Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55860.t1 | XP_003630609.1 | 99.6 | 974 | 4 | 0 | 1 | 974 | 1 | 974 | 0.00E+00 | 1897.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55860.t1 | Q9ZVW2 | 79.7 | 983 | 186 | 3 | 6 | 974 | 3 | 985 | 0.0e+00 | 1543.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55860.t1 | G7LIV7 | 99.6 | 974 | 4 | 0 | 1 | 974 | 1 | 974 | 0.0e+00 | 1897.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050885 | MS.gene55860 | 0.801676 | 8.05E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024073 | MS.gene55860 | PPI |
| MS.gene55860 | MS.gene033519 | PPI |
| MS.gene55860 | MS.gene001670 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55860.t1 | MTR_8g101340 | 99.589 | 974 | 4 | 0 | 1 | 974 | 1 | 974 | 0.0 | 2008 |
| MS.gene55860.t1 | MTR_5g069360 | 74.923 | 977 | 222 | 5 | 1 | 974 | 1 | 957 | 0.0 | 1457 |
| MS.gene55860.t1 | MTR_7g080730 | 48.873 | 976 | 459 | 10 | 28 | 975 | 11 | 974 | 0.0 | 934 |
| MS.gene55860.t1 | MTR_3g462290 | 32.702 | 1003 | 551 | 25 | 76 | 975 | 341 | 1322 | 1.48e-151 | 484 |
| MS.gene55860.t1 | MTR_5g036660 | 33.272 | 541 | 304 | 12 | 76 | 566 | 138 | 671 | 5.24e-72 | 260 |
| MS.gene55860.t1 | MTR_3g025300 | 26.241 | 423 | 231 | 11 | 98 | 487 | 453 | 827 | 9.48e-25 | 112 |
| MS.gene55860.t1 | MTR_3g025300 | 30.688 | 189 | 104 | 6 | 336 | 513 | 1515 | 1687 | 9.98e-15 | 79.7 |
| MS.gene55860.t1 | MTR_3g025300 | 26.241 | 423 | 231 | 11 | 98 | 487 | 453 | 827 | 1.00e-24 | 112 |
| MS.gene55860.t1 | MTR_3g025300 | 29.949 | 197 | 111 | 6 | 336 | 521 | 1515 | 1695 | 1.09e-14 | 79.7 |
| MS.gene55860.t1 | MTR_1g008600 | 24.265 | 544 | 306 | 21 | 76 | 575 | 521 | 1002 | 4.32e-24 | 110 |
| MS.gene55860.t1 | MTR_7g075463 | 24.256 | 437 | 243 | 15 | 93 | 487 | 35 | 425 | 9.72e-20 | 95.9 |
| MS.gene55860.t1 | MTR_7g075463 | 24.256 | 437 | 243 | 15 | 93 | 487 | 35 | 425 | 1.07e-19 | 95.5 |
| MS.gene55860.t1 | MTR_7g075463 | 24.256 | 437 | 243 | 15 | 93 | 487 | 35 | 425 | 1.71e-19 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55860.t1 | AT2G06990 | 79.858 | 983 | 184 | 3 | 6 | 974 | 3 | 985 | 0.0 | 1616 |
| MS.gene55860.t1 | AT1G59760 | 48.699 | 961 | 444 | 14 | 45 | 975 | 38 | 979 | 0.0 | 902 |
| MS.gene55860.t1 | AT3G46960 | 35.030 | 1002 | 530 | 22 | 76 | 975 | 225 | 1207 | 0.0 | 567 |
| MS.gene55860.t1 | AT3G46960 | 35.030 | 1002 | 530 | 22 | 76 | 975 | 216 | 1198 | 0.0 | 566 |
| MS.gene55860.t1 | AT3G46960 | 35.030 | 1002 | 530 | 22 | 76 | 975 | 353 | 1335 | 0.0 | 565 |
| MS.gene55860.t1 | AT1G70070 | 35.611 | 483 | 261 | 11 | 80 | 524 | 151 | 621 | 4.22e-75 | 270 |
| MS.gene55860.t1 | AT4G32700 | 26.829 | 451 | 247 | 14 | 76 | 487 | 512 | 918 | 7.51e-27 | 119 |
| MS.gene55860.t1 | AT5G61140 | 25.597 | 461 | 252 | 16 | 98 | 521 | 523 | 929 | 1.37e-21 | 102 |
| MS.gene55860.t1 | AT5G61140 | 30.978 | 184 | 110 | 6 | 336 | 513 | 1574 | 1746 | 8.16e-15 | 80.1 |
| MS.gene55860.t1 | AT5G61140 | 25.761 | 427 | 228 | 15 | 98 | 487 | 523 | 897 | 1.76e-21 | 102 |
