Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56128.t1 | XP_003621746.2 | 94.3 | 383 | 21 | 1 | 1 | 382 | 1 | 383 | 1.60E-183 | 652.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56128.t1 | Q5XV40 | 35.3 | 397 | 203 | 15 | 1 | 382 | 1 | 358 | 2.7e-35 | 151.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56128.t1 | G7KUR7 | 94.3 | 383 | 21 | 1 | 1 | 382 | 1 | 383 | 1.1e-183 | 652.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050563 | MS.gene56128 | 0.802683 | 4.99E-49 | -1.69E-46 |
| MS.gene050585 | MS.gene56128 | 0.825407 | 4.77E-54 | -1.69E-46 |
| MS.gene050807 | MS.gene56128 | 0.802102 | 6.58E-49 | -1.69E-46 |
| MS.gene052142 | MS.gene56128 | 0.819401 | 1.18E-52 | -1.69E-46 |
| MS.gene052698 | MS.gene56128 | 0.818385 | 2.02E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene56128 | 0.815479 | 9.05E-52 | -1.69E-46 |
| MS.gene053563 | MS.gene56128 | 0.808664 | 2.77E-50 | -1.69E-46 |
| MS.gene055359 | MS.gene56128 | 0.80223 | 6.19E-49 | -1.69E-46 |
| MS.gene056005 | MS.gene56128 | 0.800928 | 1.15E-48 | -1.69E-46 |
| MS.gene059439 | MS.gene56128 | 0.81145 | 6.96E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56128.t1 | MTR_7g022360 | 96.345 | 383 | 13 | 1 | 1 | 382 | 1 | 383 | 0.0 | 759 |
| MS.gene56128.t1 | MTR_3g085710 | 44.366 | 426 | 138 | 20 | 1 | 382 | 1 | 371 | 2.02e-82 | 256 |
| MS.gene56128.t1 | MTR_7g028590 | 34.913 | 401 | 183 | 20 | 1 | 382 | 1 | 342 | 2.69e-48 | 167 |
| MS.gene56128.t1 | MTR_7g028590 | 33.846 | 325 | 155 | 16 | 1 | 318 | 1 | 272 | 8.23e-35 | 129 |
| MS.gene56128.t1 | MTR_7g028590 | 35.075 | 268 | 115 | 14 | 136 | 381 | 5 | 235 | 2.53e-25 | 103 |
| MS.gene56128.t1 | MTR_7g028350 | 27.525 | 396 | 182 | 14 | 24 | 382 | 1 | 328 | 6.60e-20 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56128.t1 | AT5G14090 | 35.768 | 397 | 201 | 16 | 1 | 382 | 1 | 358 | 7.19e-48 | 166 |
| MS.gene56128.t1 | AT5G14090 | 39.130 | 253 | 125 | 9 | 1 | 252 | 1 | 225 | 4.29e-38 | 139 |
| MS.gene56128.t1 | AT3G27025 | 28.866 | 291 | 136 | 12 | 95 | 382 | 67 | 289 | 6.65e-12 | 66.2 |
Find 55 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCCAACTGTTGAACTTTC+TGG | 0.088694 | 7.4:+79565796 | None:intergenic |
| AATTCTTGCAATTGTCTATC+AGG | 0.239515 | 7.4:-79568219 | MS.gene56128:CDS |
| TTGGCTGATGAGATTTCTTT+TGG | 0.260026 | 7.4:-79567559 | MS.gene56128:CDS |
| GTTGATGGATTTGATGAAAT+TGG | 0.270523 | 7.4:+79567967 | None:intergenic |
| CAAGAAGATGAATCTTCTTC+TGG | 0.279543 | 7.4:+79565691 | None:intergenic |
| TTCCCTGGCTTCCTTGCAAT+TGG | 0.280658 | 7.4:-79568009 | MS.gene56128:CDS |
| GAAATATTCTGCTTTGAATA+TGG | 0.298504 | 7.4:-79567488 | MS.gene56128:CDS |
| GAAGAACATGAAGAAGAATA+TGG | 0.306054 | 7.4:-79568069 | MS.gene56128:CDS |
| TTGAATCTGATTCCAAGATT+TGG | 0.307455 | 7.4:+79568156 | None:intergenic |
| TACAGAACCATTCAAAGATT+TGG | 0.321359 | 7.4:-79569249 | MS.gene56128:CDS |
| CCTTTACAAGGTTATTTGTT+TGG | 0.326980 | 7.4:-79567673 | MS.gene56128:CDS |
| GATGAGTTAGAGAAAGTTCT+TGG | 0.327038 | 7.4:-79567859 | MS.gene56128:CDS |
| TTTGTGTCTGTTCCTTCAAT+TGG | 0.329555 | 7.4:+79567706 | None:intergenic |
| AAGAAGATTCATCTTCTTGC+AGG | 0.336701 | 7.4:-79565687 | MS.gene56128:CDS |
| CCATTCAAAGATTTGGTCAT+TGG | 0.344166 | 7.4:-79569242 | MS.gene56128:intron |
| AGCTGAGAGTAAACTCAATA+AGG | 0.352063 | 7.4:-79567380 | MS.gene56128:intron |
| AACTTCAGAAAATCATTTGC+TGG | 0.355575 | 7.4:-79568108 | MS.gene56128:CDS |
| AATTCTTTGTTGCAGTTACT+TGG | 0.374830 | 7.4:-79569305 | MS.gene56128:intron |
