AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058157


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058157.t1 MTR_1g094115 95.957 470 17 2 1 469 71 539 0.0 881
MS.gene058157.t1 MTR_1g094115 95.708 466 18 2 5 469 58 522 0.0 870
MS.gene058157.t1 MTR_1g112270 46.545 492 210 13 1 454 68 544 6.58e-114 347
MS.gene058157.t1 MTR_1g112270 45.984 498 204 13 1 454 79 555 7.34e-114 347
MS.gene058157.t1 MTR_8g017210 90.580 138 13 0 1 138 86 223 2.82e-94 295
MS.gene058157.t1 MTR_2g099990 82.468 154 24 1 1 151 1 154 1.57e-93 289
MS.gene058157.t1 MTR_2g099990 82.468 154 24 1 1 151 70 223 2.08e-93 291
MS.gene058157.t1 MTR_4g059870 41.000 500 190 21 1 462 62 494 7.19e-92 288
MS.gene058157.t1 MTR_1g016010 77.215 158 34 2 1 156 65 222 2.74e-88 277
MS.gene058157.t1 MTR_2g090745 82.609 138 24 0 1 138 31 168 1.47e-86 272
MS.gene058157.t1 MTR_2g093960 81.295 139 25 1 1 138 56 194 1.96e-83 263
MS.gene058157.t1 MTR_2g017720 73.267 101 22 1 1 101 337 432 2.83e-45 164
MS.gene058157.t1 MTR_3g102000 64.646 99 28 2 4 98 36 131 1.51e-36 134
MS.gene058157.t1 MTR_1g093095 35.915 142 76 5 1 129 110 249 2.51e-19 88.6
MS.gene058157.t1 MTR_5g030560 80.645 31 6 0 1 31 30 60 5.99e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058157.t1 AT2G02080 50.114 439 174 16 1 428 1 405 4.64e-113 340
MS.gene058157.t1 AT2G02080 50.114 439 174 16 1 428 1 405 4.64e-113 340
MS.gene058157.t1 AT2G02080 49.886 439 175 16 1 428 78 482 1.54e-112 342
MS.gene058157.t1 AT2G02080 49.886 439 175 16 1 428 78 482 1.54e-112 342
MS.gene058157.t1 AT2G02080 49.886 439 175 16 1 428 78 482 1.54e-112 342
MS.gene058157.t1 AT2G02080 49.886 439 175 16 1 428 78 482 1.54e-112 342
MS.gene058157.t1 AT2G02070 84.568 162 19 2 1 162 76 231 2.48e-97 305
MS.gene058157.t1 AT2G02070 84.568 162 19 2 1 162 76 231 2.48e-97 305
MS.gene058157.t1 AT1G14580 90.141 142 13 1 1 142 77 217 5.14e-95 295
MS.gene058157.t1 AT1G14580 90.141 142 13 1 1 142 77 217 5.14e-95 295
MS.gene058157.t1 AT1G14580 90.141 142 13 1 1 142 91 231 8.20e-95 295
MS.gene058157.t1 AT3G50700 84.397 141 22 0 1 141 58 198 4.96e-92 287
MS.gene058157.t1 AT1G55110 85.616 146 20 1 1 145 87 232 1.28e-91 286
MS.gene058157.t1 AT1G55110 85.616 146 20 1 1 145 87 232 1.28e-91 286
MS.gene058157.t1 AT1G55110 85.616 146 20 1 1 145 87 232 1.28e-91 286
MS.gene058157.t1 AT5G66730 85.106 141 21 0 1 141 56 196 4.18e-91 286
MS.gene058157.t1 AT3G45260 68.000 200 55 2 1 191 63 262 9.70e-91 283
MS.gene058157.t1 AT3G45260 68.000 200 55 2 1 191 63 262 9.70e-91 283
MS.gene058157.t1 AT1G03840 83.333 138 23 0 1 138 63 200 2.02e-88 279
MS.gene058157.t1 AT1G03840 83.333 138 23 0 1 138 65 202 2.22e-88 279
MS.gene058157.t1 AT5G03150 80.128 156 26 2 1 151 77 232 1.45e-87 277
MS.gene058157.t1 AT3G13810 86.331 139 18 1 1 138 75 213 1.72e-87 276
MS.gene058157.t1 AT3G13810 86.331 139 18 1 1 138 81 219 1.73e-87 276
MS.gene058157.t1 AT3G13810 86.331 139 18 1 1 138 94 232 2.00e-87 277
MS.gene058157.t1 AT3G13810 86.331 139 18 1 1 138 94 232 2.00e-87 277
MS.gene058157.t1 AT3G13810 86.331 139 18 1 1 138 89 227 2.31e-87 276
MS.gene058157.t1 AT3G13810 86.331 139 18 1 1 138 95 233 2.47e-87 276
MS.gene058157.t1 AT5G44160 84.058 138 22 0 1 138 22 159 3.97e-87 273
MS.gene058157.t1 AT5G44160 84.058 138 22 0 1 138 61 198 6.01e-87 274
MS.gene058157.t1 AT5G60470 76.667 150 32 2 1 147 59 208 1.08e-85 270
MS.gene058157.t1 AT4G02670 76.623 154 26 2 1 144 79 232 3.22e-85 268
MS.gene058157.t1 AT5G60470 76.667 150 32 2 1 147 68 217 4.25e-85 269
