Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033519.t1 | XP_003624231.1 | 98 | 983 | 17 | 2 | 1 | 980 | 1 | 983 | 0.00E+00 | 1868.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033519.t1 | Q9XIF2 | 77.2 | 992 | 210 | 5 | 1 | 980 | 1 | 988 | 0.0e+00 | 1510.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033519.t1 | G7KSG0 | 98.0 | 983 | 17 | 2 | 1 | 980 | 1 | 983 | 0.0e+00 | 1868.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033519.t1 | MTR_7g080730 | 98.576 | 983 | 11 | 2 | 1 | 980 | 1 | 983 | 0.0 | 1989 |
MS.gene033519.t1 | MTR_8g101340 | 49.483 | 968 | 448 | 10 | 26 | 980 | 45 | 984 | 0.0 | 926 |
MS.gene033519.t1 | MTR_5g069360 | 42.564 | 975 | 491 | 13 | 26 | 980 | 42 | 967 | 0.0 | 788 |
MS.gene033519.t1 | MTR_3g462290 | 35.900 | 1000 | 561 | 18 | 51 | 980 | 342 | 1331 | 0.0 | 575 |
MS.gene033519.t1 | MTR_5g036660 | 34.639 | 485 | 268 | 13 | 49 | 496 | 137 | 609 | 6.87e-68 | 248 |
MS.gene033519.t1 | MTR_3g025300 | 27.313 | 454 | 250 | 19 | 39 | 465 | 1266 | 1666 | 9.03e-28 | 122 |
MS.gene033519.t1 | MTR_3g025300 | 25.514 | 486 | 256 | 16 | 32 | 463 | 395 | 828 | 5.08e-26 | 116 |
MS.gene033519.t1 | MTR_3g025300 | 27.313 | 454 | 250 | 19 | 39 | 465 | 1266 | 1666 | 1.00e-27 | 122 |
MS.gene033519.t1 | MTR_3g025300 | 25.514 | 486 | 256 | 16 | 32 | 463 | 395 | 828 | 5.71e-26 | 116 |
MS.gene033519.t1 | MTR_1g008600 | 24.736 | 473 | 262 | 18 | 34 | 462 | 505 | 927 | 5.38e-24 | 110 |
MS.gene033519.t1 | MTR_4g008780 | 31.754 | 211 | 105 | 12 | 58 | 238 | 88 | 289 | 1.16e-16 | 85.5 |
MS.gene033519.t1 | MTR_2g030905 | 24.942 | 429 | 248 | 17 | 58 | 462 | 154 | 532 | 1.20e-16 | 85.9 |
MS.gene033519.t1 | MTR_4g011450 | 29.231 | 260 | 137 | 13 | 18 | 238 | 1276 | 1527 | 1.62e-16 | 85.5 |
MS.gene033519.t1 | MTR_4g008770 | 32.487 | 197 | 99 | 11 | 58 | 227 | 460 | 649 | 7.33e-16 | 82.8 |
MS.gene033519.t1 | MTR_4g008770 | 32.487 | 197 | 99 | 11 | 58 | 227 | 148 | 337 | 1.47e-15 | 81.6 |
MS.gene033519.t1 | MTR_2g064740 | 28.774 | 212 | 110 | 11 | 58 | 238 | 1371 | 1572 | 5.06e-14 | 77.4 |
MS.gene033519.t1 | MTR_7g075463 | 39.362 | 94 | 49 | 2 | 375 | 463 | 336 | 426 | 8.18e-12 | 70.1 |
MS.gene033519.t1 | MTR_7g075463 | 39.362 | 94 | 49 | 2 | 375 | 463 | 336 | 426 | 9.70e-12 | 69.7 |
MS.gene033519.t1 | MTR_7g075463 | 39.362 | 94 | 49 | 2 | 375 | 463 | 336 | 426 | 1.34e-11 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene033519.t1 | AT1G59760 | 77.218 | 992 | 210 | 5 | 1 | 980 | 1 | 988 | 0.0 | 1575 |
MS.gene033519.t1 | AT2G06990 | 48.980 | 980 | 472 | 8 | 14 | 980 | 31 | 995 | 0.0 | 933 |
MS.gene033519.t1 | AT3G46960 | 35.743 | 1010 | 544 | 20 | 54 | 980 | 220 | 1207 | 0.0 | 563 |
MS.gene033519.t1 | AT3G46960 | 35.743 | 1010 | 544 | 20 | 54 | 980 | 229 | 1216 | 0.0 | 562 |
MS.gene033519.t1 | AT3G46960 | 35.743 | 1010 | 544 | 20 | 54 | 980 | 357 | 1344 | 0.0 | 561 |
