Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55935.t1 | XP_024626783.1 | 87.4 | 628 | 68 | 2 | 5 | 622 | 1 | 627 | 0.00E+00 | 1093.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55935.t1 | Q5SVZ6 | 23.5 | 469 | 319 | 10 | 133 | 589 | 472 | 912 | 2.7e-32 | 141.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55935.t1 | A0A3Q7Y6Q1 | 75.6 | 623 | 140 | 2 | 10 | 622 | 1 | 621 | 1.3e-269 | 938.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene55935 | 0.813023 | 3.16E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene55935 | 0.801582 | 8.41E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene55935 | 0.805861 | 1.09E-49 | -1.69E-46 |
| MS.gene051594 | MS.gene55935 | 0.800975 | 1.12E-48 | -1.69E-46 |
| MS.gene052584 | MS.gene55935 | 0.804908 | 1.72E-49 | -1.69E-46 |
| MS.gene053974 | MS.gene55935 | 0.801445 | 8.98E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene55935 | 0.805632 | 1.22E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene55935 | 0.80229 | 6.02E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene55935 | 0.808843 | 2.54E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene55935 | 0.804972 | 1.67E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55935.t1 | MTR_7g025210 | 79.532 | 171 | 31 | 1 | 452 | 622 | 66 | 232 | 8.00e-87 | 276 |
| MS.gene55935.t1 | MTR_7g025210 | 77.941 | 68 | 14 | 1 | 2 | 69 | 10 | 76 | 3.94e-22 | 99.4 |
| MS.gene55935.t1 | MTR_6g018650 | 80.435 | 92 | 17 | 1 | 2 | 93 | 9 | 99 | 1.21e-38 | 140 |
| MS.gene55935.t1 | MTR_4g094218 | 79.121 | 91 | 18 | 1 | 2 | 92 | 17 | 106 | 5.80e-38 | 136 |
| MS.gene55935.t1 | MTR_2g049710 | 32.609 | 230 | 100 | 2 | 380 | 609 | 1 | 175 | 2.83e-34 | 132 |
| MS.gene55935.t1 | MTR_4g109010 | 37.500 | 168 | 100 | 2 | 458 | 625 | 921 | 1083 | 2.45e-25 | 112 |
| MS.gene55935.t1 | MTR_8g032820 | 38.806 | 134 | 79 | 1 | 481 | 611 | 89 | 222 | 7.32e-25 | 107 |
| MS.gene55935.t1 | MTR_2g100760 | 90.385 | 52 | 5 | 0 | 5 | 56 | 1 | 52 | 9.57e-24 | 95.1 |
| MS.gene55935.t1 | MTR_1g054530 | 40.164 | 122 | 73 | 0 | 459 | 580 | 131 | 252 | 1.52e-22 | 97.8 |
| MS.gene55935.t1 | MTR_3g067700 | 55.385 | 65 | 28 | 1 | 63 | 127 | 4 | 67 | 3.96e-17 | 77.8 |
| MS.gene55935.t1 | MTR_7g053560 | 73.585 | 53 | 13 | 1 | 2 | 54 | 10 | 61 | 2.16e-14 | 68.9 |
| MS.gene55935.t1 | MTR_8g009340 | 32.743 | 113 | 75 | 1 | 489 | 601 | 2 | 113 | 1.17e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55935.t1 | AT1G19260 | 40.727 | 550 | 311 | 2 | 58 | 597 | 13 | 557 | 3.62e-144 | 437 |
| MS.gene55935.t1 | AT4G09660 | 35.818 | 550 | 282 | 4 | 58 | 597 | 13 | 501 | 5.78e-114 | 355 |
| MS.gene55935.t1 | AT3G29763 | 40.722 | 388 | 220 | 1 | 221 | 598 | 39 | 426 | 4.02e-99 | 312 |
| MS.gene55935.t1 | AT3G29765 | 42.368 | 321 | 185 | 0 | 275 | 595 | 2 | 322 | 2.37e-87 | 282 |
| MS.gene55935.t1 | AT1G41920 | 37.437 | 398 | 237 | 2 | 231 | 616 | 4 | 401 | 2.94e-81 | 265 |
| MS.gene55935.t1 | AT3G29450 | 34.348 | 460 | 231 | 6 | 151 | 600 | 46 | 444 | 5.75e-80 | 262 |
| MS.gene55935.t1 | AT2G06541 | 38.719 | 359 | 200 | 4 | 113 | 461 | 2 | 350 | 7.87e-77 | 255 |
| MS.gene55935.t1 | AT2G06541 | 38.719 | 359 | 200 | 4 | 113 | 461 | 2 | 350 | 1.48e-76 | 255 |
| MS.gene55935.t1 | AT3G29794 | 26.235 | 324 | 207 | 6 | 271 | 584 | 22 | 323 | 2.75e-26 | 112 |
| MS.gene55935.t1 | AT1G42710 | 31.527 | 203 | 91 | 3 | 179 | 381 | 29 | 183 | 8.25e-25 | 103 |
