | 2.17e-20 | 96.3 |
MS.gene54418.t1 | MTR_8g106840 | 50.360 | 139 | 67 | 2 | 498 | 635 | 30 | 167 | 2.34e-39 | 142 |
MS.gene54418.t1 | MTR_1g062580 | 34.769 | 325 | 152 | 12 | 72 | 346 | 218 | 532 | 2.85e-38 | 151 |
MS.gene54418.t1 | MTR_8g045280 | 32.061 | 393 | 181 | 11 | 182 | 536 | 396 | 740 | 2.02e-35 | 143 |
MS.gene54418.t1 | MTR_8g045280 | 43.103 | 116 | 57 | 3 | 79 | 194 | 197 | 303 | 5.36e-14 | 75.9 |
MS.gene54418.t1 | MTR_2g060030 | 35.971 | 278 | 95 | 8 | 70 | 267 | 198 | 472 | 3.14e-32 | 133 |
MS.gene54418.t1 | MTR_0347s0040 | 65.263 | 95 | 31 | 1 | 67 | 161 | 5 | 97 | 1.13e-30 | 119 |
MS.gene54418.t1 | MTR_4g027930 | 43.137 | 153 | 39 | 3 | 182 | 302 | 31 | 167 | 9.13e-30 | 117 |
MS.gene54418.t1 | MTR_2g067560 | 32.304 | 421 | 193 | 17 | 85 | 493 | 374 | 714 | 1.66e-29 | 125 |
MS.gene54418.t1 | MTR_3g022785 | 50.394 | 127 | 48 | 3 | 183 | 309 | 338 | 449 | 9.31e-28 | 117 |
MS.gene54418.t1 | MTR_6g054900 | 39.306 | 173 | 62 | 5 | 182 | 322 | 60 | 221 | 1.50e-26 | 110 |
MS.gene54418.t1 | MTR_7g033825 | 27.869 | 366 | 212 | 8 | 182 | 535 | 63 | 388 | 5.20e-26 | 114 |
MS.gene54418.t1 | MTR_0242s0010 | 41.772 | 158 | 80 | 4 | 182 | 338 | 344 | 490 | 1.55e-25 | 111 |
MS.gene54418.t1 | MTR_0242s0010 | 46.774 | 124 | 61 | 1 | 37 | 160 | 92 | 210 | 1.80e-21 | 99.0 |
MS.gene54418.t1 | MTR_7g083690 | 30.671 | 313 | 140 | 13 | 99 | 345 | 91 | 392 | 1.73e-25 | 112 |
MS.gene54418.t1 | MTR_5g021380 | 26.488 | 521 | 253 | 19 | 23 | 484 | 22 | 471 | 4.55e-25 | 111 |
MS.gene54418.t1 | MTR_6g453110 | 39.153 | 189 | 96 | 4 | 5 | 174 | 14 | 202 | 3.10e-24 | 103 |
MS.gene54418.t1 | MTR_0073s0040 | 33.862 | 189 | 92 | 2 | 183 | 339 | 85 | 272 | 5.32e-24 | 104 |
MS.gene54418.t1 | MTR_6g024400 | 49.074 | 108 | 54 | 1 | 231 | 338 | 349 | 455 | 1.17e-23 | 106 |
MS.gene54418.t1 | MTR_6g024400 | 53.571 | 56 | 26 | 0 | 86 | 141 | 106 | 161 | 3.92e-11 | 66.6 |
MS.gene54418.t1 | MTR_0031s0120 | 31.443 | 194 | 110 | 5 | 183 | 356 | 183 | 373 | 2.61e-23 | 102 |
MS.gene54418.t1 | MTR_3g022950 | 41.026 | 156 | 87 | 3 | 70 | 222 | 159 | 312 | 3.81e-21 | 99.0 |
MS.gene54418.t1 | MTR_4g061490 | 26.852 | 324 | 144 | 10 | 72 | 317 | 145 | 453 | 1.14e-19 | 93.6 |
MS.gene54418.t1 | MTR_4g044667 | 40.361 | 166 | 92 | 4 | 30 | 190 | 103 | 266 | 2.00e-19 | 91.3 |
MS.gene54418.t1 | MTR_6g052740 | 42.063 | 126 | 65 | 2 | 70 | 195 | 143 | 260 | 2.94e-19 | 89.7 |
MS.gene54418.t1 | MTR_7g050780 | 55.882 | 68 | 30 | 0 | 70 | 137 | 53 | 120 | 4.15e-19 | 84.3 |
