AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56020.t1 MTR_2g034680 99.057 318 3 0 1 318 1 318 0.0 656
MS.gene56020.t1 MTR_7g021640 72.436 312 83 2 5 316 11 319 7.20e-172 479
MS.gene56020.t1 MTR_1g105535 69.805 308 92 1 8 315 15 321 5.62e-167 467
MS.gene56020.t1 MTR_8g074350 40.476 252 138 6 56 307 80 319 1.97e-58 191
MS.gene56020.t1 MTR_3g118390 37.860 243 140 5 65 307 135 366 7.03e-53 178
MS.gene56020.t1 MTR_7g110780 39.370 254 142 7 56 308 36 278 1.99e-51 171
MS.gene56020.t1 MTR_8g074330 37.860 243 139 5 65 307 89 319 4.37e-51 172
MS.gene56020.t1 MTR_8g074335 34.553 246 136 5 62 307 88 308 8.11e-46 157
MS.gene56020.t1 MTR_5g064330 60.526 76 29 1 45 120 16 90 2.65e-25 97.8
MS.gene56020.t1 MTR_2g099470 30.705 241 122 8 62 301 86 282 2.16e-23 97.8
MS.gene56020.t1 MTR_2g099465 29.876 241 125 10 62 301 57 254 1.02e-21 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56020.t1 AT3G16920 80.139 287 57 0 21 307 57 343 0.0 509
MS.gene56020.t1 AT3G16920 80.139 287 57 0 21 307 33 319 0.0 507
MS.gene56020.t1 AT1G05850 70.684 307 88 2 7 313 12 316 9.95e-167 466
MS.gene56020.t1 AT1G05850 70.684 307 88 2 7 313 12 316 9.95e-167 466
MS.gene56020.t1 AT3G12500 39.370 254 139 6 56 307 86 326 5.41e-58 190
MS.gene56020.t1 AT1G02360 38.272 243 140 6 65 307 39 271 2.95e-50 168
MS.gene56020.t1 AT1G02360 38.272 243 140 6 65 307 85 317 8.27e-50 168
MS.gene56020.t1 AT1G02360 38.272 243 140 6 65 307 91 323 9.54e-50 168
MS.gene56020.t1 AT4G01700 37.037 243 143 6 65 307 47 279 4.30e-48 162
MS.gene56020.t1 AT2G43570 30.992 242 112 9 65 301 86 277 8.81e-25 101
MS.gene56020.t1 AT2G43590 30.672 238 114 11 65 301 77 264 2.90e-22 94.4
MS.gene56020.t1 AT3G54420 29.825 228 120 7 62 288 77 265 5.37e-22 94.0
MS.gene56020.t1 AT2G43610 29.960 247 121 10 55 301 87 281 2.23e-21 92.4
MS.gene56020.t1 AT2G43620 28.112 249 127 10 53 301 87 283 5.57e-20 88.6
MS.gene56020.t1 AT2G43580 28.571 224 116 8 65 288 78 257 1.60e-18 84.0
MS.gene56020.t1 AT2G43600 29.167 240 112 13 65 301 89 273 5.08e-15 74.3
MS.gene56020.t1 AT2G43600 29.167 240 112 13 65 301 110 294 6.62e-15 74.3
MS.gene56020.t1 AT1G56680 30.144 209 101 9 81 288 108 272 3.76e-14 72.0
MS.gene56020.t1 AT1G56680 30.144 209 101 9 81 288 131 295 4.55e-14 72.0

Find 74 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCACATGCTTCTGGATTT+TGG 0.066004 2.3:-56174779 MS.gene56020:CDS
GGTGGTTATGGGGTGGCTAC+TGG 0.204419 2.3:-56173362 MS.gene56020:CDS
CCTCTTGGATTTGGTACTTC+TGG 0.205257 2.3:-56174717 MS.gene56020:CDS
CTTTATTACCTTGATTTATT+AGG 0.217041 2.3:-56172744 MS.gene56020:CDS
TCGAGAACAAATTCTCAAAT+TGG 0.234101 2.3:+56174817 None:intergenic
AATATTGTTTCAGGTGGTTA+TGG 0.269978 2.3:-56173374 MS.gene56020:intron
GATCCAACGGCACATGCTTC+TGG 0.270290 2.3:-56174786 MS.gene56020:CDS
CTTTATGAGCCTCTTGGATT+TGG 0.284586 2.3:-56174726 MS.gene56020:CDS
TCCAAAAGGGTACCTGGATT+TGG 0.330784 2.3:-56172852 MS.gene56020:CDS
GTGGTTATGGGGTGGCTACT+GGG 0.358281 2.3:-56173361 MS.gene56020:CDS
TGGTTATGGGGTGGCTACTG+GGG 0.370044 2.3:-56173360 MS.gene56020:CDS
ACCAAATCCAGGTACCCTTT+TGG 0.377427 2.3:+56172851 None:intergenic
GCTGCACTTTATGAGCCTCT+TGG 0.400754 2.3:-56174732 MS.gene56020:CDS
GTGGTGCCATACCGATTTAT+TGG 0.403583 2.3:-56173223 MS.gene56020:intron
AAAATGACACATTGTCCAAA+AGG 0.404045 2.3:-56172866 MS.gene56020:CDS
GCACAAGAGAGAATTTCATT+AGG 0.411754 2.3:+56172699 None:intergenic