| MS.gene55935.t1 | AT3G31402 | 31.390 | 223 | 91 | 6 | 154 | 376 | 11 | 171 | 1.04e-23 | 104 |
| MS.gene55935.t1 | AT4G10200 | 26.196 | 397 | 246 | 12 | 29 | 410 | 28 | 392 | 2.72e-22 | 102 |
| MS.gene55935.t1 | AT4G10200 | 26.196 | 397 | 246 | 12 | 29 | 410 | 28 | 392 | 2.72e-22 | 102 |
Find 89 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTGATGAAAGAAATTA+TGG | 0.172314 | 2.3:-57531869 | MS.gene55935:CDS |
| ATAGTCTATTATTCAGAATT+TGG | 0.192732 | 2.3:+57532862 | None:intergenic |
| ATTCAAGATTTGAGAGAAAA+TGG | 0.229482 | 2.3:-57531757 | MS.gene55935:CDS |
| TACGAAGAGCGTATCTAAAA+TGG | 0.231770 | 2.3:-57533250 | MS.gene55935:CDS |
| TGTCATTCAACAACAAGATT+TGG | 0.251086 | 2.3:-57531661 | MS.gene55935:CDS |
| TTCGGTGGATATTGCCAAAT+TGG | 0.255936 | 2.3:+57533287 | None:intergenic |
| TGAATCAAGATGGGCATCTT+AGG | 0.269370 | 2.3:-57532911 | MS.gene55935:CDS |
| AAAGAATTCTCAATGTATTC+CGG | 0.270755 | 2.3:+57533335 | None:intergenic |
| CTGGAAAGCGTATTCCAATT+TGG | 0.275322 | 2.3:-57533301 | MS.gene55935:CDS |
| GGATTCTCACAAACTTGTTC+AGG | 0.290513 | 2.3:+57533407 | None:intergenic |
| TTAAAGGTTGGAAGAATGTT+AGG | 0.293223 | 2.3:-57533022 | MS.gene55935:CDS |
| TGTTGTTAATGCTATGCTTT+TGG | 0.312041 | 2.3:-57531800 | MS.gene55935:CDS |
| TTGTTACTTGATTCTCTTCA+AGG | 0.320820 | 2.3:+57531629 | None:intergenic |
| GTCATTCAACAACAAGATTT+GGG | 0.333617 | 2.3:-57531660 | MS.gene55935:CDS |
| AAACATATTCGTGAAGAAAT+TGG | 0.344114 | 2.3:-57532600 | MS.gene55935:CDS |
| CAAATTGGAATACGCTTTCC+AGG | 0.345937 | 2.3:+57533302 | None:intergenic |
| CACTTCTTCGTTAACTCTTA+AGG | 0.348171 | 2.3:-57532442 | MS.gene55935:CDS |
| TTAACTCTATTAACCTTTGA+AGG | 0.375241 | 2.3:+57533359 | None:intergenic |
| ATTGAAAATTTGTTAGAGAA+AGG | 0.388758 | 2.3:-57532117 | MS.gene55935:CDS |
| AAGAATTCTCAATGTATTCC+GGG | 0.398464 | 2.3:+57533336 | None:intergenic |
| ACGAAGAGCGTATCTAAAAT+GGG | 0.403136 | 2.3:-57533249 | MS.gene55935:CDS |
| TTGAAAATTTGTTAGAGAAA+GGG | 0.404276 | 2.3:-57532116 | MS.gene55935:CDS |
| TCTTGCAAATTCTTTCTAGT+AGG | 0.407820 | 2.3:-57532629 | MS.gene55935:CDS |
| CAAGGCGGTTTCAAGAAACT+TGG | 0.413230 | 2.3:-57533172 | MS.gene55935:CDS |
| CTTCCCTATGTGTTTAAGAA+AGG | 0.416128 | 2.3:+57532983 | None:intergenic |
| AATTCTTTAGAACGTGATCC+TGG | 0.416459 | 2.3:-57533320 | MS.gene55935:CDS |
| GTCACAAGTATTCATTTCTA+CGG | 0.420270 | 2.3:-57533048 | MS.gene55935:CDS |
| TGAAAATTTGTTAGAGAAAG+GGG | 0.423500 | 2.3:-57532115 | MS.gene55935:CDS |
| CTTGATGTTTCTAACATTCG+TGG | 0.428356 | 2.3:-57532387 | MS.gene55935:CDS |
| CTTGCAAATTCTTTCTAGTA+GGG | 0.435319 | 2.3:-57532628 | MS.gene55935:CDS |
| TTAGAAAACTATCCCTTGTC+TGG | 0.435794 | 2.3:-57533209 | MS.gene55935:CDS |
| AAGATTTGAGAGAAAATGGT+TGG | 0.440935 | 2.3:-57531753 | MS.gene55935:CDS |
| GAGAAAGGGGAGATTGTAAC+TGG | 0.444570 | 2.3:-57532102 | MS.gene55935:CDS |
| ACTATCGGCATCCGCACATT+GGG | 0.450426 | 2.3:+57531933 | None:intergenic |
| AAGAGCTGGAGATACTCGTT+GGG | 0.456838 | 2.3:-57532049 | MS.gene55935:CDS |
| CTCTTGTAAAATGAATAGAT+TGG | 0.458282 | 2.3:+57533482 | None:intergenic |
| CAAGTTTCTTGAAACCGCCT+TGG | 0.461332 | 2.3:+57533173 | None:intergenic |
| TTCTCTTGATGCAGTAACTA+AGG | 0.467018 | 2.3:+57532245 | None:intergenic |
| TTAAGATTTGTTGATAAAGC+TGG | 0.469474 | 2.3:-57532507 | MS.gene55935:CDS |
| GTTTCTAACATTCGTGGTCA+AGG | 0.476231 | 2.3:-57532381 | MS.gene55935:CDS |