| MS.gene55860.t1 | AT5G61140 | 30.978 | 184 | 110 | 6 | 336 | 513 | 1585 | 1757 | 9.19e-15 | 80.1 |
Find 227 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTACCTGATGTGGGAAAA+AGG | 0.216911 | 4.3:+3836347 | MS.gene55860:CDS |
| GTCACCGAATTAATGTTTAA+TGG | 0.222685 | 4.3:+3838487 | MS.gene55860:CDS |
| GGAAAAGGTGGTTCTGCTTC+TGG | 0.233820 | 4.3:+3833117 | MS.gene55860:CDS |
| TGGTGGGAGTGGATTGTATT+TGG | 0.234213 | 4.3:+3832984 | MS.gene55860:CDS |
| CAGAACCCTTTGTCTGCATT+GGG | 0.241586 | 4.3:+3841226 | MS.gene55860:intron |
| CAGACTATTCGGAATATTCT+TGG | 0.264291 | 4.3:+3840862 | MS.gene55860:intron |
| GTTGATTCCTGCTCCATTGC+TGG | 0.266574 | 4.3:-3832196 | None:intergenic |
| GGAATATCATAAGCTGAAAT+TGG | 0.270577 | 4.3:+3836537 | MS.gene55860:CDS |
| CTCCTTTAGTTAGTACATTC+AGG | 0.276561 | 4.3:+3836136 | MS.gene55860:CDS |
| GGGCGGGGTGGGCATGGTTT+TGG | 0.279061 | 4.3:-3837088 | None:intergenic |
| GGAATTGCTGTTCATCATTC+TGG | 0.280658 | 4.3:+3835085 | MS.gene55860:CDS |
| AGAAAATAAAGAATCATTTC+AGG | 0.301615 | 4.3:-3836604 | None:intergenic |
| TGCTCAGATGATTTCTCTAT+TGG | 0.304109 | 4.3:-3838666 | None:intergenic |
| TAACCTCAAAGACATGGTTT+TGG | 0.327231 | 4.3:+3836104 | MS.gene55860:CDS |
| TTACTAAGGGCAGAGATTAA+TGG | 0.328246 | 4.3:-3837263 | None:intergenic |
| TGTTCTTCTGCCAGACTATT+CGG | 0.329881 | 4.3:+3840851 | MS.gene55860:intron |
| CTTTCTCTCCAGGGCGGGGT+GGG | 0.340851 | 4.3:-3837099 | None:intergenic |
| AAGCATACTCCTTGCTGTTC+AGG | 0.343693 | 4.3:+3837334 | MS.gene55860:CDS |
| GGTGGGACAGATTGGGGCTG+GGG | 0.343868 | 4.3:+3836971 | MS.gene55860:CDS |
| TTCGTTGAGGTGTAATTGAT+TGG | 0.352188 | 4.3:-3832337 | None:intergenic |
| GAGATTAATGGTAATTGAAC+AGG | 0.353778 | 4.3:-3837251 | None:intergenic |
| TCTTCCTGTCATCAAAGAAT+TGG | 0.354834 | 4.3:+3835111 | MS.gene55860:CDS |
| GGTGATAGTCACCGTTATAT+TGG | 0.358611 | 4.3:+3835339 | MS.gene55860:CDS |
| TCTTCGAGGGGAGTATCATT+AGG | 0.360737 | 4.3:+3839951 | MS.gene55860:CDS |
| GGTAAATCGAATGGAAGATT+TGG | 0.365565 | 4.3:+3833096 | MS.gene55860:CDS |
| GCTTCCAAGGGCCGGAGATC+AGG | 0.372035 | 4.3:-3837305 | None:intergenic |
| GATAGAGCACGAATGCAAAT+TGG | 0.376072 | 4.3:+3838834 | MS.gene55860:intron |
| TCGGCGGTGGACACCGGTTC+CGG | 0.376643 | 4.3:-3832241 | None:intergenic |
| TCTCCAGGGCGGGGTGGGCA+TGG | 0.379010 | 4.3:-3837094 | None:intergenic |
| ATCGTGAAAGGGGTGTTGTA+TGG | 0.379808 | 4.3:+3832791 | MS.gene55860:CDS |
| CATATATCCTTAGTTTACTA+AGG | 0.380472 | 4.3:-3837277 | None:intergenic |
| TTCACCATTAAACATTAATT+CGG | 0.382558 | 4.3:-3838491 | None:intergenic |
| TGCATTTCACCTTTCTCTCC+AGG | 0.383547 | 4.3:-3837109 | None:intergenic |
| TACTCTCTGTTTATCTCTAA+AGG | 0.385174 | 4.3:-3832548 | None:intergenic |
| GCAATTGATACTTGTTGAAA+TGG | 0.388936 | 4.3:-3832439 | None:intergenic |
| ACTCCTTGCTGTTCAGGAGC+TGG | 0.390356 | 4.3:+3837340 | MS.gene55860:CDS |
| TCAGAACCCTTTGTCTGCAT+TGG | 0.391837 | 4.3:+3841225 | MS.gene55860:intron |