MS.gene033519.t1 | AT1G70070 | 35.565 | 478 | 263 | 10 | 54 | 496 | 151 | 618 | 6.46e-72 | 260 |
MS.gene033519.t1 | AT5G61140 | 25.495 | 455 | 257 | 16 | 39 | 465 | 1336 | 1736 | 6.05e-28 | 122 |
MS.gene033519.t1 | AT5G61140 | 25.225 | 444 | 243 | 16 | 57 | 463 | 507 | 898 | 1.11e-24 | 112 |
MS.gene033519.t1 | AT5G61140 | 25.495 | 455 | 257 | 16 | 39 | 465 | 1325 | 1725 | 6.69e-28 | 122 |
MS.gene033519.t1 | AT5G61140 | 25.225 | 444 | 243 | 16 | 57 | 463 | 507 | 898 | 1.17e-24 | 112 |
MS.gene033519.t1 | AT4G32700 | 25.050 | 499 | 276 | 18 | 8 | 462 | 474 | 918 | 5.76e-25 | 113 |
MS.gene033519.t1 | AT1G20960 | 26.351 | 444 | 236 | 18 | 58 | 463 | 505 | 895 | 6.45e-24 | 109 |
MS.gene033519.t1 | AT1G20960 | 25.940 | 266 | 143 | 13 | 18 | 238 | 1296 | 1552 | 2.49e-12 | 72.0 |
MS.gene033519.t1 | AT1G20960 | 26.351 | 444 | 236 | 18 | 58 | 463 | 505 | 895 | 6.45e-24 | 109 |
MS.gene033519.t1 | AT1G20960 | 25.940 | 266 | 143 | 13 | 18 | 238 | 1296 | 1552 | 2.49e-12 | 72.0 |
MS.gene033519.t1 | AT2G42270 | 24.558 | 452 | 252 | 16 | 49 | 463 | 497 | 896 | 1.94e-22 | 105 |
MS.gene033519.t1 | AT2G42270 | 22.737 | 453 | 231 | 19 | 58 | 462 | 1352 | 1733 | 3.38e-19 | 94.4 |
MS.gene033519.t1 | AT3G27730 | 29.947 | 187 | 116 | 5 | 288 | 463 | 244 | 426 | 4.46e-12 | 70.9 |
MS.gene033519.t1 | AT3G27730 | 29.947 | 187 | 116 | 5 | 288 | 463 | 244 | 426 | 4.46e-12 | 70.9 |
MS.gene033519.t1 | AT3G27730 | 29.947 | 187 | 116 | 5 | 288 | 463 | 244 | 426 | 4.46e-12 | 70.9 |
MS.gene033519.t1 | AT3G27730 | 29.947 | 187 | 116 | 5 | 288 | 463 | 244 | 426 | 4.48e-12 | 70.9 |
MS.gene033519.t1 | AT3G27730 | 29.947 | 187 | 116 | 5 | 288 | 463 | 244 | 426 | 4.48e-12 | 70.9 |
MS.gene033519.t1 | AT3G27730 | 29.947 | 187 | 116 | 5 | 288 | 463 | 244 | 426 | 4.48e-12 | 70.9 |
MS.gene033519.t1 | AT3G27730 | 29.947 | 187 | 116 | 5 | 288 | 463 | 244 | 426 | 4.48e-12 | 70.9 |
Find 208 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGGCGGCGATTTCCTCTTTA+AGG | 0.109135 | 7.3:-26779538 | None:intergenic |
GACGATGTCCCTCTTGATTT+TGG | 0.134543 | 7.3:-26789921 | None:intergenic |
GTCATTTAGGCCTGATATTA+TGG | 0.201439 | 7.3:+26789718 | MS.gene033519:CDS |
ACCTTGTCATATTGTTTATA+CGG | 0.254047 | 7.3:+26781100 | MS.gene033519:CDS |
GAAGGATTATTACAATCTTC+TGG | 0.257468 | 7.3:+26785530 | MS.gene033519:CDS |
TCAGCAAATTCTTTGGCATT+AGG | 0.265700 | 7.3:-26780940 | None:intergenic |
CACCCAATCAGCAAATTCTT+TGG | 0.268430 | 7.3:-26780947 | None:intergenic |
CAGCAAATTCTTTGGCATTA+GGG | 0.269491 | 7.3:-26780939 | None:intergenic |
ATTTCTGCAGATGGCGAAAA+TGG | 0.271936 | 7.3:+26781514 | MS.gene033519:intron |
ACTTGTCCCCATCAAATTTC+CGG | 0.276089 | 7.3:-26784621 | None:intergenic |
GGTCTTTGCAGGTTCTTTAT+TGG | 0.285514 | 7.3:-26779667 | None:intergenic |
GTCTTTGCAGGTTCTTTATT+GGG | 0.292981 | 7.3:-26779666 | None:intergenic |
TCGATCACTTCCTTTAGAAT+TGG | 0.300189 | 7.3:-26783014 | None:intergenic |
AAAGGCTTTACCTGAGATAT+AGG | 0.313127 | 7.3:-26785987 | None:intergenic |