| CATTTGATGAAAGAAATTAT+GGG | 0.484050 | 2.3:-57531868 | MS.gene55935:CDS |
| CAAATAATTGTAAGAACTAT+CGG | 0.484863 | 2.3:+57531918 | None:intergenic |
| TGTTCCTTTCTTAAACACAT+AGG | 0.490638 | 2.3:-57532987 | MS.gene55935:CDS |
| TGTGACCCGGGACGTCCGCT+TGG | 0.495154 | 2.3:+57533065 | None:intergenic |
| GGTTCAGCTTGTTTCCTGCA+TGG | 0.497661 | 2.3:-57533151 | MS.gene55935:CDS |
| GGAAGTGAATCAAGAAATCA+AGG | 0.500622 | 2.3:-57532768 | MS.gene55935:intron |
| GGGGAGATTGTAACTGGTAA+AGG | 0.502179 | 2.3:-57532096 | MS.gene55935:CDS |
| GTTCCTTTCTTAAACACATA+GGG | 0.504512 | 2.3:-57532986 | MS.gene55935:CDS |
| CAATGGACATAGTAAGCATA+AGG | 0.506152 | 2.3:+57532291 | None:intergenic |
| GCAATATCCACCGAATCAAA+AGG | 0.510046 | 2.3:-57533279 | MS.gene55935:CDS |
| TCACAAGTATTCATTTCTAC+GGG | 0.512610 | 2.3:-57533047 | MS.gene55935:CDS |
| GTTGGTACTGTGAAAAGAGC+TGG | 0.512717 | 2.3:-57532063 | MS.gene55935:CDS |
| AACTATCGGCATCCGCACAT+TGG | 0.513033 | 2.3:+57531932 | None:intergenic |
| GAATGACAATCATTGAGGTC+GGG | 0.520070 | 2.3:+57531676 | None:intergenic |
| AGATTTGAGAGAAAATGGTT+GGG | 0.528464 | 2.3:-57531752 | MS.gene55935:CDS |
| GGATAAGTTGTTTGCCAATG+TGG | 0.533128 | 2.3:-57531731 | MS.gene55935:CDS |
| TGAAGTTGCAAAAGTTGTGT+TGG | 0.536590 | 2.3:-57532703 | MS.gene55935:CDS |
| CTATTAACCTTTGAAGGACG+AGG | 0.536718 | 2.3:+57533365 | None:intergenic |
| ATGTTTCTGCTCACCAGACA+AGG | 0.539590 | 2.3:+57533196 | None:intergenic |
| GGTGAATATTCTAGCCATGC+AGG | 0.553261 | 2.3:+57533137 | None:intergenic |
| AAAGAGCTGGAGATACTCGT+TGG | 0.554126 | 2.3:-57532050 | MS.gene55935:CDS |
| CACGAATGTTAGAAACATCA+AGG | 0.558245 | 2.3:+57532388 | None:intergenic |
| GGTTGGAAGAATGTTAGGAA+TGG | 0.558511 | 2.3:-57533017 | MS.gene55935:CDS |
| GGGCAACTTGTAACTCATCA+TGG | 0.563344 | 2.3:+57532151 | None:intergenic |
| TTTCTAACATTCGTGGTCAA+GGG | 0.564642 | 2.3:-57532380 | MS.gene55935:CDS |
| AAATGAGCCTCGTCCTTCAA+AGG | 0.565758 | 2.3:-57533372 | MS.gene55935:CDS |
| TGAATGACAATCATTGAGGT+CGG | 0.569359 | 2.3:+57531675 | None:intergenic |
| CTAGCAATATGAGAGGAGAA+TGG | 0.576060 | 2.3:-57532347 | MS.gene55935:CDS |
| ATTTGATGAAAGAAATTATG+GGG | 0.578826 | 2.3:-57531867 | MS.gene55935:CDS |
| CTTTCTTAAACACATAGGGA+AGG | 0.579849 | 2.3:-57532982 | MS.gene55935:CDS |
| CTTCAATTGACACTGTTCGT+TGG | 0.588788 | 2.3:-57532830 | MS.gene55935:CDS |
| ACTCTTAAGGAAGCAGTATG+TGG | 0.603472 | 2.3:-57532429 | MS.gene55935:CDS |
| AAAGGTTAATAGAGTTAACC+CGG | 0.607223 | 2.3:-57533354 | MS.gene55935:CDS |
| GCATTGTTGTGTGGTGAGCA+AGG | 0.607377 | 2.3:+57532957 | None:intergenic |
| TTGTTGAATGACAATCATTG+AGG | 0.610715 | 2.3:+57531671 | None:intergenic |
| ATTCGTGGTCAAGGGTATGA+CGG | 0.610872 | 2.3:-57532372 | MS.gene55935:CDS |
| AGAAATGAATACTTGTGACC+CGG | 0.611587 | 2.3:+57533052 | None:intergenic |
| TCTTTCATTGCATTGTTGTG+TGG | 0.618149 | 2.3:+57532948 | None:intergenic |
| CGAAGAGCGTATCTAAAATG+GGG | 0.645227 | 2.3:-57533248 | MS.gene55935:CDS |
| GAAATGAATACTTGTGACCC+GGG | 0.651241 | 2.3:+57533053 | None:intergenic |
| GACGGTGCTAGCAATATGAG+AGG | 0.658664 | 2.3:-57532354 | MS.gene55935:CDS |
| CAATATGCAGCATCTTCCGA+CGG | 0.665118 | 2.3:+57533116 | None:intergenic |
| CTGGTGAGCAGAAACATCCA+AGG | 0.669250 | 2.3:-57533190 | MS.gene55935:CDS |
| ATGGCTAGAATATTCACCGT+CGG | 0.671966 | 2.3:-57533132 | MS.gene55935:CDS |
| GCAACCGATGAGCAAAACAA+TGG | 0.673078 | 2.3:+57532274 | None:intergenic |