ATGGGGCTTATGCTACAATA+AGG 0.414258 2.3:-56173327 MS.gene56020:CDS
TGGCCTTCCAAGCAGCACTA+TGG 0.414638 2.3:-56172962 MS.gene56020:CDS
TCCAAGCAGCACTATGGAAA+TGG 0.416055 2.3:-56172956 MS.gene56020:CDS
GGTTATGGGGTGGCTACTGG+GGG 0.424621 2.3:-56173359 MS.gene56020:CDS
CTTGGATTTGGTACTTCTGG+TGG 0.426651 2.3:-56174714 MS.gene56020:CDS
ATATTGTTTCAGGTGGTTAT+GGG 0.429063 2.3:-56173373 MS.gene56020:intron
AAATATGAATACCAATAAAT+CGG 0.435970 2.3:+56173212 None:intergenic
ATTGCAACAATATTAGTGAT+AGG 0.439273 2.3:-56174972 MS.gene56020:CDS
GTTTAATAGATCCACTTTCA+AGG 0.461556 2.3:+56173016 None:intergenic
AGTCCTGGTGCAGCATACTA+TGG 0.462195 2.3:-56173248 MS.gene56020:CDS
CTTCAAGTTGTTGAAGAAGA+AGG 0.464618 2.3:+56172645 None:intergenic
TTGAGAATTTGTTCTCGAAA+CGG 0.470513 2.3:-56174812 MS.gene56020:CDS
CCATTGGTGAAAACAGTAAA+GGG 0.473968 2.3:-56174927 MS.gene56020:CDS
TACCTTGATTTATTAGGAGT+TGG 0.479087 2.3:-56172738 MS.gene56020:CDS
TTTGTTCTATGTATTCTGGA+TGG 0.487919 2.3:+56172994 None:intergenic
TCATCACAATAGAATTGATC+AGG 0.492401 2.3:+56173296 None:intergenic
TTTCCATAGTGCTGCTTGGA+AGG 0.495382 2.3:+56172959 None:intergenic
TCCATTTCCATAGTGCTGCT+TGG 0.499368 2.3:+56172955 None:intergenic
TACCAACTCCTAATAAATCA+AGG 0.502150 2.3:+56172736 None:intergenic
GCCATTGGTGAAAACAGTAA+AGG 0.508561 2.3:-56174928 MS.gene56020:CDS
TAGCATAAGCCCCATGCAAA+GGG 0.509206 2.3:+56173335 None:intergenic
TTTATTGTGGCACCAAATCC+AGG 0.511197 2.3:+56172840 None:intergenic
TTGCTTCATTATCAGAACCT+TGG 0.516239 2.3:+56172790 None:intergenic
TATCACTAATATTGTTGCAA+TGG 0.516493 2.3:+56174974 None:intergenic
TATTGTTTCAGGTGGTTATG+GGG 0.516864 2.3:-56173372 MS.gene56020:intron
ACATTGTCCAAAAGGGTACC+TGG 0.530667 2.3:-56172858 MS.gene56020:CDS
TTAACCTATCCATGTAGTCC+TGG 0.535696 2.3:-56173263 MS.gene56020:CDS
AAATGACACATTGTCCAAAA+GGG 0.536961 2.3:-56172865 MS.gene56020:CDS
ATTAGGAGTTGGTAGAGAAG+AGG 0.537611 2.3:-56172727 MS.gene56020:CDS
TATGCTGCACCAGGACTACA+TGG 0.539685 2.3:+56173254 None:intergenic
TGTTTCAGGTGGTTATGGGG+TGG 0.542192 2.3:-56173369 MS.gene56020:intron
CATAGAACAAAATGCAACAT+TGG 0.544956 2.3:-56172982 MS.gene56020:CDS
TGAATACCAATAAATCGGTA+TGG 0.548692 2.3:+56173217 None:intergenic
GGAAAGAAACTATGTGACAA+AGG 0.557916 2.3:-56174906 MS.gene56020:CDS
ACCATATAAAACATTTATTG+TGG 0.559699 2.3:+56172827 None:intergenic
AATTGGAGAAGCCTTGAAAG+TGG 0.562081 2.3:-56173027 MS.gene56020:CDS
CGGCCATAGTATGCTGCACC+AGG 0.566654 2.3:+56173245 None:intergenic
AGAAACTATGTGACAAAGGG+TGG 0.568667 2.3:-56174902 MS.gene56020:CDS
GAAAGAAACTATGTGACAAA+GGG 0.573194 2.3:-56174905 MS.gene56020:CDS
GGTGCAGCATACTATGGCCG+TGG 0.575805 2.3:-56173242 MS.gene56020:CDS
CAAGTTGTTGAAGAAGAAGG+TGG 0.578516 2.3:+56172648 None:intergenic
GGTACTTCTGGTGGAAAGCA+TGG 0.578987 2.3:-56174705 MS.gene56020:CDS
GAAGAAGAAGGTGGGCCAGT+AGG 0.582375 2.3:+56172657 None:intergenic
AATCCAGAAGCATGTGCCGT+TGG 0.586749 2.3:+56174783 None:intergenic
GGTGATCAAGTTTGTGACCA+AGG 0.587507 2.3:-56172807 MS.gene56020:CDS
GTAGCATAAGCCCCATGCAA+AGG 0.591881 2.3:+56173334 None:intergenic
GGAGTTGGTAGAGAAGAGGC+AGG 0.599089 2.3:-56172723 MS.gene56020:CDS
AAAGCATGGTGGTCAGAAAG+AGG 0.601879 2.3:-56174691 MS.gene56020:CDS
GAAACTATGTGACAAAGGGT+GGG 0.610521 2.3:-56174901 MS.gene56020:CDS
AAGTTGTTGAAGAAGAAGGT+GGG 0.617415 2.3:+56172649 None:intergenic
ACAAACATCAGTGAAGCCAT+TGG 0.621601 2.3:-56174943 MS.gene56020:CDS