MS.gene058157.t1 AT4G02670 76.623 154 26 2 1 144 77 230 4.42e-85 267
MS.gene058157.t1 AT5G60470 76.667 150 32 2 1 147 64 213 4.61e-85 269
MS.gene058157.t1 AT1G25250 44.248 226 98 6 1 222 34 235 3.80e-59 198
MS.gene058157.t1 AT1G25250 44.248 226 98 6 1 222 57 258 4.79e-59 199
MS.gene058157.t1 AT1G68130 48.039 204 87 5 1 202 65 251 5.61e-59 200
MS.gene058157.t1 AT2G01940 62.687 134 48 2 1 132 68 201 1.48e-57 197
MS.gene058157.t1 AT2G01940 61.481 135 49 3 1 132 68 202 6.05e-54 187
MS.gene058157.t1 AT1G68130 46.703 182 78 5 23 202 1 165 6.81e-46 162
MS.gene058157.t1 AT1G25250 42.647 204 89 6 23 222 1 180 6.89e-46 162
MS.gene058157.t1 AT2G01940 62.500 112 40 2 23 132 1 112 3.76e-44 159
MS.gene058157.t1 AT1G34370 34.568 162 92 4 1 148 29 190 5.72e-21 93.2
MS.gene058157.t1 AT1G34370 34.568 162 92 4 1 148 239 400 8.70e-21 95.5
MS.gene058157.t1 AT1G34370 34.568 162 92 4 1 148 239 400 8.70e-21 95.5
MS.gene058157.t1 AT5G22890 32.168 143 83 3 1 129 212 354 1.70e-19 90.5
MS.gene058157.t1 AT1G13290 36.000 150 82 6 1 138 96 243 3.82e-19 88.2
MS.gene058157.t1 AT3G20880 34.783 138 80 5 1 129 251 387 1.66e-18 87.8
MS.gene058157.t1 AT1G51220 31.677 161 96 6 1 152 173 328 1.74e-18 87.0
MS.gene058157.t1 AT3G57670 35.971 139 77 6 1 129 212 348 3.90e-18 86.3
MS.gene058157.t1 AT1G08290 37.500 136 72 6 5 129 179 312 1.44e-17 84.3
MS.gene058157.t1 AT1G34790 38.806 134 70 6 6 129 145 276 2.20e-17 83.2

Find 79 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCTTTCATTGCCAAATA+TGG 0.188179 1.4:-73637578 None:intergenic
TTTGCAATTGATGGGATATT+TGG 0.199708 1.4:-73636874 None:intergenic
CCAACTTGATGATCAGTTAA+AGG 0.216330 1.4:-73637274 None:intergenic
GCACATTCAACTCAACATTT+TGG 0.223217 1.4:+73637757 MS.gene058157:CDS
AACAACATCAATGTCACTTT+TGG 0.258147 1.4:+73637466 MS.gene058157:CDS
AATGATGAAGAGTGATTTAA+AGG 0.258726 1.4:-73636995 None:intergenic
GGAAACACATCATCCATATT+TGG 0.261465 1.4:+73637565 MS.gene058157:CDS
TGCTAGTGGATGATGTAATT+TGG 0.279783 1.4:-73636907 None:intergenic
TGGAAATAGAAGTTCAAGTA+TGG 0.282481 1.4:+73637486 MS.gene058157:CDS
CTTTCTCCTTGGCTCTTTGT+TGG 0.310223 1.4:-73634900 None:intergenic
TTAAATCACTCTTCATCATT+TGG 0.318218 1.4:+73636998 MS.gene058157:CDS
TTAAGACACCCTAACCCTTT+TGG 0.323474 1.4:+73636806 MS.gene058157:CDS
CACGACCCTTCAAGAGCTTT+AGG 0.336517 1.4:+73634956 MS.gene058157:CDS
AGCAATCTTAATATGAGATT+TGG 0.345761 1.4:+73637595 MS.gene058157:CDS
GATGACAACAACGATCTTCA+TGG 0.372227 1.4:+73637520 MS.gene058157:CDS
AACCATAAGGTTGAAAAGAT+TGG 0.377417 1.4:-73637188 None:intergenic
CAACTTGATGATCAGTTAAA+GGG 0.382761 1.4:-73637273 None:intergenic
ACAAACCATCACATTAGTTT+AGG 0.387648 1.4:+73636851 MS.gene058157:CDS
ATGATCATAAATCAGCTGAT+AGG 0.388164 1.4:+73637422 MS.gene058157:CDS
ATTACTACCTTTGTTATTGT+TGG 0.391654 1.4:-73637398 None:intergenic
TGAGTACTCCCAAAAGGGTT+AGG 0.396876 1.4:-73636815 None:intergenic
TTTGTATTGCCTTGAAGATC+AGG 0.407490 1.4:-73637145 None:intergenic
TTGATAAACTCTATTGCAAA+TGG 0.417216 1.4:+73637544 MS.gene058157:CDS
GTGACAGTTTCATCACTCAT+AGG 0.424200 1.4:+73636750 MS.gene058157:CDS
AATATGCTGTTCAATCTGAT+TGG 0.427517 1.4:+73635056 MS.gene058157:CDS
TGAATTGATCATGAACCATA+AGG 0.429618 1.4:-73637201 None:intergenic
ATGCATCTTCCTGATCTTCA+AGG 0.433107 1.4:+73637136 MS.gene058157:CDS
GCTCAAATATGTTGCAATGA+AGG 0.444416 1.4:+73637782 MS.gene058157:CDS
TTGAGATTGTTGTTCTTCAA+AGG 0.461712 1.4:-73637077 None:intergenic
CACAAATAAACCTTTCTCCT+TGG 0.464750 1.4:-73634911 None:intergenic