AATTTGATGGGGACAAGTTT+AGG | 0.314554 | 7.3:+26784626 | MS.gene033519:CDS |
TGATTACTAAGTGCTTTAAT+AGG | 0.318601 | 7.3:-26779936 | None:intergenic |
ATGGCGAAAATGGATCTTAA+TGG | 0.321505 | 7.3:+26781524 | MS.gene033519:CDS |
AGCCTCCCAGGCTGTAAATA+AGG | 0.322872 | 7.3:-26785615 | None:intergenic |
AAGACAAAACGGGCATTCTT+TGG | 0.334017 | 7.3:-26780901 | None:intergenic |
CGATCACTTCCTTTAGAATT+GGG | 0.347514 | 7.3:-26783013 | None:intergenic |
ATCTACTACTTTAGCATTCA+AGG | 0.353316 | 7.3:+26788428 | MS.gene033519:CDS |
TGGCGAAAATGGATCTTAAT+GGG | 0.356795 | 7.3:+26781525 | MS.gene033519:CDS |
CACACCTTCATGTCTTCTTC+AGG | 0.358573 | 7.3:-26788165 | None:intergenic |
TAGAAGGAACTACAAATATA+AGG | 0.358581 | 7.3:-26789954 | None:intergenic |
CACCATCTTCACAGCGCATT+TGG | 0.363464 | 7.3:-26785179 | None:intergenic |
GAAAACGCTAAGTGGCAAAA+AGG | 0.368725 | 7.3:+26781275 | MS.gene033519:CDS |
ATCGAGTTCTTCTCGAGGTT+TGG | 0.375902 | 7.3:-26789148 | None:intergenic |
ATTGAACATTAGTTCTGTTA+AGG | 0.382269 | 7.3:-26789043 | None:intergenic |
AGGTCATGACTACGGAAATC+TGG | 0.382388 | 7.3:+26780755 | MS.gene033519:intron |
ATCGCGAAAGAGGTGTGGTT+TGG | 0.389553 | 7.3:+26780857 | MS.gene033519:CDS |
GTACTTAGTTGTGGATGAAA+AGG | 0.391326 | 7.3:+26781178 | MS.gene033519:CDS |
ACTTTGTAAGATGCATCTTC+CGG | 0.395837 | 7.3:-26785861 | None:intergenic |
ACAAATGTCCGGAAATTTGA+TGG | 0.398421 | 7.3:+26784613 | MS.gene033519:CDS |
GTGAAAGGGAAGGTCTTTGC+AGG | 0.399874 | 7.3:-26779678 | None:intergenic |
CCTTGCATTCAAGCTGAAGC+TGG | 0.400039 | 7.3:-26789212 | None:intergenic |
CAACATTATATATTTCCTTC+CGG | 0.402599 | 7.3:+26781143 | MS.gene033519:CDS |
TCTGATGTTGGTTTGATGAC+TGG | 0.405642 | 7.3:+26779987 | MS.gene033519:CDS |
AATGTTCAATGGTGTCTTCA+AGG | 0.420240 | 7.3:+26789056 | MS.gene033519:CDS |
ATAGAAGCAGCTAAGTCAAT+TGG | 0.420476 | 7.3:+26789860 | MS.gene033519:CDS |
CTTTCTGAAAGCTGTCTTCA+CGG | 0.420990 | 7.3:-26781208 | None:intergenic |
TCGCGAAAGAGGTGTGGTTT+GGG | 0.423444 | 7.3:+26780858 | MS.gene033519:CDS |
CACAGTCGTGTAGTAGTTGT+TGG | 0.434572 | 7.3:-26779587 | None:intergenic |
TGCCAAAGAATTTGCTGATT+GGG | 0.434852 | 7.3:+26780945 | MS.gene033519:CDS |
CTCGCCAGACAAAACAAGAT+AGG | 0.441660 | 7.3:-26789107 | None:intergenic |
TGATCCTAGTGCCTCTTGCT+TGG | 0.441839 | 7.3:+26780022 | MS.gene033519:CDS |
TCCAACGGCAAAAGATCCTT+TGG | 0.442143 | 7.3:-26788066 | None:intergenic |
TACACAACCTCCATAATATC+AGG | 0.445091 | 7.3:-26789728 | None:intergenic |
TAAGTACAGACCCTCACTTC+CGG | 0.445197 | 7.3:-26781162 | None:intergenic |
GGTTTCAATTCCTATATCTC+AGG | 0.445399 | 7.3:+26785977 | MS.gene033519:CDS |
CCCTTGCTCAAACGTGGAAT+AGG | 0.446304 | 7.3:+26782969 | MS.gene033519:CDS |
ACATAGAAGTTTGAATAAAG+AGG | 0.447076 | 7.3:+26785557 | MS.gene033519:CDS |
TGACGAAGAAGACAGTTTGA+AGG | 0.449850 | 7.3:+26785512 | MS.gene033519:CDS |
GTGTCTGCACATACTTCTGC+TGG | 0.451425 | 7.3:+26779843 | MS.gene033519:CDS |