| AACAGTAAGGCCATTCTTGA+TGG | 0.396227 | 4.3:+3838885 | MS.gene55860:CDS |
| TTCACCTTTCTCTCCAGGGC+GGG | 0.396948 | 4.3:-3837104 | None:intergenic |
| ACCTTCACAGGGTTAAGCTT+TGG | 0.397852 | 4.3:-3837386 | None:intergenic |
| TAAGAGAAGGTGGGACAGAT+TGG | 0.401630 | 4.3:+3836963 | MS.gene55860:CDS |
| AAAACGAAATGAACCGGAAC+CGG | 0.410090 | 4.3:+3832228 | MS.gene55860:CDS |
| CTTCAATTCCCAAGAGGAAA+AGG | 0.412893 | 4.3:+3834964 | MS.gene55860:CDS |
| CGGAATATTCTTGGTTACTC+TGG | 0.413283 | 4.3:+3840871 | MS.gene55860:CDS |
| AAGAGAAGGTGGGACAGATT+GGG | 0.417328 | 4.3:+3836964 | MS.gene55860:CDS |
| GTCGAATGCCACAGAGTTTG+CGG | 0.419327 | 4.3:+3832873 | MS.gene55860:CDS |
| TCACGTGTTCCGCAGTGAAC+TGG | 0.420579 | 4.3:-3836203 | None:intergenic |
| GTTTGATCATCCTATGCATA+AGG | 0.424049 | 4.3:+3837813 | MS.gene55860:CDS |
| TGATTACTCAAAGCTTTCAA+TGG | 0.430787 | 4.3:-3832583 | None:intergenic |
| TATGCTTTGCCGAGCTTCCA+AGG | 0.432464 | 4.3:-3837318 | None:intergenic |
| TGCAATGGGTTTAAATATGC+CGG | 0.437253 | 4.3:+3835278 | MS.gene55860:CDS |
| CCGCCGTCGGCGGTGGACAC+CGG | 0.439717 | 4.3:-3832247 | None:intergenic |
| AGTCAGGAATTTACAGATGT+AGG | 0.442488 | 4.3:+3832622 | MS.gene55860:CDS |
| TCACCTTTCTCTCCAGGGCG+GGG | 0.444665 | 4.3:-3837103 | None:intergenic |
| TGCAGTTGGAGAAGCTGACT+TGG | 0.449759 | 4.3:+3840755 | MS.gene55860:CDS |
| TCATCAATTTCAATATGAAA+AGG | 0.453667 | 4.3:+3836239 | MS.gene55860:CDS |
| ATCAGTGTAAACTACGTGAC+AGG | 0.455162 | 4.3:-3832923 | None:intergenic |
| ACCTCCTGATCTCCGGCCCT+TGG | 0.455173 | 4.3:+3837301 | MS.gene55860:CDS |
| AGTGTCGCCGCCGTCGGCGG+TGG | 0.455307 | 4.3:-3832254 | None:intergenic |
| TGATGGATGTAATATACTCT+TGG | 0.455877 | 4.3:+3838902 | MS.gene55860:CDS |
| CCTTTCTCTCCAGGGCGGGG+TGG | 0.456496 | 4.3:-3837100 | None:intergenic |
| CTTCGAGGGGAGTATCATTA+GGG | 0.456913 | 4.3:+3839952 | MS.gene55860:CDS |
| TGATGAAATTCATTATATGA+AGG | 0.458021 | 4.3:+3832768 | MS.gene55860:CDS |
| GTCAGGAATTTACAGATGTA+GGG | 0.458805 | 4.3:+3832623 | MS.gene55860:CDS |
| TACCCAAAACCATGTCTTTG+AGG | 0.459038 | 4.3:-3836107 | None:intergenic |
| ATATTCTTGGTTACTCTGGC+TGG | 0.460434 | 4.3:+3840875 | MS.gene55860:CDS |
| TTTACCACCTGCTATTAAGA+TGG | 0.462609 | 4.3:+3832831 | MS.gene55860:CDS |
| ATCTCCGGCCCTTGGAAGCT+CGG | 0.463489 | 4.3:+3837309 | MS.gene55860:CDS |
| CTTGGTTACTCTGGCTGGTG+GGG | 0.465973 | 4.3:+3840880 | MS.gene55860:CDS |
| GTAGCCTTGCTTGATGCTGC+AGG | 0.467215 | 4.3:+3836391 | MS.gene55860:CDS |
| TCTTGGTTACTCTGGCTGGT+GGG | 0.468577 | 4.3:+3840879 | MS.gene55860:CDS |
| AGGTGGGACAGATTGGGGCT+GGG | 0.468655 | 4.3:+3836970 | MS.gene55860:CDS |
| TCAACCAATTCTTTGATGAC+AGG | 0.470906 | 4.3:-3835115 | None:intergenic |
| TTCTTGGTTACTCTGGCTGG+TGG | 0.471335 | 4.3:+3840878 | MS.gene55860:CDS |
| AAGGTGGGACAGATTGGGGC+TGG | 0.472672 | 4.3:+3836969 | MS.gene55860:CDS |
| TACAATCCACTCCCACCAAT+AGG | 0.473323 | 4.3:-3832979 | None:intergenic |
| CGTGCTGCTGCTGATGCAGT+TGG | 0.474550 | 4.3:+3840741 | MS.gene55860:CDS |