| ATTTGAAATGATGGTGTTGA+TGG | 0.382144 | 7.4:+79567952 | None:intergenic |
| GCTATGTTTGATCTCTTCCC+TGG | 0.391065 | 7.4:-79568024 | MS.gene56128:CDS |
| TCAACAGTTGGACACAAATC+TGG | 0.407798 | 7.4:-79565787 | MS.gene56128:CDS |
| CATCTTCTTGCAGGGAGCAT+TGG | 0.416708 | 7.4:-79565678 | MS.gene56128:CDS |
| TCTAGATTCTCCATATGTTC+CGG | 0.422180 | 7.4:-79565831 | MS.gene56128:intron |
| GTTCCAATTGCAAGGAAGCC+AGG | 0.422492 | 7.4:+79568006 | None:intergenic |
| CCAATGACCAAATCTTTGAA+TGG | 0.422656 | 7.4:+79569242 | None:intergenic |
| TTCCTTGCAATTGGAACACT+TGG | 0.425497 | 7.4:-79568000 | MS.gene56128:CDS |
| CTTTGTTGCAGTTACTTGGC+TGG | 0.428583 | 7.4:-79569301 | MS.gene56128:intron |
| ATGCACAAGGTAGCCTTTGT+TGG | 0.429984 | 7.4:+79565714 | None:intergenic |
| TGAACTGAGATTTGAAATGA+TGG | 0.462331 | 7.4:+79567943 | None:intergenic |
| TGCACAAGGTAGCCTTTGTT+GGG | 0.462363 | 7.4:+79565715 | None:intergenic |
| CTGCTTGAAGAATCATAGCT+TGG | 0.479883 | 7.4:+79567814 | None:intergenic |
| GTCAGCATAGTAACAATAAG+TGG | 0.484365 | 7.4:-79567733 | MS.gene56128:CDS |
| TACTTCTTCCAGTGCTGACA+TGG | 0.492523 | 7.4:+79567785 | None:intergenic |
| TACTTCTTCCAGTGCTGACA+TGG | 0.496234 | 7.4:+79567761 | None:intergenic |
| ATTTGATAAAAGAAATGAAA+GGG | 0.497913 | 7.4:-79567518 | MS.gene56128:CDS |
| AATGCTGTTTGTCCTTTACA+AGG | 0.501835 | 7.4:-79567685 | MS.gene56128:CDS |
| AGAAGTAGCCATGTCAGCAC+TGG | 0.514813 | 7.4:-79567769 | MS.gene56128:CDS |
| AGTTACTTGGCTGGATGCAT+AGG | 0.536259 | 7.4:-79569292 | MS.gene56128:CDS |
| TTCCAAGTGTTCCAATTGCA+AGG | 0.537713 | 7.4:+79567998 | None:intergenic |
| ATAAGTGGAAAACCAATTGA+AGG | 0.538137 | 7.4:-79567718 | MS.gene56128:CDS |
| ATTCTTGCAATTGTCTATCA+GGG | 0.538206 | 7.4:-79568218 | MS.gene56128:CDS |
| ATGGATTTGATGAAATTGGT+TGG | 0.539687 | 7.4:+79567971 | None:intergenic |
| CCAAACAAATAACCTTGTAA+AGG | 0.544230 | 7.4:+79567673 | None:intergenic |
| AGAAACAGCCATGTCAGCAC+TGG | 0.552963 | 7.4:-79567793 | MS.gene56128:CDS |
| TTCCAATTGCAAGGAAGCCA+GGG | 0.572756 | 7.4:+79568007 | None:intergenic |
| AGAAGATTCATCTTCTTGCA+GGG | 0.588231 | 7.4:-79565686 | MS.gene56128:CDS |
| GAAACAGCAGTTACTAGTGT+TGG | 0.588615 | 7.4:-79567631 | MS.gene56128:CDS |
| AATCTCAGTTCAAACCATAA+CGG | 0.593741 | 7.4:-79567932 | MS.gene56128:CDS |
| CATCCAGAAAGTTCAACAGT+TGG | 0.600759 | 7.4:-79565799 | MS.gene56128:CDS |
| TTATTGTTACTATGCTGACA+TGG | 0.607345 | 7.4:+79567737 | None:intergenic |
| AAAGAGCATAGGACTTCACT+AGG | 0.619151 | 7.4:-79567604 | MS.gene56128:CDS |
| AATTTGATAAAAGAAATGAA+AGG | 0.633612 | 7.4:-79567519 | MS.gene56128:CDS |
| AATGATGGAGGTCCCAACAA+AGG | 0.636070 | 7.4:-79565727 | MS.gene56128:CDS |
| AATCTTCTTCTGGATGCACA+AGG | 0.662162 | 7.4:+79565701 | None:intergenic |
| GTGTTGGTAAGAAAGAGCAT+AGG | 0.662195 | 7.4:-79567615 | MS.gene56128:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATATTTTAATTATTTT+TGG | - | chr7.4:79567687-79567706 | MS.gene56128:CDS | 0.0% |
| !! | AATATACTACAAAATATATA+TGG | + | chr7.4:79568451-79568470 | None:intergenic | 10.0% |
| !! | TAAATAATTAATGTGATTTA+AGG | - | chr7.4:79567889-79567908 | MS.gene56128:CDS | 10.0% |
| !!! | TATTTTAATTATTTTTGGTT+AGG | - | chr7.4:79567692-79567711 | MS.gene56128:CDS | 10.0% |
| !!! | TTTTTACTATTTTATTTTGA+TGG | + | chr7.4:79565171-79565190 | None:intergenic | 10.0% |
| !!! | TTTTTTCAAATTTTCTAAAT+TGG | + | chr7.4:79567390-79567409 | None:intergenic | 10.0% |
| !! | AAAAAAGTTAATCATATTTG+AGG | + | chr7.4:79565713-79565732 | None:intergenic | 15.0% |
| !! | AAAAATGAATATTGAATATG+TGG | + | chr7.4:79568770-79568789 | None:intergenic | 15.0% |
