Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55826.t1 | XP_013447237.1 | 94.3 | 194 | 11 | 0 | 1 | 194 | 1 | 194 | 1.50E-97 | 365.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55826.t1 | Q8VY91 | 65.0 | 206 | 57 | 4 | 5 | 195 | 1 | 206 | 8.4e-65 | 248.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55826.t1 | A0A072TUR4 | 94.3 | 194 | 11 | 0 | 1 | 194 | 1 | 194 | 1.1e-97 | 365.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050163 | MS.gene55826 | 0.848262 | 6.86E-60 | -1.69E-46 |
| MS.gene050165 | MS.gene55826 | 0.847908 | 8.59E-60 | -1.69E-46 |
| MS.gene050333 | MS.gene55826 | 0.808409 | 3.14E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene55826 | 0.800135 | 1.66E-48 | -1.69E-46 |
| MS.gene051810 | MS.gene55826 | 0.809109 | 2.23E-50 | -1.69E-46 |
| MS.gene052916 | MS.gene55826 | 0.805736 | 1.16E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene55826 | 0.809885 | 1.52E-50 | -1.69E-46 |
| MS.gene055397 | MS.gene55826 | 0.800017 | 1.76E-48 | -1.69E-46 |
| MS.gene059677 | MS.gene55826 | 0.814908 | 1.21E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene55826 | 0.807331 | 5.33E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55826.t1 | MTR_8g099720 | 94.330 | 194 | 11 | 0 | 1 | 194 | 1 | 194 | 1.02e-136 | 380 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55826.t1 | AT1G64510 | 65.714 | 210 | 53 | 5 | 1 | 195 | 1 | 206 | 3.43e-89 | 260 |
| MS.gene55826.t1 | AT1G64510 | 65.714 | 210 | 53 | 5 | 1 | 195 | 25 | 230 | 9.74e-89 | 260 |
Find 56 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGACCTCCTCGTACTTC+TGG | 0.218535 | 4.3:-4302382 | None:intergenic |
| CGGAAAAGTTGTTCCTGTTT+TGG | 0.256932 | 4.3:-4302160 | None:intergenic |
| TTTGTGCAGCTTCTTGTTGC+TGG | 0.267997 | 4.3:+4303798 | MS.gene55826:intron |
| TCTTTCTTTGAAGGTGGATT+TGG | 0.299334 | 4.3:+4302212 | MS.gene55826:CDS |
| CTTTGAAGGTGGATTTGGTT+CGG | 0.301133 | 4.3:+4302217 | MS.gene55826:CDS |
| TTCTCTGGTTCTTTCTTTGA+AGG | 0.306160 | 4.3:+4302203 | MS.gene55826:CDS |
| TGAAAGTGGGAAATTGATTC+AGG | 0.316800 | 4.3:-4302137 | None:intergenic |
| TGTTTGCTCAAGGGCGGTTA+TGG | 0.323023 | 4.3:-4303961 | None:intergenic |
| CAAGCTTCAAAATCAGAAAA+AGG | 0.332411 | 4.3:+4304015 | MS.gene55826:CDS |
| TTTCCCACTTTCACCAAAAC+AGG | 0.358476 | 4.3:+4302147 | MS.gene55826:CDS |
| GACCCGGTTACTCCTGGAAC+CGG | 0.365024 | 4.3:+4302245 | MS.gene55826:CDS |
| AACCCGGTTCCAGGAGTAAC+CGG | 0.365845 | 4.3:-4302248 | None:intergenic |
| GCCTAGGGTTTCTGCTTTAA+CGG | 0.367900 | 4.3:-4302180 | None:intergenic |
| TTTGAAGGTGGATTTGGTTC+GGG | 0.368108 | 4.3:+4302218 | MS.gene55826:CDS |