| TGTTTCTGCTCACCAGACAA+GGG | 0.683629 | 2.3:+57533197 | None:intergenic |
| AATATGAGAGGAGAATGGAA+TGG | 0.688281 | 2.3:-57532342 | MS.gene55935:CDS |
| AGAGCTGGAGATACTCGTTG+GGG | 0.700667 | 2.3:-57532048 | MS.gene55935:CDS |
| GTGAGCAGAAACATCCAAGG+CGG | 0.760869 | 2.3:-57533187 | MS.gene55935:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAATATTATTTTATTT+TGG | + | chr2.3:57533364-57533383 | None:intergenic | 0.0% |
| !!! | ATTAAATATTATTTTATTTT+GGG | + | chr2.3:57533363-57533382 | None:intergenic | 0.0% |
| !!! | ATTTTGATCTTTTTTTAATA+TGG | - | chr2.3:57533381-57533400 | MS.gene55935:CDS | 10.0% |
| !!! | GTATTATTTATAAGTTTTTA+AGG | - | chr2.3:57533183-57533202 | MS.gene55935:CDS | 10.0% |
| !!! | TATATTTTAGTTTATTTTGA+TGG | - | chr2.3:57533021-57533040 | MS.gene55935:CDS | 10.0% |
| !! | ATAGCTTACTTAAATAAATA+AGG | + | chr2.3:57533277-57533296 | None:intergenic | 15.0% |
| !!! | AATTTTCAATTTCTTCTAAT+TGG | + | chr2.3:57531827-57531846 | None:intergenic | 15.0% |
| !!! | AATTTTGAATGATTAGTTTT+TGG | - | chr2.3:57532956-57532975 | MS.gene55935:CDS | 15.0% |
| !!! | ATTTTCAATTTCTTCTAATT+GGG | + | chr2.3:57531826-57531845 | None:intergenic | 15.0% |
| !!! | TTTTCTAATTTCATTTGATA+AGG | + | chr2.3:57530733-57530752 | None:intergenic | 15.0% |
| !! | ATAGTCTATTATTCAGAATT+TGG | + | chr2.3:57531095-57531114 | None:intergenic | 20.0% |
| !! | ATTTGATGAAAGAAATTATG+GGG | - | chr2.3:57532087-57532106 | MS.gene55935:CDS | 20.0% |
| !! | CAAATAATTGTAAGAACTAT+CGG | + | chr2.3:57532039-57532058 | None:intergenic | 20.0% |
| !! | CATTTGATGAAAGAAATTAT+GGG | - | chr2.3:57532086-57532105 | MS.gene55935:CDS | 20.0% |
| !!! | ATTGAAAATTTGTTAGAGAA+AGG | - | chr2.3:57531837-57531856 | MS.gene55935:CDS | 20.0% |
| !!! | GAAATATTTTTTGTTTTGTC+CGG | + | chr2.3:57532666-57532685 | None:intergenic | 20.0% |
| !!! | TTCATCTTTTTCAATATCAT+CGG | + | chr2.3:57530503-57530522 | None:intergenic | 20.0% |
| !!! | TTGAAAATTTGTTAGAGAAA+GGG | - | chr2.3:57531838-57531857 | MS.gene55935:CDS | 20.0% |
| ! | AAACATATTCGTGAAGAAAT+TGG | - | chr2.3:57531354-57531373 | MS.gene55935:intron | 25.0% |
| ! | AAAGAATTCTCAATGTATTC+CGG | + | chr2.3:57530622-57530641 | None:intergenic | 25.0% |
| ! | ATATCCCTTTCAATATAAAC+TGG | + | chr2.3:57532827-57532846 | None:intergenic | 25.0% |
| ! | ATTATACACATAATAAGCAG+TGG | + | chr2.3:57533086-57533105 | None:intergenic | 25.0% |
| ! | ATTCAAGATTTGAGAGAAAA+TGG | - | chr2.3:57532197-57532216 | MS.gene55935:CDS | 25.0% |
| ! | CTAAAATAAGCTAATCCAAA+CGG | + | chr2.3:57533122-57533141 | None:intergenic | 25.0% |
| ! | CTCTTGTAAAATGAATAGAT+TGG | + | chr2.3:57530475-57530494 | None:intergenic | 25.0% |
| ! | GCATTTGATGAAAGAAATTA+TGG | - | chr2.3:57532085-57532104 | MS.gene55935:CDS | 25.0% |
| ! | TAAAATAAGCTAATCCAAAC+GGG | + | chr2.3:57533121-57533140 | None:intergenic | 25.0% |
| ! | TATGCCAGTTTATATTGAAA+GGG | - | chr2.3:57532820-57532839 | MS.gene55935:CDS | 25.0% |
| ! | TGTTCAAAAATATTATCCCA+TGG | - | chr2.3:57532514-57532533 | MS.gene55935:CDS | 25.0% |
| ! | TTAACTCTATTAACCTTTGA+AGG | + | chr2.3:57530598-57530617 | None:intergenic | 25.0% |
| !! | AAGACTTTTTGAATCAAGAT+GGG | - | chr2.3:57531034-57531053 | MS.gene55935:intron | 25.0% |
| !! | CAATCTATTCATTTTACAAG+AGG | - | chr2.3:57530473-57530492 | MS.gene55935:intron | 25.0% |
| !!! | TGAAAATTTGTTAGAGAAAG+GGG | - | chr2.3:57531839-57531858 | MS.gene55935:CDS | 25.0% |