| AAACCATGCCCACCCCGCCC+TGG | 0.477422 | 4.3:+3837091 | MS.gene55860:CDS |
| CTCCTTGCTGTTCAGGAGCT+GGG | 0.479025 | 4.3:+3837341 | MS.gene55860:CDS |
| CCATGGTACCGTTGTGGAGA+GGG | 0.479305 | 4.3:-3832390 | None:intergenic |
| AGTCACCGTTATATTGGATC+TGG | 0.479637 | 4.3:+3835345 | MS.gene55860:CDS |
| CCACCCCGCCCTGGAGAGAA+AGG | 0.486232 | 4.3:+3837100 | MS.gene55860:CDS |
| GTATCATTAGGGCAGCTAGA+AGG | 0.486870 | 4.3:+3839963 | MS.gene55860:CDS |
| CTTTAGATGAGTGGAAGGGC+TGG | 0.488920 | 4.3:+3835475 | MS.gene55860:intron |
| AGCGAGTGAAAGCCTTCGAC+GGG | 0.494908 | 4.3:+3840794 | MS.gene55860:CDS |
| TTTGCCGAGCTTCCAAGGGC+CGG | 0.495193 | 4.3:-3837313 | None:intergenic |
| ACTCGGAAAACGAAATGAAC+CGG | 0.496216 | 4.3:+3832222 | MS.gene55860:CDS |
| GTCTCTGCTCACACCTCCGC+CGG | 0.496523 | 4.3:+3832490 | MS.gene55860:CDS |
| GGCAACATCAACTCGATAGC+AGG | 0.497538 | 4.3:-3835049 | None:intergenic |
| TCGTGAAAGGGGTGTTGTAT+GGG | 0.500015 | 4.3:+3832792 | MS.gene55860:CDS |
| TGGATCTGGTGAATATATAC+AGG | 0.502543 | 4.3:+3835359 | MS.gene55860:CDS |
| ACTCGATAGCAGGTAAGCTT+CGG | 0.502820 | 4.3:-3835039 | None:intergenic |
| TATCATAATGATTGATGAGC+AGG | 0.503248 | 4.3:+3835528 | MS.gene55860:CDS |
| ATAACAAGACATGTCGCATT+CGG | 0.504190 | 4.3:-3832673 | None:intergenic |
| ACTTTACTTCATTGTTCACC+TGG | 0.504730 | 4.3:+3837043 | MS.gene55860:CDS |
| TCTCTGCCCTTAGTAAACTA+AGG | 0.506371 | 4.3:+3837270 | MS.gene55860:CDS |
| TTTGTCTGCATTGGGGATTG+AGG | 0.509134 | 4.3:+3841234 | MS.gene55860:CDS |
| TGAAGAAGTGTCGCCGCCGT+CGG | 0.509169 | 4.3:-3832260 | None:intergenic |
| AAAGGTGGTTCTGCTTCTGG+TGG | 0.510116 | 4.3:+3833120 | MS.gene55860:CDS |
| TGATATATACAAGATTGTTA+AGG | 0.511551 | 4.3:+3833146 | MS.gene55860:CDS |
| TGAACTTGTCAATCAAATAG+AGG | 0.511641 | 4.3:+3837774 | MS.gene55860:CDS |
| GGTTACTCTGGCTGGTGGGG+CGG | 0.515553 | 4.3:+3840883 | MS.gene55860:CDS |
| CTATCACTTACCAGTCGACC+AGG | 0.516457 | 4.3:-3836631 | None:intergenic |
| GCAAGAGCCAGCAATGGAGC+AGG | 0.518743 | 4.3:+3832189 | MS.gene55860:CDS |
| GAAATATAGAGAATTGAGTC+AGG | 0.519365 | 4.3:+3832606 | MS.gene55860:CDS |
| TTATATGAAGGATCGTGAAA+GGG | 0.519649 | 4.3:+3832780 | MS.gene55860:CDS |
| TATATTACATCCATCAAGAA+TGG | 0.520179 | 4.3:-3838895 | None:intergenic |
| TTGGTATAAAACAACTTGCA+AGG | 0.521291 | 4.3:-3838647 | None:intergenic |
| TATATGTACCTCCTGATCTC+CGG | 0.521941 | 4.3:+3837294 | MS.gene55860:CDS |
| AATTCAGACCTTACCTGATG+TGG | 0.522375 | 4.3:+3836339 | MS.gene55860:intron |
| GTGTAGTTCAATTGAAAGGA+AGG | 0.523333 | 4.3:+3838428 | MS.gene55860:CDS |
| ACGAAAGACGAATCACTTCA+CGG | 0.527695 | 4.3:+3832355 | MS.gene55860:CDS |
| TCGAATGGAAGATTTGGAAA+AGG | 0.528518 | 4.3:+3833102 | MS.gene55860:CDS |
| CCGGTGTCCACCGCCGACGG+CGG | 0.528646 | 4.3:+3832247 | MS.gene55860:CDS |
| CATTACAAGAGAACCCGAAA+AGG | 0.528954 | 4.3:-3840941 | None:intergenic |
| TCAACTATATAACCGCCAAC+AGG | 0.529420 | 4.3:-3837019 | None:intergenic |
| AGCCTGAATGTACTAACTAA+AGG | 0.529528 | 4.3:-3836138 | None:intergenic |