MS.gene54418.t1 | MTR_3g049960 | 32.000 | 175 | 92 | 5 | 168 | 337 | 209 | 361 | 1.66e-18 | 89.7 |
MS.gene54418.t1 | MTR_8g103960 | 46.835 | 79 | 41 | 1 | 231 | 309 | 33 | 110 | 2.52e-17 | 79.3 |
MS.gene54418.t1 | MTR_6g039210 | 42.748 | 131 | 61 | 4 | 70 | 187 | 132 | 261 | 3.41e-17 | 84.7 |
MS.gene54418.t1 | MTR_6g036830 | 51.852 | 81 | 37 | 1 | 53 | 131 | 230 | 310 | 3.84e-17 | 84.3 |
MS.gene54418.t1 | MTR_5g054740 | 37.086 | 151 | 75 | 4 | 31 | 161 | 224 | 374 | 2.61e-16 | 83.6 |
MS.gene54418.t1 | MTR_2g056170 | 54.054 | 74 | 32 | 1 | 70 | 143 | 50 | 121 | 1.20e-15 | 76.6 |
MS.gene54418.t1 | MTR_2g438380 | 55.172 | 58 | 25 | 1 | 246 | 303 | 27 | 83 | 2.17e-15 | 72.0 |
MS.gene54418.t1 | MTR_0406s0010 | 54.839 | 62 | 28 | 0 | 70 | 131 | 20 | 81 | 2.64e-15 | 74.7 |
MS.gene54418.t1 | MTR_6g053340 | 51.389 | 72 | 34 | 1 | 231 | 302 | 200 | 270 | 8.62e-15 | 75.5 |
MS.gene54418.t1 | MTR_7g108760 | 26.056 | 284 | 148 | 11 | 202 | 434 | 38 | 310 | 8.22e-14 | 75.1 |
MS.gene54418.t1 | MTR_3g464880 | 38.211 | 123 | 63 | 2 | 72 | 185 | 62 | 180 | 1.47e-13 | 72.0 |
MS.gene54418.t1 | MTR_2g450410 | 32.727 | 110 | 71 | 2 | 169 | 277 | 358 | 465 | 1.62e-13 | 73.6 |
MS.gene54418.t1 | MTR_2g450410 | 47.541 | 61 | 32 | 0 | 70 | 130 | 120 | 180 | 7.16e-11 | 65.5 |
MS.gene54418.t1 | MTR_8g058470 | 25.532 | 282 | 150 | 10 | 202 | 434 | 38 | 308 | 1.64e-13 | 73.9 |
MS.gene54418.t1 | MTR_1g035030 | 56.604 | 53 | 23 | 0 | 72 | 124 | 105 | 157 | 1.73e-13 | 72.4 |
MS.gene54418.t1 | MTR_6g045577 | 53.333 | 60 | 28 | 0 | 72 | 131 | 147 | 206 | 3.11e-12 | 67.8 |
MS.gene54418.t1 | MTR_5g049880 | 53.333 | 60 | 28 | 0 | 72 | 131 | 147 | 206 | 3.11e-12 | 67.8 |
MS.gene54418.t1 | MTR_7g113670 | 35.714 | 112 | 64 | 1 | 70 | 181 | 210 | 313 | 4.41e-12 | 68.2 |
MS.gene54418.t1 | MTR_3g067565 | 50.000 | 62 | 31 | 0 | 70 | 131 | 159 | 220 | 1.38e-11 | 65.9 |
MS.gene54418.t1 | MTR_6g033770 | 48.333 | 60 | 31 | 0 | 72 | 131 | 10 | 69 | 4.42e-11 | 63.5 |
MS.gene54418.t1 | MTR_3g048390 | 24.873 | 197 | 106 | 5 | 183 | 345 | 205 | 393 | 7.52e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54418.t1 | AT1G65480 | 70.199 | 151 | 44 | 1 | 493 | 643 | 70 | 219 | 3.15e-74 | 238 |
MS.gene54418.t1 | AT1G65480 | 69.737 | 152 | 45 | 1 | 492 | 643 | 25 | 175 | 3.74e-74 | 236 |
MS.gene54418.t1 | AT4G20370 | 70.000 | 150 | 44 | 1 | 493 | 642 | 26 | 174 | 4.36e-71 | 228 |
MS.gene54418.t1 | AT5G62040 | 54.667 | 150 | 67 | 1 | 493 | 641 | 25 | 174 | 2.40e-53 | 181 |