| !!! | TTAAGATTTGTTGATAAAGC+TGG | - | chr2.3:57531447-57531466 | MS.gene55935:intron | 25.0% |
| AAAAAAATTTGCCCAATGTG+CGG | - | chr2.3:57532010-57532029 | MS.gene55935:CDS | 30.0% | |
| AAAATAAGCTCAAACCAAAC+GGG | - | chr2.3:57533310-57533329 | MS.gene55935:CDS | 30.0% | |
| AAACTGGAAGAGTCATAATA+AGG | + | chr2.3:57532709-57532728 | None:intergenic | 30.0% | |
| AAAGGTTAATAGAGTTAACC+CGG | - | chr2.3:57530600-57530619 | MS.gene55935:intron | 30.0% | |
| AAGAATTCTCAATGTATTCC+GGG | + | chr2.3:57530621-57530640 | None:intergenic | 30.0% | |
| AAGATTTGAGAGAAAATGGT+TGG | - | chr2.3:57532201-57532220 | MS.gene55935:CDS | 30.0% | |
| AGATTTGAGAGAAAATGGTT+GGG | - | chr2.3:57532202-57532221 | MS.gene55935:CDS | 30.0% | |
| CAAAATAAGCTCAAACCAAA+CGG | - | chr2.3:57533309-57533328 | MS.gene55935:CDS | 30.0% | |
| CTCTTGTAATTGTTTGTCAA+TGG | + | chr2.3:57532387-57532406 | None:intergenic | 30.0% | |
| GTATGCCAGTTTATATTGAA+AGG | - | chr2.3:57532819-57532838 | MS.gene55935:CDS | 30.0% | |
| GTCACAAGTATTCATTTCTA+CGG | - | chr2.3:57530906-57530925 | MS.gene55935:intron | 30.0% | |
| GTCATTCAACAACAAGATTT+GGG | - | chr2.3:57532294-57532313 | MS.gene55935:CDS | 30.0% | |
| GTTCCTTTCTTAAACACATA+GGG | - | chr2.3:57530968-57530987 | MS.gene55935:intron | 30.0% | |
| TATTCATGAATGTTCAGTTG+AGG | - | chr2.3:57533485-57533504 | MS.gene55935:CDS | 30.0% | |
| TCACAAGTATTCATTTCTAC+GGG | - | chr2.3:57530907-57530926 | MS.gene55935:intron | 30.0% | |
| TCATGATCACTAAAATCCAT+GGG | + | chr2.3:57532533-57532552 | None:intergenic | 30.0% | |
| TGAAAAAGATCTTTCAGTTG+TGG | + | chr2.3:57532738-57532757 | None:intergenic | 30.0% | |
| TGAGTCAAAAAAGGAACAAA+TGG | - | chr2.3:57531416-57531435 | MS.gene55935:intron | 30.0% | |
| TGTCATTCAACAACAAGATT+TGG | - | chr2.3:57532293-57532312 | MS.gene55935:CDS | 30.0% | |
| TGTTCCTTTCTTAAACACAT+AGG | - | chr2.3:57530967-57530986 | MS.gene55935:intron | 30.0% | |
| TTAAAGGTTGGAAGAATGTT+AGG | - | chr2.3:57530932-57530951 | MS.gene55935:intron | 30.0% | |
| TTGTTGAATGACAATCATTG+AGG | + | chr2.3:57532286-57532305 | None:intergenic | 30.0% | |
| ! | AGCAGAGTAAGTCAATATTT+TGG | + | chr2.3:57533338-57533357 | None:intergenic | 30.0% |
| ! | CAAGACTTTTTGAATCAAGA+TGG | - | chr2.3:57531033-57531052 | MS.gene55935:intron | 30.0% |
| ! | CAGAGTAAGTCAATATTTTG+GGG | + | chr2.3:57533336-57533355 | None:intergenic | 30.0% |
| ! | CTATTCATTTTACAAGAGGA+AGG | - | chr2.3:57530477-57530496 | MS.gene55935:intron | 30.0% |
| ! | CTTGCAAATTCTTTCTAGTA+GGG | - | chr2.3:57531326-57531345 | MS.gene55935:intron | 30.0% |
| ! | GAAGTATACTTGCATTTTTC+TGG | + | chr2.3:57531285-57531304 | None:intergenic | 30.0% |
| ! | GCAGAGTAAGTCAATATTTT+GGG | + | chr2.3:57533337-57533356 | None:intergenic | 30.0% |
| ! | TCTAAGTTGAGAAACAAGAT+GGG | - | chr2.3:57532776-57532795 | MS.gene55935:CDS | 30.0% |
| ! | TCTTGCAAATTCTTTCTAGT+AGG | - | chr2.3:57531325-57531344 | MS.gene55935:intron | 30.0% |
| ! | TGTTGTTAATGCTATGCTTT+TGG | - | chr2.3:57532154-57532173 | MS.gene55935:CDS | 30.0% |
| ! | TTGTTACTTGATTCTCTTCA+AGG | + | chr2.3:57532328-57532347 | None:intergenic | 30.0% |
| !! | ACTTTTGTTGTCAATGTTGT+TGG | - | chr2.3:57531765-57531784 | MS.gene55935:CDS | 30.0% |
| !! | CGTATTTCATCCTTTTGATT+CGG | + | chr2.3:57530688-57530707 | None:intergenic | 30.0% |
| !! | TTCATTTCTACGGGTTTTAA+AGG | - | chr2.3:57530916-57530935 | MS.gene55935:intron | 30.0% |