| ACAGCAGTGAACCCGGTTCC+AGG | 0.368389 | 4.3:-4302257 | None:intergenic |
| AGGAGAAACCAACACGTATA+TGG | 0.379973 | 4.3:+4303896 | MS.gene55826:CDS |
| CAGCTTCTTGTTGCTGGAGG+TGG | 0.388533 | 4.3:+4303804 | MS.gene55826:intron |
| GCAGAAACCCTAGGCTTCTC+TGG | 0.408153 | 4.3:+4302188 | MS.gene55826:CDS |
| TTTGACCTCCTCGTACTTCT+GGG | 0.421257 | 4.3:-4302381 | None:intergenic |
| AGAAAAGAAGAAGATGAAAG+TGG | 0.446274 | 4.3:-4302077 | None:intergenic |
| GATTCAGGAAATGCACGAAA+TGG | 0.457389 | 4.3:-4302122 | None:intergenic |
| TCTGGTTCTTTCTTTGAAGG+TGG | 0.458081 | 4.3:+4302206 | MS.gene55826:CDS |
| AGAAAGAACCAGAGAAGCCT+AGG | 0.460314 | 4.3:-4302196 | None:intergenic |
| CGCTCATCCTCAGACATGTC+AGG | 0.460581 | 4.3:-4302347 | None:intergenic |
| CTCTTCCACAGCAGTGAACC+CGG | 0.461041 | 4.3:-4302264 | None:intergenic |
| GCTTCGTGAAGTAGGTGAAT+AGG | 0.462140 | 4.3:-4303932 | None:intergenic |
| GGTGATGACCCGGTTACTCC+TGG | 0.466916 | 4.3:+4302239 | MS.gene55826:CDS |
| CCTTGAGCAAACACTATTGA+CGG | 0.475105 | 4.3:+4303971 | MS.gene55826:CDS |
| ACTCAGACAGTACGAAACTA+TGG | 0.491052 | 4.3:+4302313 | MS.gene55826:CDS |
| GGACTCAGGCTTCGTGAAGT+AGG | 0.512180 | 4.3:-4303940 | None:intergenic |
| TCAAGGGCGGTTATGGACTC+AGG | 0.515051 | 4.3:-4303954 | None:intergenic |
| TTCTGGATGCTATATGCTAG+TGG | 0.517463 | 4.3:-4303861 | None:intergenic |
| ATTTGGTTCGGGTGATGACC+CGG | 0.523594 | 4.3:+4302229 | MS.gene55826:CDS |
| GTGCAGCTTCTTGTTGCTGG+AGG | 0.528018 | 4.3:+4303801 | MS.gene55826:intron |
| TGGAACCGGGTTCACTGCTG+TGG | 0.528777 | 4.3:+4302259 | MS.gene55826:CDS |
| TGGAATTGAATTGAGTAAAG+AGG | 0.543427 | 4.3:-4302057 | None:intergenic |
| AATGCACGAAATGGAGAAGA+TGG | 0.544624 | 4.3:-4302113 | None:intergenic |
| TCCGTTAAAGCAGAAACCCT+AGG | 0.546122 | 4.3:+4302179 | MS.gene55826:CDS |
| CCGTCAATAGTGTTTGCTCA+AGG | 0.548980 | 4.3:-4303971 | None:intergenic |
| CGTCAATAGTGTTTGCTCAA+GGG | 0.562059 | 4.3:-4303970 | None:intergenic |
| GAAGAACCGCAATGTCCACC+TGG | 0.563779 | 4.3:+4302290 | MS.gene55826:CDS |
| GTTTCGTACTGTCTGAGTCC+AGG | 0.567223 | 4.3:-4302308 | None:intergenic |
| CGAAATGGAGAAGATGGCTG+AGG | 0.594512 | 4.3:-4302107 | None:intergenic |
| ACCCGGTTACTCCTGGAACC+GGG | 0.601404 | 4.3:+4302246 | MS.gene55826:CDS |
| ACCCGGTTCCAGGAGTAACC+GGG | 0.603784 | 4.3:-4302247 | None:intergenic |
| GATGCCGTCCATATACGTGT+TGG | 0.610520 | 4.3:-4303904 | None:intergenic |
| GAAAGAACCAGAGAAGCCTA+GGG | 0.615293 | 4.3:-4302195 | None:intergenic |
| CTGAGTCCAGGTGGACATTG+CGG | 0.619818 | 4.3:-4302296 | None:intergenic |
| TCGTGAAGTAGGTGAATAGG+AGG | 0.634881 | 4.3:-4303929 | None:intergenic |