| !! | AAATTATCTTCTAATTAAGT+TGG | - | chr7.4:79564725-79564744 | MS.gene56128:intron | 15.0% |
| !! | AATATATACTATAAGAAAAG+TGG | - | chr7.4:79567275-79567294 | MS.gene56128:intron | 15.0% |
| !! | AATTTGATAAAAGAAATGAA+AGG | - | chr7.4:79566546-79566565 | MS.gene56128:intron | 15.0% |
| !! | ATAAATTACCATATCATATA+AGG | + | chr7.4:79567841-79567860 | None:intergenic | 15.0% |
| !! | ATTAAACTTAAAAGTTATAG+TGG | + | chr7.4:79565593-79565612 | None:intergenic | 15.0% |
| !! | ATTTGATAAAAGAAATGAAA+GGG | - | chr7.4:79566547-79566566 | MS.gene56128:intron | 15.0% |
| !! | GAACTTATGAAAAAAATTTA+CGG | + | chr7.4:79565078-79565097 | None:intergenic | 15.0% |
| !! | TAGAAAATTTGAAAAAAGTA+GGG | - | chr7.4:79567393-79567412 | MS.gene56128:CDS | 15.0% |
| !! | TTAGAAAATTTGAAAAAAGT+AGG | - | chr7.4:79567392-79567411 | MS.gene56128:CDS | 15.0% |
| !!! | AATCATAGTTTATAACATTT+TGG | - | chr7.4:79568012-79568031 | MS.gene56128:CDS | 15.0% |
| !!! | AATTTTCAATTTTTTTTTGG+TGG | + | chr7.4:79567114-79567133 | None:intergenic | 15.0% |
| !!! | AATTTTTTCATAAACAAAGA+AGG | + | chr7.4:79568096-79568115 | None:intergenic | 15.0% |
| !!! | AGAAAATAAGCAATTTTAAA+AGG | + | chr7.4:79568982-79569001 | None:intergenic | 15.0% |
| !!! | AGAAGATAATTTTATATGAT+TGG | + | chr7.4:79564717-79564736 | None:intergenic | 15.0% |
| !!! | ATCAATTTTAAAAGAAAGAA+GGG | - | chr7.4:79569179-79569198 | MS.gene56128:intron | 15.0% |
| !!! | ATCATAGTTTATAACATTTT+GGG | - | chr7.4:79568013-79568032 | MS.gene56128:CDS | 15.0% |
| !!! | ATGATTATAAATTTTGGATT+TGG | - | chr7.4:79568209-79568228 | MS.gene56128:CDS | 15.0% |
| !!! | GAAAATAAGCAATTTTAAAA+GGG | + | chr7.4:79568981-79569000 | None:intergenic | 15.0% |
| !!! | TAATTTTTGTTGTTAGAATA+GGG | - | chr7.4:79567189-79567208 | MS.gene56128:intron | 15.0% |
| !!! | TGTACATTATAATTATTTTC+AGG | + | chr7.4:79568481-79568500 | None:intergenic | 15.0% |
| !!! | TTTTGAATTTGAAATATGAT+TGG | - | chr7.4:79567589-79567608 | MS.gene56128:CDS | 15.0% |
| !!! | TTTTTTCTTCTAAATTATGA+TGG | - | chr7.4:79566850-79566869 | MS.gene56128:intron | 15.0% |
| !! | AATAATGAATTTACCAATCA+TGG | - | chr7.4:79565207-79565226 | MS.gene56128:intron | 20.0% |
| !! | AATATGCGAAAAAATAATGT+AGG | - | chr7.4:79568052-79568071 | MS.gene56128:CDS | 20.0% |
| !! | AATATGTTTGGAAAATGTTT+GGG | - | chr7.4:79566989-79567008 | MS.gene56128:intron | 20.0% |
| !! | AATTTGTATCACAATATGTT+TGG | - | chr7.4:79566977-79566996 | MS.gene56128:intron | 20.0% |
| !! | ACTCTTAATGTCATATTATT+AGG | - | chr7.4:79568941-79568960 | MS.gene56128:intron | 20.0% |
| !! | AGAAAATTTGAAAAAAGTAG+GGG | - | chr7.4:79567394-79567413 | MS.gene56128:CDS | 20.0% |
| !! | ATACTTACAATATTATAGCT+CGG | - | chr7.4:79567561-79567580 | MS.gene56128:CDS | 20.0% |
| !! | ATCAGTTGTAAATTATCAAT+TGG | + | chr7.4:79569263-79569282 | None:intergenic | 20.0% |
| !! | GAACAAACAAATACATATAT+AGG | + | chr7.4:79569356-79569375 | None:intergenic | 20.0% |
| !! | GCATAAAATAAAAATATGCA+AGG | - | chr7.4:79567066-79567085 | MS.gene56128:intron | 20.0% |
| !! | TTAAAATTTGCCATGTTTAA+AGG | - | chr7.4:79565686-79565705 | MS.gene56128:CDS | 20.0% |
| !!! | AAATTAATATTTTGAGAAGC+TGG | - | chr7.4:79567329-79567348 | MS.gene56128:intron | 20.0% |
| !!! | ATTTTTCAAAGTTATCAATG+AGG | + | chr7.4:79568640-79568659 | None:intergenic | 20.0% |
| !!! | CTGTTCATGATTATAAATTT+TGG | - | chr7.4:79568203-79568222 | MS.gene56128:CDS | 20.0% |
| !!! | GATCAATTTTAAAAGAAAGA+AGG | - | chr7.4:79569178-79569197 | MS.gene56128:intron | 20.0% |