| ATTCTTTGATGACAGGAAGA+AGG | 0.530033 | 4.3:-3835108 | None:intergenic |
| AAGGGTGTCTATGCTGGAGC+AGG | 0.530066 | 4.3:+3836366 | MS.gene55860:CDS |
| CTCTGTGGCATTCGACATAG+TGG | 0.530069 | 4.3:-3832866 | None:intergenic |
| ATTATATGAAGGATCGTGAA+AGG | 0.530275 | 4.3:+3832779 | MS.gene55860:CDS |
| CAGTGAACTGGCCTTCTGCT+CGG | 0.530427 | 4.3:-3836191 | None:intergenic |
| AAGGAATTGAGCGCATCGGA+TGG | 0.530889 | 4.3:-3840922 | None:intergenic |
| CAAATGACTGACATCTTCGA+GGG | 0.531212 | 4.3:+3839938 | MS.gene55860:CDS |
| CAGATTAAAGTAAGAGAAGG+TGG | 0.532868 | 4.3:+3836953 | MS.gene55860:intron |
| CTTGCTTGATGCTGCAGGGG+AGG | 0.536139 | 4.3:+3836396 | MS.gene55860:CDS |
| TACTGTCTCAGTAGCAAAGA+GGG | 0.536146 | 4.3:-3835167 | None:intergenic |
| GCATTTCACCTTTCTCTCCA+GGG | 0.541047 | 4.3:-3837108 | None:intergenic |
| GCAATTCCTCGCTGAAGAAG+TGG | 0.544503 | 4.3:-3835070 | None:intergenic |
| TCATGAAATTCAACAACTGA+AGG | 0.546269 | 4.3:+3837982 | MS.gene55860:CDS |
| TTTAGATGAGTGGAAGGGCT+GGG | 0.547075 | 4.3:+3835476 | MS.gene55860:intron |
| GGGAAGGGTGGTAAATCGAA+TGG | 0.547674 | 4.3:+3833087 | MS.gene55860:CDS |
| AGAACCCTTTGTCTGCATTG+GGG | 0.548794 | 4.3:+3841227 | MS.gene55860:intron |
| GATAGTGTAGTTCAATTGAA+AGG | 0.549226 | 4.3:+3838424 | MS.gene55860:CDS |
| TCGCGAGTCTTAAAGAAGCT+TGG | 0.549421 | 4.3:+3838388 | MS.gene55860:CDS |
| ATCGCCTGTGTCAATCAAGC+AGG | 0.550338 | 4.3:-3838455 | None:intergenic |
| CAAGGGCAGCAACTTGATGA+TGG | 0.552445 | 4.3:-3838629 | None:intergenic |
| GCCATGGTACCGTTGTGGAG+AGG | 0.553017 | 4.3:-3832391 | None:intergenic |
| TCAAATGACTGACATCTTCG+AGG | 0.556182 | 4.3:+3839937 | MS.gene55860:CDS |
| TCAATCCCCAATGCAGACAA+AGG | 0.557365 | 4.3:-3841232 | None:intergenic |
| CAATCCCCAATGCAGACAAA+GGG | 0.557415 | 4.3:-3841231 | None:intergenic |
| AATGTACTAACTAAAGGAGC+AGG | 0.560102 | 4.3:-3836132 | None:intergenic |
| AAGGTGGTTCTGCTTCTGGT+GGG | 0.560327 | 4.3:+3833121 | MS.gene55860:CDS |
| TGGATCAAGTGTGAAAGGAT+AGG | 0.560748 | 4.3:-3832419 | None:intergenic |
| GTTAAGCAGAAACTTGGTGA+AGG | 0.561016 | 4.3:+3833066 | MS.gene55860:CDS |
| AGTATGTCGAATCAACAGTA+AGG | 0.561577 | 4.3:+3838872 | MS.gene55860:CDS |
| GAACCGGTGTCCACCGCCGA+CGG | 0.562070 | 4.3:+3832244 | MS.gene55860:CDS |
| CAGCGAGTGAAAGCCTTCGA+CGG | 0.562359 | 4.3:+3840793 | MS.gene55860:CDS |
| TAGCCTTGCTTGATGCTGCA+GGG | 0.564277 | 4.3:+3836392 | MS.gene55860:CDS |
| ATGACTACGGAGATTCTTCG+TGG | 0.566120 | 4.3:+3832694 | MS.gene55860:CDS |
| AGAGAAGGTGGGACAGATTG+GGG | 0.569047 | 4.3:+3836965 | MS.gene55860:CDS |
| AATGGAAGATTTGGAAAAGG+TGG | 0.569254 | 4.3:+3833105 | MS.gene55860:CDS |
| GCAGAAACTTGGTGAAGGGA+AGG | 0.571285 | 4.3:+3833071 | MS.gene55860:CDS |
| TTAAGCAGAAACTTGGTGAA+GGG | 0.571445 | 4.3:+3833067 | MS.gene55860:CDS |
| TGTACCTTTAGATGAGTGGA+AGG | 0.572811 | 4.3:+3835470 | MS.gene55860:intron |
| CTTCGTGGAATGTTGTATCG+TGG | 0.573133 | 4.3:+3832709 | MS.gene55860:CDS |
| AATGTTGTTAAGAAACCTGT+TGG | 0.574141 | 4.3:+3837004 | MS.gene55860:CDS |