| CAATAGTGTTTGCTCAAGGG+CGG | 0.640418 | 4.3:-4303967 | None:intergenic |
| GAAACCAACACGTATATGGA+CGG | 0.655460 | 4.3:+4303900 | MS.gene55826:CDS |
| TGGAGGTGGCATGTATGTAG+AGG | 0.659352 | 4.3:+4303818 | MS.gene55826:CDS |
| TTTAAGGCCTGACATGTCTG+AGG | 0.660772 | 4.3:+4302340 | MS.gene55826:CDS |
| TGCACTCACCCAGAAGTACG+AGG | 0.696215 | 4.3:+4302373 | MS.gene55826:CDS |
| TCGTACTGTCTGAGTCCAGG+TGG | 0.727253 | 4.3:-4302305 | None:intergenic |
| ACTCACCCAGAAGTACGAGG+AGG | 0.791351 | 4.3:+4302376 | MS.gene55826:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATGAATTATATAAAG+AGG | - | chr4.3:4303570-4303589 | None:intergenic | 10.0% |
| !!! | GGATATTAATTTAACTTCAA+CGG | - | chr4.3:4303648-4303667 | None:intergenic | 20.0% |
| ! | AAAAAATAGAGAACAATGGA+AGG | - | chr4.3:4302983-4303002 | None:intergenic | 25.0% |
| ! | AAAAATAGAGAACAATGGAA+GGG | - | chr4.3:4302982-4303001 | None:intergenic | 25.0% |
| ! | AGCAATGACTTATTCAAATA+AGG | - | chr4.3:4302681-4302700 | None:intergenic | 25.0% |
| ! | ATCAATGCAATAACTTTAAG+CGG | - | chr4.3:4303278-4303297 | None:intergenic | 25.0% |
| ! | CACTTAGTTTATCATTCAAA+TGG | - | chr4.3:4302435-4302454 | None:intergenic | 25.0% |
| ! | GATTGCAATTCTAACAAATA+TGG | - | chr4.3:4302525-4302544 | None:intergenic | 25.0% |
| ! | GGATTAACTTAACAAACAAA+AGG | - | chr4.3:4302414-4302433 | None:intergenic | 25.0% |
| ! | TATATCATCTAAACGAAGTT+TGG | - | chr4.3:4303303-4303322 | None:intergenic | 25.0% |
| ! | TTATTCCAATGAGAAAAGAA+TGG | - | chr4.3:4303755-4303774 | None:intergenic | 25.0% |
| ! | TTATTGAGTGAAATCAATGT+GGG | + | chr4.3:4303433-4303452 | MS.gene55826:intron | 25.0% |
| ! | TTTATTGAGTGAAATCAATG+TGG | + | chr4.3:4303432-4303451 | MS.gene55826:intron | 25.0% |
| !!! | AAGTGTTTGTTTTGAAAGAA+TGG | - | chr4.3:4302630-4302649 | None:intergenic | 25.0% |
| AAAATAGAGAACAATGGAAG+GGG | - | chr4.3:4302981-4303000 | None:intergenic | 30.0% | |
| AGAAAAGAAGAAGATGAAAG+TGG | - | chr4.3:4302080-4302099 | None:intergenic | 30.0% | |
| AGTTAGAGTCAAATCAAACT+TGG | - | chr4.3:4303669-4303688 | None:intergenic | 30.0% | |
| ATGATAAACTAAGTGCTCTA+TGG | + | chr4.3:4302440-4302459 | MS.gene55826:intron | 30.0% | |
| CAAGCTTCAAAATCAGAAAA+AGG | + | chr4.3:4304015-4304034 | MS.gene55826:CDS | 30.0% | |
| GAACTCAAAAATTGTATTGG+AGG | - | chr4.3:4302904-4302923 | None:intergenic | 30.0% | |
| GTGGAAAAAATAGAGAACAA+TGG | - | chr4.3:4302987-4303006 | None:intergenic | 30.0% | |
| GTTCACAATTGTGATTCTTA+AGG | + | chr4.3:4303600-4303619 | MS.gene55826:intron | 30.0% | |
| TATTCAAATAAGGTCGCAAA+GGG | - | chr4.3:4302671-4302690 | None:intergenic | 30.0% | |
