Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55422.t1 | XP_024642072.1 | 99.2 | 381 | 3 | 0 | 1 | 381 | 1 | 381 | 2.30E-211 | 744.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55422.t1 | P52425 | 87.0 | 345 | 45 | 0 | 28 | 372 | 22 | 366 | 3.9e-175 | 615.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55422.t1 | A0A396HCX8 | 99.2 | 381 | 3 | 0 | 1 | 381 | 1 | 381 | 1.7e-211 | 744.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene55422 | 0.803782 | 2.96E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene55422 | 0.81135 | 7.32E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene55422 | 0.816645 | 4.97E-52 | -1.69E-46 |
| MS.gene051850 | MS.gene55422 | 0.814373 | 1.59E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene55422 | 0.800601 | 1.33E-48 | -1.69E-46 |
| MS.gene053437 | MS.gene55422 | 0.812303 | 4.54E-51 | -1.69E-46 |
| MS.gene056584 | MS.gene55422 | 0.80321 | 3.89E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene55422 | 0.817049 | 4.03E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene55422 | 0.812234 | 4.70E-51 | -1.69E-46 |
| MS.gene059171 | MS.gene55422 | 0.803644 | 3.16E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55422.t1 | MTR_6g021915 | 99.080 | 326 | 3 | 0 | 1 | 326 | 1 | 326 | 0.0 | 663 |
| MS.gene55422.t1 | MTR_7g032630 | 83.430 | 344 | 57 | 0 | 29 | 372 | 2 | 345 | 0.0 | 613 |
| MS.gene55422.t1 | MTR_6g021910 | 100.000 | 55 | 0 | 0 | 327 | 381 | 352 | 406 | 1.55e-29 | 118 |
| MS.gene55422.t1 | MTR_5g067640 | 29.060 | 351 | 221 | 11 | 24 | 368 | 115 | 443 | 3.89e-27 | 112 |
| MS.gene55422.t1 | MTR_7g090970 | 26.841 | 421 | 218 | 18 | 10 | 356 | 9 | 413 | 1.38e-15 | 78.2 |
| MS.gene55422.t1 | MTR_7g090970 | 26.841 | 421 | 218 | 18 | 10 | 356 | 9 | 413 | 1.58e-15 | 78.2 |
| MS.gene55422.t1 | MTR_4g043650 | 26.098 | 410 | 210 | 19 | 17 | 356 | 27 | 413 | 3.37e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55422.t1 | AT5G40610 | 79.784 | 371 | 67 | 2 | 1 | 371 | 35 | 397 | 0.0 | 612 |
| MS.gene55422.t1 | AT2G40690 | 29.915 | 351 | 218 | 11 | 24 | 368 | 82 | 410 | 3.63e-28 | 114 |
| MS.gene55422.t1 | AT2G40690 | 29.915 | 351 | 218 | 11 | 24 | 368 | 82 | 410 | 3.63e-28 | 114 |
| MS.gene55422.t1 | AT2G40690 | 30.952 | 294 | 187 | 8 | 80 | 368 | 27 | 309 | 1.14e-26 | 108 |
Find 86 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATCCAAGGTTACTGTTAT+TGG | 0.229642 | 6.2:-15368040 | MS.gene55422:CDS |
| CTGTTATTGGTAGTGGTAAT+TGG | 0.243155 | 6.2:-15368027 | MS.gene55422:CDS |
| GAGGCTATTTCCCTTGTTAA+AGG | 0.247864 | 6.2:-15366111 | MS.gene55422:CDS |
| TGCAAATTCCTTCCATGAAT+TGG | 0.280999 | 6.2:+15366166 | None:intergenic |
| TGTTATTGGTAGTGGTAATT+GGG | 0.299334 | 6.2:-15368026 | MS.gene55422:CDS |
| TAAAGGTATGGAAGTCAAAA+TGG | 0.303121 | 6.2:-15366094 | MS.gene55422:CDS |