TATGTGAGGTTTGCAACAAA+GGG 0.467995 1.4:+73634807 MS.gene058157:CDS
TGATGGACGCATGTGGGCTC+AGG 0.479979 1.4:-73634935 None:intergenic
CCTTTAACTGATCATCAAGT+TGG 0.480218 1.4:+73637274 MS.gene058157:CDS
GAAGAGGACACAATCTTCCT+TGG 0.488329 1.4:+73634861 MS.gene058157:CDS
AATTGATGAGTACTCCCAAA+AGG 0.490054 1.4:-73636821 None:intergenic
CAACAAAGAGCCAAGGAGAA+AGG 0.497525 1.4:+73634901 MS.gene058157:CDS
TAAACTAATGTGATGGTTTG+TGG 0.499948 1.4:-73636849 None:intergenic
TGATCATAAATCAGCTGATA+GGG 0.500020 1.4:+73637423 MS.gene058157:CDS
ATTAAGTGTTGTTCAAACTT+TGG 0.503007 1.4:-73636962 None:intergenic
AATCTTAATATGAGATTTGG+TGG 0.509729 1.4:+73637598 MS.gene058157:CDS
CAAAATGTTGTTATTGCTAG+TGG 0.510794 1.4:-73636921 None:intergenic
GAGTACTCCCAAAAGGGTTA+GGG 0.513767 1.4:-73636814 None:intergenic
TTGAAGAATGGTGATGAAGA+TGG 0.514253 1.4:-73637031 None:intergenic
ATATGTGAGGTTTGCAACAA+AGG 0.517578 1.4:+73634806 MS.gene058157:CDS
TAATGTAAAGTGTTGTTCCT+TGG 0.521540 1.4:-73637240 None:intergenic
TTTGCAACAAAGGGTTTCAA+AGG 0.521693 1.4:+73634816 MS.gene058157:CDS
TTGCAACAAAGGGTTTCAAA+GGG 0.525797 1.4:+73634817 MS.gene058157:CDS
ATTGATGAGTACTCCCAAAA+GGG 0.530292 1.4:-73636820 None:intergenic
ATTGTGGCACCCTCTTCTCT+AGG 0.536248 1.4:+73635122 MS.gene058157:CDS
ATATCACACATATTGAAGAA+TGG 0.544344 1.4:-73637043 None:intergenic
AGATCTCCTAAAGCTCTTGA+AGG 0.547138 1.4:-73634962 None:intergenic
ACTTTGGTGGTGTTGATCCA+AGG 0.547369 1.4:-73636946 None:intergenic
GTAAGCATGGTGAGAAGAAG+TGG 0.548240 1.4:+73635011 MS.gene058157:CDS
AAAAGTCCAACAAAGAGCCA+AGG 0.555795 1.4:+73634894 MS.gene058157:CDS
AATCTTCAACTTCATAGAAG+AGG 0.557392 1.4:+73634845 MS.gene058157:CDS
AACAAATAGATTTATATGTG+AGG 0.560724 1.4:+73634793 MS.gene058157:CDS
TTTGGCCTAAACTAATGTGA+TGG 0.560847 1.4:-73636856 None:intergenic
AAGCATTACTCTCGTAAGCA+TGG 0.570554 1.4:+73634998 MS.gene058157:CDS
ATGTTTGTTACCTAGAGAAG+AGG 0.572256 1.4:-73635132 None:intergenic
AAGCTCTTGAAGGGTCGTGA+TGG 0.580721 1.4:-73634952 None:intergenic
TTCTTAAACAAACAACTACA+TGG 0.582618 1.4:+73637109 MS.gene058157:CDS
TGACAGTTTCATCACTCATA+GGG 0.582640 1.4:+73636751 MS.gene058157:CDS
TGTTTGTTACCTAGAGAAGA+GGG 0.585590 1.4:-73635131 None:intergenic
AGAGAATATAGATGTGATTG+TGG 0.589973 1.4:+73635106 MS.gene058157:CDS
AGAGCTTTAGGAGATCTCAC+TGG 0.591272 1.4:+73634968 MS.gene058157:CDS
AAGTGTTGTTCAAACTTTGG+TGG 0.596159 1.4:-73636959 None:intergenic
ATGGTCAGAAACATGAGTGG+TGG 0.622609 1.4:+73637661 MS.gene058157:CDS
AAAGCACATTCTAAGACTTG+TGG 0.628477 1.4:+73635079 MS.gene058157:CDS
AGGGTCGTGATGGACGCATG+TGG 0.629562 1.4:-73634942 None:intergenic
GATCTCCTAAAGCTCTTGAA+GGG 0.629745 1.4:-73634961 None:intergenic
GGGTCGTGATGGACGCATGT+GGG 0.641981 1.4:-73634941 None:intergenic
TGACATGATGAATACTAGCA+TGG 0.643758 1.4:+73637708 MS.gene058157:CDS
AATTCTACCAACAATAACAA+AGG 0.649478 1.4:+73637391 MS.gene058157:CDS
TTTGTCAATTCAATGCAACA+TGG 0.650949 1.4:+73637298 MS.gene058157:CDS
GATGAAGAGTGATTTAAAGG+TGG 0.652236 1.4:-73636992 None:intergenic
AATAACATGAGTAGTAACCA+AGG 0.673138 1.4:+73637223 MS.gene058157:CDS
AATGCAGTGGCAGACATGTG+AGG 0.674772 1.4:-73637337 None:intergenic
GAAGAACAACAATCTCAACA+AGG 0.728667 1.4:+73637082 MS.gene058157:CDS
GGAATGGTCAGAAACATGAG+TGG 0.767875 1.4:+73637658 MS.gene058157:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATGAAAAAAAAAGA+AGG - chr1.4:73636439-73636458 None:intergenic 10.0%
!! ATATTCATTACACAAAAATA+TGG + chr1.4:73636527-73636546 MS.gene058157:intron 15.0%