ATCCCGTAGAATAGAGGCTT+TGG | 0.452604 | 7.3:+26788284 | MS.gene033519:CDS |
CATTAGGGACAGTGGCAGAT+AGG | 0.453599 | 7.3:-26780924 | None:intergenic |
AAGGAAATATATAATGTTGA+AGG | 0.454907 | 7.3:-26781139 | None:intergenic |
AAACAATATGACAAGGTTGT+TGG | 0.457424 | 7.3:-26781094 | None:intergenic |
TGGTGTCTTCAAGGACATAA+AGG | 0.457457 | 7.3:+26789065 | MS.gene033519:CDS |
ATAGGAATTGAAACCACAAT+AGG | 0.461372 | 7.3:-26785969 | None:intergenic |
TTCCCGCTGCTGATGGTGAT+AGG | 0.461884 | 7.3:+26781246 | MS.gene033519:CDS |
TGGCAGATAGGAAGACAAAA+CGG | 0.465801 | 7.3:-26780912 | None:intergenic |
CGAAAACTCAGAATCCGTTA+TGG | 0.467418 | 7.3:+26779737 | MS.gene033519:CDS |
TGGTTTACTCCCAATTCTAA+AGG | 0.471314 | 7.3:+26783004 | MS.gene033519:CDS |
GTGTGAATTTCTTGCAATGC+AGG | 0.471783 | 7.3:+26781406 | MS.gene033519:CDS |
CATTTGTATATATTCTCCAC+TGG | 0.474713 | 7.3:-26784656 | None:intergenic |
TACATGCGTGATCGCGAAAG+AGG | 0.475262 | 7.3:+26780847 | MS.gene033519:CDS |
GGGCAGCTGATAGTTTAAAC+AGG | 0.475906 | 7.3:+26784779 | MS.gene033519:CDS |
TGAAAGGGGTCGAGTGTGAA+AGG | 0.476355 | 7.3:-26779693 | None:intergenic |
AAGAGGGTTCTTCGGAGGCT+AGG | 0.479883 | 7.3:+26788468 | MS.gene033519:CDS |
GTTAATAGCTTGAGATTGAA+AGG | 0.481005 | 7.3:-26779709 | None:intergenic |
TTGGGAGATGAAGAAGAAGG+TGG | 0.481265 | 7.3:-26779648 | None:intergenic |
CTTTCTAGATTTAGTGAGAA+GGG | 0.482853 | 7.3:+26788126 | MS.gene033519:CDS |
TGTTTACCTTATTTACAGCC+TGG | 0.482867 | 7.3:+26785609 | MS.gene033519:CDS |
TTAATAGCTTGAGATTGAAA+GGG | 0.484101 | 7.3:-26779708 | None:intergenic |
GGCGATGGTTCTTCTTCTCC+CGG | 0.485989 | 7.3:-26779558 | None:intergenic |
GTTTCAAGAAGGTCTAATCA+AGG | 0.492777 | 7.3:+26783043 | MS.gene033519:CDS |
AGGCAAGAAAGAGGGTTCTT+CGG | 0.492790 | 7.3:+26788460 | MS.gene033519:CDS |
CAAATGTCCGGAAATTTGAT+GGG | 0.493522 | 7.3:+26784614 | MS.gene033519:CDS |
TCTCCAAAGCCTCTATTCTA+CGG | 0.494153 | 7.3:-26788287 | None:intergenic |
TTCAAAGTTCTATGAGATCA+TGG | 0.494449 | 7.3:+26789766 | MS.gene033519:CDS |
AAAAGCATCCCGTAGAATAG+AGG | 0.497857 | 7.3:+26788278 | MS.gene033519:CDS |
GGAGATGAAGAAGAAGGTGG+AGG | 0.499252 | 7.3:-26779645 | None:intergenic |
ACAAAGGGTCTGAGGTCACT+AGG | 0.500100 | 7.3:+26780791 | MS.gene033519:CDS |
AGAGGGTTCTTCGGAGGCTA+GGG | 0.503872 | 7.3:+26788469 | MS.gene033519:CDS |
TTATGGAGGTTGTGTATGCT+TGG | 0.504319 | 7.3:+26789735 | MS.gene033519:CDS |
CTCCAAAGCCTCTATTCTAC+GGG | 0.506679 | 7.3:-26788286 | None:intergenic |
GTTGTGTATGCTTGGGCGAA+AGG | 0.507277 | 7.3:+26789743 | MS.gene033519:CDS |
TGGAGAGAAACGAGCCTCCC+AGG | 0.510071 | 7.3:-26785627 | None:intergenic |
ATGCCAAAGAATTTGCTGAT+TGG | 0.510427 | 7.3:+26780944 | MS.gene033519:CDS |
TCCTATTCCACGTTTGAGCA+AGG | 0.510479 | 7.3:-26782970 | None:intergenic |
GACAATGTGGTCGACTTGAA+AGG | 0.514288 | 7.3:+26788982 | MS.gene033519:CDS |
GTTTACCTTATTTACAGCCT+GGG | 0.514370 | 7.3:+26785610 | MS.gene033519:CDS |