MS.gene54418.t1 | AT5G03840 | 57.343 | 143 | 58 | 2 | 501 | 641 | 36 | 177 | 1.67e-51 | 176 |
MS.gene54418.t1 | AT2G27550 | 52.000 | 150 | 71 | 1 | 493 | 641 | 26 | 175 | 1.56e-50 | 173 |
MS.gene54418.t1 | AT1G18100 | 54.110 | 146 | 64 | 2 | 498 | 641 | 29 | 173 | 2.68e-46 | 162 |
Find 170 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAGGTATTCCCTCATATT+AGG | 0.216132 | 7.4:-92865693 | None:intergenic |
CGATCAGACAATTGTTCTTT+AGG | 0.237153 | 7.4:+92857611 | MS.gene54418:CDS |
TTTAATTGTCAAAGAGAAAA+TGG | 0.243680 | 7.4:+92867772 | MS.gene54418:CDS |
TTTGCAGAAGTTTATAATCT+TGG | 0.279344 | 7.4:+92867727 | MS.gene54418:CDS |
TTGAGCCGACGGTGATTTCT+AGG | 0.304174 | 7.4:+92858194 | MS.gene54418:CDS |
TTGCTAGGGCTTGGTCCATC+AGG | 0.306220 | 7.4:-92865669 | None:intergenic |
GATATTCTAGAAACTGATTA+TGG | 0.335517 | 7.4:+92858073 | MS.gene54418:CDS |
TGTTGTTTAGGCAACCTTGT+AGG | 0.357429 | 7.4:+92867656 | MS.gene54418:CDS |
GCAGGTATTCCCTCATATTA+GGG | 0.362646 | 7.4:-92865692 | None:intergenic |
AATTAAAATCATTGAGGAAT+GGG | 0.364859 | 7.4:+92857736 | MS.gene54418:CDS |
CTGCTTGGCACAGGTTTCAT+TGG | 0.365044 | 7.4:+92858117 | MS.gene54418:CDS |
ACTTAGCATGGACACGATAC+TGG | 0.366420 | 7.4:-92856854 | None:intergenic |
GATGAGGTTGAGCGAGGGAG+AGG | 0.368088 | 7.4:+92856911 | MS.gene54418:CDS |
CTGCGCGCGGCATTAGTTGA+AGG | 0.368188 | 7.4:+92856598 | MS.gene54418:CDS |
ATTTAGACATTATTCCTCTT+GGG | 0.372926 | 7.4:+92857365 | MS.gene54418:CDS |
CCCTGTAGTCGCTGGAATAT+TGG | 0.373232 | 7.4:-92866980 | None:intergenic |
CCCTCATATTAGGGTTGCTA+GGG | 0.374720 | 7.4:-92865683 | None:intergenic |
GTGTGATATTTGTGTTGTTT+AGG | 0.376720 | 7.4:+92867644 | MS.gene54418:CDS |
AACATGAATGACGATGTTTA+CGG | 0.383362 | 7.4:+92856762 | MS.gene54418:CDS |
GGGTTTGATTTATGTTGGTT+TGG | 0.384899 | 7.4:+92858153 | MS.gene54418:CDS |
TTAGAAGAAGCTACAGATAA+TGG | 0.388422 | 7.4:+92857899 | MS.gene54418:CDS |
AACACCCTCTCCCTCCTTCC+CGG | 0.389839 | 7.4:-92856964 | None:intergenic |
GGTTTGATTTATGTTGGTTT+GGG | 0.389931 | 7.4:+92858154 | MS.gene54418:CDS |
ATATTAGGGTTGCTAGGGCT+TGG | 0.390387 | 7.4:-92865678 | None:intergenic |
GCTATGAATAATGTGTGTTT+TGG | 0.393128 | 7.4:+92856831 | MS.gene54418:CDS |
GATAGCAACATCGTCATTAG+AGG | 0.398390 | 7.4:+92857664 | MS.gene54418:CDS |
GTCATGTAGCTCAGGATTAT+CGG | 0.399793 | 7.4:-92857822 | None:intergenic |
CGGTCAATTCGTCATTCAAA+TGG | 0.406816 | 7.4:+92856629 | MS.gene54418:CDS |
TTACAAATTCAGTGTCTTTG+AGG | 0.412870 | 7.4:+92864147 | MS.gene54418:intron |
