Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55726.t1 | XP_013447087.1 | 93.7 | 431 | 11 | 2 | 1 | 431 | 1 | 415 | 4.10E-180 | 641 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55726.t1 | Q38897 | 52.0 | 333 | 107 | 4 | 152 | 431 | 105 | 437 | 1.6e-68 | 261.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55726.t1 | A0A072TUA6 | 93.7 | 431 | 11 | 2 | 1 | 431 | 1 | 415 | 2.9e-180 | 641.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene55726 | 0.808405 | 3.15E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene55726 | 0.844905 | 5.66E-59 | -1.69E-46 |
| MS.gene052346 | MS.gene55726 | 0.820143 | 8.01E-53 | -1.69E-46 |
| MS.gene056166 | MS.gene55726 | 0.818498 | 1.90E-52 | -1.69E-46 |
| MS.gene057734 | MS.gene55726 | 0.808576 | 2.89E-50 | -1.69E-46 |
| MS.gene058157 | MS.gene55726 | 0.805618 | 1.22E-49 | -1.69E-46 |
| MS.gene05995 | MS.gene55726 | 0.975534 | 3.96E-140 | -1.69E-46 |
| MS.gene05996 | MS.gene55726 | 0.901775 | 1.90E-78 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55726.t1 | MTR_8g098815 | 94.907 | 432 | 6 | 3 | 1 | 432 | 1 | 416 | 0.0 | 839 |
| MS.gene55726.t1 | MTR_5g018860 | 55.118 | 254 | 96 | 3 | 190 | 432 | 325 | 571 | 2.18e-83 | 271 |
| MS.gene55726.t1 | MTR_8g078480 | 54.074 | 270 | 98 | 4 | 189 | 432 | 354 | 623 | 1.64e-80 | 265 |
| MS.gene55726.t1 | MTR_1g057790 | 47.177 | 248 | 102 | 3 | 201 | 433 | 161 | 394 | 9.13e-65 | 219 |
| MS.gene55726.t1 | MTR_1g023050 | 48.374 | 246 | 97 | 5 | 204 | 433 | 173 | 404 | 1.30e-64 | 219 |
| MS.gene55726.t1 | MTR_3g112300 | 43.580 | 257 | 106 | 6 | 194 | 432 | 157 | 392 | 1.05e-60 | 202 |
| MS.gene55726.t1 | MTR_3g112300 | 43.411 | 258 | 107 | 6 | 194 | 433 | 157 | 393 | 1.30e-59 | 203 |
| MS.gene55726.t1 | MTR_3g112300 | 43.411 | 258 | 107 | 6 | 194 | 433 | 157 | 393 | 2.33e-59 | 204 |
| MS.gene55726.t1 | MTR_7g106320 | 46.254 | 307 | 141 | 7 | 138 | 433 | 113 | 406 | 4.61e-59 | 204 |
| MS.gene55726.t1 | MTR_4g051532 | 49.356 | 233 | 111 | 3 | 205 | 433 | 221 | 450 | 4.08e-56 | 197 |
| MS.gene55726.t1 | MTR_3g112300 | 41.949 | 236 | 98 | 6 | 194 | 411 | 157 | 371 | 1.60e-50 | 175 |
| MS.gene55726.t1 | MTR_4g019450 | 42.276 | 246 | 94 | 6 | 201 | 432 | 196 | 407 | 8.82e-48 | 172 |
| MS.gene55726.t1 | MTR_7g065050 | 42.308 | 234 | 117 | 5 | 201 | 433 | 137 | 353 | 3.15e-47 | 170 |
| MS.gene55726.t1 | MTR_3g112290 | 40.496 | 242 | 123 | 7 | 201 | 432 | 165 | 395 | 1.92e-44 | 160 |
| MS.gene55726.t1 | MTR_2g095050 | 41.393 | 244 | 126 | 5 | 201 | 432 | 248 | 486 | 2.18e-44 | 164 |
| MS.gene55726.t1 | MTR_1g016490 | 36.810 | 163 | 94 | 4 | 270 | 432 | 318 | 471 | 3.14e-26 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55726.t1 | AT5G41410 | 45.209 | 407 | 143 | 11 | 100 | 432 | 38 | 438 | 7.71e-88 | 279 |