| !!! | GTAATTTTTGTTGTTAGAAT+AGG | - | chr7.4:79567188-79567207 | MS.gene56128:intron | 20.0% |
| !!! | TAAGGATAATTTGAAATTCA+CGG | - | chr7.4:79567499-79567518 | MS.gene56128:CDS | 20.0% |
| !!! | TCATAGTTTATAACATTTTG+GGG | - | chr7.4:79568014-79568033 | MS.gene56128:CDS | 20.0% |
| !!! | TTTTAAACTCGACTTTTTAT+TGG | + | chr7.4:79568850-79568869 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTCGTAAGTTATT+TGG | - | chr7.4:79565012-79565031 | MS.gene56128:intron | 20.0% |
| ! | AAATAAAAATATGCAAGGTC+CGG | - | chr7.4:79567071-79567090 | MS.gene56128:intron | 25.0% |
| ! | AAGAAGAAAAACATGAATGA+TGG | - | chr7.4:79568323-79568342 | MS.gene56128:intron | 25.0% |
| ! | ATTACTCTTGTCTAATTAAG+AGG | - | chr7.4:79565480-79565499 | MS.gene56128:intron | 25.0% |
| ! | CAATATGTTTGGAAAATGTT+TGG | - | chr7.4:79566988-79567007 | MS.gene56128:intron | 25.0% |
| ! | CTCATGTTAAATATCAAAAG+CGG | + | chr7.4:79567955-79567974 | None:intergenic | 25.0% |
| ! | CTTATAGTCAAGATATGAAT+AGG | + | chr7.4:79565631-79565650 | None:intergenic | 25.0% |
| ! | TAGAAGAAAAGAATCACTAA+TGG | - | chr7.4:79568603-79568622 | MS.gene56128:intron | 25.0% |
| ! | TAGCACATAACTTTATTCAA+TGG | + | chr7.4:79565342-79565361 | None:intergenic | 25.0% |
| ! | TATCAAACATGCATCTATTT+CGG | + | chr7.4:79566774-79566793 | None:intergenic | 25.0% |
| ! | TATCATCAAAAACCAAATCT+TGG | - | chr7.4:79565897-79565916 | MS.gene56128:intron | 25.0% |
| ! | TCATGTTAAATATCAAAAGC+GGG | + | chr7.4:79567954-79567973 | None:intergenic | 25.0% |
| ! | TCTGAAAACCTTATATGATA+TGG | - | chr7.4:79567830-79567849 | MS.gene56128:CDS | 25.0% |
| ! | TTAAATAGTCAATGCATGTT+AGG | + | chr7.4:79564898-79564917 | None:intergenic | 25.0% |
| !! | AATCTTTTGTACCAATCAAT+AGG | - | chr7.4:79565415-79565434 | MS.gene56128:intron | 25.0% |
| !! | ATAGTTTATAACATTTTGGG+GGG | - | chr7.4:79568016-79568035 | MS.gene56128:CDS | 25.0% |
| !! | CATAGTTTATAACATTTTGG+GGG | - | chr7.4:79568015-79568034 | MS.gene56128:CDS | 25.0% |
| !! | GAAATATTCTGCTTTGAATA+TGG | - | chr7.4:79566577-79566596 | MS.gene56128:intron | 25.0% |
| !! | TCTTTTTGTGATATAGTGAA+AGG | + | chr7.4:79568559-79568578 | None:intergenic | 25.0% |
| !! | TTTATTCAATGGTTGTTGTT+AGG | + | chr7.4:79565331-79565350 | None:intergenic | 25.0% |
| !!! | ACTTTTTCAGAGAAGTAAAT+TGG | - | chr7.4:79566487-79566506 | MS.gene56128:intron | 25.0% |
| !!! | ATGTTTAGACTCACTTTTAA+GGG | - | chr7.4:79565654-79565673 | MS.gene56128:intron | 25.0% |
| !!! | TATTATAGTTTAGTTCTCCT+TGG | + | chr7.4:79565260-79565279 | None:intergenic | 25.0% |
| !!! | TCGTTGTTTAAAGCAATTTT+TGG | - | chr7.4:79565732-79565751 | MS.gene56128:CDS | 25.0% |
| !!! | TTACTTTCGAAATTTTTCAG+CGG | + | chr7.4:79569133-79569152 | None:intergenic | 25.0% |
| !!! | TTTCAATTTTTTTTTGGTGG+TGG | + | chr7.4:79567111-79567130 | None:intergenic | 25.0% |
| AAAAATAGGGATGAGTTTAC+AGG | + | chr7.4:79568157-79568176 | None:intergenic | 30.0% | |
| AAAAATTCTTCATCTGCGAA+TGG | - | chr7.4:79566641-79566660 | MS.gene56128:intron | 30.0% | |
| AAAATAGGGATGAGTTTACA+GGG | + | chr7.4:79568156-79568175 | None:intergenic | 30.0% | |
| AACTTCAGAAAATCATTTGC+TGG | - | chr7.4:79565957-79565976 | MS.gene56128:intron | 30.0% | |
| AAGAAAAACATGAATGATGG+AGG | - | chr7.4:79568326-79568345 | MS.gene56128:intron | 30.0% | |
| AATAAAAATATGCAAGGTCC+GGG | - | chr7.4:79567072-79567091 | MS.gene56128:intron | 30.0% | |
| AATCTCAGTTCAAACCATAA+CGG | - | chr7.4:79566133-79566152 | MS.gene56128:intron | 30.0% | |
| AATTCTTGCAATTGTCTATC+AGG | - | chr7.4:79565846-79565865 | MS.gene56128:intron | 30.0% | |