| CAGAAACTTGGTGAAGGGAA+GGG | 0.574536 | 4.3:+3833072 | MS.gene55860:CDS |
| GTTGTTAAGAAACCTGTTGG+CGG | 0.575282 | 4.3:+3837007 | MS.gene55860:CDS |
| AAGTGATTCGTCTTTCGTTG+AGG | 0.576556 | 4.3:-3832350 | None:intergenic |
| AGAAGTGTCGCCGCCGTCGG+CGG | 0.577944 | 4.3:-3832257 | None:intergenic |
| ACATAATGCTGCAACGGTGT+CGG | 0.578972 | 4.3:-3832952 | None:intergenic |
| TATTGTGTAGGCTGAAGTAT+CGG | 0.579161 | 4.3:+3836516 | MS.gene55860:intron |
| TTAAGCTTTGGAAGACCTTG+AGG | 0.579381 | 4.3:-3837374 | None:intergenic |
| AGGAATTGAGCGCATCGGAT+GGG | 0.579687 | 4.3:-3840921 | None:intergenic |
| CTCCCCTGCAGCATCAAGCA+AGG | 0.582351 | 4.3:-3836395 | None:intergenic |
| TATTCACTGCTGTTAAGAAG+TGG | 0.585998 | 4.3:+3835313 | MS.gene55860:CDS |
| ATATATCCTTAGTTTACTAA+GGG | 0.587989 | 4.3:-3837276 | None:intergenic |
| CCCTCTCCACAACGGTACCA+TGG | 0.588675 | 4.3:+3832390 | MS.gene55860:CDS |
| CTGTCTTGAAGCTGTTGTAG+AGG | 0.589916 | 4.3:-3838717 | None:intergenic |
| AGTGGAAGGGCTGGGCGTCG+TGG | 0.590542 | 4.3:+3835484 | MS.gene55860:CDS |
| TGTAATATACTCTTGGTCAA+AGG | 0.591936 | 4.3:+3838909 | MS.gene55860:CDS |
| AATTTGATGAGCCGAGCAGA+AGG | 0.592081 | 4.3:+3836180 | MS.gene55860:CDS |
| ATTCACCAGATCCAATATAA+CGG | 0.593476 | 4.3:-3835350 | None:intergenic |
| GCAGCCTGCTTGATTGACAC+AGG | 0.593822 | 4.3:+3838451 | MS.gene55860:CDS |
| TTGCAGATTAAAGTAAGAGA+AGG | 0.593993 | 4.3:+3836950 | MS.gene55860:intron |
| ATTCAGACCTTACCTGATGT+GGG | 0.593998 | 4.3:+3836340 | MS.gene55860:intron |
| TGGTATAAAACAACTTGCAA+GGG | 0.594056 | 4.3:-3838646 | None:intergenic |
| GGTACCGTTGTGGAGAGGGT+TGG | 0.594794 | 4.3:-3832386 | None:intergenic |
| AGAGCACGAATGCAAATTGG+AGG | 0.596817 | 4.3:+3838837 | MS.gene55860:CDS |
| ATGCTTTGCCGAGCTTCCAA+GGG | 0.600340 | 4.3:-3837317 | None:intergenic |
| ATTCACTGCTGTTAAGAAGT+GGG | 0.601230 | 4.3:+3835314 | MS.gene55860:CDS |
| CGAAAAGGAATTGAGCGCAT+CGG | 0.603703 | 4.3:-3840926 | None:intergenic |
| TCCAAAGCTTAACCCTGTGA+AGG | 0.603957 | 4.3:+3837385 | MS.gene55860:CDS |
| AGCCTTGCTTGATGCTGCAG+GGG | 0.606074 | 4.3:+3836393 | MS.gene55860:CDS |
| GACATGTCTTGTTATGACTA+CGG | 0.606987 | 4.3:+3832681 | MS.gene55860:CDS |
| TGTAAGTTAGATTCAAGATG+TGG | 0.608430 | 4.3:+3837922 | MS.gene55860:intron |
| AGCTTCAAGACAGTGCAAGA+AGG | 0.609159 | 4.3:+3838727 | MS.gene55860:CDS |
| GATATGTACCTTTAGATGAG+TGG | 0.609300 | 4.3:+3835466 | MS.gene55860:intron |
| AATGGAGCAAGAGCCAGCAA+TGG | 0.609412 | 4.3:+3832183 | None:intergenic |
| TGAAATGGATCAAGTGTGAA+AGG | 0.609448 | 4.3:-3832424 | None:intergenic |
| TCCAAGGGCCGGAGATCAGG+AGG | 0.609949 | 4.3:-3837302 | None:intergenic |
| GTCGTGGCAAAGATGAGCGT+GGG | 0.610558 | 4.3:+3835500 | MS.gene55860:CDS |
| CGCAGGTGCGTTCTGAACTG+CGG | 0.612007 | 4.3:-3832297 | None:intergenic |
| CGTCGTGGCAAAGATGAGCG+TGG | 0.615347 | 4.3:+3835499 | MS.gene55860:CDS |
| AACTGCTACTTCGTGAACGC+AGG | 0.617384 | 4.3:-3832314 | None:intergenic |
| GAGCAGGAATCAACAACACT+CGG | 0.620756 | 4.3:+3832205 | MS.gene55860:CDS |