| MS.gene55726.t1 | AT4G36870 | 55.230 | 239 | 95 | 3 | 201 | 432 | 312 | 545 | 3.04e-80 | 258 |
| MS.gene55726.t1 | AT4G36870 | 55.462 | 238 | 94 | 3 | 201 | 431 | 312 | 544 | 6.21e-80 | 258 |
| MS.gene55726.t1 | AT2G23760 | 53.782 | 238 | 107 | 1 | 198 | 432 | 234 | 471 | 4.16e-79 | 257 |
| MS.gene55726.t1 | AT2G23760 | 53.782 | 238 | 107 | 1 | 198 | 432 | 234 | 471 | 4.16e-79 | 257 |
| MS.gene55726.t1 | AT2G23760 | 53.782 | 238 | 107 | 1 | 198 | 432 | 234 | 471 | 4.16e-79 | 257 |
| MS.gene55726.t1 | AT4G36870 | 55.230 | 239 | 95 | 3 | 201 | 432 | 312 | 545 | 1.90e-78 | 258 |
| MS.gene55726.t1 | AT4G36870 | 55.230 | 239 | 95 | 3 | 201 | 432 | 312 | 545 | 1.90e-78 | 258 |
| MS.gene55726.t1 | AT2G23760 | 44.138 | 290 | 107 | 2 | 198 | 432 | 234 | 523 | 7.69e-69 | 231 |
| MS.gene55726.t1 | AT4G34610 | 46.595 | 279 | 132 | 3 | 162 | 433 | 94 | 362 | 1.23e-65 | 219 |
| MS.gene55726.t1 | AT4G34610 | 46.595 | 279 | 132 | 3 | 162 | 433 | 94 | 362 | 1.23e-65 | 219 |
| MS.gene55726.t1 | AT4G34610 | 46.595 | 279 | 132 | 3 | 162 | 433 | 94 | 362 | 1.23e-65 | 219 |
| MS.gene55726.t1 | AT4G34610 | 46.595 | 279 | 132 | 3 | 162 | 433 | 94 | 362 | 1.23e-65 | 219 |
| MS.gene55726.t1 | AT1G19700 | 49.569 | 232 | 113 | 3 | 205 | 433 | 169 | 399 | 4.42e-64 | 215 |
| MS.gene55726.t1 | AT1G19700 | 49.569 | 232 | 113 | 3 | 205 | 433 | 169 | 399 | 4.42e-64 | 215 |
| MS.gene55726.t1 | AT1G19700 | 49.569 | 232 | 113 | 3 | 205 | 433 | 169 | 399 | 4.42e-64 | 215 |
| MS.gene55726.t1 | AT1G19700 | 49.569 | 232 | 113 | 3 | 205 | 433 | 169 | 399 | 4.42e-64 | 215 |
| MS.gene55726.t1 | AT1G19700 | 49.569 | 232 | 113 | 3 | 205 | 433 | 169 | 399 | 4.42e-64 | 215 |
| MS.gene55726.t1 | AT1G75410 | 49.573 | 234 | 103 | 5 | 205 | 433 | 171 | 394 | 5.29e-64 | 211 |
| MS.gene55726.t1 | AT2G16400 | 49.785 | 233 | 102 | 4 | 202 | 433 | 115 | 333 | 3.26e-63 | 211 |
| MS.gene55726.t1 | AT1G75410 | 49.351 | 231 | 108 | 4 | 205 | 433 | 171 | 394 | 4.61e-63 | 212 |
| MS.gene55726.t1 | AT1G75410 | 49.351 | 231 | 108 | 4 | 205 | 433 | 171 | 394 | 4.61e-63 | 212 |
| MS.gene55726.t1 | AT2G35940 | 49.402 | 251 | 99 | 6 | 202 | 432 | 190 | 432 | 1.18e-62 | 214 |
| MS.gene55726.t1 | AT2G35940 | 49.402 | 251 | 99 | 6 | 202 | 432 | 190 | 432 | 1.18e-62 | 214 |
| MS.gene55726.t1 | AT2G35940 | 49.402 | 251 | 99 | 6 | 202 | 432 | 190 | 432 | 1.18e-62 | 214 |
| MS.gene55726.t1 | AT1G75430 | 42.781 | 187 | 97 | 3 | 255 | 432 | 64 | 249 | 3.43e-45 | 159 |
| MS.gene55726.t1 | AT2G27220 | 38.496 | 226 | 107 | 4 | 207 | 432 | 82 | 275 | 6.66e-43 | 156 |
| MS.gene55726.t1 | AT2G27220 | 38.496 | 226 | 107 | 4 | 207 | 432 | 82 | 275 | 6.66e-43 | 156 |