| TCAAAAATTGTATTGGAGGA+GGG | - | chr4.3:4302900-4302919 | None:intergenic | 30.0% | |
| TGGAATTGAATTGAGTAAAG+AGG | - | chr4.3:4302060-4302079 | None:intergenic | 30.0% | |
| TGGGAACTCAAAAATTGTAT+TGG | - | chr4.3:4302907-4302926 | None:intergenic | 30.0% | |
| TTATTCAAATAAGGTCGCAA+AGG | - | chr4.3:4302672-4302691 | None:intergenic | 30.0% | |
| ! | ATTTTGTTCTACGAGACTTA+TGG | + | chr4.3:4303233-4303252 | MS.gene55826:intron | 30.0% |
| ! | CTATACCATTCTTTTCTCAT+TGG | + | chr4.3:4303747-4303766 | MS.gene55826:intron | 30.0% |
| ! | TATGTAGAGGTTTTTAACAG+AGG | + | chr4.3:4303831-4303850 | MS.gene55826:CDS | 30.0% |
| !! | ACGAAACTATGGTTGTTTTA+AGG | + | chr4.3:4302324-4302343 | MS.gene55826:CDS | 30.0% |
| !!! | GTTTGTTTTGAAAGAATGGA+GGG | - | chr4.3:4302626-4302645 | None:intergenic | 30.0% |
| !!! | TGATTTTGAAGCTTGTTGAT+CGG | - | chr4.3:4304010-4304029 | None:intergenic | 30.0% |
| !!! | TGTTTGTTTTGAAAGAATGG+AGG | - | chr4.3:4302627-4302646 | None:intergenic | 30.0% |
| AATAAGTCATTGCTCTGCTT+TGG | + | chr4.3:4302687-4302706 | MS.gene55826:intron | 35.0% | |
| ATCCAGAAGAAAAACAAGGA+AGG | + | chr4.3:4303876-4303895 | MS.gene55826:CDS | 35.0% | |
| ATGGGAAATATAGGGGAAAA+TGG | + | chr4.3:4302737-4302756 | MS.gene55826:intron | 35.0% | |
| ATTCAAATAAGGTCGCAAAG+GGG | - | chr4.3:4302670-4302689 | None:intergenic | 35.0% | |
| CTCAAAAATTGTATTGGAGG+AGG | - | chr4.3:4302901-4302920 | None:intergenic | 35.0% | |
| CTGCACAAAGGAAAATCATT+AGG | - | chr4.3:4303787-4303806 | None:intergenic | 35.0% | |
| TAGCATCCAGAAGAAAAACA+AGG | + | chr4.3:4303872-4303891 | MS.gene55826:CDS | 35.0% | |
| ! | CTAGCACTCACTCTTTTATT+GGG | - | chr4.3:4303437-4303418 | None:intergenic | 35.0% |
| ! | TCTAGCACTCACTCTTTTAT+TGG | - | chr4.3:4303436-4303417 | None:intergenic | 35.0% |
| ! | TCTTTCTTTGAAGGTGGATT+TGG | + | chr4.3:4302212-4302231 | MS.gene55826:CDS | 35.0% |
| ! | TGAAAGTGGGAAATTGATTC+AGG | - | chr4.3:4302140-4302159 | None:intergenic | 35.0% |
| !! | ATTTTGGGGATGGGAAATAT+AGG | + | chr4.3:4302728-4302747 | MS.gene55826:intron | 35.0% |
| !! | TTCTCTGGTTCTTTCTTTGA+AGG | + | chr4.3:4302203-4302222 | MS.gene55826:CDS | 35.0% |
| !! | TTTTGGGGATGGGAAATATA+GGG | + | chr4.3:4302729-4302748 | MS.gene55826:intron | 35.0% |
| !!! | GAGGGTTTTGGAAAAAAGAA+AGG | - | chr4.3:4303015-4303034 | None:intergenic | 35.0% |
| !!! | TTTTTGAGTTCCCACAAATG+AGG | + | chr4.3:4302913-4302932 | MS.gene55826:intron | 35.0% |
| AAACTCGCAAACAAAGCCTA+GGG | + | chr4.3:4303051-4303070 | MS.gene55826:intron | 40.0% | |
| AACAAAACCCTCCTCATTTG+TGG | - | chr4.3:4302927-4302946 | None:intergenic | 40.0% | |