| ACAGCTGTCACGATGAAATA+AGG | 0.357222 | 6.2:+15365140 | None:intergenic |
| TGTGACACCACACCAATTCA+TGG | 0.360217 | 6.2:-15366178 | MS.gene55422:CDS |
| GTTATTGTTTCCATCTGTTA+AGG | 0.366768 | 6.2:-15364180 | MS.gene55422:CDS |
| CTTCTCACTGTATTCAACTA+TGG | 0.385736 | 6.2:+15361066 | None:intergenic |
| TACCAAGTCCTTCTAATTCA+AGG | 0.406445 | 6.2:-15361042 | MS.gene55422:CDS |
| AGCTAACACCTTGAATTAGA+AGG | 0.415862 | 6.2:+15361034 | None:intergenic |
| TTGCAGTGGGTGGAAGAAAC+AGG | 0.423805 | 6.2:-15363792 | MS.gene55422:intron |
| GAGACACAGTTTCTCCTCCT+TGG | 0.430784 | 6.2:+15368101 | None:intergenic |
| AGTAAGGATGTGGGTATATG+AGG | 0.430869 | 6.2:-15366936 | MS.gene55422:CDS |
| TTCTATCATGGCTCCAGCAT+TGG | 0.430891 | 6.2:-15368128 | None:intergenic |
| CCTCCTTGGACTTCCAATGC+TGG | 0.432042 | 6.2:+15368115 | None:intergenic |
| CCCATCTCTCTGCAGCTTCG+CGG | 0.436460 | 6.2:+15365180 | None:intergenic |
| AATCAATTGTTCTGTGTTGA+TGG | 0.438569 | 6.2:-15366028 | MS.gene55422:CDS |
| TCTTACAGCATGTTGTGATA+AGG | 0.449347 | 6.2:+15364123 | None:intergenic |
| GTGAAGCAACTGTTGGATAC+AGG | 0.456313 | 6.2:-15365208 | MS.gene55422:CDS |
| TGATAACTTCAGATGAAGTA+AGG | 0.460202 | 6.2:-15366952 | MS.gene55422:intron |
| AAGGTTACTGTTATTGGTAG+TGG | 0.460479 | 6.2:-15368034 | MS.gene55422:CDS |
| GGAATTTGCAAAAGGATAGC+TGG | 0.462605 | 6.2:-15366153 | MS.gene55422:CDS |
| CACCTTGAATTAGAAGGACT+TGG | 0.469109 | 6.2:+15361040 | None:intergenic |
| AATTAGGTTCAAGATGTTGA+AGG | 0.475009 | 6.2:-15364505 | MS.gene55422:intron |
| AACGTTGTGGCCATAGCAGC+AGG | 0.479042 | 6.2:-15364457 | MS.gene55422:intron |
| AAAGGATAGCTGGAAAGATA+AGG | 0.492907 | 6.2:-15366143 | MS.gene55422:CDS |
| ACCGCGAAGCTGCAGAGAGA+TGG | 0.494872 | 6.2:-15365181 | MS.gene55422:CDS |
| GTGCAACGAACCTGCTGCTA+TGG | 0.497640 | 6.2:+15364447 | None:intergenic |
| TCATGGAAGGAATTTGCAAA+AGG | 0.499023 | 6.2:-15366161 | MS.gene55422:CDS |
| ATGAAAATTGTTCATCCTGA+TGG | 0.507350 | 6.2:+15367970 | None:intergenic |
| TTATTGCTTCTAATACCATC+AGG | 0.510820 | 6.2:-15367985 | MS.gene55422:CDS |
| TACCTCCCTGGAATCAAGCT+TGG | 0.511234 | 6.2:-15366443 | MS.gene55422:CDS |
| TTTGTCGATGGCTTGGAGAT+GGG | 0.511520 | 6.2:-15364349 | MS.gene55422:CDS |
| CCGCGAAGCTGCAGAGAGAT+GGG | 0.513974 | 6.2:-15365180 | MS.gene55422:CDS |
| AACTGCAAGGGAAGTATATG+AGG | 0.517556 | 6.2:-15361173 | MS.gene55422:CDS |
| CTTCAGATGAAGTAAGGATG+TGG | 0.519403 | 6.2:-15366946 | MS.gene55422:intron |
| TATTTCCCTTGTTAAAGGTA+TGG | 0.523980 | 6.2:-15366106 | MS.gene55422:CDS |
| ACTTGGTCTTAGAGAAATGA+AGG | 0.528232 | 6.2:-15364213 | MS.gene55422:CDS |
| ATGCAAAGAACGGAGGAAAG+AGG | 0.539684 | 6.2:-15363753 | MS.gene55422:intron |
| ACTCTCATTTCTGAAGAACT+AGG | 0.540712 | 6.2:-15366051 | MS.gene55422:CDS |
| AAGGATAGCTGGAAAGATAA+GGG | 0.542796 | 6.2:-15366142 | MS.gene55422:CDS |