| !!! | ACAAGAGAGATTTTTTGATG+TGG | - | chr2.3:57531476-57531495 | MS.gene55935:intron | 30.0% |
| !!! | ATATTTTTTGTTTTGTCCGG+TGG | + | chr2.3:57532663-57532682 | None:intergenic | 30.0% |
| AAAGCGTAAAGTGCATCTTT+AGG | - | chr2.3:57532898-57532917 | MS.gene55935:CDS | 35.0% | |
| AATATGAGAGGAGAATGGAA+TGG | - | chr2.3:57531612-57531631 | MS.gene55935:intron | 35.0% | |
| AGAAATGAATACTTGTGACC+CGG | + | chr2.3:57530905-57530924 | None:intergenic | 35.0% | |
| AGGAAAAGTCGAAGATCAAA+TGG | + | chr2.3:57532569-57532588 | None:intergenic | 35.0% | |
| ATAATCGACGAGCATCAAAA+AGG | + | chr2.3:57532589-57532608 | None:intergenic | 35.0% | |
| ATACACATAATAAGCAGTGG+CGG | + | chr2.3:57533083-57533102 | None:intergenic | 35.0% | |
| ATACTATCTGCTAAAAACCC+AGG | + | chr2.3:57532803-57532822 | None:intergenic | 35.0% | |
| ATCCTTGCAAAAACAATCTC+AGG | - | chr2.3:57532130-57532149 | MS.gene55935:CDS | 35.0% | |
| CAATGGACATAGTAAGCATA+AGG | + | chr2.3:57531666-57531685 | None:intergenic | 35.0% | |
| CACGAATGTTAGAAACATCA+AGG | + | chr2.3:57531569-57531588 | None:intergenic | 35.0% | |
| CACTTCTTCGTTAACTCTTA+AGG | - | chr2.3:57531512-57531531 | MS.gene55935:intron | 35.0% | |
| CTCATGATCACTAAAATCCA+TGG | + | chr2.3:57532534-57532553 | None:intergenic | 35.0% | |
| CTCTTTAGCAAAAAACCAAG+CGG | - | chr2.3:57530874-57530893 | MS.gene55935:intron | 35.0% | |
| CTTCCCTATGTGTTTAAGAA+AGG | + | chr2.3:57530974-57530993 | None:intergenic | 35.0% | |
| CTTTCTTAAACACATAGGGA+AGG | - | chr2.3:57530972-57530991 | MS.gene55935:intron | 35.0% | |
| GGAAGTGAATCAAGAAATCA+AGG | - | chr2.3:57531186-57531205 | MS.gene55935:intron | 35.0% | |
| GGTAAAGGTAAAAACCAAGT+TGG | - | chr2.3:57531873-57531892 | MS.gene55935:CDS | 35.0% | |
| TCTTTCATTGCATTGTTGTG+TGG | + | chr2.3:57531009-57531028 | None:intergenic | 35.0% | |
| TGAAGTTGCAAAAGTTGTGT+TGG | - | chr2.3:57531251-57531270 | MS.gene55935:intron | 35.0% | |
| TGAATGACAATCATTGAGGT+CGG | + | chr2.3:57532282-57532301 | None:intergenic | 35.0% | |
| TTAGAAAACTATCCCTTGTC+TGG | - | chr2.3:57530745-57530764 | MS.gene55935:intron | 35.0% | |
| TTCACAAAAAGACACCACAT+TGG | + | chr2.3:57532240-57532259 | None:intergenic | 35.0% | |
| TTCTCTTGATGCAGTAACTA+AGG | + | chr2.3:57531712-57531731 | None:intergenic | 35.0% | |
| TTTCTAACATTCGTGGTCAA+GGG | - | chr2.3:57531574-57531593 | MS.gene55935:intron | 35.0% | |
| ! | AAAGCTTTATATCCATCCTC+AGG | + | chr2.3:57532470-57532489 | None:intergenic | 35.0% |
| ! | ACGAAGAGCGTATCTAAAAT+GGG | - | chr2.3:57530705-57530724 | MS.gene55935:intron | 35.0% |
| ! | ACTTCAAGCTTGTGCTTTTA+GGG | - | chr2.3:57531152-57531171 | MS.gene55935:intron | 35.0% |
| ! | ATCGATGATTTCAAGTCACT+CGG | - | chr2.3:57532875-57532894 | MS.gene55935:CDS | 35.0% |
| ! | CTTGATGTTTCTAACATTCG+TGG | - | chr2.3:57531567-57531586 | MS.gene55935:intron | 35.0% |
| ! | GGCTCATTTTCTTCAATTCT+TGG | + | chr2.3:57530571-57530590 | None:intergenic | 35.0% |
| ! | GTCTAAGTTGAGAAACAAGA+TGG | - | chr2.3:57532775-57532794 | MS.gene55935:CDS | 35.0% |
| ! | TACGAAGAGCGTATCTAAAA+TGG | - | chr2.3:57530704-57530723 | MS.gene55935:intron | 35.0% |
| !! | AATTCTTTAGAACGTGATCC+TGG | - | chr2.3:57530634-57530653 | MS.gene55935:intron | 35.0% |
| !! | ATGTCCATTGTTTTGCTCAT+CGG | - | chr2.3:57531676-57531695 | MS.gene55935:CDS | 35.0% |
| !!! | ATCCTGAGATTGTTTTTGCA+AGG | + | chr2.3:57532135-57532154 | None:intergenic | 35.0% |