| AATGCACGAAATGGAGAAGA+TGG | - | chr4.3:4302116-4302135 | None:intergenic | 40.0% | |
| ACAAAACCCTCCTCATTTGT+GGG | - | chr4.3:4302926-4302945 | None:intergenic | 40.0% | |
| ACAAAGCCTAGGGAAAAGAA+TGG | + | chr4.3:4303061-4303080 | MS.gene55826:intron | 40.0% | |
| ACTCAGACAGTACGAAACTA+TGG | + | chr4.3:4302313-4302332 | MS.gene55826:CDS | 40.0% | |
| AGGAGAAACCAACACGTATA+TGG | + | chr4.3:4303896-4303915 | MS.gene55826:CDS | 40.0% | |
| CCTTGAGCAAACACTATTGA+CGG | + | chr4.3:4303971-4303990 | MS.gene55826:CDS | 40.0% | |
| CGTCAATAGTGTTTGCTCAA+GGG | - | chr4.3:4303973-4303992 | None:intergenic | 40.0% | |
| GAAACCAACACGTATATGGA+CGG | + | chr4.3:4303900-4303919 | MS.gene55826:CDS | 40.0% | |
| GAAATGGAACCCACATAAAG+TGG | + | chr4.3:4303468-4303487 | MS.gene55826:intron | 40.0% | |
| GAACACTGATGCTAACTCTA+GGG | + | chr4.3:4303083-4303102 | MS.gene55826:intron | 40.0% | |
| GATTCAGGAAATGCACGAAA+TGG | - | chr4.3:4302125-4302144 | None:intergenic | 40.0% | |
| GGAAAAAAGAAAGGAGCAAG+TGG | - | chr4.3:4303006-4303025 | None:intergenic | 40.0% | |
| TATGACCCACCACTTTATGT+GGG | - | chr4.3:4303480-4303499 | None:intergenic | 40.0% | |
| TTCTGGATGCTATATGCTAG+TGG | - | chr4.3:4303864-4303883 | None:intergenic | 40.0% | |
| TTTCCCACTTTCACCAAAAC+AGG | + | chr4.3:4302147-4302166 | MS.gene55826:CDS | 40.0% | |
| TTTGGGGATGGGAAATATAG+GGG | + | chr4.3:4302730-4302749 | MS.gene55826:intron | 40.0% | |
| ! | AGTGTTCCATTCTTTTCCCT+AGG | - | chr4.3:4303070-4303089 | None:intergenic | 40.0% |
| ! | ATTGTATTGGAGGAGGGTTT+TGG | - | chr4.3:4302894-4302913 | None:intergenic | 40.0% |
| ! | CGGAAAAGTTGTTCCTGTTT+TGG | - | chr4.3:4302163-4302182 | None:intergenic | 40.0% |
| ! | CTTTGAAGGTGGATTTGGTT+CGG | + | chr4.3:4302217-4302236 | MS.gene55826:CDS | 40.0% |
| ! | TTGTATTGGAGGAGGGTTTT+GGG | - | chr4.3:4302893-4302912 | None:intergenic | 40.0% |
| ! | TTTGAAGGTGGATTTGGTTC+GGG | + | chr4.3:4302218-4302237 | MS.gene55826:CDS | 40.0% |
| !! | GCTTGATGATGATGATGAGT+AGG | + | chr4.3:4302473-4302492 | MS.gene55826:intron | 40.0% |
| !! | TCTGGTTCTTTCTTTGAAGG+TGG | + | chr4.3:4302206-4302225 | MS.gene55826:CDS | 40.0% |
| !!! | CTCCTTCCTTGTTTTTCTTC+TGG | - | chr4.3:4303881-4303900 | None:intergenic | 40.0% |
| !!! | GTTCCTGTTTTGGTGAAAGT+GGG | - | chr4.3:4302153-4302172 | None:intergenic | 40.0% |
| !!! | TGTTCCTGTTTTGGTGAAAG+TGG | - | chr4.3:4302154-4302173 | None:intergenic | 40.0% |
| AAGTCATTGCTCTGCTTTGG+AGG | + | chr4.3:4302690-4302709 | MS.gene55826:intron | 45.0% | |
| AGAAAGAACCAGAGAAGCCT+AGG | - | chr4.3:4302199-4302218 | None:intergenic | 45.0% | |
| AGCAACAAGAAGCTGCACAA+AGG | - | chr4.3:4303799-4303818 | None:intergenic | 45.0% | |