TACTTAGTTGTGGATGAAAA+GGG | 0.515805 | 7.3:+26781179 | MS.gene033519:CDS |
TTAACAGAACTAATGTTCAA+TGG | 0.517657 | 7.3:+26789045 | MS.gene033519:CDS |
GCTCTTATTCCCGCTGCTGA+TGG | 0.521231 | 7.3:+26781239 | MS.gene033519:CDS |
CCTATTCCACGTTTGAGCAA+GGG | 0.522248 | 7.3:-26782969 | None:intergenic |
ATTTGCTGATTGGGTGGCAA+AGG | 0.522437 | 7.3:+26780954 | MS.gene033519:CDS |
CCAGCTTCAGCTTGAATGCA+AGG | 0.523581 | 7.3:+26789212 | MS.gene033519:CDS |
TCGAGCCATTCCTGATCTTG+AGG | 0.524397 | 7.3:+26785248 | MS.gene033519:CDS |
AAATAAGGTAAACAGTGTCT+TGG | 0.524512 | 7.3:-26785600 | None:intergenic |
CCTCATGGTTGATGAGAAGA+TGG | 0.525125 | 7.3:+26784726 | MS.gene033519:CDS |
GGCAGATAGGAAGACAAAAC+GGG | 0.525213 | 7.3:-26780911 | None:intergenic |
ATATAATGTTGAAGGGGAGT+TGG | 0.526101 | 7.3:-26781131 | None:intergenic |
GCAAGAGGCACTAGGATCAA+TGG | 0.527306 | 7.3:-26780018 | None:intergenic |
CTTCCTCACTAGAAGTGCAT+TGG | 0.527980 | 7.3:-26785647 | None:intergenic |
CTAAAGCTGAAAAGTATCAC+AGG | 0.529799 | 7.3:-26781374 | None:intergenic |
CTTAAAGAGGAAATCGCCGC+CGG | 0.531249 | 7.3:+26779539 | MS.gene033519:CDS |
AGGAAATATATAATGTTGAA+GGG | 0.531599 | 7.3:-26781138 | None:intergenic |
TGTAGTAGTTGTTGGGAGGA+AGG | 0.531662 | 7.3:-26779579 | None:intergenic |
AGGATTAAGGGTGTTTCTGA+AGG | 0.532900 | 7.3:+26785729 | MS.gene033519:CDS |
ACAATGTGGTCGACTTGAAA+GGG | 0.533604 | 7.3:+26788983 | MS.gene033519:CDS |
CTTGCATTCAAGCTGAAGCT+GGG | 0.533738 | 7.3:-26789211 | None:intergenic |
ATCGAGATCTTGTTTCAAGA+AGG | 0.534720 | 7.3:+26783032 | MS.gene033519:CDS |
TTCCTATCACCATCAGCAGC+GGG | 0.534985 | 7.3:-26781248 | None:intergenic |
CATGTTGTAGCTTAAATGAA+AGG | 0.535435 | 7.3:-26785148 | None:intergenic |
ATGAGCTCAAGGCAAGAAAG+AGG | 0.538962 | 7.3:+26788451 | MS.gene033519:CDS |
GTCGACGAGGTATTGATGAC+CGG | 0.539554 | 7.3:+26784692 | MS.gene033519:CDS |
CACAATTACAAGATACTGCT+CGG | 0.542637 | 7.3:+26789181 | MS.gene033519:CDS |
AAAAGGTTTGGTGCTGGGCA+AGG | 0.545517 | 7.3:+26781292 | MS.gene033519:CDS |
TGAGGGTCTGTACTTAGTTG+TGG | 0.546367 | 7.3:+26781169 | MS.gene033519:CDS |
ACAGTCGTGTAGTAGTTGTT+GGG | 0.548601 | 7.3:-26779586 | None:intergenic |
ATACAAATGAGTGGTCGTGC+TGG | 0.549699 | 7.3:+26784670 | MS.gene033519:CDS |
TAGATCAATTAGAAGACTTG+AGG | 0.550410 | 7.3:+26789820 | MS.gene033519:CDS |
GTGTTAGTTGTATACCATAA+CGG | 0.551589 | 7.3:-26779751 | None:intergenic |
AACCAAATGCGCTGTGAAGA+TGG | 0.552675 | 7.3:+26785177 | MS.gene033519:CDS |
GGCGTAGTATGCAATACAAA+GGG | 0.556159 | 7.3:+26780776 | MS.gene033519:CDS |
ATATTTCCTTCCGGAAGTGA+GGG | 0.557515 | 7.3:+26781152 | MS.gene033519:CDS |
GCTACAGAGACCTTCAGCAT+TGG | 0.559468 | 7.3:+26784559 | MS.gene033519:CDS |
GCGCTGTGAAGATGGTGATC+CGG | 0.560404 | 7.3:+26785185 | MS.gene033519:CDS |
TTGATGGGGACAAGTTTAGG+TGG | 0.561783 | 7.3:+26784629 | MS.gene033519:CDS |
TATGGAGGTTGTGTATGCTT+GGG | 0.562105 | 7.3:+26789736 | MS.gene033519:CDS |