!! CGAATTCTTATAATAAAAAT+TGG - chr1.4:73635335-73635354 None:intergenic 15.0%
!! TATTCATTACACAAAAATAT+GGG + chr1.4:73636528-73636547 MS.gene058157:intron 15.0%
!!! AAACTCATTTTTAGTAAAAA+TGG + chr1.4:73636642-73636661 MS.gene058157:intron 15.0%
!!! AAATTAACTTTAGATTTTCT+TGG + chr1.4:73637628-73637647 MS.gene058157:CDS 15.0%
!!! ATATCATTGACAATTTTTTT+TGG - chr1.4:73636690-73636709 None:intergenic 15.0%
!!! TAATTCTTTGTGATTAATTT+TGG + chr1.4:73636720-73636739 MS.gene058157:intron 15.0%
!!! TACCTTTTTCATATAATAAA+AGG + chr1.4:73635603-73635622 MS.gene058157:intron 15.0%
!!! TATCATTGACAATTTTTTTT+GGG - chr1.4:73636689-73636708 None:intergenic 15.0%
!! AAAAAAGACAACGATATATA+AGG - chr1.4:73635482-73635501 None:intergenic 20.0%
!! AACAAATAGATTTATATGTG+AGG + chr1.4:73634793-73634812 MS.gene058157:CDS 20.0%
!! AATACTCAAAAACTTCAATA+TGG - chr1.4:73636226-73636245 None:intergenic 20.0%
!! AGAAAATTCTCTTCATTAAT+TGG + chr1.4:73636083-73636102 MS.gene058157:intron 20.0%
!! ATACTCAAAAACTTCAATAT+GGG - chr1.4:73636225-73636244 None:intergenic 20.0%
!! ATTATAATATGAACTTCCAA+AGG + chr1.4:73636551-73636570 MS.gene058157:intron 20.0%
!! GGTAATTAAATTGAAGAATA+GGG - chr1.4:73636060-73636079 None:intergenic 20.0%
!! TAGCATATATTATATATACG+TGG - chr1.4:73635224-73635243 None:intergenic 20.0%
!! TGGTAATTAAATTGAAGAAT+AGG - chr1.4:73636061-73636080 None:intergenic 20.0%
!!! AAAAAATCAATTTTGGTTCT+AGG + chr1.4:73635871-73635890 MS.gene058157:intron 20.0%
!!! AAAAATCAATTTTGGTTCTA+GGG + chr1.4:73635872-73635891 MS.gene058157:intron 20.0%
!!! AAGTTTGATTTAGAAATTCT+TGG + chr1.4:73636308-73636327 MS.gene058157:intron 20.0%
!!! ACAAAATTTGAAATGTTTGA+AGG + chr1.4:73635847-73635866 MS.gene058157:intron 20.0%
!!! ATTTTTAGTAAAAATGGTAG+GGG + chr1.4:73636648-73636667 MS.gene058157:intron 20.0%
!!! CACCTTTTATTATATGAAAA+AGG - chr1.4:73635608-73635627 None:intergenic 20.0%
!!! CATTTTTAGTAAAAATGGTA+GGG + chr1.4:73636647-73636666 MS.gene058157:intron 20.0%
!!! TCATTTTAATTTGTTACAAG+TGG + chr1.4:73636449-73636468 MS.gene058157:intron 20.0%
!!! TCATTTTTAGTAAAAATGGT+AGG + chr1.4:73636646-73636665 MS.gene058157:intron 20.0%
!!! TGAAGGAAAAAAATCAATTT+TGG + chr1.4:73635864-73635883 MS.gene058157:intron 20.0%
! AAAAGTTAGGGTTACTTATA+TGG + chr1.4:73635252-73635271 MS.gene058157:intron 25.0%
! AACTTTGTTCTCATATGAAT+TGG + chr1.4:73635944-73635963 MS.gene058157:intron 25.0%
! AATCTTAATATGAGATTTGG+TGG + chr1.4:73637598-73637617 MS.gene058157:CDS 25.0%
! AATGATGAAGAGTGATTTAA+AGG - chr1.4:73636998-73637017 None:intergenic 25.0%
! AATTCTACCAACAATAACAA+AGG + chr1.4:73637391-73637410 MS.gene058157:CDS 25.0%
! ACGTGAATGTTAATAGATTA+TGG - chr1.4:73635906-73635925 None:intergenic 25.0%
! AGCAATCTTAATATGAGATT+TGG + chr1.4:73637595-73637614 MS.gene058157:CDS 25.0%
! ATATATAGTCATGTTTGTCA+TGG + chr1.4:73636115-73636134 MS.gene058157:intron 25.0%
! ATATCACACATATTGAAGAA+TGG - chr1.4:73637046-73637065 None:intergenic 25.0%
! CGTGAATGTTAATAGATTAT+GGG - chr1.4:73635905-73635924 None:intergenic 25.0%
! CTCTTTAAACTTCTTTACTA+AGG + chr1.4:73635578-73635597 MS.gene058157:intron 25.0%
! TAAACTACAATAGAAGTAGA+GGG - chr1.4:73636365-73636384 None:intergenic 25.0%
! TAAATCAAACTTCCAATTTG+AGG - chr1.4:73636300-73636319 None:intergenic 25.0%
! TACTCAAAAACTTCAATATG+GGG - chr1.4:73636224-73636243 None:intergenic 25.0%
! TTAAATCACTCTTCATCATT+TGG + chr1.4:73636998-73637017 MS.gene058157:CDS 25.0%
! TTCTTAAACAAACAACTACA+TGG + chr1.4:73637109-73637128 MS.gene058157:CDS 25.0%
! TTGATAAACTCTATTGCAAA+TGG + chr1.4:73637544-73637563 MS.gene058157:CDS 25.0%