| AATTCTTTGTTGCAGTTACT+TGG | - | chr7.4:79564760-79564779 | MS.gene56128:intron | 30.0% | |
| AGAAGGGATATACTTATCAA+TGG | + | chr7.4:79569226-79569245 | None:intergenic | 30.0% | |
| ATAAGTGGAAAACCAATTGA+AGG | - | chr7.4:79566347-79566366 | MS.gene56128:intron | 30.0% | |
| ATCTACCCAGACTAAAAATA+GGG | + | chr7.4:79568170-79568189 | None:intergenic | 30.0% | |
| ATGGATTTGATGAAATTGGT+TGG | + | chr7.4:79566097-79566116 | None:intergenic | 30.0% | |
| ATGTTTCATCTCATTGAGAT+AGG | + | chr7.4:79568897-79568916 | None:intergenic | 30.0% | |
| ATTCTTGCAATTGTCTATCA+GGG | - | chr7.4:79565847-79565866 | MS.gene56128:intron | 30.0% | |
| CCAAACAAATAACCTTGTAA+AGG | + | chr7.4:79566395-79566414 | None:intergenic | 30.0% | |
| CCTTTACAAGGTTATTTGTT+TGG | - | chr7.4:79566392-79566411 | MS.gene56128:intron | 30.0% | |
| GAAGAACATGAAGAAGAATA+TGG | - | chr7.4:79565996-79566015 | MS.gene56128:intron | 30.0% | |
| GTTAGGTAAATTGTCTTCTT+GGG | + | chr7.4:79565314-79565333 | None:intergenic | 30.0% | |
| TACAGAACCATTCAAAGATT+TGG | - | chr7.4:79564816-79564835 | MS.gene56128:intron | 30.0% | |
| TATCTACCCAGACTAAAAAT+AGG | + | chr7.4:79568171-79568190 | None:intergenic | 30.0% | |
| TATTTGAGGACCTTTAAACA+TGG | + | chr7.4:79565699-79565718 | None:intergenic | 30.0% | |
| TGTTAGGTAAATTGTCTTCT+TGG | + | chr7.4:79565315-79565334 | None:intergenic | 30.0% | |
| TTATTGTTACTATGCTGACA+TGG | + | chr7.4:79566331-79566350 | None:intergenic | 30.0% | |
| TTCGAAAGTAAGTTAACTTC+CGG | - | chr7.4:79569142-79569161 | MS.gene56128:intron | 30.0% | |
| TTGAATCTGATTCCAAGATT+TGG | + | chr7.4:79565912-79565931 | None:intergenic | 30.0% | |
| TTTCGTTAAAAGCGAGTTTA+AGG | + | chr7.4:79565803-79565822 | None:intergenic | 30.0% | |
| ! | AAGTATATCCCTTCTTTTGT+TGG | - | chr7.4:79569231-79569250 | MS.gene56128:intron | 30.0% |
| ! | AATCAATTTTTCTATGTCGC+AGG | - | chr7.4:79565822-79565841 | MS.gene56128:CDS | 30.0% |
| ! | ATTTGAAATGATGGTGTTGA+TGG | + | chr7.4:79566116-79566135 | None:intergenic | 30.0% |
| ! | CTTTGTTTGAATTGCGTTAT+TGG | + | chr7.4:79565139-79565158 | None:intergenic | 30.0% |
| ! | CTTTTCAACATGGTTTCAAA+CGG | - | chr7.4:79565567-79565586 | MS.gene56128:intron | 30.0% |
| ! | TCATATAAGGTTTTCAGACT+CGG | + | chr7.4:79567828-79567847 | None:intergenic | 30.0% |
| ! | TGAACTGAGATTTGAAATGA+TGG | + | chr7.4:79566125-79566144 | None:intergenic | 30.0% |
| ! | TTCGTTTTCATTTTCCGTTA+TGG | + | chr7.4:79566150-79566169 | None:intergenic | 30.0% |
| ! | TTTTAGTCTGGGTAGATAAA+TGG | - | chr7.4:79568173-79568192 | MS.gene56128:CDS | 30.0% |
| ! | TTTTGTGATATAGTGAAAGG+AGG | + | chr7.4:79568556-79568575 | None:intergenic | 30.0% |
| ! | TTTTGTTCTTCATCAAGTGA+TGG | + | chr7.4:79565876-79565895 | None:intergenic | 30.0% |
| !! | CATGTTTAGACTCACTTTTA+AGG | - | chr7.4:79565653-79565672 | MS.gene56128:intron | 30.0% |
| !! | GGTTTAATCACCTTTTAAGT+CGG | + | chr7.4:79569080-79569099 | None:intergenic | 30.0% |
| !! | GTTGATGGATTTGATGAAAT+TGG | + | chr7.4:79566101-79566120 | None:intergenic | 30.0% |
| !! | GTTTAATCACCTTTTAAGTC+GGG | + | chr7.4:79569079-79569098 | None:intergenic | 30.0% |
| !! | TGCTTATTTTCTTGATCCAA+CGG | - | chr7.4:79568990-79569009 | MS.gene56128:intron | 30.0% |
| !! | TTAATATTTTGAGAAGCTGG+AGG | - | chr7.4:79567332-79567351 | MS.gene56128:intron | 30.0% |
| !!! | AACTCACGTACTTTTAAGAT+TGG | - | chr7.4:79569049-79569068 | MS.gene56128:intron | 30.0% |
| !!! | GATTGGTTTTGATTCTGAAA+AGG | + | chr7.4:79564700-79564719 | None:intergenic | 30.0% |
| !!! | GATTTTCTGAAGTTGTTTTG+AGG | + | chr7.4:79565951-79565970 | None:intergenic | 30.0% |