TGTCAAAGAGAAAATGGTTC+TGG | 0.415376 | 7.4:+92867778 | MS.gene54418:CDS |
GGATGACGCTTGTTTGTTTG+AGG | 0.425038 | 7.4:+92857772 | MS.gene54418:CDS |
TCCGCCTGGTTAGCACTCTT+AGG | 0.425828 | 7.4:-92858028 | None:intergenic |
TGTTGGTTTGGGTGCACCTT+CGG | 0.426153 | 7.4:+92858165 | MS.gene54418:CDS |
GCACACGCGCCGCGACAGCT+AGG | 0.429826 | 7.4:+92856526 | MS.gene54418:CDS |
GATTTAGACATTATTCCTCT+TGG | 0.432142 | 7.4:+92857364 | MS.gene54418:CDS |
GCGACTACAGGGACAACTTT+CGG | 0.432307 | 7.4:+92866991 | MS.gene54418:CDS |
GCCCTAGCAACCCTAATATG+AGG | 0.433466 | 7.4:+92865682 | MS.gene54418:CDS |
TGCATATGAAATGCCTCAGC+TGG | 0.434055 | 7.4:+92857991 | MS.gene54418:CDS |
AAATCATAATGTGGATGTTC+TGG | 0.434349 | 7.4:+92857856 | MS.gene54418:CDS |
AATATCTGCTTCTTTAGATA+AGG | 0.439620 | 7.4:-92858056 | None:intergenic |
GGGAAGGATAGGGTTGTTGA+GGG | 0.440729 | 7.4:+92856993 | MS.gene54418:CDS |
TACAAATTCAGTGTCTTTGA+GGG | 0.441798 | 7.4:+92864148 | MS.gene54418:intron |
CACCAACTTGAACTCTTGGT+TGG | 0.442454 | 7.4:-92864235 | None:intergenic |
GGATGCCGGGAAGGAGGGAG+AGG | 0.443239 | 7.4:+92856959 | MS.gene54418:CDS |
GTGTTTCGAAGGGGAAGGAT+AGG | 0.443772 | 7.4:+92856982 | MS.gene54418:CDS |
GCGATTGAAGAAGGTTATGA+AGG | 0.445772 | 7.4:+92858345 | MS.gene54418:CDS |
AGGAAGGGATTCGAAGTTTG+TGG | 0.447123 | 7.4:+92856705 | MS.gene54418:intron |
ATGAGGTTGAGCGAGGGAGA+GGG | 0.447229 | 7.4:+92856912 | MS.gene54418:CDS |
GGAGAGGGTGTAGGAGTAGC+AGG | 0.448397 | 7.4:+92856927 | MS.gene54418:CDS |
TGTCCACCAACTTGAACTCT+TGG | 0.448736 | 7.4:-92864239 | None:intergenic |
ACCAATATTCCAGCGACTAC+AGG | 0.450659 | 7.4:+92866979 | MS.gene54418:CDS |
TGAATCCCTGATGTTGGTCT+TGG | 0.453418 | 7.4:-92867619 | None:intergenic |
TTGGCACAGGTTTCATTGGA+AGG | 0.456193 | 7.4:+92858121 | MS.gene54418:CDS |
GAGGGAGAGGGTGTTTCGAA+GGG | 0.457499 | 7.4:+92856972 | MS.gene54418:CDS |
ATCTTCGACAGTCTAGGGTT+AGG | 0.466088 | 7.4:+92856374 | MS.gene54418:CDS |
AAATTAAAATCATTGAGGAA+TGG | 0.466418 | 7.4:+92857735 | MS.gene54418:CDS |
ACAAGAAGCTGCCGAGGGAG+GGG | 0.467287 | 7.4:+92856889 | MS.gene54418:CDS |
TCATTGGAAGGGTGTGCGTC+GGG | 0.468547 | 7.4:+92858133 | MS.gene54418:CDS |
GAGGGGATGAGGTTGAGCGA+GGG | 0.469772 | 7.4:+92856906 | MS.gene54418:CDS |
AATGCCTCAGCTGGGTTCTC+CGG | 0.470510 | 7.4:+92858000 | MS.gene54418:CDS |
GGAGGGAGAGGGTGTTTCGA+AGG | 0.474764 | 7.4:+92856971 | MS.gene54418:CDS |
TGTTTCGAAGGGGAAGGATA+GGG | 0.477958 | 7.4:+92856983 | MS.gene54418:CDS |