| MS.gene55726.t1 | AT5G02030 | 40.664 | 241 | 119 | 5 | 201 | 432 | 170 | 395 | 1.50e-41 | 155 |
| MS.gene55726.t1 | AT2G27990 | 38.489 | 278 | 136 | 7 | 162 | 432 | 222 | 471 | 2.74e-41 | 154 |
| MS.gene55726.t1 | AT2G27220 | 35.656 | 244 | 107 | 5 | 207 | 432 | 82 | 293 | 4.87e-39 | 146 |
| MS.gene55726.t1 | AT1G75430 | 41.566 | 166 | 87 | 3 | 255 | 411 | 64 | 228 | 1.05e-35 | 133 |
| MS.gene55726.t1 | AT2G27990 | 36.187 | 257 | 129 | 7 | 162 | 411 | 222 | 450 | 1.41e-31 | 125 |
| MS.gene55726.t1 | AT4G32980 | 31.897 | 232 | 145 | 4 | 201 | 432 | 201 | 419 | 1.22e-26 | 112 |
| MS.gene55726.t1 | AT4G32980 | 31.897 | 232 | 145 | 4 | 201 | 432 | 201 | 419 | 1.22e-26 | 112 |
Find 69 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACGTTGATAAGCATATTT+TGG | 0.179512 | 4.3:-5543603 | MS.gene55726:CDS |
| AACGTTCTGTTTCAATTCTC+AGG | 0.263185 | 4.3:-5544219 | MS.gene55726:CDS |
| CTGTTTCAATTCTCAGGGCT+TGG | 0.264891 | 4.3:-5544213 | MS.gene55726:CDS |
| GTTTCACCCTTTGTTGTTCC+AGG | 0.285076 | 4.3:+5544346 | None:intergenic |
| TCAGCAAACCCTTCCTCTAT+TGG | 0.320628 | 4.3:-5545264 | MS.gene55726:CDS |
| TTTGTTGTTCCAGGTGCAAC+AGG | 0.331439 | 4.3:+5544355 | None:intergenic |
| TGCGAAAGTTTATTCAGCTT+TGG | 0.371886 | 4.3:-5544470 | MS.gene55726:CDS |
| TTTGAAGCTGTAGCTGGAAA+TGG | 0.404194 | 4.3:-5544496 | MS.gene55726:CDS |
| ATAATATTTAGGTTGATAGA+AGG | 0.409270 | 4.3:-5544561 | MS.gene55726:intron |
| AGTTCAACAATAAGCAAAGT+TGG | 0.410232 | 4.3:-5545059 | MS.gene55726:CDS |
| AAGATGTTGTTGATGTTGTT+TGG | 0.412598 | 4.3:+5545626 | None:intergenic |
| TGAAATCTTGATGTTGTTGT+TGG | 0.430842 | 4.3:+5545469 | None:intergenic |
| GTAGTGAGATTAAACATCTC+TGG | 0.433803 | 4.3:+5545672 | None:intergenic |
| GGCTTCTTGAGAGACCGGTT+TGG | 0.434607 | 4.3:+5543576 | None:intergenic |
| TGGATTTGTGTTTGAATCGT+TGG | 0.441048 | 4.3:+5545711 | None:intergenic |
| ATATGCTTATCAACGTCGCT+TGG | 0.454930 | 4.3:+5543608 | None:intergenic |
| AATCATCATTTACAAGATCA+AGG | 0.456108 | 4.3:-5545210 | MS.gene55726:CDS |
| TCATCATTTGAAGCTGTAGC+TGG | 0.459401 | 4.3:-5544502 | MS.gene55726:CDS |
| GAGATGTTTAATCTCACTAC+AGG | 0.460320 | 4.3:-5545669 | MS.gene55726:CDS |
| TTCTTGAGAGACCGGTTTGG+CGG | 0.471377 | 4.3:+5543579 | None:intergenic |
| ATGTGGAAAACAAATTTCTC+AGG | 0.472948 | 4.3:-5545561 | MS.gene55726:CDS |
| GTTCAACAATAAGCAAAGTT+GGG | 0.473195 | 4.3:-5545058 | MS.gene55726:CDS |
| TCTTGAGAGACCGGTTTGGC+GGG | 0.473357 | 4.3:+5543580 | None:intergenic |
| TGCCTGGCTTCTTGAGAGAC+CGG | 0.474444 | 4.3:+5543571 | None:intergenic |
| TATGCTTATCAACGTCGCTT+GGG | 0.485472 | 4.3:+5543609 | None:intergenic |
| AGAATTGAAACAGAACGTTC+AGG | 0.492761 | 4.3:+5544223 | None:intergenic |
| AAAAGATTGTAAACCAATAG+AGG | 0.498080 | 4.3:+5545251 | None:intergenic |