AAGGGTGGGAATGTAAAGGT+TGG 0.625286 2.3:-56174887 MS.gene56020:CDS
CTCGAAACGGAATGATCCAA+CGG 0.641016 2.3:-56174799 MS.gene56020:CDS
GACAAAGGGTGGGAATGTAA+AGG 0.668253 2.3:-56174891 MS.gene56020:CDS
TGCACCAGGACTACATGGAT+AGG 0.675927 2.3:+56173259 None:intergenic
AATAAATCGGTATGGCACCA+CGG 0.689745 2.3:+56173225 None:intergenic
CCAGAAGTACCAAATCCAAG+AGG 0.703394 2.3:+56174717 None:intergenic
ACTTCTGGTGGAAAGCATGG+TGG 0.730500 2.3:-56174702 MS.gene56020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATGAATACCAATAAAT+CGG + chr2.3:56174443-56174462 None:intergenic 15.0%
!! AATATAATAACAACATAGAT+TGG - chr2.3:56173670-56173689 MS.gene56020:intron 15.0%
!! GGAAAAATAATGAATTATAT+AGG - chr2.3:56174179-56174198 MS.gene56020:intron 15.0%
!!! TTTAAGATGATAAAATTGTA+AGG - chr2.3:56174248-56174267 MS.gene56020:intron 15.0%
!! AACTCATGGTAAAAAATTAT+AGG + chr2.3:56173968-56173987 None:intergenic 20.0%
!! AATTACAACTATGGAAAAAT+TGG - chr2.3:56174608-56174627 MS.gene56020:intron 20.0%
!! ACCATATAAAACATTTATTG+TGG + chr2.3:56174828-56174847 None:intergenic 20.0%
!! ACTCATGGTAAAAAATTATA+GGG + chr2.3:56173967-56173986 None:intergenic 20.0%
!! ATAAAATGATCAATTCATGT+GGG - chr2.3:56173076-56173095 MS.gene56020:intron 20.0%
!! ATACAGTAAAATTTCAAACT+TGG - chr2.3:56173314-56173333 MS.gene56020:CDS 20.0%
!! CTTTATTACCTTGATTTATT+AGG - chr2.3:56174908-56174927 MS.gene56020:CDS 20.0%
!! TAATAGAAAAAATGTCCATT+TGG + chr2.3:56172657-56172676 None:intergenic 20.0%
!! TATAAAATGATCAATTCATG+TGG - chr2.3:56173075-56173094 MS.gene56020:intron 20.0%
!!! TTTCTTGATCTTATGTTTTT+TGG - chr2.3:56173170-56173189 MS.gene56020:intron 20.0%
! AAAAACAGGAATTACAACTA+TGG - chr2.3:56174599-56174618 MS.gene56020:intron 25.0%
! ATGTTGTTAGATTATTAGAG+TGG - chr2.3:56174213-56174232 MS.gene56020:intron 25.0%
! ATTGCAACAATATTAGTGAT+AGG - chr2.3:56172680-56172699 MS.gene56020:CDS 25.0%
! TAAAATGATCAATTCATGTG+GGG - chr2.3:56173077-56173096 MS.gene56020:intron 25.0%
! TATCACTAATATTGTTGCAA+TGG + chr2.3:56172681-56172700 None:intergenic 25.0%
!! ACCAAACAACTTCAAATTTT+TGG - chr2.3:56174117-56174136 MS.gene56020:intron 25.0%
!! GCCACAATAAATGTTTTATA+TGG - chr2.3:56174824-56174843 MS.gene56020:CDS 25.0%
!! TATATGTTAGCTAACTTGTA+TGG - chr2.3:56174061-56174080 MS.gene56020:intron 25.0%
!! TCCAAAAATTTGAAGTTGTT+TGG + chr2.3:56174121-56174140 None:intergenic 25.0%
!!! AAGAACAGTTTTTTAGAGAA+TGG - chr2.3:56173608-56173627 MS.gene56020:intron 25.0%
!!! ATGATGTTTTTGTTGGAAAT+TGG - chr2.3:56174753-56174772 MS.gene56020:CDS 25.0%
!!! GTTGTAATTCCTGTTTTTAA+AGG + chr2.3:56174597-56174616 None:intergenic 25.0%
!!! TTTTTTACCATGAGTTGTAT+AGG - chr2.3:56173972-56173991 MS.gene56020:intron 25.0%
AAAATGACACATTGTCCAAA+AGG - chr2.3:56174786-56174805 MS.gene56020:CDS 30.0%
AAAATGATCAATTCATGTGG+GGG - chr2.3:56173078-56173097 MS.gene56020:intron 30.0%
AAACAAGTAATGAGTCTCAA+TGG + chr2.3:56174516-56174535 None:intergenic 30.0%
AAATGACACATTGTCCAAAA+GGG - chr2.3:56174787-56174806 MS.gene56020:CDS 30.0%
AACATGATCAATTCATGTAG+GGG - chr2.3:56173135-56173154 MS.gene56020:intron 30.0%
AACTCAAAAATTGTATTGGG+GGG + chr2.3:56173740-56173759 None:intergenic 30.0%
AATAAAAAATCCCCCTCATT+TGG + chr2.3:56173766-56173785 None:intergenic 30.0%
AGAACATGATCAATTCATGT+AGG - chr2.3:56173133-56173152 MS.gene56020:intron 30.0%
ATAAAAAATCCCCCTCATTT+GGG + chr2.3:56173765-56173784 None:intergenic 30.0%