TAAAGACTCTTGAAGAAGAG+AGG | 0.562228 | 7.3:+26785475 | MS.gene033519:CDS |
AAACAATGGGATCCTTAAAG+AGG | 0.562800 | 7.3:+26779526 | None:intergenic |
AGGTCACTAGGGAGGTAGCT+TGG | 0.564193 | 7.3:+26780803 | MS.gene033519:CDS |
CATACCAAGCAAGAGGCACT+AGG | 0.567518 | 7.3:-26780026 | None:intergenic |
TATATTTCCTTCCGGAAGTG+AGG | 0.568482 | 7.3:+26781151 | MS.gene033519:CDS |
CAAAGGGTCTGAGGTCACTA+GGG | 0.569814 | 7.3:+26780792 | MS.gene033519:CDS |
AATTGGAGAAATTGAGCTTG+AGG | 0.570010 | 7.3:+26789877 | MS.gene033519:CDS |
AAAGACTCTTGAAGAAGAGA+GGG | 0.570286 | 7.3:+26785476 | MS.gene033519:CDS |
TCTTTCTAGATTTAGTGAGA+AGG | 0.571697 | 7.3:+26788125 | MS.gene033519:CDS |
AGCATTCAAGGATGAGCTCA+AGG | 0.572678 | 7.3:+26788440 | MS.gene033519:CDS |
GAGATGAAGAAGAAGGTGGA+GGG | 0.573830 | 7.3:-26779644 | None:intergenic |
TCGACGAGGTATTGATGACC+GGG | 0.575134 | 7.3:+26784693 | MS.gene033519:CDS |
GAAAGGGGTCGAGTGTGAAA+GGG | 0.577874 | 7.3:-26779692 | None:intergenic |
TACCTTATTTACAGCCTGGG+AGG | 0.578083 | 7.3:+26785613 | MS.gene033519:CDS |
TGATGATAAGAAGCTTCCTC+AGG | 0.578518 | 7.3:+26781607 | MS.gene033519:CDS |
AGATGATGCAAGCATAAAGC+CGG | 0.579138 | 7.3:+26785842 | MS.gene033519:intron |
ACAAACCTCAAGATCAGGAA+TGG | 0.579158 | 7.3:-26785253 | None:intergenic |
TTATTGGGAGATGAAGAAGA+AGG | 0.581146 | 7.3:-26779651 | None:intergenic |
AGTTGTTGGGAGGAAGGCGA+TGG | 0.583369 | 7.3:-26779573 | None:intergenic |
TATTGAAGATCAGTTGACAT+GGG | 0.585003 | 7.3:+26785686 | MS.gene033519:CDS |
TTCTGCTGGGAAAACTGTTG+TGG | 0.589078 | 7.3:+26779857 | MS.gene033519:CDS |
AGAACGTGGAGAACCTATTG+TGG | 0.590897 | 7.3:+26785956 | MS.gene033519:CDS |
CCGGGGAGTATGTATCCTCA+TGG | 0.593714 | 7.3:+26784711 | MS.gene033519:CDS |
TCTCCAATGCACTTCTAGTG+AGG | 0.594103 | 7.3:+26785644 | MS.gene033519:CDS |
ATGCTGCCCTTGCTCAAACG+TGG | 0.599209 | 7.3:+26782963 | MS.gene033519:CDS |
AGAAAGCGACATATTCAAGA+TGG | 0.604009 | 7.3:+26781322 | MS.gene033519:CDS |
TGGCGTAGTATGCAATACAA+AGG | 0.605128 | 7.3:+26780775 | MS.gene033519:CDS |
CACGATGTCTCATATCCACA+TGG | 0.605501 | 7.3:+26779612 | MS.gene033519:CDS |
CATATTCAAACCAATGCTGA+AGG | 0.606797 | 7.3:-26784569 | None:intergenic |
TGAGCTCAAGGCAAGAAAGA+GGG | 0.607550 | 7.3:+26788452 | MS.gene033519:CDS |
TTAAAGAGGAAATCGCCGCC+GGG | 0.608719 | 7.3:+26779540 | MS.gene033519:CDS |
TTCTTTGGCATTAGGGACAG+TGG | 0.608991 | 7.3:-26780932 | None:intergenic |
AGATCCTGAAGAAGACATGA+AGG | 0.609387 | 7.3:+26788161 | MS.gene033519:CDS |
GCTTGAGGCAAAGTTTGAAG+AGG | 0.612703 | 7.3:+26789892 | MS.gene033519:CDS |
AATGTTGAAGGGGAGTTGGT+CGG | 0.613901 | 7.3:-26781127 | None:intergenic |
GGAAATATATAATGTTGAAG+GGG | 0.613970 | 7.3:-26781137 | None:intergenic |
TTTCCTATCACCATCAGCAG+CGG | 0.617188 | 7.3:-26781249 | None:intergenic |
ATTGAAGATCAGTTGACATG+GGG | 0.617190 | 7.3:+26785687 | MS.gene033519:CDS |
TCTTAATGGGGATATAGAGA+AGG | 0.617908 | 7.3:+26781538 | MS.gene033519:CDS |
TCTTCTTCAGGATCTAGAAG+TGG | 0.620210 | 7.3:-26788153 | None:intergenic |