| ATAGAGAACAATGGAAGGGG+AGG | - | chr4.3:4302978-4302997 | None:intergenic | 45.0% | |
| ATGGAACCCACATAAAGTGG+TGG | + | chr4.3:4303471-4303490 | MS.gene55826:intron | 45.0% | |
| ATTTGACCTCCTCGTACTTC+TGG | - | chr4.3:4302385-4302404 | None:intergenic | 45.0% | |
| CAAACTCGCAAACAAAGCCT+AGG | + | chr4.3:4303050-4303069 | MS.gene55826:intron | 45.0% | |
| CAATAGTGTTTGCTCAAGGG+CGG | - | chr4.3:4303970-4303989 | None:intergenic | 45.0% | |
| CCGTCAATAGTGTTTGCTCA+AGG | - | chr4.3:4303974-4303993 | None:intergenic | 45.0% | |
| GAAAGAACCAGAGAAGCCTA+GGG | - | chr4.3:4302198-4302217 | None:intergenic | 45.0% | |
| GCCTAGGGTTTCTGCTTTAA+CGG | - | chr4.3:4302183-4302202 | None:intergenic | 45.0% | |
| GCTTCGTGAAGTAGGTGAAT+AGG | - | chr4.3:4303935-4303954 | None:intergenic | 45.0% | |
| GGAACACTGATGCTAACTCT+AGG | + | chr4.3:4303082-4303101 | MS.gene55826:intron | 45.0% | |
| GGGTTCCATTTCCAAAGTGT+AGG | - | chr4.3:4303460-4303479 | None:intergenic | 45.0% | |
| GTATGACCCACCACTTTATG+TGG | - | chr4.3:4303481-4303500 | None:intergenic | 45.0% | |
| TAGAGAACAATGGAAGGGGA+GGG | - | chr4.3:4302977-4302996 | None:intergenic | 45.0% | |
| TCAATGTGGGACCTACACTT+TGG | + | chr4.3:4303446-4303465 | MS.gene55826:intron | 45.0% | |
| TCCGTTAAAGCAGAAACCCT+AGG | + | chr4.3:4302179-4302198 | MS.gene55826:CDS | 45.0% | |
| TCGTGAAGTAGGTGAATAGG+AGG | - | chr4.3:4303932-4303951 | None:intergenic | 45.0% | |
| TGAAAGAATGGAGGGAGACA+AGG | - | chr4.3:4302618-4302637 | None:intergenic | 45.0% | |
| TGAGTTCCCACAAATGAGGA+GGG | + | chr4.3:4302917-4302936 | MS.gene55826:intron | 45.0% | |
| TGGAACCCACATAAAGTGGT+GGG | + | chr4.3:4303472-4303491 | MS.gene55826:intron | 45.0% | |
| TTGAGTTCCCACAAATGAGG+AGG | + | chr4.3:4302916-4302935 | MS.gene55826:intron | 45.0% | |
| TTTGACCTCCTCGTACTTCT+GGG | - | chr4.3:4302384-4302403 | None:intergenic | 45.0% | |
| TTTGCGAGTTTGGAGGGAAA+GGG | - | chr4.3:4303042-4303061 | None:intergenic | 45.0% | |
| TTTGTGCAGCTTCTTGTTGC+TGG | + | chr4.3:4303798-4303817 | MS.gene55826:intron | 45.0% | |
| ! | AGTCATTGCTCTGCTTTGGA+GGG | + | chr4.3:4302691-4302710 | MS.gene55826:intron | 45.0% |
| ! | TGGGACCTACACTTTGGAAA+TGG | + | chr4.3:4303452-4303471 | MS.gene55826:intron | 45.0% |
| ! | TTTAAGGCCTGACATGTCTG+AGG | + | chr4.3:4302340-4302359 | MS.gene55826:CDS | 45.0% |
| !! | CTAGGCTTTGTTTGCGAGTT+TGG | - | chr4.3:4303052-4303071 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | - | chr4.3:4303048-4303067 | None:intergenic | 45.0% |
| !!! | AGGAGGGTTTTGGGATGTTT+TGG | - | chr4.3:4302884-4302903 | None:intergenic | 45.0% |