ATTGAATTGTGACTTACAAG+AGG + chr2.3:56173020-56173039 None:intergenic 30.0%
CATAGAACAAAATGCAACAT+TGG - chr2.3:56174670-56174689 MS.gene56020:CDS 30.0%
GAAAGAAACTATGTGACAAA+GGG - chr2.3:56172747-56172766 MS.gene56020:CDS 30.0%
GAACATGATCAATTCATGTA+GGG - chr2.3:56173134-56173153 MS.gene56020:intron 30.0%
GAACTCAAAAATTGTATTGG+GGG + chr2.3:56173741-56173760 None:intergenic 30.0%
GGAACTCAAAAATTGTATTG+GGG + chr2.3:56173742-56173761 None:intergenic 30.0%
GGGAACTCAAAAATTGTATT+GGG + chr2.3:56173743-56173762 None:intergenic 30.0%
GGTTCTTGAAATATTGTTTC+AGG - chr2.3:56174269-56174288 MS.gene56020:intron 30.0%
GTCAAATATCATGCAATTGA+GGG + chr2.3:56173205-56173224 None:intergenic 30.0%
GTTTAATAGATCCACTTTCA+AGG + chr2.3:56174639-56174658 None:intergenic 30.0%
TACCAACTCCTAATAAATCA+AGG + chr2.3:56174919-56174938 None:intergenic 30.0%
TACCTTGATTTATTAGGAGT+TGG - chr2.3:56174914-56174933 MS.gene56020:CDS 30.0%
TCATCACAATAGAATTGATC+AGG + chr2.3:56174359-56174378 None:intergenic 30.0%
TCCTAAACAAAAACCAAGTT+TGG + chr2.3:56174162-56174181 None:intergenic 30.0%
TCGAGAACAAATTCTCAAAT+TGG + chr2.3:56172838-56172857 None:intergenic 30.0%
TCTTGAAATATTGTTTCAGG+TGG - chr2.3:56174272-56174291 MS.gene56020:intron 30.0%
TGAATACCAATAAATCGGTA+TGG + chr2.3:56174438-56174457 None:intergenic 30.0%
TGGAAGAAATAGAAGACATT+GGG + chr2.3:56173823-56173842 None:intergenic 30.0%
TGTCAAATATCATGCAATTG+AGG + chr2.3:56173206-56173225 None:intergenic 30.0%
TTTCCAACAAAAACATCATG+TGG + chr2.3:56174752-56174771 None:intergenic 30.0%
TTTGTTCTATGTATTCTGGA+TGG + chr2.3:56174661-56174680 None:intergenic 30.0%
! AATATTGTTTCAGGTGGTTA+TGG - chr2.3:56174278-56174297 MS.gene56020:intron 30.0%
! ATATTGTTTCAGGTGGTTAT+GGG - chr2.3:56174279-56174298 MS.gene56020:intron 30.0%
! GCATTTTGTTCTATGTATTC+TGG + chr2.3:56174665-56174684 None:intergenic 30.0%
! TTCTTGATGCCTTTAAAAAC+AGG - chr2.3:56174585-56174604 MS.gene56020:intron 30.0%
! TTGAGAATTTGTTCTCGAAA+CGG - chr2.3:56172840-56172859 MS.gene56020:CDS 30.0%
!! ACCAAACTTGGTTTTTGTTT+AGG - chr2.3:56174158-56174177 MS.gene56020:intron 30.0%
!!! GACAATGTGTCATTTTTTGT+TGG + chr2.3:56174782-56174801 None:intergenic 30.0%
AAGAAATAGAAGACATTGGG+AGG + chr2.3:56173820-56173839 None:intergenic 35.0%
AAGTTGTTGAAGAAGAAGGT+GGG + chr2.3:56175006-56175025 None:intergenic 35.0%
ACAAAAACATCATGTGGTGA+AGG + chr2.3:56174746-56174765 None:intergenic 35.0%
ATGTGTGTGTGTTGAGATAT+GGG + chr2.3:56173444-56173463 None:intergenic 35.0%
ATTCATGTAGGGGAAAAGTT+AGG - chr2.3:56173145-56173164 MS.gene56020:intron 35.0%
CCATTGGTGAAAACAGTAAA+GGG - chr2.3:56172725-56172744 MS.gene56020:CDS 35.0%
GCACAAGAGAGAATTTCATT+AGG + chr2.3:56174956-56174975 None:intergenic 35.0%
GCATCAAGAAAGACAACATA+AGG + chr2.3:56174575-56174594 None:intergenic 35.0%
GGAAAGAAACTATGTGACAA+AGG - chr2.3:56172746-56172765 MS.gene56020:CDS 35.0%
GGGGAACTCAAAAATTGTAT+TGG + chr2.3:56173744-56173763 None:intergenic 35.0%
GTGGAAGAAATAGAAGACAT+TGG + chr2.3:56173824-56173843 None:intergenic 35.0%
TAAAAAATCCCCCTCATTTG+GGG + chr2.3:56173764-56173783 None:intergenic 35.0%
TATGTGTGTGTGTTGAGATA+TGG + chr2.3:56173445-56173464 None:intergenic 35.0%
TTGCTTCATTATCAGAACCT+TGG + chr2.3:56174865-56174884 None:intergenic 35.0%
! GTTTTGTCCTATACAACTCA+TGG + chr2.3:56173982-56174001 None:intergenic 35.0%
! TATTGTTTCAGGTGGTTATG+GGG - chr2.3:56174280-56174299 MS.gene56020:intron 35.0%