| !!! | TTTCTGGATGAACTTTTTTC+CGG | + | chr7.4:79568256-79568275 | None:intergenic | 30.0% |
| !!! | TTTTATTTTGATGGCCATCA+AGG | + | chr7.4:79565162-79565181 | None:intergenic | 30.0% |
| AAAGAATCACTAATGGTGTG+TGG | - | chr7.4:79568610-79568629 | MS.gene56128:intron | 35.0% | |
| AAATAGGGATGAGTTTACAG+GGG | + | chr7.4:79568155-79568174 | None:intergenic | 35.0% | |
| AAGAAGATTCATCTTCTTGC+AGG | - | chr7.4:79568378-79568397 | MS.gene56128:intron | 35.0% | |
| ACCAATCATGGATGAGTAAT+TGG | - | chr7.4:79565219-79565238 | MS.gene56128:intron | 35.0% | |
| AGAAGATTCATCTTCTTGCA+GGG | - | chr7.4:79568379-79568398 | MS.gene56128:intron | 35.0% | |
| AGCTGAGAGTAAACTCAATA+AGG | - | chr7.4:79566685-79566704 | MS.gene56128:intron | 35.0% | |
| ATAAAAATATGCAAGGTCCG+GGG | - | chr7.4:79567073-79567092 | MS.gene56128:intron | 35.0% | |
| ATAGATCGCATGTCAGATTT+AGG | + | chr7.4:79567785-79567804 | None:intergenic | 35.0% | |
| CAAGAAGATGAATCTTCTTC+TGG | + | chr7.4:79568377-79568396 | None:intergenic | 35.0% | |
| CAATTCAAACAAAGCCTTGA+TGG | - | chr7.4:79565145-79565164 | MS.gene56128:intron | 35.0% | |
| CATGAGCTCATCAATTTATG+TGG | + | chr7.4:79568817-79568836 | None:intergenic | 35.0% | |
| CCAATGACCAAATCTTTGAA+TGG | + | chr7.4:79564826-79564845 | None:intergenic | 35.0% | |
| GATGAGTTAGAGAAAGTTCT+TGG | - | chr7.4:79566206-79566225 | MS.gene56128:intron | 35.0% | |
| GGCTATATCCAACAAAAGAA+GGG | + | chr7.4:79569242-79569261 | None:intergenic | 35.0% | |
| GGCTTTCTCATTATTGTTGT+AGG | + | chr7.4:79568520-79568539 | None:intergenic | 35.0% | |
| GTCAGCATAGTAACAATAAG+TGG | - | chr7.4:79566332-79566351 | MS.gene56128:intron | 35.0% | |
| GTTAGGAGTGAGAATAAGTT+AGG | - | chr7.4:79567709-79567728 | MS.gene56128:CDS | 35.0% | |
| TAGATGCATGTTTGATATCG+TGG | - | chr7.4:79566777-79566796 | MS.gene56128:intron | 35.0% | |
| TCCAATTACTCATCCATGAT+TGG | + | chr7.4:79565223-79565242 | None:intergenic | 35.0% | |
| TCTAGATTCTCCATATGTTC+CGG | - | chr7.4:79568234-79568253 | MS.gene56128:intron | 35.0% | |
| TCTGACATGCGATCTATTAT+AGG | - | chr7.4:79567788-79567807 | MS.gene56128:CDS | 35.0% | |
| TGGCTATATCCAACAAAAGA+AGG | + | chr7.4:79569243-79569262 | None:intergenic | 35.0% | |
| TTTGTGTCTGTTCCTTCAAT+TGG | + | chr7.4:79566362-79566381 | None:intergenic | 35.0% | |
| ! | AATGCTGTTTGTCCTTTACA+AGG | - | chr7.4:79566380-79566399 | MS.gene56128:intron | 35.0% |
| ! | CCATTCAAAGATTTGGTCAT+TGG | - | chr7.4:79564823-79564842 | MS.gene56128:intron | 35.0% |
| ! | CGTTTGAAACCATGTTGAAA+AGG | + | chr7.4:79565569-79565588 | None:intergenic | 35.0% |
| ! | TCCAAAGCAACAATTTTGAG+CGG | - | chr7.4:79565521-79565540 | MS.gene56128:intron | 35.0% |
| ! | TTGGCTGATGAGATTTCTTT+TGG | - | chr7.4:79566506-79566525 | MS.gene56128:intron | 35.0% |
| !! | CACGCTGACACTTTTTAAAT+CGG | + | chr7.4:79569101-79569120 | None:intergenic | 35.0% |
| !! | GCTTATTTTCTTGATCCAAC+GGG | - | chr7.4:79568991-79569010 | MS.gene56128:intron | 35.0% |
| !! | TAGACTCACTTTTAAGGGAA+CGG | - | chr7.4:79565659-79565678 | MS.gene56128:CDS | 35.0% |
| !! | TTCTTGTATATGCCACTTTG+AGG | - | chr7.4:79569285-79569304 | MS.gene56128:CDS | 35.0% |
| !!! | AATTTTTTTTTGGTGGTGGC+CGG | + | chr7.4:79567107-79567126 | None:intergenic | 35.0% |
| !!! | ACTCATCCCTATTTTTAGTC+TGG | - | chr7.4:79568161-79568180 | MS.gene56128:CDS | 35.0% |
| !!! | CTCATCCCTATTTTTAGTCT+GGG | - | chr7.4:79568162-79568181 | MS.gene56128:CDS | 35.0% |
| !!! | GAACTTTTTTCCGGAACATA+TGG | + | chr7.4:79568247-79568266 | None:intergenic | 35.0% |