!! AGAAGGTTAATTGATTTAAG+TGG - chr1.4:73636422-73636441 None:intergenic 25.0%
!! ATATAAGTAACCCTAACTTT+TGG - chr1.4:73635253-73635272 None:intergenic 25.0%
!! ATTAAGTGTTGTTCAAACTT+TGG - chr1.4:73636965-73636984 None:intergenic 25.0%
!! TAATGAAGAGAATTTTCTGT+TGG - chr1.4:73636081-73636100 None:intergenic 25.0%
!! TAGAATATAGACAAGTATTG+AGG + chr1.4:73636176-73636195 MS.gene058157:intron 25.0%
!! TGTATTTGAATTTTGAACAC+TGG - chr1.4:73636012-73636031 None:intergenic 25.0%
!!! AGCTCTTGTTAACTTTTTTT+TGG - chr1.4:73635727-73635746 None:intergenic 25.0%
!!! ATTACTACCTTTGTTATTGT+TGG - chr1.4:73637401-73637420 None:intergenic 25.0%
!!! ATTGACAATTTTTTTTGGGT+GGG - chr1.4:73636685-73636704 None:intergenic 25.0%
!!! GCTCTTGTTAACTTTTTTTT+GGG - chr1.4:73635726-73635745 None:intergenic 25.0%
!!! TCTTGGTTTGTTTCATATTT+TGG + chr1.4:73636325-73636344 MS.gene058157:intron 25.0%
AAAAGAGTTATGTTCACCTT+TGG - chr1.4:73636570-73636589 None:intergenic 30.0%
AAACACAAACTAACAGAGAA+AGG - chr1.4:73635755-73635774 None:intergenic 30.0%
AACACAAACTAACAGAGAAA+GGG - chr1.4:73635754-73635773 None:intergenic 30.0%
AACCATAAGGTTGAAAAGAT+TGG - chr1.4:73637191-73637210 None:intergenic 30.0%
AATAACATGAGTAGTAACCA+AGG + chr1.4:73637223-73637242 MS.gene058157:CDS 30.0%
AATATGCTGTTCAATCTGAT+TGG + chr1.4:73635056-73635075 MS.gene058157:CDS 30.0%
AATCTTCAACTTCATAGAAG+AGG + chr1.4:73634845-73634864 MS.gene058157:CDS 30.0%
AATTAGAGCTGAAAATGAAG+AGG - chr1.4:73635506-73635525 None:intergenic 30.0%
AGAGAATATAGATGTGATTG+TGG + chr1.4:73635106-73635125 MS.gene058157:CDS 30.0%
ATCAAAGAAAGACCTCAAAT+TGG + chr1.4:73636285-73636304 MS.gene058157:intron 30.0%
ATGATCATAAATCAGCTGAT+AGG + chr1.4:73637422-73637441 MS.gene058157:CDS 30.0%
ATTAAACCCACCAAATACAA+AGG - chr1.4:73636478-73636497 None:intergenic 30.0%
ATTGCTTTCATTGCCAAATA+TGG - chr1.4:73637581-73637600 None:intergenic 30.0%
GTAAACTACAATAGAAGTAG+AGG - chr1.4:73636366-73636385 None:intergenic 30.0%
TAAACTAATGTGATGGTTTG+TGG - chr1.4:73636852-73636871 None:intergenic 30.0%
TGAATTGATCATGAACCATA+AGG - chr1.4:73637204-73637223 None:intergenic 30.0%
TGATCATAAATCAGCTGATA+GGG + chr1.4:73637423-73637442 MS.gene058157:CDS 30.0%
TGGAAATAGAAGTTCAAGTA+TGG + chr1.4:73637486-73637505 MS.gene058157:CDS 30.0%
TGTGATATAACGAATTCTCT+TGG + chr1.4:73636153-73636172 MS.gene058157:intron 30.0%
TGTTCTCATATGAATTGGAA+TGG + chr1.4:73635949-73635968 MS.gene058157:intron 30.0%
TTAGGGTTACTTATATGGTT+TGG + chr1.4:73635257-73635276 MS.gene058157:intron 30.0%
TTTGCAATTGATGGGATATT+TGG - chr1.4:73636877-73636896 None:intergenic 30.0%
TTTGTCAATTCAATGCAACA+TGG + chr1.4:73637298-73637317 MS.gene058157:CDS 30.0%
! ACAAACCATCACATTAGTTT+AGG + chr1.4:73636851-73636870 MS.gene058157:CDS 30.0%
! CAAAATGTTGTTATTGCTAG+TGG - chr1.4:73636924-73636943 None:intergenic 30.0%
! CAACTTGATGATCAGTTAAA+GGG - chr1.4:73637276-73637295 None:intergenic 30.0%
! CTGATGATTTTGCAATTGAT+GGG - chr1.4:73636885-73636904 None:intergenic 30.0%
! TAGTGAAGGTGTATATTGTA+TGG + chr1.4:73635781-73635800 MS.gene058157:intron 30.0%
! TCTGATGATTTTGCAATTGA+TGG - chr1.4:73636886-73636905 None:intergenic 30.0%
! TGACCATTTTCTTTGCAAAT+CGG - chr1.4:73635404-73635423 None:intergenic 30.0%
! TTCCAATCTTTTCAACCTTA+TGG + chr1.4:73637186-73637205 MS.gene058157:CDS 30.0%
! TTGAGATTGTTGTTCTTCAA+AGG - chr1.4:73637080-73637099 None:intergenic 30.0%
!! ACTTTAGATTTTCTTGGTGT+TGG + chr1.4:73637634-73637653 MS.gene058157:CDS 30.0%