| ACTACAGGGATGGAGATGAT+AGG | 0.502219 | 4.3:-5545654 | MS.gene55726:CDS |
| TCATTGAGAAGTTCTTGTGC+TGG | 0.509475 | 4.3:+5545144 | None:intergenic |
| CTGGATCCGACACAAAGCCT+TGG | 0.517070 | 4.3:+5545691 | None:intergenic |
| ACGTTCTGTTTCAATTCTCA+GGG | 0.517994 | 4.3:-5544218 | MS.gene55726:CDS |
| TTACAAGATCAAGGGTATCA+AGG | 0.518553 | 4.3:-5545201 | MS.gene55726:CDS |
| TCAAACAACAAGAAAAGCAA+TGG | 0.524152 | 4.3:-5544389 | MS.gene55726:CDS |
| ACATGATGGAAACACATCCT+TGG | 0.528940 | 4.3:-5544264 | MS.gene55726:CDS |
| ATAATATACCTCTTCTAGCA+TGG | 0.533662 | 4.3:+5544936 | None:intergenic |
| AACCGGTCTCTCAAGAAGCC+AGG | 0.535546 | 4.3:-5543573 | MS.gene55726:CDS |
| GTTGCACCTGGAACAACAAA+GGG | 0.538924 | 4.3:-5544352 | MS.gene55726:CDS |
| CAAACAACAAGAAAAGCAAT+GGG | 0.541294 | 4.3:-5544388 | MS.gene55726:CDS |
| GATTGTAAACCAATAGAGGA+AGG | 0.551563 | 4.3:+5545255 | None:intergenic |
| AGCACTATTGTAATCAAATG+AGG | 0.555931 | 4.3:-5544534 | MS.gene55726:CDS |
| GGTCTTTCATTACCTTCACA+AGG | 0.569310 | 4.3:+5545315 | None:intergenic |
| ATTTCAACAAATCAACATGA+TGG | 0.573334 | 4.3:-5544278 | MS.gene55726:CDS |
| TGTTGCACCTGGAACAACAA+AGG | 0.574394 | 4.3:-5544353 | MS.gene55726:CDS |
| GTTTAATCTCACTACAGGGA+TGG | 0.583583 | 4.3:-5545664 | MS.gene55726:CDS |
| GAAGATGACAAAACATCAAG+TGG | 0.589082 | 4.3:-5545750 | MS.gene55726:CDS |
| GCTCCTTTCCATGCTAGAAG+AGG | 0.590546 | 4.3:-5544944 | MS.gene55726:intron |
| AAACTAAGTCAACAACATGT+TGG | 0.592199 | 4.3:-5545537 | MS.gene55726:CDS |
| ATCATCATTTACAAGATCAA+GGG | 0.598993 | 4.3:-5545209 | MS.gene55726:CDS |
| ATTGTAAACCAATAGAGGAA+GGG | 0.599402 | 4.3:+5545256 | None:intergenic |
| ATACCTCTTCTAGCATGGAA+AGG | 0.599613 | 4.3:+5544941 | None:intergenic |
| TTGTTGTTCCAGGTGCAACA+GGG | 0.600884 | 4.3:+5544356 | None:intergenic |
| GAGAGTGAAAGTCCTTGACT+TGG | 0.606569 | 4.3:+5545294 | None:intergenic |
| ATTCATCATCTTCACATCAG+TGG | 0.610423 | 4.3:-5545374 | MS.gene55726:CDS |
| GTCTTTCATTACCTTCACAA+GGG | 0.619695 | 4.3:+5545316 | None:intergenic |
| ACACAACAAACTCTGTCATG+TGG | 0.622405 | 4.3:-5545578 | MS.gene55726:CDS |
| AGACCACGTTGAGGTCTCCA+AGG | 0.624695 | 4.3:+5544247 | None:intergenic |
| CAACAAAGGGTGAAACACCT+AGG | 0.627180 | 4.3:-5544339 | MS.gene55726:CDS |
| GATGACAAAACATCAAGTGG+TGG | 0.632307 | 4.3:-5545747 | MS.gene55726:CDS |
| ACGATTCAAACACAAATCCA+AGG | 0.635087 | 4.3:-5545708 | MS.gene55726:CDS |
| TTGTAATCAAATGAGGAGTG+TGG | 0.639918 | 4.3:-5544527 | MS.gene55726:CDS |
| TGGGAAGATGATAACAACAA+TGG | 0.648007 | 4.3:-5545039 | MS.gene55726:CDS |
| GGTAATGAAAGACCAAGTCA+AGG | 0.652296 | 4.3:-5545306 | MS.gene55726:CDS |
| ACAAATCCAAGGCTTTGTGT+CGG | 0.652705 | 4.3:-5545697 | MS.gene55726:CDS |
| GAAGATGATAACAACAATGG+TGG | 0.654808 | 4.3:-5545036 | MS.gene55726:CDS |