| GACTTCCATACCTTTAACAA+GGG | 0.545038 | 6.2:+15366101 | None:intergenic |
| ACTACCAATAACAGTAACCT+TGG | 0.546645 | 6.2:+15368036 | None:intergenic |
| CTTGAAGCTGAGATGCTACA+AGG | 0.547508 | 6.2:-15363614 | MS.gene55422:CDS |
| AAGGTACTGTCCTTAACAGA+TGG | 0.549958 | 6.2:+15364170 | None:intergenic |
| GTTATTGGTAGTGGTAATTG+GGG | 0.556106 | 6.2:-15368025 | MS.gene55422:CDS |
| AAGTTCAGTGAAGCAACTGT+TGG | 0.557825 | 6.2:-15365215 | MS.gene55422:CDS |
| GGGAGCAAACATCGCAAATG+AGG | 0.571317 | 6.2:-15366007 | MS.gene55422:intron |
| CATGTACTGTTGAGAAGAGA+GGG | 0.572577 | 6.2:+15361119 | None:intergenic |
| CAACTATGGCTGATGGTGGA+AGG | 0.573863 | 6.2:+15361080 | None:intergenic |
| GAAAATGTAAAATACCTCCC+TGG | 0.574684 | 6.2:-15366455 | MS.gene55422:CDS |
| ATCAATTGTTCTGTGTTGAT+GGG | 0.586259 | 6.2:-15366027 | MS.gene55422:CDS |
| ATTAGGGTGTCTCAACTGCA+AGG | 0.587502 | 6.2:-15361186 | MS.gene55422:intron |
| TGACTTCCATACCTTTAACA+AGG | 0.588587 | 6.2:+15366100 | None:intergenic |
| TCATGTACTGTTGAGAAGAG+AGG | 0.589899 | 6.2:+15361118 | None:intergenic |
| ATGAGAGTAGAGATCATGCA+AGG | 0.591091 | 6.2:+15366066 | None:intergenic |
| TGATGTTACAAACAGATCCA+AGG | 0.592961 | 6.2:-15368053 | MS.gene55422:CDS |
| TTCAGATGAAGTAAGGATGT+GGG | 0.597364 | 6.2:-15366945 | MS.gene55422:intron |
| CTGTATTCAACTATGGCTGA+TGG | 0.616112 | 6.2:+15361073 | None:intergenic |
| TTTAACAAGGGAAATAGCCT+CGG | 0.618873 | 6.2:+15366113 | None:intergenic |
| AAAGATAAGGGCTGATGCCG+AGG | 0.623271 | 6.2:-15366130 | MS.gene55422:CDS |
| GCTCCAGCATTGGAAGTCCA+AGG | 0.625699 | 6.2:-15368118 | MS.gene55422:CDS |
| GGTATGGAAGTCAAAATGGA+AGG | 0.626292 | 6.2:-15366090 | MS.gene55422:CDS |
| GAAACTGTGTCTCAAAACAA+TGG | 0.626309 | 6.2:-15368091 | MS.gene55422:CDS |
| GCTGAAGCTTATGCAAAGAA+CGG | 0.626463 | 6.2:-15363763 | MS.gene55422:CDS |
| TCTGTGAGCTTCTCTCCACT+TGG | 0.628160 | 6.2:+15366905 | None:intergenic |
| TAGGCTGCAATCATGAGACT+TGG | 0.633310 | 6.2:-15364230 | MS.gene55422:CDS |
| ACACCACACCAATTCATGGA+AGG | 0.636120 | 6.2:-15366174 | MS.gene55422:CDS |
| GATCCCGACTTAGAAAATGC+AGG | 0.637019 | 6.2:-15366404 | MS.gene55422:intron |
| TATGAGGTACTGAGCCATCG+TGG | 0.642714 | 6.2:-15361157 | MS.gene55422:CDS |
| GTTGAAGGAGTTGAATTATG+CGG | 0.642748 | 6.2:-15364490 | MS.gene55422:CDS |
| AGGTACTGAGCCATCGTGGG+TGG | 0.645187 | 6.2:-15361153 | MS.gene55422:CDS |
| TTAGGGTGTCTCAACTGCAA+GGG | 0.650473 | 6.2:-15361185 | MS.gene55422:intron |
| ATGAGGTACTGAGCCATCGT+GGG | 0.651943 | 6.2:-15361156 | MS.gene55422:CDS |
| ATTCCTTCCATGAATTGGTG+TGG | 0.654807 | 6.2:+15366171 | None:intergenic |
| TATTCAACTATGGCTGATGG+TGG | 0.662646 | 6.2:+15361076 | None:intergenic |
| CGGAACTCTAAAGAACGTTG+TGG | 0.675918 | 6.2:-15364470 | MS.gene55422:CDS |
| ACAGTACATGAGATAAGCAG+TGG | 0.683613 | 6.2:-15361106 | MS.gene55422:CDS |
| TGCCAAGCTTGATTCCAGGG+AGG | 0.689684 | 6.2:+15366441 | None:intergenic |