| AAAGGAGGAGGATACAAGTA+GGG | + | chr7.4:79568541-79568560 | None:intergenic | 40.0% | |
| AAGTTAACTTCCGGTGGATA+AGG | - | chr7.4:79569151-79569170 | MS.gene56128:intron | 40.0% | |
| AATCTTCTTCTGGATGCACA+AGG | + | chr7.4:79568367-79568386 | None:intergenic | 40.0% | |
| AGGCAAGGTGTAACAGAATA+TGG | + | chr7.4:79569318-79569337 | None:intergenic | 40.0% | |
| AGTTAACTTCCGGTGGATAA+GGG | - | chr7.4:79569152-79569171 | MS.gene56128:intron | 40.0% | |
| ATAGGCGTGCTAAAAGTAGT+AGG | + | chr7.4:79569338-79569357 | None:intergenic | 40.0% | |
| ATGTTGCGTCTCCTATTGAT+TGG | + | chr7.4:79565429-79565448 | None:intergenic | 40.0% | |
| ATTGGTTGACCCGACTTAAA+AGG | - | chr7.4:79569067-79569086 | MS.gene56128:intron | 40.0% | |
| CATCCAGAAAGTTCAACAGT+TGG | - | chr7.4:79568266-79568285 | MS.gene56128:intron | 40.0% | |
| CTGCTTGAAGAATCATAGCT+TGG | + | chr7.4:79566254-79566273 | None:intergenic | 40.0% | |
| GAAACAGCAGTTACTAGTGT+TGG | - | chr7.4:79566434-79566453 | MS.gene56128:intron | 40.0% | |
| GAAAGTAAGTTAACTTCCGG+TGG | - | chr7.4:79569145-79569164 | MS.gene56128:intron | 40.0% | |
| GGCAAGGTGTAACAGAATAT+GGG | + | chr7.4:79569317-79569336 | None:intergenic | 40.0% | |
| GGGACGATAATCATTCTTAG+CGG | - | chr7.4:79565542-79565561 | MS.gene56128:intron | 40.0% | |
| GTAGCTTGAAAACAGCATGT+TGG | + | chr7.4:79564853-79564872 | None:intergenic | 40.0% | |
| TCAACAGTTGGACACAAATC+TGG | - | chr7.4:79568278-79568297 | MS.gene56128:intron | 40.0% | |
| TGTCCAACTGTTGAACTTTC+TGG | + | chr7.4:79568272-79568291 | None:intergenic | 40.0% | |
| TGTGATATAGTGAAAGGAGG+AGG | + | chr7.4:79568553-79568572 | None:intergenic | 40.0% | |
| TTCCAAGTGTTCCAATTGCA+AGG | + | chr7.4:79566070-79566089 | None:intergenic | 40.0% | |
| TTCCTTGCAATTGGAACACT+TGG | - | chr7.4:79566065-79566084 | MS.gene56128:intron | 40.0% | |
| TTGATCATTCCCTTATCCAC+CGG | + | chr7.4:79569164-79569183 | None:intergenic | 40.0% | |
| ! | AAAGAGCATAGGACTTCACT+AGG | - | chr7.4:79566461-79566480 | MS.gene56128:intron | 40.0% |
| ! | CCAAAGCAACAATTTTGAGC+GGG | - | chr7.4:79565522-79565541 | MS.gene56128:intron | 40.0% |
| ! | GCTTTGGACAACATTTGAAG+AGG | + | chr7.4:79565509-79565528 | None:intergenic | 40.0% |
| ! | GTGTTGGTAAGAAAGAGCAT+AGG | - | chr7.4:79566450-79566469 | MS.gene56128:intron | 40.0% |
| ! | TGAGTTTAGCTCAGTTGGTA+AGG | - | chr7.4:79567038-79567057 | MS.gene56128:intron | 40.0% |
| !!! | ATTTTTTTTTGGTGGTGGCC+GGG | + | chr7.4:79567106-79567125 | None:intergenic | 40.0% |
| AGTTACTTGGCTGGATGCAT+AGG | - | chr7.4:79564773-79564792 | MS.gene56128:intron | 45.0% | |
| ATGCACAAGGTAGCCTTTGT+TGG | + | chr7.4:79568354-79568373 | None:intergenic | 45.0% | |
| CGTGCTAAAAGTAGTAGGCA+AGG | + | chr7.4:79569333-79569352 | None:intergenic | 45.0% | |
| CTTTGTTGCAGTTACTTGGC+TGG | - | chr7.4:79564764-79564783 | MS.gene56128:intron | 45.0% | |
| GAAAGGAGGAGGATACAAGT+AGG | + | chr7.4:79568542-79568561 | None:intergenic | 45.0% | |
| GCTATGTTTGATCTCTTCCC+TGG | - | chr7.4:79566041-79566060 | MS.gene56128:intron | 45.0% | |
| TGCACAAGGTAGCCTTTGTT+GGG | + | chr7.4:79568353-79568372 | None:intergenic | 45.0% | |
| TTCCAATTGCAAGGAAGCCA+GGG | + | chr7.4:79566061-79566080 | None:intergenic | 45.0% | |
| ! | AATGATGGAGGTCCCAACAA+AGG | - | chr7.4:79568338-79568357 | MS.gene56128:intron | 45.0% |
| ! | CCCGCTCAAAATTGTTGCTT+TGG | + | chr7.4:79565525-79565544 | None:intergenic | 45.0% |
| ! | GGAACAAAAGTATGCAGCCA+AGG | - | chr7.4:79565240-79565259 | MS.gene56128:intron | 45.0% |
| !! | CTTAGCGGACCTTTTCAACA+TGG | - | chr7.4:79565557-79565576 | MS.gene56128:intron | 45.0% |