GAAAGTCCAAGACCAACATC+AGG | 0.479268 | 7.4:+92867613 | MS.gene54418:CDS |
TTGAGCGAGGGAGAGGGTGT+AGG | 0.480472 | 7.4:+92856918 | MS.gene54418:CDS |
TCCCTCATATTAGGGTTGCT+AGG | 0.481348 | 7.4:-92865684 | None:intergenic |
AGCTGCCGAGGGAGGGGATG+AGG | 0.481520 | 7.4:+92856895 | MS.gene54418:CDS |
TTCATTGGAAGGGTGTGCGT+CGG | 0.483111 | 7.4:+92858132 | MS.gene54418:CDS |
TGCTAGGGCTTGGTCCATCA+GGG | 0.485165 | 7.4:-92865668 | None:intergenic |
TAGTCCTAAGAGTGCTAACC+AGG | 0.487085 | 7.4:+92858024 | MS.gene54418:CDS |
GGGGAAGGATAGGGTTGTTG+AGG | 0.488801 | 7.4:+92856992 | MS.gene54418:CDS |
AGCAAGGATGCCGGGAAGGA+GGG | 0.492826 | 7.4:+92856954 | MS.gene54418:CDS |
TTAAAATAGAGAGCAGCAAC+AGG | 0.494414 | 7.4:-92867754 | None:intergenic |
TCTACATCGTCATGTAGCTC+AGG | 0.498033 | 7.4:-92857830 | None:intergenic |
CAGGTGCGAGCAAGGATGCC+GGG | 0.503473 | 7.4:+92856946 | MS.gene54418:CDS |
GAGAAAATGGTTCTGGTGGA+AGG | 0.503564 | 7.4:+92867785 | MS.gene54418:CDS |
TGGCACAGGTTTCATTGGAA+GGG | 0.504194 | 7.4:+92858122 | MS.gene54418:CDS |
TCATGTAGCTCAGGATTATC+GGG | 0.504235 | 7.4:-92857821 | None:intergenic |
ATTAAAATCATTGAGGAATG+GGG | 0.505236 | 7.4:+92857737 | MS.gene54418:CDS |
AAAGTTGTCCCTGTAGTCGC+TGG | 0.509224 | 7.4:-92866988 | None:intergenic |
CTCAACCTCATCCCCTCCCT+CGG | 0.510889 | 7.4:-92856900 | None:intergenic |
GCAGGTGCGAGCAAGGATGC+CGG | 0.511549 | 7.4:+92856945 | MS.gene54418:CDS |
CACACGCGCCGCGACAGCTA+GGG | 0.514657 | 7.4:+92856527 | MS.gene54418:CDS |
GGGAGATGTCTGCTTGGCAC+AGG | 0.515392 | 7.4:+92858108 | MS.gene54418:CDS |
TTAGCACTCTTAGGACTATC+CGG | 0.523048 | 7.4:-92858019 | None:intergenic |
AGGCTCACTATATTAGCTCC+TGG | 0.523146 | 7.4:+92867676 | MS.gene54418:CDS |
AACTTCCTACTTACCAATGC+AGG | 0.524098 | 7.4:-92865710 | None:intergenic |
TATTCCTCTTGGGGCTGACA+AGG | 0.524752 | 7.4:+92857375 | MS.gene54418:CDS |
AAGTTATGTGTTCTTGATTG+TGG | 0.528356 | 7.4:+92857578 | MS.gene54418:intron |
AGAGGGTGTTTCGAAGGGGA+AGG | 0.530138 | 7.4:+92856977 | MS.gene54418:CDS |
AGGAGTAGCAGGTGCGAGCA+AGG | 0.531093 | 7.4:+92856938 | MS.gene54418:CDS |
GACAAGAAGCTGCCGAGGGA+GGG | 0.531439 | 7.4:+92856888 | MS.gene54418:CDS |
ATATGAGGGAATACCTGCAT+TGG | 0.531611 | 7.4:+92865697 | MS.gene54418:CDS |
ACGCGCCGCGACAGCTAGGG+AGG | 0.533204 | 7.4:+92856530 | MS.gene54418:CDS |
TCAAGGGACGAACGTTACTA+CGG | 0.535190 | 7.4:+92856403 | MS.gene54418:CDS |
GATTATGGAAATAATGTGAC+GGG | 0.536089 | 7.4:+92858088 | MS.gene54418:CDS |
CTAGGGTTAGGTATGCATCA+AGG | 0.536848 | 7.4:+92856386 | MS.gene54418:CDS |