!! TAATGTAAAGTGTTGTTCCT+TGG - chr1.4:73637243-73637262 None:intergenic 30.0%
!! TTCTCTGTTAGTTTGTGTTT+GGG + chr1.4:73635755-73635774 MS.gene058157:intron 30.0%
!! TTTCTCTGTTAGTTTGTGTT+TGG + chr1.4:73635754-73635773 MS.gene058157:intron 30.0%
!! TTTGTGATTAATTTTGGTGC+AGG + chr1.4:73636726-73636745 MS.gene058157:intron 30.0%
!!! AACAACATCAATGTCACTTT+TGG + chr1.4:73637466-73637485 MS.gene058157:CDS 30.0%
!!! AGGTGAACATAACTCTTTTT+TGG + chr1.4:73636571-73636590 MS.gene058157:intron 30.0%
!!! ATATTTTGGCATAATCCCAT+GGG + chr1.4:73636339-73636358 MS.gene058157:intron 30.0%
!!! CATTGACAATTTTTTTTGGG+TGG - chr1.4:73636686-73636705 None:intergenic 30.0%
AATTGATGAGTACTCCCAAA+AGG - chr1.4:73636824-73636843 None:intergenic 35.0%
ATATGTGAGGTTTGCAACAA+AGG + chr1.4:73634806-73634825 MS.gene058157:CDS 35.0%
ATTGATGAGTACTCCCAAAA+GGG - chr1.4:73636823-73636842 None:intergenic 35.0%
CACAAATAAACCTTTCTCCT+TGG - chr1.4:73634914-73634933 None:intergenic 35.0%
CCTTTAACTGATCATCAAGT+TGG + chr1.4:73637274-73637293 MS.gene058157:CDS 35.0%
CTTCAAAAAGCTTCTCAGAT+TGG + chr1.4:73637361-73637380 MS.gene058157:CDS 35.0%
GAAGAACAACAATCTCAACA+AGG + chr1.4:73637082-73637101 MS.gene058157:CDS 35.0%
GATGAAGAGTGATTTAAAGG+TGG - chr1.4:73636995-73637014 None:intergenic 35.0%
GGAAACACATCATCCATATT+TGG + chr1.4:73637565-73637584 MS.gene058157:CDS 35.0%
GTTGCTTGCATTTATTGAGT+AGG + chr1.4:73636198-73636217 MS.gene058157:intron 35.0%
TATGTGAGGTTTGCAACAAA+GGG + chr1.4:73634807-73634826 MS.gene058157:CDS 35.0%
TGACAGTTTCATCACTCATA+GGG + chr1.4:73636751-73636770 MS.gene058157:CDS 35.0%
TGACATGATGAATACTAGCA+TGG + chr1.4:73637708-73637727 MS.gene058157:CDS 35.0%
TTGCAACAAAGGGTTTCAAA+GGG + chr1.4:73634817-73634836 MS.gene058157:CDS 35.0%
TTTGCAACAAAGGGTTTCAA+AGG + chr1.4:73634816-73634835 MS.gene058157:CDS 35.0%
TTTGGCCTAAACTAATGTGA+TGG - chr1.4:73636859-73636878 None:intergenic 35.0%
TTTGTATTGCCTTGAAGATC+AGG - chr1.4:73637148-73637167 None:intergenic 35.0%
! AAGTGTTGTTCAAACTTTGG+TGG - chr1.4:73636962-73636981 None:intergenic 35.0%
! AATAACAACATTTTGCGCCT+TGG + chr1.4:73636929-73636948 MS.gene058157:CDS 35.0%
! ATGTTTGTTACCTAGAGAAG+AGG - chr1.4:73635135-73635154 None:intergenic 35.0%
! CATCCGATTTGCAAAGAAAA+TGG + chr1.4:73635398-73635417 MS.gene058157:intron 35.0%
! CCAACTTGATGATCAGTTAA+AGG - chr1.4:73637277-73637296 None:intergenic 35.0%
! GCACATTCAACTCAACATTT+TGG + chr1.4:73637757-73637776 MS.gene058157:CDS 35.0%
! TCCATGTTCTTTTCAGCAAT+GGG + chr1.4:73636034-73636053 MS.gene058157:intron 35.0%
! TGCTAGTGGATGATGTAATT+TGG - chr1.4:73636910-73636929 None:intergenic 35.0%
! TGTTTGTTACCTAGAGAAGA+GGG - chr1.4:73635134-73635153 None:intergenic 35.0%
! TTCCATGTTCTTTTCAGCAA+TGG + chr1.4:73636033-73636052 MS.gene058157:intron 35.0%
! TTGAAGAATGGTGATGAAGA+TGG - chr1.4:73637034-73637053 None:intergenic 35.0%
!! AAAGCACATTCTAAGACTTG+TGG + chr1.4:73635079-73635098 MS.gene058157:CDS 35.0%
!!! CATATTTTGGCATAATCCCA+TGG + chr1.4:73636338-73636357 MS.gene058157:intron 35.0%
!!! GAGTTGAATGTGCTGATTTT+AGG - chr1.4:73637750-73637769 None:intergenic 35.0%
!!! GCTACTTTTGCCAAAAGTTA+GGG + chr1.4:73635240-73635259 MS.gene058157:intron 35.0%
!!! TGCTACTTTTGCCAAAAGTT+AGG + chr1.4:73635239-73635258 MS.gene058157:intron 35.0%
!!! TTAGATTTTCTTGGTGTTGG+AGG + chr1.4:73637637-73637656 MS.gene058157:CDS 35.0%
AAAAGTCCAACAAAGAGCCA+AGG + chr1.4:73634894-73634913 MS.gene058157:CDS 40.0%
AAGCATTACTCTCGTAAGCA+TGG + chr1.4:73634998-73635017 MS.gene058157:CDS 40.0%