TAATAGCTTGAGATTGAAAG+GGG | 0.621425 | 7.3:-26779707 | None:intergenic |
ATTTAGGCCTGATATTATGG+AGG | 0.621480 | 7.3:+26789721 | MS.gene033519:CDS |
TGTCTGCACATACTTCTGCT+GGG | 0.622138 | 7.3:+26779844 | MS.gene033519:CDS |
AGGCAGTGTCCAAAATCAAG+AGG | 0.624431 | 7.3:+26789912 | MS.gene033519:CDS |
TTATTGAAGATCAGTTGACA+TGG | 0.628918 | 7.3:+26785685 | MS.gene033519:CDS |
GTAGTAGCATACCAAGCAAG+AGG | 0.633717 | 7.3:-26780033 | None:intergenic |
CCATGAGGATACATACTCCC+CGG | 0.637452 | 7.3:-26784711 | None:intergenic |
CAAAGAATTTGCTGATTGGG+TGG | 0.637884 | 7.3:+26780948 | MS.gene033519:CDS |
TATGCAATACAAAGGGTCTG+AGG | 0.638495 | 7.3:+26780783 | MS.gene033519:CDS |
GGCGAAAATGGATCTTAATG+GGG | 0.645395 | 7.3:+26781526 | MS.gene033519:CDS |
GGCAGTGTCCAAAATCAAGA+GGG | 0.648163 | 7.3:+26789913 | MS.gene033519:CDS |
GGAATAGGAGTACATCACTC+TGG | 0.648671 | 7.3:+26782984 | MS.gene033519:CDS |
GGAGAATATATACAAATGAG+TGG | 0.649361 | 7.3:+26784661 | MS.gene033519:CDS |
AAATGTCCGGAAATTTGATG+GGG | 0.652699 | 7.3:+26784615 | MS.gene033519:CDS |
GCGTGATCGCGAAAGAGGTG+TGG | 0.653007 | 7.3:+26780852 | MS.gene033519:CDS |
CAAGAAAGAGGGTTCTTCGG+AGG | 0.657043 | 7.3:+26788463 | MS.gene033519:CDS |
TACAGACCCTCACTTCCGGA+AGG | 0.658488 | 7.3:-26781158 | None:intergenic |
TTGAAGATCAGTTGACATGG+GGG | 0.659040 | 7.3:+26785688 | MS.gene033519:CDS |
AAGTTTAGGTGGATAACCAG+TGG | 0.660788 | 7.3:+26784640 | MS.gene033519:CDS |
GTCGTGTAGTAGTTGTTGGG+AGG | 0.661299 | 7.3:-26779583 | None:intergenic |
AGCAGATCGAGTTCTTCTCG+AGG | 0.667916 | 7.3:-26789153 | None:intergenic |
CCTGCGTCTATACATACCAA+AGG | 0.668515 | 7.3:+26788050 | MS.gene033519:CDS |
AGTGGTCGTGCTGGTCGACG+AGG | 0.669500 | 7.3:+26784679 | MS.gene033519:CDS |
TGTCTTCAAGGACATAAAGG+TGG | 0.672228 | 7.3:+26789068 | MS.gene033519:CDS |
TGTGGTCGACTTGAAAGGGA+AGG | 0.673279 | 7.3:+26788987 | MS.gene033519:CDS |
AGGGTCTGAGGTCACTAGGG+AGG | 0.676167 | 7.3:+26780795 | MS.gene033519:CDS |
GTGGTGACGAAAGATAAACT+TGG | 0.680698 | 7.3:+26785903 | MS.gene033519:CDS |
CCTTTGGTATGTATAGACGC+AGG | 0.683839 | 7.3:-26788050 | None:intergenic |
GGAGGGTGAACGTAGCCATG+TGG | 0.685026 | 7.3:-26779627 | None:intergenic |
TCCGTATAAACAATATGACA+AGG | 0.686576 | 7.3:-26781101 | None:intergenic |
GGGGTCGAGTGTGAAAGGGA+AGG | 0.690124 | 7.3:-26779688 | None:intergenic |
CCATCTTCTCATCAACCATG+AGG | 0.692068 | 7.3:-26784726 | None:intergenic |
ATTGTTCCTCTAAAAGAACG+TGG | 0.697312 | 7.3:+26785942 | MS.gene033519:CDS |
TGATATTCTTACAAGATGTG+TGG | 0.703141 | 7.3:+26785884 | MS.gene033519:CDS |
ATATGCTACAAGTGACAATG+TGG | 0.705172 | 7.3:+26788969 | MS.gene033519:CDS |
CGACGAGGTATTGATGACCG+GGG | 0.761255 | 7.3:+26784694 | MS.gene033519:CDS |
GATGGTTCTTCTTCTCCCGG+CGG | 0.778449 | 7.3:-26779555 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 26779531 | 26789967 | 26779531 | ID=MS.gene033519 |