!! AAAACCTAAGTGCTGAAAAG+TGG - chr2.3:56173900-56173919 MS.gene56020:intron 35.0%
!! TCACCACATGATGTTTTTGT+TGG - chr2.3:56174746-56174765 MS.gene56020:CDS 35.0%
!!! GAGGGTTTTGGAAAAAAAGA+AGG + chr2.3:56173852-56173871 None:intergenic 35.0%
!!! GTTGAGATATGGGTTTTTTG+TGG + chr2.3:56173434-56173453 None:intergenic 35.0%
!!! TCAGCACTTAGGTTTTGTTT+GGG + chr2.3:56173896-56173915 None:intergenic 35.0%
!!! TTAGGTTTTGTTTGGGAGTT+TGG + chr2.3:56173889-56173908 None:intergenic 35.0%
!!! TTCAGCACTTAGGTTTTGTT+TGG + chr2.3:56173897-56173916 None:intergenic 35.0%
AAAAAATCCCCCTCATTTGG+GGG + chr2.3:56173763-56173782 None:intergenic 40.0%
AATAAATCGGTATGGCACCA+CGG + chr2.3:56174430-56174449 None:intergenic 40.0%
AATTGGAGAAGCCTTGAAAG+TGG - chr2.3:56174625-56174644 MS.gene56020:intron 40.0%
ACAAACATCAGTGAAGCCAT+TGG - chr2.3:56172709-56172728 MS.gene56020:CDS 40.0%
AGAAACTATGTGACAAAGGG+TGG - chr2.3:56172750-56172769 MS.gene56020:CDS 40.0%
ATGGGGCTTATGCTACAATA+AGG - chr2.3:56174325-56174344 MS.gene56020:intron 40.0%
CAAAAATTGTATTGGGGGGA+GGG + chr2.3:56173736-56173755 None:intergenic 40.0%
CAAGTTGTTGAAGAAGAAGG+TGG + chr2.3:56175007-56175026 None:intergenic 40.0%
CTTTATGAGCCTCTTGGATT+TGG - chr2.3:56172926-56172945 MS.gene56020:CDS 40.0%
GAAACTATGTGACAAAGGGT+GGG - chr2.3:56172751-56172770 MS.gene56020:CDS 40.0%
GCCATTGGTGAAAACAGTAA+AGG - chr2.3:56172724-56172743 MS.gene56020:CDS 40.0%
GGAAAAAAAGAAGGAGCAAG+TGG + chr2.3:56173843-56173862 None:intergenic 40.0%
GTCAGGACATCGATAATCAT+TGG + chr2.3:56173388-56173407 None:intergenic 40.0%
TAATGAGTCTCAATGGAACG+TGG + chr2.3:56174509-56174528 None:intergenic 40.0%
TAGCGCTTATACACCAAACT+TGG - chr2.3:56174146-56174165 MS.gene56020:intron 40.0%
TCAAAAATTGTATTGGGGGG+AGG + chr2.3:56173737-56173756 None:intergenic 40.0%
TTAACCTATCCATGTAGTCC+TGG - chr2.3:56174389-56174408 MS.gene56020:intron 40.0%
TTCCGTTGTAAAGAGTCAAG+CGG - chr2.3:56173477-56173496 MS.gene56020:intron 40.0%
TTTATTGTGGCACCAAATCC+AGG + chr2.3:56174815-56174834 None:intergenic 40.0%
TTTCAGTCATTCACGTAGTC+AGG + chr2.3:56173405-56173424 None:intergenic 40.0%
! CCCTTTACTGTTTTCACCAA+TGG + chr2.3:56172728-56172747 None:intergenic 40.0%
!! ATTAGGAGTTGGTAGAGAAG+AGG - chr2.3:56174925-56174944 MS.gene56020:CDS 40.0%
!! CACACACTAAGGCTTTGTTT+GGG - chr2.3:56173505-56173524 MS.gene56020:intron 40.0%
!! GAAGGTATGTGTTTTTCTGG+TGG + chr2.3:56174728-56174747 None:intergenic 40.0%
!! GGTGAAGGTATGTGTTTTTC+TGG + chr2.3:56174731-56174750 None:intergenic 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - chr2.3:56173512-56173531 MS.gene56020:intron 40.0%
!! TCACACACTAAGGCTTTGTT+TGG - chr2.3:56173504-56173523 MS.gene56020:intron 40.0%
!! TTCTCCACTTTTCAGCACTT+AGG + chr2.3:56173907-56173926 None:intergenic 40.0%
!! TTTTGTTTGGGAGTTTGGAG+GGG + chr2.3:56173884-56173903 None:intergenic 40.0%
!!! AAAGAGGTTGCTGCTTTTCT+TGG - chr2.3:56172977-56172996 MS.gene56020:CDS 40.0%
!!! CAAGCTGCTTTTAAACCTAC+TGG - chr2.3:56174980-56174999 MS.gene56020:CDS 40.0%
!!! GTTTTGTTTGGGAGTTTGGA+GGG + chr2.3:56173885-56173904 None:intergenic 40.0%
!!! TTTTGAGTTCCCCCAAATGA+GGG - chr2.3:56173751-56173770 MS.gene56020:intron 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG - chr2.3:56173750-56173769 MS.gene56020:intron 40.0%
AAAGCATGGTGGTCAGAAAG+AGG - chr2.3:56172961-56172980 MS.gene56020:CDS 45.0%