| !!! | ATTTCATCCTTTTGATTCGG+TGG | + | chr2.3:57530685-57530704 | None:intergenic | 35.0% |
| !!! | TTATTTTGATGGCGAGATAG+CGG | - | chr2.3:57533032-57533051 | MS.gene55935:CDS | 35.0% |
| !!! | TTTCTACGGGTTTTAAAGGT+TGG | - | chr2.3:57530920-57530939 | MS.gene55935:intron | 35.0% |
| ACTCTTAAGGAAGCAGTATG+TGG | - | chr2.3:57531525-57531544 | MS.gene55935:intron | 40.0% | |
| AGCTCGTGATGAGTCAAAAA+AGG | - | chr2.3:57531407-57531426 | MS.gene55935:intron | 40.0% | |
| ATGCATGTTATTGACCCGTT+TGG | - | chr2.3:57533104-57533123 | MS.gene55935:CDS | 40.0% | |
| ATGGCTAGAATATTCACCGT+CGG | - | chr2.3:57530822-57530841 | MS.gene55935:intron | 40.0% | |
| CAAATTGGAATACGCTTTCC+AGG | + | chr2.3:57530655-57530674 | None:intergenic | 40.0% | |
| CTAGCAATATGAGAGGAGAA+TGG | - | chr2.3:57531607-57531626 | MS.gene55935:intron | 40.0% | |
| CTTCAATTGACACTGTTCGT+TGG | - | chr2.3:57531124-57531143 | MS.gene55935:intron | 40.0% | |
| GAAATGAATACTTGTGACCC+GGG | + | chr2.3:57530904-57530923 | None:intergenic | 40.0% | |
| GAATGACAATCATTGAGGTC+GGG | + | chr2.3:57532281-57532300 | None:intergenic | 40.0% | |
| GAGCCAGACAAAAATGTTTG+GGG | + | chr2.3:57533061-57533080 | None:intergenic | 40.0% | |
| GCAATATCCACCGAATCAAA+AGG | - | chr2.3:57530675-57530694 | MS.gene55935:intron | 40.0% | |
| GGAGCCAGACAAAAATGTTT+GGG | + | chr2.3:57533062-57533081 | None:intergenic | 40.0% | |
| GGATAAGTTGTTTGCCAATG+TGG | - | chr2.3:57532223-57532242 | MS.gene55935:CDS | 40.0% | |
| GGTTGGAAGAATGTTAGGAA+TGG | - | chr2.3:57530937-57530956 | MS.gene55935:intron | 40.0% | |
| GTTTCTAACATTCGTGGTCA+AGG | - | chr2.3:57531573-57531592 | MS.gene55935:intron | 40.0% | |
| TAGTTGTTCTTTGTCTCCTG+AGG | - | chr2.3:57532451-57532470 | MS.gene55935:CDS | 40.0% | |
| TCAAGAGTTGTGCTCATGTT+TGG | - | chr2.3:57532634-57532653 | MS.gene55935:CDS | 40.0% | |
| TGAATCAAGATGGGCATCTT+AGG | - | chr2.3:57531043-57531062 | MS.gene55935:intron | 40.0% | |
| TTCGGTGGATATTGCCAAAT+TGG | + | chr2.3:57530670-57530689 | None:intergenic | 40.0% | |
| ! | CACTTCAAGCTTGTGCTTTT+AGG | - | chr2.3:57531151-57531170 | MS.gene55935:intron | 40.0% |
| ! | CGAAGAGCGTATCTAAAATG+GGG | - | chr2.3:57530706-57530725 | MS.gene55935:intron | 40.0% |
| ! | CTATTAACCTTTGAAGGACG+AGG | + | chr2.3:57530592-57530611 | None:intergenic | 40.0% |
| ! | CTCTTTTCACAGTACCAACT+TGG | + | chr2.3:57531890-57531909 | None:intergenic | 40.0% |
| ! | CTGGAAAGCGTATTCCAATT+TGG | - | chr2.3:57530653-57530672 | MS.gene55935:intron | 40.0% |
| ! | CTTCAAGCTTGTGCTTTTAG+GGG | - | chr2.3:57531153-57531172 | MS.gene55935:intron | 40.0% |
| ! | GGATTCTCACAAACTTGTTC+AGG | + | chr2.3:57530550-57530569 | None:intergenic | 40.0% |
| AAAGAGCTGGAGATACTCGT+TGG | - | chr2.3:57531904-57531923 | MS.gene55935:CDS | 45.0% | |
| AAATGAGCCTCGTCCTTCAA+AGG | - | chr2.3:57530582-57530601 | MS.gene55935:intron | 45.0% | |
| AAGAGCTGGAGATACTCGTT+GGG | - | chr2.3:57531905-57531924 | MS.gene55935:CDS | 45.0% | |
| CAAGGCGGTTTCAAGAAACT+TGG | - | chr2.3:57530782-57530801 | MS.gene55935:intron | 45.0% | |
| CAAGTTTCTTGAAACCGCCT+TGG | + | chr2.3:57530784-57530803 | None:intergenic | 45.0% | |
| CAATATGCAGCATCTTCCGA+CGG | + | chr2.3:57530841-57530860 | None:intergenic | 45.0% | |
| CCAGACAAAAATGTTTGGGG+TGG | + | chr2.3:57533058-57533077 | None:intergenic | 45.0% | |
| CGGAGCCAGACAAAAATGTT+TGG | + | chr2.3:57533063-57533082 | None:intergenic | 45.0% | |
| GAGAAAGGGGAGATTGTAAC+TGG | - | chr2.3:57531852-57531871 | MS.gene55935:CDS | 45.0% | |