| TGATCAGAATCTAAACAACA+TGG | 0.698586 | 4.3:-5545424 | MS.gene55726:CDS |
| AGATGTTTAATCTCACTACA+GGG | 0.700473 | 4.3:-5545668 | MS.gene55726:CDS |
| CAATTCAACAAACTCTACAG+AGG | 0.717090 | 4.3:+5544984 | None:intergenic |
| CATCCTTGGAGACCTCAACG+TGG | 0.740668 | 4.3:-5544250 | MS.gene55726:CDS |
| CGTTCAGGAAGACCACGTTG+AGG | 0.743992 | 4.3:+5544238 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTGTATAATAATATTT+AGG | - | chr4.3:5544764-5544783 | MS.gene55726:intron | 10.0% |
| !! | ATGAAGAAAAAAAAGAATTA+CGG | + | chr4.3:5545170-5545189 | None:intergenic | 15.0% |
| !! | CAAAAAATAAAAACAACTAT+TGG | - | chr4.3:5545306-5545325 | MS.gene55726:CDS | 15.0% |
| !! | TTATGACTTGAAATAAATTA+AGG | + | chr4.3:5544498-5544517 | None:intergenic | 15.0% |
| !!! | GTTGTTTTTATTTTTTGAAA+TGG | + | chr4.3:5545303-5545322 | None:intergenic | 15.0% |
| !!! | TACTTCTTTTTATTTTTATG+TGG | - | chr4.3:5545552-5545571 | MS.gene55726:CDS | 15.0% |
| !! | TAAATAATTCTTCCTTTGTA+GGG | - | chr4.3:5545578-5545597 | MS.gene55726:CDS | 20.0% |
| !! | TACAAAGGAAGAATTATTTA+AGG | + | chr4.3:5545578-5545597 | None:intergenic | 20.0% |
| !! | TTAAAAAGTTTCAATTGTCA+CGG | + | chr4.3:5544635-5544654 | None:intergenic | 20.0% |
| !! | TTAAATAATTCTTCCTTTGT+AGG | - | chr4.3:5545577-5545596 | MS.gene55726:CDS | 20.0% |
| !! | TTCTAATTCTATTAGAAGTA+AGG | - | chr4.3:5545241-5545260 | MS.gene55726:CDS | 20.0% |
| !!! | AGTTTTCATCTTTATTTCTA+TGG | - | chr4.3:5544692-5544711 | MS.gene55726:intron | 20.0% |
| !!! | ATAATATTTAGGTTGATAGA+AGG | - | chr4.3:5544775-5544794 | MS.gene55726:intron | 20.0% |
| !!! | ATGATAGAAATTTTCATTCA+TGG | + | chr4.3:5543845-5543864 | None:intergenic | 20.0% |
| !!! | TGAAAACTAACAGTTTTTAT+TGG | + | chr4.3:5544680-5544699 | None:intergenic | 20.0% |
| ! | AAAAGATTGTAAACCAATAG+AGG | + | chr4.3:5544088-5544107 | None:intergenic | 25.0% |
| ! | AATCATCATTTACAAGATCA+AGG | - | chr4.3:5544126-5544145 | MS.gene55726:intron | 25.0% |
| ! | AATTAATATATGACCTTGTG+TGG | + | chr4.3:5545667-5545686 | None:intergenic | 25.0% |
| ! | ACAACATACATATGAAAAGA+TGG | + | chr4.3:5545463-5545482 | None:intergenic | 25.0% |
| ! | ATCATCATTTACAAGATCAA+GGG | - | chr4.3:5544127-5544146 | MS.gene55726:intron | 25.0% |
| ! | ATTTCAACAAATCAACATGA+TGG | - | chr4.3:5545058-5545077 | MS.gene55726:CDS | 25.0% |
| ! | GAAACTAACAAAAAATGCTT+AGG | + | chr4.3:5545420-5545439 | None:intergenic | 25.0% |
| ! | TAAAAAGTTTCAATTGTCAC+GGG | + | chr4.3:5544634-5544653 | None:intergenic | 25.0% |
| ! | TATTGGTAAGAAAAGGAAAA+AGG | + | chr4.3:5544663-5544682 | None:intergenic | 25.0% |
| !! | AATCAAAGACTCTTAACTTT+TGG | - | chr4.3:5544516-5544535 | MS.gene55726:CDS | 25.0% |
| !! | CAGTTTTTATTGGTAAGAAA+AGG | + | chr4.3:5544670-5544689 | None:intergenic | 25.0% |