AAGGGTGGGAATGTAAAGGT+TGG - chr2.3:56172765-56172784 MS.gene56020:CDS 45.0%
ATAGAAGACATTGGGAGGAG+AGG + chr2.3:56173815-56173834 None:intergenic 45.0%
CTCGAAACGGAATGATCCAA+CGG - chr2.3:56172853-56172872 MS.gene56020:CDS 45.0%
GACAAAGGGTGGGAATGTAA+AGG - chr2.3:56172761-56172780 MS.gene56020:CDS 45.0%
GGTGATCAAGTTTGTGACCA+AGG - chr2.3:56174845-56174864 MS.gene56020:CDS 45.0%
TAGAAGACATTGGGAGGAGA+GGG + chr2.3:56173814-56173833 None:intergenic 45.0%
TAGCATAAGCCCCATGCAAA+GGG + chr2.3:56174320-56174339 None:intergenic 45.0%
TCCAAGCAGCACTATGGAAA+TGG - chr2.3:56174696-56174715 MS.gene56020:CDS 45.0%
! ACCAAATCCAGGTACCCTTT+TGG + chr2.3:56174804-56174823 None:intergenic 45.0%
! CCTCTTGGATTTGGTACTTC+TGG - chr2.3:56172935-56172954 MS.gene56020:CDS 45.0%
! CTTGGATTTGGTACTTCTGG+TGG - chr2.3:56172938-56172957 MS.gene56020:CDS 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr2.3:56173517-56173536 MS.gene56020:intron 45.0%
! GGCACATGCTTCTGGATTTT+GGG - chr2.3:56172874-56172893 MS.gene56020:CDS 45.0%
! TCCATTTCCATAGTGCTGCT+TGG + chr2.3:56174700-56174719 None:intergenic 45.0%
! TTTGAGTTCCCCCAAATGAG+GGG - chr2.3:56173752-56173771 MS.gene56020:intron 45.0%
!! ACATTGTCCAAAAGGGTACC+TGG - chr2.3:56174794-56174813 MS.gene56020:CDS 45.0%
!! CCAGAAGTACCAAATCCAAG+AGG + chr2.3:56172938-56172957 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr2.3:56173516-56173535 MS.gene56020:intron 45.0%
!! GTGGTGCCATACCGATTTAT+TGG - chr2.3:56174429-56174448 MS.gene56020:intron 45.0%
!! TCCAAAAGGGTACCTGGATT+TGG - chr2.3:56174800-56174819 MS.gene56020:CDS 45.0%
!! TTTCCATAGTGCTGCTTGGA+AGG + chr2.3:56174696-56174715 None:intergenic 45.0%
!!! GCTGCTTTTCTTGGTCATGT+TGG - chr2.3:56172986-56173005 MS.gene56020:CDS 45.0%
!!! GGTTTTGTTTGGGAGTTTGG+AGG + chr2.3:56173886-56173905 None:intergenic 45.0%
AGTCCTGGTGCAGCATACTA+TGG - chr2.3:56174404-56174423 MS.gene56020:intron 50.0%
CGCCGCTTGACTCTTTACAA+CGG + chr2.3:56173482-56173501 None:intergenic 50.0%
GCTGCACTTTATGAGCCTCT+TGG - chr2.3:56172920-56172939 MS.gene56020:CDS 50.0%
GGTACTTCTGGTGGAAAGCA+TGG - chr2.3:56172947-56172966 MS.gene56020:CDS 50.0%
GTAGCATAAGCCCCATGCAA+AGG + chr2.3:56174321-56174340 None:intergenic 50.0%
TATGCTGCACCAGGACTACA+TGG + chr2.3:56174401-56174420 None:intergenic 50.0%
TGCACCAGGACTACATGGAT+AGG + chr2.3:56174396-56174415 None:intergenic 50.0%
TTGAGTTCCCCCAAATGAGG+GGG - chr2.3:56173753-56173772 MS.gene56020:intron 50.0%
TTTGGGAGTTTGGAGGGGAA+GGG - chr2.3:56173522-56173541 MS.gene56020:intron 50.0%
! AATCCAGAAGCATGTGCCGT+TGG + chr2.3:56172872-56172891 None:intergenic 50.0%
! ACTTCTGGTGGAAAGCATGG+TGG - chr2.3:56172950-56172969 MS.gene56020:CDS 50.0%
! CGGCACATGCTTCTGGATTT+TGG - chr2.3:56172873-56172892 MS.gene56020:CDS 50.0%
! TGTATTGGGGGGAGGGTTTT+GGG + chr2.3:56173729-56173748 None:intergenic 50.0%
! TGTTTCAGGTGGTTATGGGG+TGG - chr2.3:56174283-56174302 MS.gene56020:intron 50.0%
! TTGTATTGGGGGGAGGGTTT+TGG + chr2.3:56173730-56173749 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr2.3:56173515-56173534 MS.gene56020:intron 50.0%
AAGCGGCGTCTCACACACTA+AGG - chr2.3:56173494-56173513 MS.gene56020:intron 55.0%
ACATTGGGAGGAGAGGGCTT+TGG + chr2.3:56173808-56173827 None:intergenic 55.0%
GAAGAAGAAGGTGGGCCAGT+AGG + chr2.3:56174998-56175017 None:intergenic 55.0%
GATCCAACGGCACATGCTTC+TGG - chr2.3:56172866-56172885 MS.gene56020:CDS 55.0%