| GCAACCGATGAGCAAAACAA+TGG | + | chr2.3:57531683-57531702 | None:intergenic | 45.0% | |
| GGGCAACTTGTAACTCATCA+TGG | + | chr2.3:57531806-57531825 | None:intergenic | 45.0% | |
| GGGGAGATTGTAACTGGTAA+AGG | - | chr2.3:57531858-57531877 | MS.gene55935:CDS | 45.0% | |
| GGTGAATATTCTAGCCATGC+AGG | + | chr2.3:57530820-57530839 | None:intergenic | 45.0% | |
| GTTGGTACTGTGAAAAGAGC+TGG | - | chr2.3:57531891-57531910 | MS.gene55935:CDS | 45.0% | |
| TCAGTTGTGGCTGTAGAAAC+TGG | + | chr2.3:57532725-57532744 | None:intergenic | 45.0% | |
| TGAGAAACAAGATGGGTCCT+GGG | - | chr2.3:57532783-57532802 | MS.gene55935:CDS | 45.0% | |
| TGTTCTTTGTCTCCTGAGGA+TGG | - | chr2.3:57532455-57532474 | MS.gene55935:CDS | 45.0% | |
| TTGAGAAACAAGATGGGTCC+TGG | - | chr2.3:57532782-57532801 | MS.gene55935:CDS | 45.0% | |
| ! | ATGTTTCTGCTCACCAGACA+AGG | + | chr2.3:57530761-57530780 | None:intergenic | 45.0% |
| ! | ATTCGTGGTCAAGGGTATGA+CGG | - | chr2.3:57531582-57531601 | MS.gene55935:intron | 45.0% |
| ! | CCACCCCAAACATTTTTGTC+TGG | - | chr2.3:57533055-57533074 | MS.gene55935:CDS | 45.0% |
| ! | TGTTTCTGCTCACCAGACAA+GGG | + | chr2.3:57530760-57530779 | None:intergenic | 45.0% |
| !!! | TCAATATTTTGGGGCCCGTT+TGG | + | chr2.3:57533327-57533346 | None:intergenic | 45.0% |
| !!! | TTAAATATTATTTTATTTTG+GGG | + | chr2.3:57533362-57533381 | None:intergenic | 5.0% |
| AAAAAACCAAGCGGACGTCC+CGG | - | chr2.3:57530883-57530902 | MS.gene55935:intron | 50.0% | |
| AACTATCGGCATCCGCACAT+TGG | + | chr2.3:57532025-57532044 | None:intergenic | 50.0% | |
| ACTATCGGCATCCGCACATT+GGG | + | chr2.3:57532024-57532043 | None:intergenic | 50.0% | |
| AGAGCTGGAGATACTCGTTG+GGG | - | chr2.3:57531906-57531925 | MS.gene55935:CDS | 50.0% | |
| CTGGTGAGCAGAAACATCCA+AGG | - | chr2.3:57530764-57530783 | MS.gene55935:intron | 50.0% | |
| GCATTGTTGTGTGGTGAGCA+AGG | + | chr2.3:57531000-57531019 | None:intergenic | 50.0% | |
| GTGAGCAGAAACATCCAAGG+CGG | - | chr2.3:57530767-57530786 | MS.gene55935:intron | 50.0% | |
| ! | GACGGTGCTAGCAATATGAG+AGG | - | chr2.3:57531600-57531619 | MS.gene55935:intron | 50.0% |
| ! | GGTTCAGCTTGTTTCCTGCA+TGG | - | chr2.3:57530803-57530822 | MS.gene55935:intron | 50.0% |
| ! | TGCTCATGTTTGGCTTCCAC+CGG | - | chr2.3:57532644-57532663 | MS.gene55935:CDS | 50.0% |
| !! | GCTTTTAGGGGTCACTGTGA+AGG | - | chr2.3:57531165-57531184 | MS.gene55935:intron | 50.0% |
| AAAAACCAAGCGGACGTCCC+GGG | - | chr2.3:57530884-57530903 | MS.gene55935:intron | 55.0% | |
| TGTGACCCGGGACGTCCGCT+TGG | + | chr2.3:57530892-57530911 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 57530448 | 57533528 | 57530448 | ID=MS.gene55935 |
| chr2.3 | mRNA | 57530448 | 57533528 | 57530448 | ID=MS.gene55935.t1;Parent=MS.gene55935 |
| chr2.3 | exon | 57532769 | 57533528 | 57532769 | ID=MS.gene55935.t1.exon1;Parent=MS.gene55935.t1 |
| chr2.3 | CDS | 57532769 | 57533528 | 57532769 | ID=cds.MS.gene55935.t1;Parent=MS.gene55935.t1 |
| chr2.3 | exon | 57531636 | 57532738 | 57531636 | ID=MS.gene55935.t1.exon2;Parent=MS.gene55935.t1 |
| chr2.3 | CDS | 57531636 | 57532738 | 57531636 | ID=cds.MS.gene55935.t1;Parent=MS.gene55935.t1 |
| chr2.3 | exon | 57530448 | 57530474 | 57530448 | ID=MS.gene55935.t1.exon3;Parent=MS.gene55935.t1 |
| chr2.3 | CDS | 57530448 | 57530474 | 57530448 | ID=cds.MS.gene55935.t1;Parent=MS.gene55935.t1 |
| Gene Sequence |
| Protein sequence |