AAGTTGGTGGACATGACCTC+AGG | 0.539063 | 7.4:+92864249 | MS.gene54418:CDS |
GGAGGGGATGAGGTTGAGCG+AGG | 0.539109 | 7.4:+92856905 | MS.gene54418:CDS |
GCGTCGGGTTTGATTTATGT+TGG | 0.539546 | 7.4:+92858148 | MS.gene54418:CDS |
GGTTGGTTGACTATCTGAGA+GGG | 0.539901 | 7.4:-92864218 | None:intergenic |
AAGCGGCTTCGGGACATGGA+TGG | 0.540169 | 7.4:+92856346 | None:intergenic |
CAGGTGATGGTGGACCCTGA+TGG | 0.543435 | 7.4:+92865654 | MS.gene54418:intron |
TGCGCGCGGCATTAGTTGAA+GGG | 0.543500 | 7.4:+92856599 | MS.gene54418:CDS |
TTAGAGGTGGTGAATGTGAC+TGG | 0.545365 | 7.4:+92857680 | MS.gene54418:CDS |
CAAAGAGAAAATGGTTCTGG+TGG | 0.545943 | 7.4:+92867781 | MS.gene54418:CDS |
GCTAATATAGTGAGCCTACA+AGG | 0.546035 | 7.4:-92867670 | None:intergenic |
TTTAGACATTATTCCTCTTG+GGG | 0.548712 | 7.4:+92857366 | MS.gene54418:CDS |
TGCTGCCTCCCTAGCTGTCG+CGG | 0.549452 | 7.4:-92856535 | None:intergenic |
AGGGAGAGGGTGTTTCGAAG+GGG | 0.550807 | 7.4:+92856973 | MS.gene54418:CDS |
CAAGGGACGAACGTTACTAC+GGG | 0.551183 | 7.4:+92856404 | MS.gene54418:CDS |
GATGCCGGGAAGGAGGGAGA+GGG | 0.552020 | 7.4:+92856960 | MS.gene54418:CDS |
GAGCAAGGATGCCGGGAAGG+AGG | 0.554916 | 7.4:+92856953 | MS.gene54418:CDS |
TAGATAAGGAAGCATCCGCC+TGG | 0.555320 | 7.4:-92858042 | None:intergenic |
AAGGTCTAGTCCGTGGAGTG+TGG | 0.559093 | 7.4:+92858267 | MS.gene54418:CDS |
ATTAGTTGAAGGGGAAGTTC+CGG | 0.559102 | 7.4:+92856609 | MS.gene54418:CDS |
TGCGAGCAAGGATGCCGGGA+AGG | 0.562553 | 7.4:+92856950 | MS.gene54418:CDS |
CATTTGAATGACGAATTGAC+CGG | 0.565853 | 7.4:-92856628 | None:intergenic |
TAGGGTTAGGTATGCATCAA+GGG | 0.569726 | 7.4:+92856387 | MS.gene54418:CDS |
CAACCAAGAGTTCAAGTTGG+TGG | 0.573770 | 7.4:+92864236 | MS.gene54418:CDS |
GAAAACGTTTGACCCAGATA+AGG | 0.576074 | 7.4:-92857410 | None:intergenic |
TCGGTGTGAGAATATGAACT+TGG | 0.579966 | 7.4:+92857943 | MS.gene54418:CDS |
TGACGCTTGTTTGTTTGAGG+AGG | 0.580732 | 7.4:+92857775 | MS.gene54418:CDS |
TTCGGCTGCAATTGAGCCGA+CGG | 0.582398 | 7.4:+92858183 | MS.gene54418:CDS |
GTGTCCATGCTAAGTTAGCT+CGG | 0.584427 | 7.4:+92856862 | MS.gene54418:CDS |
GAATATGAACTTGGAGACTA+CGG | 0.585276 | 7.4:+92857952 | MS.gene54418:CDS |
CGATTGAAGAAGGTTATGAA+GGG | 0.586458 | 7.4:+92858346 | MS.gene54418:CDS |
GTCGGCTCAATTGCAGCCGA+AGG | 0.587752 | 7.4:-92858181 | None:intergenic |
CCCTAGCAACCCTAATATGA+GGG | 0.588503 | 7.4:+92865683 | MS.gene54418:CDS |
ACACGATGAATCCCTGATGT+TGG | 0.591037 | 7.4:-92867625 | None:intergenic |
CCAATATTCCAGCGACTACA+GGG | 0.594633 | 7.4:+92866980 | MS.gene54418:CDS |