GTGGTTATGGGGTGGCTACT+GGG - chr2.3:56174291-56174310 MS.gene56020:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+AGG - chr2.3:56173521-56173540 MS.gene56020:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG + chr2.3:56173540-56173521 None:intergenic 55.0%
TACTGGGGGACCCTTTGCAT+GGG - chr2.3:56174307-56174326 MS.gene56020:intron 55.0%
TGGCCTTCCAAGCAGCACTA+TGG - chr2.3:56174690-56174709 MS.gene56020:CDS 55.0%
TGGTTATGGGGTGGCTACTG+GGG - chr2.3:56174292-56174311 MS.gene56020:intron 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG + chr2.3:56173539-56173520 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG + chr2.3:56173879-56173898 None:intergenic 55.0%
! GTATTGGGGGGAGGGTTTTG+GGG + chr2.3:56173728-56173747 None:intergenic 55.0%
!! GGAGTTGGTAGAGAAGAGGC+AGG - chr2.3:56174929-56174948 MS.gene56020:CDS 55.0%
!! TATTGGGGGGAGGGTTTTGG+GGG + chr2.3:56173727-56173746 None:intergenic 55.0%
!!! AGGGTTTTGGGGGGTTATGG+AGG + chr2.3:56173717-56173736 None:intergenic 55.0%
!!! GGGTTTTGGGGGGTTATGGA+GGG + chr2.3:56173716-56173735 None:intergenic 55.0%
ACTGGGGGACCCTTTGCATG+GGG - chr2.3:56174308-56174327 MS.gene56020:intron 60.0%
CGGCCATAGTATGCTGCACC+AGG + chr2.3:56174410-56174429 None:intergenic 60.0%
CTACTGGGGGACCCTTTGCA+TGG - chr2.3:56174306-56174325 MS.gene56020:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG - chr2.3:56173527-56173546 MS.gene56020:intron 60.0%
GGAGTTTGGAGGGGAAGGGA+GGG - chr2.3:56173526-56173545 MS.gene56020:intron 60.0%
GGTGCAGCATACTATGGCCG+TGG - chr2.3:56174410-56174429 MS.gene56020:intron 60.0%
GGTGGTTATGGGGTGGCTAC+TGG - chr2.3:56174290-56174309 MS.gene56020:intron 60.0%
GGTTATGGGGTGGCTACTGG+GGG - chr2.3:56174293-56174312 MS.gene56020:intron 60.0%
! TTGGGAGGAGAGGGCTTTGG+AGG + chr2.3:56173805-56173824 None:intergenic 60.0%
!!! ATTGGGGGGAGGGTTTTGGG+GGG + chr2.3:56173726-56173745 None:intergenic 60.0%
!!! GGGAGGGTTTTGGGGGGTTA+TGG + chr2.3:56173720-56173739 None:intergenic 60.0%
GAAGGGAGGGGAGGGCTTTG+GGG - chr2.3:56173539-56173558 MS.gene56020:intron 65.0%
GAGTTTGGAGGGGAGGGGAG+GGG + chr2.3:56173874-56173893 None:intergenic 65.0%
GGAAGGGAGGGGAGGGCTTT+GGG - chr2.3:56173538-56173557 MS.gene56020:intron 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG + chr2.3:56173875-56173894 None:intergenic 65.0%
GGGAGTTTGGAGGGGAAGGG+AGG - chr2.3:56173525-56173544 MS.gene56020:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG - chr2.3:56173531-56173550 MS.gene56020:intron 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG - chr2.3:56173530-56173549 MS.gene56020:intron 65.0%
! AAGGGAGGGGAGGGCTTTGG+GGG - chr2.3:56173540-56173559 MS.gene56020:intron 65.0%
GGGAAGGGAGGGGAGGGCTT+TGG - chr2.3:56173537-56173556 MS.gene56020:intron 70.0%
GGGAGTTTGGAGGGGAGGGG+AGG + chr2.3:56173876-56173895 None:intergenic 70.0%
TTGGAGGGGAGGGGAGGGGA+GGG + chr2.3:56173870-56173889 None:intergenic 70.0%
TTTGGAGGGGAGGGGAGGGG+AGG + chr2.3:56173871-56173890 None:intergenic 70.0%
! GGGAGGGGAGGGGAGGGTTT+TGG + chr2.3:56173864-56173883 None:intergenic 70.0%
!! AGGGAGGGGAGGGCTTTGGG+GGG - chr2.3:56173541-56173560 MS.gene56020:intron 70.0%
!! AGGGGAGGGCTTTGGGGGGT+TGG - chr2.3:56173545-56173564 MS.gene56020:intron 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 56172647 56175027 56172647 ID=MS.gene56020
chr2.3 mRNA 56172647 56175027 56172647 ID=MS.gene56020.t1;Parent=MS.gene56020