chr7.3 | mRNA | 26779531 | 26789967 | 26779531 | ID=MS.gene033519.t1;Parent=MS.gene033519 |
chr7.3 | exon | 26779531 | 26779758 | 26779531 | ID=MS.gene033519.t1.exon1;Parent=MS.gene033519.t1 |
chr7.3 | CDS | 26779531 | 26779758 | 26779531 | ID=cds.MS.gene033519.t1;Parent=MS.gene033519.t1 |
chr7.3 | exon | 26779843 | 26780043 | 26779843 | ID=MS.gene033519.t1.exon2;Parent=MS.gene033519.t1 |
chr7.3 | CDS | 26779843 | 26780043 | 26779843 | ID=cds.MS.gene033519.t1;Parent=MS.gene033519.t1 |
chr7.3 | exon | 26780757 | 26780975 | 26780757 | ID=MS.gene033519.t1.exon3;Parent=MS.gene033519.t1 |
chr7.3 | CDS | 26780757 | 26780975 | 26780757 | ID=cds.MS.gene033519.t1;Parent=MS.gene033519.t1 |
chr7.3 | exon | 26781089 | 26781427 | 26781089 | ID=MS.gene033519.t1.exon4;Parent=MS.gene033519.t1 |
chr7.3 | CDS | 26781089 | 26781427 | 26781089 | ID=cds.MS.gene033519.t1;Parent=MS.gene033519.t1 |
chr7.3 | exon | 26781524 | 26781628 | 26781524 | ID=MS.gene033519.t1.exon5;Parent=MS.gene033519.t1 |
chr7.3 | CDS | 26781524 | 26781628 | 26781524 | ID=cds.MS.gene033519.t1;Parent=MS.gene033519.t1 |
chr7.3 | exon | 26782954 | 26783064 | 26782954 | ID=MS.gene033519.t1.exon6;Parent=MS.gene033519.t1 |
chr7.3 | CDS | 26782954 | 26783064 | 26782954 | ID=cds.MS.gene033519.t1;Parent=MS.gene033519.t1 |
chr7.3 | exon | 26784550 | 26784800 | 26784550 | ID=MS.gene033519.t1.exon7;Parent=MS.gene033519.t1 |
chr7.3 | CDS | 26784550 | 26784800 | 26784550 | ID=cds.MS.gene033519.t1;Parent=MS.gene033519.t1 |
chr7.3 | exon | 26785146 | 26785269 | 26785146 | ID=MS.gene033519.t1.exon8;Parent=MS.gene033519.t1 |
chr7.3 | CDS | 26785146 | 26785269 | 26785146 | ID=cds.MS.gene033519.t1;Parent=MS.gene033519.t1 |
chr7.3 | exon | 26785468 | 26785750 | 26785468 | ID=MS.gene033519.t1.exon9;Parent=MS.gene033519.t1 |
chr7.3 | CDS | 26785468 | 26785750 | 26785468 | ID=cds.MS.gene033519.t1;Parent=MS.gene033519.t1 |
chr7.3 | exon | 26785844 | 26785998 | 26785844 | ID=MS.gene033519.t1.exon10;Parent=MS.gene033519.t1 |
chr7.3 | CDS | 26785844 | 26785998 | 26785844 | ID=cds.MS.gene033519.t1;Parent=MS.gene033519.t1 |
chr7.3 | exon | 26788033 | 26788182 | 26788033 | ID=MS.gene033519.t1.exon11;Parent=MS.gene033519.t1 |
chr7.3 | CDS | 26788033 | 26788182 | 26788033 | ID=cds.MS.gene033519.t1;Parent=MS.gene033519.t1 |
chr7.3 | exon | 26788258 | 26788490 | 26788258 | ID=MS.gene033519.t1.exon12;Parent=MS.gene033519.t1 |
chr7.3 | CDS | 26788258 | 26788490 | 26788258 | ID=cds.MS.gene033519.t1;Parent=MS.gene033519.t1 |
chr7.3 | exon | 26788969 | 26789233 | 26788969 | ID=MS.gene033519.t1.exon13;Parent=MS.gene033519.t1 |
chr7.3 | CDS | 26788969 | 26789233 | 26788969 | ID=cds.MS.gene033519.t1;Parent=MS.gene033519.t1 |
chr7.3 | exon | 26789689 | 26789967 | 26789689 | ID=MS.gene033519.t1.exon14;Parent=MS.gene033519.t1 |
chr7.3 | CDS | 26789689 | 26789967 | 26789689 | ID=cds.MS.gene033519.t1;Parent=MS.gene033519.t1 |
Gene Sequence |
Protein sequence |