| !! | TACTTCTTCCAGTGCTGACA+TGG | + | chr7.4:79566283-79566302 | None:intergenic | 45.0% |
| !! | TCACGCTCGACATTTTTCAG+TGG | - | chr7.4:79569021-79569040 | MS.gene56128:intron | 45.0% |
| !! | TGTATATGCCACTTTGAGGC+TGG | - | chr7.4:79569289-79569308 | MS.gene56128:CDS | 45.0% |
| !!! | TTTTTTTTTGGTGGTGGCCG+GGG | + | chr7.4:79567105-79567124 | None:intergenic | 45.0% |
| !!! | AAAAAATTGATAATTTTATA+AGG | - | chr7.4:79567481-79567500 | MS.gene56128:CDS | 5.0% |
| !!! | AAATTATCAATTTTTTTTTT+AGG | + | chr7.4:79567477-79567496 | None:intergenic | 5.0% |
| !!! | AATTATCAATTTTTTTTTTA+GGG | + | chr7.4:79567476-79567495 | None:intergenic | 5.0% |
| !!! | ATATTATATTATATTTTATG+AGG | + | chr7.4:79567675-79567694 | None:intergenic | 5.0% |
| !!! | TAAAATTTTCAATTTTTTTT+TGG | + | chr7.4:79567117-79567136 | None:intergenic | 5.0% |
| !!! | TATATAAATTTTAAAAGTTT+TGG | - | chr7.4:79567240-79567259 | MS.gene56128:intron | 5.0% |
| AGAAACAGCCATGTCAGCAC+TGG | - | chr7.4:79566272-79566291 | MS.gene56128:intron | 50.0% | |
| AGAAGTAGCCATGTCAGCAC+TGG | - | chr7.4:79566296-79566315 | MS.gene56128:intron | 50.0% | |
| AGCTACGACAGGTCAAGACA+GGG | + | chr7.4:79568121-79568140 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAACTCACG+AGG | + | chr7.4:79567036-79567055 | None:intergenic | 50.0% | |
| CCTGTCGTAGCTAACGTTGT+CGG | - | chr7.4:79568129-79568148 | MS.gene56128:CDS | 50.0% | |
| GTTCCAATTGCAAGGAAGCC+AGG | + | chr7.4:79566062-79566081 | None:intergenic | 50.0% | |
| TAGCTACGACAGGTCAAGAC+AGG | + | chr7.4:79568122-79568141 | None:intergenic | 50.0% | |
| TTCCCTGGCTTCCTTGCAAT+TGG | - | chr7.4:79566056-79566075 | MS.gene56128:intron | 50.0% | |
| ! | CATCTTCTTGCAGGGAGCAT+TGG | - | chr7.4:79568387-79568406 | MS.gene56128:intron | 50.0% |
| ! | CCTCGTGAGTTTAGCTCAGT+TGG | - | chr7.4:79567033-79567052 | MS.gene56128:intron | 50.0% |
| CCGACAACGTTAGCTACGAC+AGG | + | chr7.4:79568132-79568151 | None:intergenic | 55.0% | |
| GAGCGTGAGTTAACTCCCGT+TGG | + | chr7.4:79569009-79569028 | None:intergenic | 55.0% | |
| TATGGGCTCCAGCCTCAAAG+TGG | + | chr7.4:79569300-79569319 | None:intergenic | 55.0% | |
| AAGGTCCGGGGTTCGAACCC+CGG | - | chr7.4:79567085-79567104 | MS.gene56128:intron | 65.0% | |
| GGTGGCCGGGGTTCGAACCC+CGG | + | chr7.4:79567093-79567112 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 79564664 | 79569423 | 79564664 | ID=MS.gene56128 |
| chr7.4 | mRNA | 79564664 | 79569423 | 79564664 | ID=MS.gene56128.t1;Parent=MS.gene56128 |
| chr7.4 | exon | 79569418 | 79569423 | 79569418 | ID=MS.gene56128.t1.exon1;Parent=MS.gene56128.t1 |
| chr7.4 | CDS | 79569418 | 79569423 | 79569418 | ID=cds.MS.gene56128.t1;Parent=MS.gene56128.t1 |
| chr7.4 | exon | 79569243 | 79569312 | 79569243 | ID=MS.gene56128.t1.exon2;Parent=MS.gene56128.t1 |
| chr7.4 | CDS | 79569243 | 79569312 | 79569243 | ID=cds.MS.gene56128.t1;Parent=MS.gene56128.t1 |
| chr7.4 | exon | 79567381 | 79568243 | 79567381 | ID=MS.gene56128.t1.exon3;Parent=MS.gene56128.t1 |
| chr7.4 | CDS | 79567381 | 79568243 | 79567381 | ID=cds.MS.gene56128.t1;Parent=MS.gene56128.t1 |
| chr7.4 | exon | 79565659 | 79565848 | 79565659 | ID=MS.gene56128.t1.exon4;Parent=MS.gene56128.t1 |
| chr7.4 | CDS | 79565659 | 79565848 | 79565659 | ID=cds.MS.gene56128.t1;Parent=MS.gene56128.t1 |
| chr7.4 | exon | 79564664 | 79564683 | 79564664 | ID=MS.gene56128.t1.exon5;Parent=MS.gene56128.t1 |
| chr7.4 | CDS | 79564664 | 79564683 | 79564664 | ID=cds.MS.gene56128.t1;Parent=MS.gene56128.t1 |
| Gene Sequence |
| Protein sequence |