GAAGAAGCTACAGATAATGG+TGG | 0.597292 | 7.4:+92857902 | MS.gene54418:CDS |
GGCATTATGATAACGAGGAT+CGG | 0.597439 | 7.4:+92857924 | MS.gene54418:CDS |
GGAGACTACGGTGCTAGTTG+AGG | 0.598081 | 7.4:+92857964 | MS.gene54418:CDS |
TGACAAGAAGCTGCCGAGGG+AGG | 0.605088 | 7.4:+92856887 | MS.gene54418:CDS |
GCGCGCGGCATTAGTTGAAG+GGG | 0.605776 | 7.4:+92856600 | MS.gene54418:CDS |
TAATGTTCAACATGGTGATG+TGG | 0.609535 | 7.4:+92858300 | MS.gene54418:CDS |
TGGTTGGTTGACTATCTGAG+AGG | 0.609629 | 7.4:-92864219 | None:intergenic |
GCATATGAAATGCCTCAGCT+GGG | 0.610753 | 7.4:+92857992 | MS.gene54418:CDS |
TGTAGAAACAAATCATAATG+TGG | 0.611113 | 7.4:+92857847 | MS.gene54418:CDS |
TGATTATGGAAATAATGTGA+CGG | 0.612707 | 7.4:+92858087 | MS.gene54418:CDS |
TCACTATATTAGCTCCTGGA+TGG | 0.614938 | 7.4:+92867680 | MS.gene54418:CDS |
AAAGTCCAAGACCAACATCA+GGG | 0.617461 | 7.4:+92867614 | MS.gene54418:CDS |
CAAACCGAGCTAACTTAGCA+TGG | 0.617636 | 7.4:-92856866 | None:intergenic |
GCTTATTCAGAATAGAGTGA+AGG | 0.620000 | 7.4:+92857327 | MS.gene54418:intron |
CTAGTCCGTGGAGTGTGGAG+TGG | 0.626107 | 7.4:+92858272 | MS.gene54418:CDS |
TGTAACCACTCCACACTCCA+CGG | 0.627466 | 7.4:-92858277 | None:intergenic |
ATATGCTAATGTTCGTGATG+TGG | 0.629901 | 7.4:+92856794 | MS.gene54418:CDS |
AAGAAGCTACAGATAATGGT+GGG | 0.631214 | 7.4:+92857903 | MS.gene54418:CDS |
CTCTTCCTAGAAATCACCGT+CGG | 0.634598 | 7.4:-92858199 | None:intergenic |
AGCAACATCGTCATTAGAGG+TGG | 0.635431 | 7.4:+92857667 | MS.gene54418:CDS |
CCTCAGGACTCTATACACTC+TGG | 0.640356 | 7.4:+92864265 | MS.gene54418:CDS |
ATTCAGAATAGAGTGAAGGA+TGG | 0.642793 | 7.4:+92857331 | MS.gene54418:intron |
AATGTTCAACATGGTGATGT+GGG | 0.644335 | 7.4:+92858301 | MS.gene54418:CDS |
GGTTTGACAAGAAGCTGCCG+AGG | 0.646486 | 7.4:+92856883 | MS.gene54418:CDS |
GTTTGACAAGAAGCTGCCGA+GGG | 0.648872 | 7.4:+92856884 | MS.gene54418:CDS |
AAAATGGTTCTGGTGGAAGG+AGG | 0.651291 | 7.4:+92867788 | MS.gene54418:CDS |
AAAACCTTGTCAGCCCCAAG+AGG | 0.651743 | 7.4:-92857379 | None:intergenic |
GTTACTACGGGGATTCTGAG+AGG | 0.654712 | 7.4:+92856416 | MS.gene54418:CDS |
TCAAAAGCAGCTTCTGCGCG+CGG | 0.654952 | 7.4:+92856585 | MS.gene54418:CDS |
AACCAACCAAGAGTTCAAGT+TGG | 0.659781 | 7.4:+92864233 | MS.gene54418:CDS |
TGTGACGGGAGATGTCTGCT+TGG | 0.668801 | 7.4:+92858102 | MS.gene54418:CDS |
GGTCTTCAAGGTCTAGTCCG+TGG | 0.672013 | 7.4:+92858260 | MS.gene54418:CDS |
TGGTTACATAATGTTCAACA+TGG | 0.679551 | 7.4:+92858292 | MS.gene54418:CDS |