| !!! | AGGGTTTTGGGATGTTTTGG+AGG | - | chr4.3:4302881-4302900 | None:intergenic | 45.0% |
| !!! | GGGTTTTGGGATGTTTTGGA+GGG | - | chr4.3:4302880-4302899 | None:intergenic | 45.0% |
| AATGGAAGGGGAGGGATTTG+GGG | - | chr4.3:4302969-4302988 | None:intergenic | 50.0% | |
| ACAATGGAAGGGGAGGGATT+TGG | - | chr4.3:4302971-4302990 | None:intergenic | 50.0% | |
| CAATGGAAGGGGAGGGATTT+GGG | - | chr4.3:4302970-4302989 | None:intergenic | 50.0% | |
| CGAAATGGAGAAGATGGCTG+AGG | - | chr4.3:4302110-4302129 | None:intergenic | 50.0% | |
| GATGCCGTCCATATACGTGT+TGG | - | chr4.3:4303907-4303926 | None:intergenic | 50.0% | |
| GTTTCGTACTGTCTGAGTCC+AGG | - | chr4.3:4302311-4302330 | None:intergenic | 50.0% | |
| GTTTGCGAGTTTGGAGGGAA+AGG | - | chr4.3:4303043-4303062 | None:intergenic | 50.0% | |
| TGGAGGTGGCATGTATGTAG+AGG | + | chr4.3:4303818-4303837 | MS.gene55826:CDS | 50.0% | |
| TGTTTGCTCAAGGGCGGTTA+TGG | - | chr4.3:4303964-4303983 | None:intergenic | 50.0% | |
| !! | ATTTGGTTCGGGTGATGACC+CGG | + | chr4.3:4302229-4302248 | MS.gene55826:CDS | 50.0% |
| !! | GAAGGGAGGATTTTGGGGAT+GGG | + | chr4.3:4302719-4302738 | MS.gene55826:intron | 50.0% |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | - | chr4.3:4303049-4303068 | None:intergenic | 50.0% |
| !! | GTCATTGCTCTGCTTTGGAG+GGG | + | chr4.3:4302692-4302711 | MS.gene55826:intron | 50.0% |
| AACCCGGTTCCAGGAGTAAC+CGG | - | chr4.3:4302251-4302270 | None:intergenic | 55.0% | |
| ATGGAAGGGGAGGGATTTGG+GGG | - | chr4.3:4302968-4302987 | None:intergenic | 55.0% | |
| CAGCTTCTTGTTGCTGGAGG+TGG | + | chr4.3:4303804-4303823 | MS.gene55826:intron | 55.0% | |
| CGAGTTTGGAGGGAAAGGGA+GGG | - | chr4.3:4303038-4303057 | None:intergenic | 55.0% | |
| CGCTCATCCTCAGACATGTC+AGG | - | chr4.3:4302350-4302369 | None:intergenic | 55.0% | |
| CTCTTCCACAGCAGTGAACC+CGG | - | chr4.3:4302267-4302286 | None:intergenic | 55.0% | |
| CTGAGTCCAGGTGGACATTG+CGG | - | chr4.3:4302299-4302318 | None:intergenic | 55.0% | |
| GAAGAACCGCAATGTCCACC+TGG | + | chr4.3:4302290-4302309 | MS.gene55826:CDS | 55.0% | |
| GAGTTTGGAGGGAAAGGGAG+GGG | - | chr4.3:4303037-4303056 | None:intergenic | 55.0% | |
| GCAGAAACCCTAGGCTTCTC+TGG | + | chr4.3:4302188-4302207 | MS.gene55826:CDS | 55.0% | |
| GGACTCAGGCTTCGTGAAGT+AGG | - | chr4.3:4303943-4303962 | None:intergenic | 55.0% | |
| GTGCAGCTTCTTGTTGCTGG+AGG | + | chr4.3:4303801-4303820 | MS.gene55826:intron | 55.0% | |
| TCAAGGGCGGTTATGGACTC+AGG | - | chr4.3:4303957-4303976 | None:intergenic | 55.0% | |
| TCGTACTGTCTGAGTCCAGG+TGG | - | chr4.3:4302308-4302327 | None:intergenic | 55.0% | |
| ! | ACTCACCCAGAAGTACGAGG+AGG | + | chr4.3:4302376-4302395 | MS.gene55826:CDS | 55.0% |