| !!! | ATTTTAGGTGTTTGAAAGAT+GGG | - | chr4.3:5544910-5544929 | MS.gene55726:intron | 25.0% |
| !!! | TTTCATCTTTATTTCTATGG+TGG | - | chr4.3:5544695-5544714 | MS.gene55726:intron | 25.0% |
| AAAAAGTTTCAATTGTCACG+GGG | + | chr4.3:5544633-5544652 | None:intergenic | 30.0% | |
| AAACTAAGTCAACAACATGT+TGG | - | chr4.3:5543799-5543818 | MS.gene55726:intron | 30.0% | |
| AAGATGTTGTTGATGTTGTT+TGG | + | chr4.3:5543713-5543732 | None:intergenic | 30.0% | |
| AGATGTTTAATCTCACTACA+GGG | - | chr4.3:5543668-5543687 | MS.gene55726:intron | 30.0% | |
| AGCACTATTGTAATCAAATG+AGG | - | chr4.3:5544802-5544821 | MS.gene55726:intron | 30.0% | |
| AGTTCAACAATAAGCAAAGT+TGG | - | chr4.3:5544277-5544296 | MS.gene55726:CDS | 30.0% | |
| ATAATATACCTCTTCTAGCA+TGG | + | chr4.3:5544403-5544422 | None:intergenic | 30.0% | |
| ATGAAAAGATGGAATCTGAA+TGG | + | chr4.3:5545452-5545471 | None:intergenic | 30.0% | |
| ATGTGGAAAACAAATTTCTC+AGG | - | chr4.3:5543775-5543794 | MS.gene55726:intron | 30.0% | |
| ATTGTAAACCAATAGAGGAA+GGG | + | chr4.3:5544083-5544102 | None:intergenic | 30.0% | |
| CAAACAACAAGAAAAGCAAT+GGG | - | chr4.3:5544948-5544967 | MS.gene55726:CDS | 30.0% | |
| GTTCAACAATAAGCAAAGTT+GGG | - | chr4.3:5544278-5544297 | MS.gene55726:CDS | 30.0% | |
| TCAAACAACAAGAAAAGCAA+TGG | - | chr4.3:5544947-5544966 | MS.gene55726:CDS | 30.0% | |
| TGAAATCTTGATGTTGTTGT+TGG | + | chr4.3:5543870-5543889 | None:intergenic | 30.0% | |
| TGATCAGAATCTAAACAACA+TGG | - | chr4.3:5543912-5543931 | MS.gene55726:intron | 30.0% | |
| ! | AAGCTATGTCAAGACATTTT+AGG | - | chr4.3:5544895-5544914 | MS.gene55726:intron | 30.0% |
| ! | ATGAGATTGGTGTCTTAATT+TGG | - | chr4.3:5544551-5544570 | MS.gene55726:CDS | 30.0% |
| !! | ATGGTTTTTGAAGAAGAAGA+GGG | + | chr4.3:5543826-5543845 | None:intergenic | 30.0% |
| !! | CATTTTAGGTGTTTGAAAGA+TGG | - | chr4.3:5544909-5544928 | MS.gene55726:intron | 30.0% |
| !! | CTATCAAGTATTTTAAGCCT+AGG | + | chr4.3:5545017-5545036 | None:intergenic | 30.0% |
| AACGTTCTGTTTCAATTCTC+AGG | - | chr4.3:5545117-5545136 | MS.gene55726:CDS | 35.0% | |
| AACTATTGGCAGTTGTGTTA+TGG | - | chr4.3:5545320-5545339 | MS.gene55726:CDS | 35.0% | |
| AAGAAGAAATGACCCTACAA+AGG | + | chr4.3:5545593-5545612 | None:intergenic | 35.0% | |
| ACGATTCAAACACAAATCCA+AGG | - | chr4.3:5543628-5543647 | MS.gene55726:intron | 35.0% | |
| ACGTTCTGTTTCAATTCTCA+GGG | - | chr4.3:5545118-5545137 | MS.gene55726:CDS | 35.0% | |
| AGAATTGAAACAGAACGTTC+AGG | + | chr4.3:5545116-5545135 | None:intergenic | 35.0% | |
| ATTCATCATCTTCACATCAG+TGG | - | chr4.3:5543962-5543981 | MS.gene55726:intron | 35.0% | |
| CAATTCAACAAACTCTACAG+AGG | + | chr4.3:5544355-5544374 | None:intergenic | 35.0% | |