TCCTAAGAGTGCTAACCAGG+CGG | 0.681301 | 7.4:+92858027 | MS.gene54418:CDS |
CTATCCGGAGAACCCAGCTG+AGG | 0.687986 | 7.4:-92858004 | None:intergenic |
AACAAAGAAGTCAACAACGG+TGG | 0.701619 | 7.4:+92864185 | MS.gene54418:CDS |
AATAACAAAGAAGTCAACAA+CGG | 0.709279 | 7.4:+92864182 | MS.gene54418:CDS |
TGGTGGGCATTATGATAACG+AGG | 0.717183 | 7.4:+92857919 | MS.gene54418:CDS |
CCAGAGTGTATAGAGTCCTG+AGG | 0.732541 | 7.4:-92864265 | None:intergenic |
AAGGGACGAACGTTACTACG+GGG | 0.794667 | 7.4:+92856405 | MS.gene54418:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 92856361 | 92867822 | 92856361 | ID=MS.gene54418 |
chr7.4 | mRNA | 92856361 | 92867822 | 92856361 | ID=MS.gene54418.t1;Parent=MS.gene54418 |
chr7.4 | exon | 92856361 | 92856437 | 92856361 | ID=MS.gene54418.t1.exon1;Parent=MS.gene54418.t1 |
chr7.4 | CDS | 92856361 | 92856437 | 92856361 | ID=cds.MS.gene54418.t1;Parent=MS.gene54418.t1 |
chr7.4 | exon | 92856522 | 92856650 | 92856522 | ID=MS.gene54418.t1.exon2;Parent=MS.gene54418.t1 |
chr7.4 | CDS | 92856522 | 92856650 | 92856522 | ID=cds.MS.gene54418.t1;Parent=MS.gene54418.t1 |
chr7.4 | exon | 92856707 | 92857043 | 92856707 | ID=MS.gene54418.t1.exon3;Parent=MS.gene54418.t1 |
chr7.4 | CDS | 92856707 | 92857043 | 92856707 | ID=cds.MS.gene54418.t1;Parent=MS.gene54418.t1 |
chr7.4 | exon | 92857337 | 92857483 | 92857337 | ID=MS.gene54418.t1.exon4;Parent=MS.gene54418.t1 |
chr7.4 | CDS | 92857337 | 92857483 | 92857337 | ID=cds.MS.gene54418.t1;Parent=MS.gene54418.t1 |
chr7.4 | exon | 92857581 | 92858367 | 92857581 | ID=MS.gene54418.t1.exon5;Parent=MS.gene54418.t1 |
chr7.4 | CDS | 92857581 | 92858367 | 92857581 | ID=cds.MS.gene54418.t1;Parent=MS.gene54418.t1 |
chr7.4 | exon | 92864159 | 92864286 | 92864159 | ID=MS.gene54418.t1.exon6;Parent=MS.gene54418.t1 |
chr7.4 | CDS | 92864159 | 92864286 | 92864159 | ID=cds.MS.gene54418.t1;Parent=MS.gene54418.t1 |
chr7.4 | exon | 92865657 | 92865718 | 92865657 | ID=MS.gene54418.t1.exon7;Parent=MS.gene54418.t1 |
chr7.4 | CDS | 92865657 | 92865718 | 92865657 | ID=cds.MS.gene54418.t1;Parent=MS.gene54418.t1 |
chr7.4 | exon | 92866972 | 92867012 | 92866972 | ID=MS.gene54418.t1.exon8;Parent=MS.gene54418.t1 |
chr7.4 | CDS | 92866972 | 92867012 | 92866972 | ID=cds.MS.gene54418.t1;Parent=MS.gene54418.t1 |
chr7.4 | exon | 92867593 | 92867822 | 92867593 | ID=MS.gene54418.t1.exon9;Parent=MS.gene54418.t1 |
chr7.4 | CDS | 92867593 | 92867822 | 92867593 | ID=cds.MS.gene54418.t1;Parent=MS.gene54418.t1 |
Gene Sequence |
Protein sequence |