| GAAGCTTATGCAAAGAACGG+AGG | 0.691181 | 6.2:-15363760 | MS.gene55422:CDS |
| TGAGAGTAGAGATCATGCAA+GGG | 0.698947 | 6.2:+15366067 | None:intergenic |
| ACAACTCTAGCCACCCACGA+TGG | 0.711454 | 6.2:+15361143 | None:intergenic |
| TATGAGGAGACATTACCAAG+TGG | 0.730978 | 6.2:-15366920 | MS.gene55422:CDS |
| CCAGCATTGGAAGTCCAAGG+AGG | 0.735860 | 6.2:-15368115 | MS.gene55422:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 15361036 | 15368143 | 15361036 | ID=MS.gene55422 |
| chr6.2 | mRNA | 15361036 | 15368143 | 15361036 | ID=MS.gene55422.t1;Parent=MS.gene55422 |
| chr6.2 | exon | 15367969 | 15368143 | 15367969 | ID=MS.gene55422.t1.exon1;Parent=MS.gene55422.t1 |
| chr6.2 | CDS | 15367969 | 15368143 | 15367969 | ID=cds.MS.gene55422.t1;Parent=MS.gene55422.t1 |
| chr6.2 | exon | 15366886 | 15366962 | 15366886 | ID=MS.gene55422.t1.exon2;Parent=MS.gene55422.t1 |
| chr6.2 | CDS | 15366886 | 15366962 | 15366886 | ID=cds.MS.gene55422.t1;Parent=MS.gene55422.t1 |
| chr6.2 | exon | 15366405 | 15366477 | 15366405 | ID=MS.gene55422.t1.exon3;Parent=MS.gene55422.t1 |
| chr6.2 | CDS | 15366405 | 15366477 | 15366405 | ID=cds.MS.gene55422.t1;Parent=MS.gene55422.t1 |
| chr6.2 | exon | 15366008 | 15366225 | 15366008 | ID=MS.gene55422.t1.exon4;Parent=MS.gene55422.t1 |
| chr6.2 | CDS | 15366008 | 15366225 | 15366008 | ID=cds.MS.gene55422.t1;Parent=MS.gene55422.t1 |
| chr6.2 | exon | 15365142 | 15365249 | 15365142 | ID=MS.gene55422.t1.exon5;Parent=MS.gene55422.t1 |
| chr6.2 | CDS | 15365142 | 15365249 | 15365142 | ID=cds.MS.gene55422.t1;Parent=MS.gene55422.t1 |
| chr6.2 | exon | 15364458 | 15364521 | 15364458 | ID=MS.gene55422.t1.exon6;Parent=MS.gene55422.t1 |
| chr6.2 | CDS | 15364458 | 15364521 | 15364458 | ID=cds.MS.gene55422.t1;Parent=MS.gene55422.t1 |
| chr6.2 | exon | 15364336 | 15364373 | 15364336 | ID=MS.gene55422.t1.exon7;Parent=MS.gene55422.t1 |
| chr6.2 | CDS | 15364336 | 15364373 | 15364336 | ID=cds.MS.gene55422.t1;Parent=MS.gene55422.t1 |
| chr6.2 | exon | 15364129 | 15364249 | 15364129 | ID=MS.gene55422.t1.exon8;Parent=MS.gene55422.t1 |
| chr6.2 | CDS | 15364129 | 15364249 | 15364129 | ID=cds.MS.gene55422.t1;Parent=MS.gene55422.t1 |
| chr6.2 | exon | 15363754 | 15363808 | 15363754 | ID=MS.gene55422.t1.exon9;Parent=MS.gene55422.t1 |
| chr6.2 | CDS | 15363754 | 15363808 | 15363754 | ID=cds.MS.gene55422.t1;Parent=MS.gene55422.t1 |
| chr6.2 | exon | 15363601 | 15363649 | 15363601 | ID=MS.gene55422.t1.exon10;Parent=MS.gene55422.t1 |
| chr6.2 | CDS | 15363601 | 15363649 | 15363601 | ID=cds.MS.gene55422.t1;Parent=MS.gene55422.t1 |
| chr6.2 | exon | 15361036 | 15361203 | 15361036 | ID=MS.gene55422.t1.exon11;Parent=MS.gene55422.t1 |
| chr6.2 | CDS | 15361036 | 15361203 | 15361036 | ID=cds.MS.gene55422.t1;Parent=MS.gene55422.t1 |
| Gene Sequence |
| Protein sequence |