| GAAGATGACAAAACATCAAG+TGG | - | chr4.3:5543586-5543605 | MS.gene55726:CDS | 35.0% | |
| GAAGATGATAACAACAATGG+TGG | - | chr4.3:5544300-5544319 | MS.gene55726:CDS | 35.0% | |
| GAGATGTTTAATCTCACTAC+AGG | - | chr4.3:5543667-5543686 | MS.gene55726:intron | 35.0% | |
| GATTGTAAACCAATAGAGGA+AGG | + | chr4.3:5544084-5544103 | None:intergenic | 35.0% | |
| GTAGTGAGATTAAACATCTC+TGG | + | chr4.3:5543667-5543686 | None:intergenic | 35.0% | |
| GTCTTTCATTACCTTCACAA+GGG | + | chr4.3:5544023-5544042 | None:intergenic | 35.0% | |
| TGCGAAAGTTTATTCAGCTT+TGG | - | chr4.3:5544866-5544885 | MS.gene55726:intron | 35.0% | |
| TGGATTTGTGTTTGAATCGT+TGG | + | chr4.3:5543628-5543647 | None:intergenic | 35.0% | |
| TGGGAAGATGATAACAACAA+TGG | - | chr4.3:5544297-5544316 | MS.gene55726:CDS | 35.0% | |
| TTGTAATCAAATGAGGAGTG+TGG | - | chr4.3:5544809-5544828 | MS.gene55726:intron | 35.0% | |
| !! | CATGGTTTTTGAAGAAGAAG+AGG | + | chr4.3:5543827-5543846 | None:intergenic | 35.0% |
| !! | CGACGTTGATAAGCATATTT+TGG | - | chr4.3:5545733-5545752 | MS.gene55726:CDS | 35.0% |
| !! | GTTGAAGTAGTTGATGAGAT+TGG | - | chr4.3:5544538-5544557 | MS.gene55726:CDS | 35.0% |
| !! | TTACAAGATCAAGGGTATCA+AGG | - | chr4.3:5544135-5544154 | MS.gene55726:intron | 35.0% |
| ACACAACAAACTCTGTCATG+TGG | - | chr4.3:5543758-5543777 | MS.gene55726:intron | 40.0% | |
| ATACCTCTTCTAGCATGGAA+AGG | + | chr4.3:5544398-5544417 | None:intergenic | 40.0% | |
| ATATGCTTATCAACGTCGCT+TGG | + | chr4.3:5545731-5545750 | None:intergenic | 40.0% | |
| GATGACAAAACATCAAGTGG+TGG | - | chr4.3:5543589-5543608 | MS.gene55726:CDS | 40.0% | |
| GGTAATGAAAGACCAAGTCA+AGG | - | chr4.3:5544030-5544049 | MS.gene55726:intron | 40.0% | |
| GGTCTTTCATTACCTTCACA+AGG | + | chr4.3:5544024-5544043 | None:intergenic | 40.0% | |
| GTTTAATCTCACTACAGGGA+TGG | - | chr4.3:5543672-5543691 | MS.gene55726:intron | 40.0% | |
| TAATTCATACGTGCCACACA+AGG | - | chr4.3:5545651-5545670 | MS.gene55726:CDS | 40.0% | |
| TATGCTTATCAACGTCGCTT+GGG | + | chr4.3:5545730-5545749 | None:intergenic | 40.0% | |
| TCATTGAGAAGTTCTTGTGC+TGG | + | chr4.3:5544195-5544214 | None:intergenic | 40.0% | |
| ! | ACAAATCCAAGGCTTTGTGT+CGG | - | chr4.3:5543639-5543658 | MS.gene55726:intron | 40.0% |
| ! | ACATGATGGAAACACATCCT+TGG | - | chr4.3:5545072-5545091 | MS.gene55726:CDS | 40.0% |
| ! | AGATGTGTTTTCCCTTGTGA+AGG | - | chr4.3:5544009-5544028 | MS.gene55726:intron | 40.0% |
| ! | TCATCATTTGAAGCTGTAGC+TGG | - | chr4.3:5544834-5544853 | MS.gene55726:intron | 40.0% |
| ! | TTTGAAGCTGTAGCTGGAAA+TGG | - | chr4.3:5544840-5544859 | MS.gene55726:intron | 40.0% |
| ACTACAGGGATGGAGATGAT+AGG | - | chr4.3:5543682-5543701 | MS.gene55726:intron | 45.0% | |
| CAACAAAGGGTGAAACACCT+AGG | - | chr4.3:5544997-5545016 | MS.gene55726:CDS | 45.0% | |