| ATCAAATTAAGTGCTTTGAG+AGG | 0.623177 | 4.3:+3837945 | MS.gene55860:CDS |
| ACAGATGTAGGGTTGATGAC+TGG | 0.623281 | 4.3:+3832634 | MS.gene55860:CDS |
| TGTAGTTCAATTGAAAGGAA+GGG | 0.623395 | 4.3:+3838429 | MS.gene55860:CDS |
| CCAAGAGGAAAAGGATACAG+TGG | 0.624075 | 4.3:+3834973 | MS.gene55860:CDS |
| TAAACATTAATTCGGTGACA+AGG | 0.624665 | 4.3:-3838483 | None:intergenic |
| ACTTGACTTCAATTCCCAAG+AGG | 0.624800 | 4.3:+3834958 | MS.gene55860:CDS |
| AGATTAAAGTAAGAGAAGGT+GGG | 0.625932 | 4.3:+3836954 | MS.gene55860:intron |
| TATATGAAGGATCGTGAAAG+GGG | 0.635140 | 4.3:+3832781 | MS.gene55860:CDS |
| AATTGCGTATTCTGCAATTG+CGG | 0.635689 | 4.3:-3832518 | None:intergenic |
| AAAACCATCTTAATAGCAGG+TGG | 0.640804 | 4.3:-3832835 | None:intergenic |
| CAGTGCAAGAAGGATAGCAG+AGG | 0.642671 | 4.3:+3838737 | MS.gene55860:CDS |
| GCGCATCGGATGGGATGTGA+AGG | 0.653260 | 4.3:-3840912 | None:intergenic |
| TTTCACCTTTCTCTCCAGGG+CGG | 0.655858 | 4.3:-3837105 | None:intergenic |
| TTACTGTCTCAGTAGCAAAG+AGG | 0.661591 | 4.3:-3835168 | None:intergenic |
| TCAGTGTAAACTACGTGACA+GGG | 0.662220 | 4.3:-3832922 | None:intergenic |
| CTCTCCAACCCTCTCCACAA+CGG | 0.662230 | 4.3:+3832382 | MS.gene55860:CDS |
| TGCCCAGCTCCTGAACAGCA+AGG | 0.669683 | 4.3:-3837343 | None:intergenic |
| AAACTTGGTGAAGGGAAGGG+TGG | 0.671860 | 4.3:+3833075 | MS.gene55860:CDS |
| ATGCCACAGAGTTTGCGGAG+TGG | 0.675154 | 4.3:+3832878 | MS.gene55860:CDS |
| AATCCACTCCGCAAACTCTG+TGG | 0.678770 | 4.3:-3832881 | None:intergenic |
| AATGAATAACCTCAAAGACA+TGG | 0.682984 | 4.3:+3836098 | MS.gene55860:CDS |
| GTACCTTTAGATGAGTGGAA+GGG | 0.683809 | 4.3:+3835471 | MS.gene55860:intron |
| ATGTTGCCACTTCTTCAGCG+AGG | 0.692681 | 4.3:+3835064 | MS.gene55860:CDS |
| TATCACTTACCAGTCGACCA+GGG | 0.697939 | 4.3:-3836630 | None:intergenic |
| ACTGCTGTTAAGAAGTGGGA+TGG | 0.700131 | 4.3:+3835318 | MS.gene55860:CDS |
| AAATGACTGACATCTTCGAG+GGG | 0.700286 | 4.3:+3839939 | MS.gene55860:CDS |
| AGATTAATGGTAATTGAACA+GGG | 0.701469 | 4.3:-3837250 | None:intergenic |
| AGCAGAAGGCCAGTTCACTG+CGG | 0.731901 | 4.3:+3836194 | MS.gene55860:CDS |
| GCGAGTGAAAGCCTTCGACG+GGG | 0.744115 | 4.3:+3840795 | MS.gene55860:CDS |
| AGAGAAAGGTGAAATGCATG+TGG | 0.767410 | 4.3:+3837114 | MS.gene55860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 3832184 | 3841254 | 3832184 | ID=MS.gene55860 |
| chr4.3 | mRNA | 3832184 | 3841254 | 3832184 | ID=MS.gene55860.t1;Parent=MS.gene55860 |
| chr4.3 | exon | 3832184 | 3833167 | 3832184 | ID=MS.gene55860.t1.exon1;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3832184 | 3833167 | 3832184 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3834872 | 3835186 | 3834872 | ID=MS.gene55860.t1.exon2;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3834872 | 3835186 | 3834872 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3835276 | 3835380 | 3835276 | ID=MS.gene55860.t1.exon3;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3835276 | 3835380 | 