| ! | GAGGGGAAGGGAGGATTTTG+GGG | + | chr4.3:4302714-4302733 | MS.gene55826:intron | 55.0% |
| ! | GGAGGGGAAGGGAGGATTTT+GGG | + | chr4.3:4302713-4302732 | MS.gene55826:intron | 55.0% |
| ! | TGCACTCACCCAGAAGTACG+AGG | + | chr4.3:4302373-4302392 | MS.gene55826:CDS | 55.0% |
| !! | ATTGCTCTGCTTTGGAGGGG+AGG | + | chr4.3:4302695-4302714 | MS.gene55826:intron | 55.0% |
| !! | GGAAGGGAGGATTTTGGGGA+TGG | + | chr4.3:4302718-4302737 | MS.gene55826:intron | 55.0% |
| !! | TTGCTCTGCTTTGGAGGGGA+GGG | + | chr4.3:4302696-4302715 | MS.gene55826:intron | 55.0% |
| ACAGCAGTGAACCCGGTTCC+AGG | - | chr4.3:4302260-4302279 | None:intergenic | 60.0% | |
| ACCCGGTTACTCCTGGAACC+GGG | + | chr4.3:4302246-4302265 | MS.gene55826:CDS | 60.0% | |
| ACCCGGTTCCAGGAGTAACC+GGG | - | chr4.3:4302250-4302269 | None:intergenic | 60.0% | |
| GACCCGGTTACTCCTGGAAC+CGG | + | chr4.3:4302245-4302264 | MS.gene55826:CDS | 60.0% | |
| GCGAGTTTGGAGGGAAAGGG+AGG | - | chr4.3:4303039-4303058 | None:intergenic | 60.0% | |
| GGTGATGACCCGGTTACTCC+TGG | + | chr4.3:4302239-4302258 | MS.gene55826:CDS | 60.0% | |
| TGGAACCGGGTTCACTGCTG+TGG | + | chr4.3:4302259-4302278 | MS.gene55826:CDS | 60.0% | |
| TGGAAGGGGAGGGATTTGGG+GGG | - | chr4.3:4302967-4302986 | None:intergenic | 60.0% | |
| TTGGAGGGAAAGGGAGGGGA+GGG | - | chr4.3:4303033-4303052 | None:intergenic | 60.0% | |
| TTTGGAGGGAAAGGGAGGGG+AGG | - | chr4.3:4303034-4303053 | None:intergenic | 60.0% | |
| ! | GGAAAGGGAGGGGAGGGTTT+TGG | - | chr4.3:4303027-4303046 | None:intergenic | 60.0% |
| ! | GGGAGGGGAAGGGAGGATTT+TGG | + | chr4.3:4302712-4302731 | MS.gene55826:intron | 60.0% |
| !! | TGCTCTGCTTTGGAGGGGAG+GGG | + | chr4.3:4302697-4302716 | MS.gene55826:intron | 60.0% |
| !! | TGCTTTGGAGGGGAGGGGAA+GGG | + | chr4.3:4302702-4302721 | MS.gene55826:intron | 60.0% |
| TTTGGAGGGGAGGGGAAGGG+AGG | + | chr4.3:4302705-4302724 | MS.gene55826:intron | 65.0% | |
| !! | CTGCTTTGGAGGGGAGGGGA+AGG | + | chr4.3:4302701-4302720 | MS.gene55826:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 4302050 | 4304046 | 4302050 | ID=MS.gene55826 |
| chr4.3 | mRNA | 4302050 | 4304046 | 4302050 | ID=MS.gene55826.t1;Parent=MS.gene55826 |
| chr4.3 | exon | 4302050 | 4302397 | 4302050 | ID=MS.gene55826.t1.exon1;Parent=MS.gene55826.t1 |
| chr4.3 | CDS | 4302050 | 4302397 | 4302050 | ID=cds.MS.gene55826.t1;Parent=MS.gene55826.t1 |
| chr4.3 | exon | 4303807 | 4304046 | 4303807 | ID=MS.gene55826.t1.exon2;Parent=MS.gene55826.t1 |
| chr4.3 | CDS | 4303807 | 4304046 | 4303807 | ID=cds.MS.gene55826.t1;Parent=MS.gene55826.t1 |
| Gene Sequence |
| Protein sequence |