AGATCTCCTAAAGCTCTTGA+AGG - chr1.4:73634965-73634984 None:intergenic 40.0%
ATGAATTGGAATGGAGATGC+TGG + chr1.4:73635958-73635977 MS.gene058157:intron 40.0%
ATGCATCTTCCTGATCTTCA+AGG + chr1.4:73637136-73637155 MS.gene058157:CDS 40.0%
CAAGTGGCTACCTTTGTATT+TGG + chr1.4:73636465-73636484 MS.gene058157:intron 40.0%
GATCTCCTAAAGCTCTTGAA+GGG - chr1.4:73634964-73634983 None:intergenic 40.0%
GATGACAACAACGATCTTCA+TGG + chr1.4:73637520-73637539 MS.gene058157:CDS 40.0%
GTGACAGTTTCATCACTCAT+AGG + chr1.4:73636750-73636769 MS.gene058157:CDS 40.0%
TGAATTGGAATGGAGATGCT+GGG + chr1.4:73635959-73635978 MS.gene058157:intron 40.0%
TGGCTACCTTTGTATTTGGT+GGG + chr1.4:73636469-73636488 MS.gene058157:intron 40.0%
TTGTGTTTGGGTGTTAGTGA+AGG + chr1.4:73635767-73635786 MS.gene058157:intron 40.0%
! TAAGACACCCTAACCCTTTT+GGG + chr1.4:73636807-73636826 MS.gene058157:CDS 40.0%
! TTAAGACACCCTAACCCTTT+TGG + chr1.4:73636806-73636825 MS.gene058157:CDS 40.0%
!! GACTTTTGCTTTAGCTTCCA+AGG - chr1.4:73634881-73634900 None:intergenic 40.0%
!!! AGCTTTTTGAAGCAATGCAG+TGG - chr1.4:73637353-73637372 None:intergenic 40.0%
!!! TTTTCTTGGTGTTGGAGGAA+TGG + chr1.4:73637642-73637661 MS.gene058157:CDS 40.0%
AATAGAAGTAGAGGGCCCAT+GGG - chr1.4:73636357-73636376 None:intergenic 45.0%
AGGTGTATATTGTATGGCGC+AGG + chr1.4:73635787-73635806 MS.gene058157:intron 45.0%
ATGGTCAGAAACATGAGTGG+TGG + chr1.4:73637661-73637680 MS.gene058157:CDS 45.0%
CAACAAAGAGCCAAGGAGAA+AGG + chr1.4:73634901-73634920 MS.gene058157:CDS 45.0%
GAAGAGGACACAATCTTCCT+TGG + chr1.4:73634861-73634880 MS.gene058157:CDS 45.0%
GAGTACTCCCAAAAGGGTTA+GGG - chr1.4:73636817-73636836 None:intergenic 45.0%
GCCCATTGCTGAAAAGAACA+TGG - chr1.4:73636038-73636057 None:intergenic 45.0%
GGAATGGTCAGAAACATGAG+TGG + chr1.4:73637658-73637677 MS.gene058157:CDS 45.0%
GTAAGCATGGTGAGAAGAAG+TGG + chr1.4:73635011-73635030 MS.gene058157:CDS 45.0%
GTGGCTACCTTTGTATTTGG+TGG + chr1.4:73636468-73636487 MS.gene058157:intron 45.0%
TGAGTACTCCCAAAAGGGTT+AGG - chr1.4:73636818-73636837 None:intergenic 45.0%
! CTTTCTCCTTGGCTCTTTGT+TGG - chr1.4:73634903-73634922 None:intergenic 45.0%
!! ACTTTGGTGGTGTTGATCCA+AGG - chr1.4:73636949-73636968 None:intergenic 45.0%
!! AGAGCTTTAGGAGATCTCAC+TGG + chr1.4:73634968-73634987 MS.gene058157:CDS 45.0%
!! TATAATTTATATAATCAATT+AGG + chr1.4:73636498-73636517 MS.gene058157:intron 5.0%
AAGCTCTTGAAGGGTCGTGA+TGG - chr1.4:73634955-73634974 None:intergenic 50.0%
AATGCAGTGGCAGACATGTG+AGG - chr1.4:73637340-73637359 None:intergenic 50.0%
ATTGTGGCACCCTCTTCTCT+AGG + chr1.4:73635122-73635141 MS.gene058157:CDS 50.0%
CAATAGAAGTAGAGGGCCCA+TGG - chr1.4:73636358-73636377 None:intergenic 50.0%
CACGACCCTTCAAGAGCTTT+AGG + chr1.4:73634956-73634975 MS.gene058157:CDS 50.0%
! TGATGGACGCATGTGGGCTC+AGG - chr1.4:73634938-73634957 None:intergenic 60.0%
!! AGGGTCGTGATGGACGCATG+TGG - chr1.4:73634945-73634964 None:intergenic 60.0%
!! GGGTCGTGATGGACGCATGT+GGG - chr1.4:73634944-73634963 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 73634788 73637801 73634788 ID=MS.gene058157
chr1.4 mRNA 73634788 73637801 73634788 ID=MS.gene058157.t1;Parent=MS.gene058157
chr1.4 exon 73634788 73635143 73634788 ID=MS.gene058157.t1.exon1;Parent=MS.gene058157.t1
chr1.4 CDS 73634788 73635143 73634788 ID=cds.MS.gene058157.t1;Parent=MS.gene058157.t1
chr1.4 exon 73636748 73637801 73636748 ID=MS.gene058157.t1.exon2;Parent=MS.gene058157.t1
chr1.4 CDS 73636748 73637801 73636748 ID=cds.MS.gene058157.t1;Parent=MS.gene058157.t1
Gene Sequence

>MS.gene058157