3835276 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3835481 | 3835549 | 3835481 | ID=MS.gene55860.t1.exon4;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3835481 | 3835549 | 3835481 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3836093 | 3836260 | 3836093 | ID=MS.gene55860.t1.exon5;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3836093 | 3836260 | 3836093 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3836346 | 3836417 | 3836346 | ID=MS.gene55860.t1.exon6;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3836346 | 3836417 | 3836346 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3836526 | 3836642 | 3836526 | ID=MS.gene55860.t1.exon7;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3836526 | 3836642 | 3836526 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3836956 | 3837135 | 3836956 | ID=MS.gene55860.t1.exon8;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3836956 | 3837135 | 3836956 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3837248 | 3837406 | 3837248 | ID=MS.gene55860.t1.exon9;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3837248 | 3837406 | 3837248 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3837745 | 3837834 | 3837745 | ID=MS.gene55860.t1.exon10;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3837745 | 3837834 | 3837745 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3837932 | 3838024 | 3837932 | ID=MS.gene55860.t1.exon11;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3837932 | 3838024 | 3837932 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3838355 | 3838508 | 3838355 | ID=MS.gene55860.t1.exon12;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3838355 | 3838508 | 3838355 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3838610 | 3838758 | 3838610 | ID=MS.gene55860.t1.exon13;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3838610 | 3838758 | 3838610 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3838835 | 3838930 | 3838835 | ID=MS.gene55860.t1.exon14;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3838835 | 3838930 | 3838835 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3839914 | 3840006 | 3839914 | ID=MS.gene55860.t1.exon15;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3839914 | 3840006 | 3839914 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3840738 | 3840816 | 3840738 | ID=MS.gene55860.t1.exon16;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3840738 | 3840816 | 3840738 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3840865 | 3840963 | 3840865 | ID=MS.gene55860.t1.exon17;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3840865 | 3840963 | 3840865 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| chr4.3 | exon | 3841229 | 3841254 | 3841229 | ID=MS.gene55860.t1.exon18;Parent=MS.gene55860.t1 |
| chr4.3 | CDS | 3841229 | 3841254 | 3841229 | ID=cds.MS.gene55860.t1;Parent=MS.gene55860.t1 |
| Gene Sequence |
| Protein sequence |