chr2.3 exon 56174652 56175027 56174652 ID=MS.gene56020.t1.exon1;Parent=MS.gene56020.t1
chr2.3 CDS 56174652 56175027 56174652 ID=cds.MS.gene56020.t1;Parent=MS.gene56020.t1
chr2.3 exon 56173224 56173383 56173224 ID=MS.gene56020.t1.exon2;Parent=MS.gene56020.t1
chr2.3 CDS 56173224 56173383 56173224 ID=cds.MS.gene56020.t1;Parent=MS.gene56020.t1
chr2.3 exon 56172647 56173067 56172647 ID=MS.gene56020.t1.exon3;Parent=MS.gene56020.t1
chr2.3 CDS 56172647 56173067 56172647 ID=cds.MS.gene56020.t1;Parent=MS.gene56020.t1
Gene Sequence

>MS.gene56020

ATGAATTCCAAATGGACATTTTTTCTATTAGCCATTGCAACAATATTAGTGATAGGAAATGCACAAACATCAGTGAAGCCATTGGTGAAAACAGTAAAGGGAAAGAAACTATGTGACAAAGGGTGGGAATGTAAAGGTTGGTCAGTGTATTGTTGCAATGAGACTATATCTGATTATTTTCAAACATACCAATTTGAGAATTTGTTCTCGAAACGGAATGATCCAACGGCACATGCTTCTGGATTTTGGGACTATCGTTCTTTTATTACTGCTGCTGCACTTTATGAGCCTCTTGGATTTGGTACTTCTGGTGGAAAGCATGGTGGTCAGAAAGAGGTTGCTGCTTTTCTTGGTCATGTTGGAAGCAAGACCTCTTGTAAGTCACAATTCAATGTTTTTGTTTGTTAATGTTATATGAAATCGTTTTTTATAAAATGATCAATTCATGTGGGGGACAAAATTAACTTTTTATTGATCTTATGTTTTAGAACATGATCAATTCATGTAGGGGAAAAGTTAGGTCTTTCTTGATCTTATGTTTTTTGGTTCATTATGCCCTCAATTGCATGATATTTGACATTTTAAGTGAGATATAGTTAGATTTGTTGATTAATTTATTTTATACATATCTTTGAATCATTTGATGATTCATAGATTTAGATTTCATATACAGTAAAATTTCAAACTTGGAATTTTAGAGTTAAAAAGAAACAAAACACGATTGTTTTCAAACTTGATCCAATGATTATCGATGTCCTGACTACGTGAATGACTGAAATTGTAACCACAAAAAACCCATATCTCAACACACACACATACACAAATCTTTTTTCCGTTGTAAAGAGTCAAGCGGCGTCTCACACACTAAGGCTTTGTTTGGGAGTTTGGAGGGGAAGGGAGGGGAGGGCTTTGGGGGGTTGGAAATATATAGAAAAATGAACAAAAAATTCACATTTTTTGAAAGAACAGTTTTTTAGAGAATGGTAAACTTATACTTATGATTAATATACTTTTAATTTTAAGAATATAATAACAACATAGATTGGATTTGAAAAATTCATATAAACCCTCCATAACCCCCCAAAACCCTCCCCCCAATACAATTTTTGAGTTCCCCCAAATGAGGGGGATTTTTTATTATGAGTAAAAAATTAACCTCCAAAGCCCTCTCCTCCCAATGTCTTCTATTTCTTCCACTTGCTCCTTCTTTTTTTCCAAAACCCTCCCCTCCCCTCCCCTCCAAACTCCCAAACAAAACCTAAGTGCTGAAAAGTGGAGAATTGCATATTGAAATCAACGTCACATCATATCAAATGTCCCTATAATTTTTTACCATGAGTTGTATAGGACAAAACAAATCAACTTAGTTTACATTAAGATTTCAAAAATCTCAATATGAAAATATAAAATATAATATATGTTAGCTAACTTGTATGGACATACTATATACTATTCATTATCTAAATATTGACCAAACAACTTCAAATTTTTGGATCTGTTAGCGCTTATACACCAAACTTGGTTTTTGTTTAGGAAAAATAATGAATTATATAGGTGAAATTAAAGATGTTGTTAGATTATTAGAGTGGTTTCATATTTATTTTAAGATGATAAAATTGTAAGGTTCTTGAAATATTGTTTCAGGTGGTTATGGGGTGGCTACTGGGGGACCCTTTGCATGGGGCTTATGCTACAATAAGGAATTGAGTCCTGATCAATTCTATTGTGATGACTACTACAAATTAACCTATCCATGTAGTCCTGGTGCAGCATACTATGGCCGTGGTGCCATACCGATTTATTGGTATTCATATTTTGATTTTTTCTTGAAATATTTCATTTTTTGCGTGATCTTGCTGCCACGTTCCATTGAGACTCATTACTTGTTTCGAATCGTCTATAAAAGAAGTATTTATGACAAAAATCCTTATGTTGTCTTTCTTGATGCCTTTAAAAACAGGAATTACAACTATGGAAAAATTGGAGAAGCCTTGAAAGTGGATCTATTAAACCATCCAGAATACATAGAACAAAATGCAACATTGGCCTTCCAAGCAGCACTATGGAAATGGATGACACCACCAGAAAAACACATACCTTCACCACATGATGTTTTTGTTGGAAATTGGAAACCAACAAAAAATGACACATTGTCCAAAAGGGTACCTGGATTTGGTGCCACAATAAATGTTTTATATGGTGATCAAGTTTGTGACCAAGGTTCTGATAATGAAGCAATGAGCAACATAATTTCTCATTATCTTTATTACCTTGATTTATTAGGAGTTGGTAGAGAAGAGGCAGGACCTAATGAAATTCTCTCTTGTGCTGAACAAGCTGCTTTTAAACCTACTGGCCCACCTTCTTCTTCAACAACTTGA
Protein sequence

>MS.gene56020.t1

MNSKWTFFLLAIATILVIGNAQTSVKPLVKTVKGKKLCDKGWECKGWSVYCCNETISDYFQTYQFENLFSKRNDPTAHASGFWDYRSFITAAALYEPLGFGTSGGKHGGQKEVAAFLGHVGSKTSCGYGVATGGPFAWGLCYNKELSPDQFYCDDYYKLTYPCSPGAAYYGRGAIPIYWNYNYGKIGEALKVDLLNHPEYIEQNATLAFQAALWKWMTPPEKHIPSPHDVFVGNWKPTKNDTLSKRVPGFGATINVLYGDQVCDQGSDNEAMSNIISHYLYYLDLLGVGREEAGPNEILSCAEQAAFKPTGPPSSSTT