| CTGTTTCAATTCTCAGGGCT+TGG | - | chr4.3:5545123-5545142 | MS.gene55726:CDS | 45.0% | |
| GAGAGTGAAAGTCCTTGACT+TGG | + | chr4.3:5544045-5544064 | None:intergenic | 45.0% | |
| GTTGCACCTGGAACAACAAA+GGG | - | chr4.3:5544984-5545003 | MS.gene55726:CDS | 45.0% | |
| TCAGCAAACCCTTCCTCTAT+TGG | - | chr4.3:5544072-5544091 | MS.gene55726:intron | 45.0% | |
| TGTTGCACCTGGAACAACAA+AGG | - | chr4.3:5544983-5545002 | MS.gene55726:CDS | 45.0% | |
| TTTCAATTGTCACGGGGTGA+AGG | + | chr4.3:5544627-5544646 | None:intergenic | 45.0% | |
| ! | TTGTTGTTCCAGGTGCAACA+GGG | + | chr4.3:5544983-5545002 | None:intergenic | 45.0% |
| !! | GTTTCACCCTTTGTTGTTCC+AGG | + | chr4.3:5544993-5545012 | None:intergenic | 45.0% |
| !! | TTTGTTGTTCCAGGTGCAAC+AGG | + | chr4.3:5544984-5545003 | None:intergenic | 45.0% |
| !!! | TTTTTTTGTATAATTTTTAT+AGG | - | chr4.3:5545702-5545721 | MS.gene55726:CDS | 5.0% |
| GAAAAAGACCCTGTTGCACC+TGG | - | chr4.3:5544972-5544991 | MS.gene55726:CDS | 50.0% | |
| GCTCCTTTCCATGCTAGAAG+AGG | - | chr4.3:5544392-5544411 | MS.gene55726:CDS | 50.0% | |
| !! | TTCTTGAGAGACCGGTTTGG+CGG | + | chr4.3:5545760-5545779 | None:intergenic | 50.0% |
| !!! | CATATTTTGGCCCGCCAAAC+CGG | - | chr4.3:5545746-5545765 | MS.gene55726:CDS | 50.0% |
| AACCGGTCTCTCAAGAAGCC+AGG | - | chr4.3:5545763-5545782 | MS.gene55726:CDS | 55.0% | |
| AGACCACGTTGAGGTCTCCA+AGG | + | chr4.3:5545092-5545111 | None:intergenic | 55.0% | |
| CATCCTTGGAGACCTCAACG+TGG | - | chr4.3:5545086-5545105 | MS.gene55726:CDS | 55.0% | |
| CGTTCAGGAAGACCACGTTG+AGG | + | chr4.3:5545101-5545120 | None:intergenic | 55.0% | |
| CTGGATCCGACACAAAGCCT+TGG | + | chr4.3:5543648-5543667 | None:intergenic | 55.0% | |
| GGCTTCTTGAGAGACCGGTT+TGG | + | chr4.3:5545763-5545782 | None:intergenic | 55.0% | |
| TGCCTGGCTTCTTGAGAGAC+CGG | + | chr4.3:5545768-5545787 | None:intergenic | 55.0% | |
| !! | TCTTGAGAGACCGGTTTGGC+GGG | + | chr4.3:5545759-5545778 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 5543565 | 5545793 | 5543565 | ID=MS.gene55726 |
| chr4.3 | mRNA | 5543565 | 5545793 | 5543565 | ID=MS.gene55726.t1;Parent=MS.gene55726 |
| chr4.3 | exon | 5544945 | 5545793 | 5544945 | ID=MS.gene55726.t1.exon1;Parent=MS.gene55726.t1 |
| chr4.3 | CDS | 5544945 | 5545793 | 5544945 | ID=cds.MS.gene55726.t1;Parent=MS.gene55726.t1 |
| chr4.3 | exon | 5544190 | 5544572 | 5544190 | ID=MS.gene55726.t1.exon2;Parent=MS.gene55726.t1 |
| chr4.3 | CDS | 5544190 | 5544572 | 5544190 | ID=cds.MS.gene55726.t1;Parent=MS.gene55726.t1 |
| chr4.3 | exon | 5543565 | 5543634 | 5543565 | ID=MS.gene55726.t1.exon3;Parent=MS.gene55726.t1 |
| chr4.3 | CDS | 5543565 | 5543634 | 5543565 | ID=cds.MS.gene55726.t1;Parent=MS.gene55726.t1 |
| Gene Sequence |
| Protein sequence |