ATGGCAACAAATAGATTTATATGTGAGGTTTGCAACAAAGGGTTTCAAAGGGAGCAAAATCTTCAACTTCATAGAAGAGGACACAATCTTCCTTGGAAGCTAAAGCAAAAGTCCAACAAAGAGCCAAGGAGAAAGGTTTATTTGTGTCCTGAGCCCACATGCGTCCATCACGACCCTTCAAGAGCTTTAGGAGATCTCACTGGAATTAAAAAGCATTACTCTCGTAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGTACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCTAGGTAACAAACATCAACTTTATATTTATATATCTTCACATCGATGTTAGTCTAATTAATTCACAAATATGAATTCATCACCACGTATATATAATATATGCTACTTTTGCCAAAAGTTAGGGTTACTTATATGGTTTGGTATTGAATATTATTATTTTTTATAGAAGTTAGTGTTGATTATTTTCTTACAACCAATTTTTATTATAAGAATTCGAAAGAGTAAACTAAGTTCTTTTAATCATGTTTTTTTTTTTCATCATCCGATTTGCAAAGAAAATGGTCATAACAATTCGAAAGAGTAAAATTATTGTTTTAACAGTAGATCGAACTCATAGACTCCTTATATATCGTTGTCTTTTTTTCCTCTTCATTTTCAGCTCTAATTTATCTAAATTGAAGTACTCTTTAAACTTTTTTTTTTTTTTTTACAAGAAGTACTCTTTAAACTTCTTTACTAAGGAATACCTTTTTCATATAATAAAAGGTGTGTGTACATAATATAAGTTGAAATTTTTCACAATAACATTCAAGCAAAAACACACAAAAGTTAAATTTGAACAACAGTCTCTTTTATGTTCTTATCCCAAAAAAAAGTTAACAAGAGCTTTCACCCTTTCTCTGTTAGTTTGTGTTTGGGTGTTAGTGAAGGTGTATATTGTATGGCGCAGGAGACTGCATGCACGTGAGTGCACTGTTCAAATGTAGTACAAAATTTGAAATGTTTGAAGGAAAAAAATCAATTTTGGTTCTAGGGAACAGTGCCCATAATCTATTAACATTCACGTGTAGTGAAACAACATTATAACTTTGTTCTCATATGAATTGGAATGGAGATGCTGGGTTTTGTTCTCTTTCTTGTTAGCTATTTCCAGTGTTCAAAATTCAAATACATTTCCATGTTCTTTTCAGCAATGGGCCCTATTCTTCAATTTAATTACCAACAGAAAATTCTCTTCATTAATTGGTCAATCTATATATATAGTCATGTTTGTCATGGATTTGCTAGAAATTATGTGATATAACGAATTCTCTTGGTAGAATATAGACAAGTATTGAGGTTGCTTGCATTTATTGAGTAGGCCCCATATTGAAGTTTTTGAGTATTGACTTTCATCATAGTTGCAAACAATTCTCTCTTTTATTGATCAAAGAAAGACCTCAAATTGGAAGTTTGATTTAGAAATTCTTGGTTTGTTTCATATTTTGGCATAATCCCATGGGCCCTCTACTTCTATTGTAGTTTACTTAATTTCAACTTACTACTAGTTTCAATTAATTCCACTTAAATCAATTAACCTTCTTTTTTTTTCATTTTAATTTGTTACAAGTGGCTACCTTTGTATTTGGTGGGTTTAATTATAATTTATATAATCAATTAGGTTACTCATATTCATTACACAAAAATATGGGATTATAATATGAACTTCCAAAGGTGAACATAACTCTTTTTTGGTAAATTTTAATAAAATATTATATATGTTCTCATTTTTTTATTATTATAAAACTCATTTTTAGTAAAAATGGTAGGGGTCTACATTATACCCACCCAAAAAAAATTGTCAATGATATATATGTTGCTTAATTCTTTGTGATTAATTTTGGTGCAGGCGTGACAGTTTCATCACTCATAGGGCATTTTGTGATGCACTAGCACAAGAGAGTGTATTAAGACACCCTAACCCTTTTGGGAGTACTCATCAATTGTATGCCACAAACCATCACATTAGTTTAGGCCAAATATCCCATCAATTGCAAAATCATCAGAACCAAATTACATCATCCACTAGCAATAACAACATTTTGCGCCTTGGATCAACACCACCAAAGTTTGAACAACACTTAATATCATCACCACCTTTAAATCACTCTTCATCATTTGGACACTCAATTCCATCTTCATCACCATTCTTCAATATGTGTGATATTTCAAATCAATCCTTTGAAGAACAACAATCTCAACAAGGACAATTCTTAAACAAACAACTACATGGTCTAATGCATCTTCCTGATCTTCAAGGCAATACAAATACAAACAATTCAAATTCTTCCAATCTTTTCAACCTTATGGTTCATGATCAATTCAATAACATGAGTAGTAACCAAGGAACAACACTTTACATTAACAACAATAACCCTTTAACTGATCATCAAGTTGGTTTTGTCAATTCAATGCAACATGGTCAAAACATGTCTAGTCCTCACATGTCTGCCACTGCATTGCTTCAAAAAGCTTCTCAGATTGGTTCAACTAATTCTACCAACAATAACAAAGGTAGTAATAATGATCATAAATCAGCTGATAGGGACTTTGTTGTGTCTGATCACAACAACATCAATGTCACTTTTGGAAATAGAAGTTCAAGTATGGAAAATGATCATGATGACAACAACGATCTTCATGGATTGATAAACTCTATTGCAAATGGAAACACATCATCCATATTTGGCAATGAAAGCAATCTTAATATGAGATTTGGTGGATCTGATAAATTAACTTTAGATTTTCTTGGTGTTGGAGGAATGGTCAGAAACATGAGTGGTGGATTTTCACAAACTGAACAACAACGTGACATGATGAATACTAGCATGGCTTCTTTGAATCATGACCTAAAATCAGCACATTCAACTCAACATTTTGGAAGCTCAAATATGTTGCAATGA

Protein sequence

>MS.gene058157.t1

MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESVLRHPNPFGSTHQLYATNHHISLGQISHQLQNHQNQITSSTSNNNILRLGSTPPKFEQHLISSPPLNHSSSFGHSIPSSSPFFNMCDISNQSFEEQQSQQGQFLNKQLHGLMHLPDLQGNTNTNNSNSSNLFNLMVHDQFNNMSSNQGTTLYINNNNPLTDHQVGFVNSMQHGQNMSSPHMSATALLQKASQIGSTNSTNNNKGSNNDHKSADRDFVVSDHNNINVTFGNRSSSMENDHDDNNDLHGLINSIANGNTSSIFGNESNLNMRFGGSDKLTLDFLGVGGMVRNMSGGFSQTEQQRDMMNTSMASLNHDLKSAHSTQHFGSSNMLQ