AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56979

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56979.t1 MTR_5g018350 93.082 159 11 0 1 159 6 164 2.43e-109 312
MS.gene56979.t1 MTR_5g018365 74.051 158 41 0 2 159 12 169 3.39e-82 243
MS.gene56979.t1 MTR_8g079120 58.750 160 66 0 2 161 53 212 3.39e-68 206
MS.gene56979.t1 MTR_8g079120 58.861 158 65 0 2 159 11 168 2.17e-66 203
MS.gene56979.t1 MTR_5g018320 44.785 163 83 2 2 159 5 165 5.77e-45 149
MS.gene56979.t1 MTR_5g018300 44.785 163 83 2 2 159 8 168 1.13e-44 148
MS.gene56979.t1 MTR_8g007675 45.062 162 83 3 2 159 32 191 1.14e-41 141
MS.gene56979.t1 MTR_8g007670 45.399 163 81 2 2 159 7 166 1.78e-41 140
MS.gene56979.t1 MTR_3g464040 42.857 161 85 2 2 159 19 175 8.10e-41 138
MS.gene56979.t1 MTR_8g008500 44.172 163 86 3 2 159 27 189 4.42e-40 137
MS.gene56979.t1 MTR_8g008505 41.975 162 87 2 2 159 28 186 2.88e-39 134
MS.gene56979.t1 MTR_8g007670 56.311 103 45 0 2 104 7 109 1.31e-38 131
MS.gene56979.t1 MTR_8g008660 40.881 159 91 2 2 159 27 183 1.09e-37 130
MS.gene56979.t1 MTR_5g018280 52.885 104 49 0 2 105 8 111 2.87e-37 129
MS.gene56979.t1 MTR_5g068100 51.485 101 49 0 2 102 30 130 3.89e-32 116
MS.gene56979.t1 MTR_3g093730 49.505 101 51 0 2 102 36 136 1.09e-31 114
MS.gene56979.t1 MTR_7g015220 38.728 173 96 4 2 167 124 293 2.77e-31 115
MS.gene56979.t1 MTR_3g093730 49.020 102 52 0 1 102 35 136 5.08e-31 113
MS.gene56979.t1 MTR_3g005410 38.150 173 96 4 3 167 95 264 4.03e-28 107
MS.gene56979.t1 MTR_1g034410 46.053 76 35 1 23 92 39 114 1.98e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56979.t1 AT2G23600 52.147 163 74 2 2 160 24 186 1.88e-54 171
MS.gene56979.t1 AT2G23590 49.398 166 79 1 2 167 27 187 4.58e-53 170
MS.gene56979.t1 AT2G23600 51.852 162 74 2 2 159 9 170 1.14e-52 168
MS.gene56979.t1 AT2G23600 51.852 162 74 2 2 159 24 185 1.60e-52 168
MS.gene56979.t1 AT5G10300 52.795 161 74 1 2 160 6 166 2.55e-52 166
MS.gene56979.t1 AT2G23620 51.235 162 75 2 2 159 9 170 2.91e-51 165
MS.gene56979.t1 AT5G10300 52.500 160 74 1 2 159 6 165 1.52e-50 163
MS.gene56979.t1 AT2G23610 49.375 160 77 2 2 157 9 168 1.12e-49 160
MS.gene56979.t1 AT2G23610 60.526 114 44 1 2 114 9 122 2.15e-46 151
MS.gene56979.t1 AT2G23580 48.125 160 78 2 3 157 9 168 8.55e-46 149
MS.gene56979.t1 AT2G23580 48.125 160 78 3 3 157 9 168 2.17e-45 150
MS.gene56979.t1 AT2G23560 44.586 157 85 2 3 157 9 165 2.28e-43 144
MS.gene56979.t1 AT2G23550 43.860 171 87 3 2 165 15 183 2.55e-43 143
MS.gene56979.t1 AT4G37150 42.105 171 93 4 2 167 3 172 1.45e-42 142
MS.gene56979.t1 AT2G23550 44.172 163 82 3 2 157 15 175 3.20e-41 139
MS.gene56979.t1 AT2G23550 43.478 161 86 3 2 157 8 168 3.26e-41 139
MS.gene56979.t1 AT4G37140 53.774 106 49 0 2 107 3 108 4.83e-41 135
MS.gene56979.t1 AT3G50440 48.120 133 69 0 3 135 22 154 3.17e-40 137
MS.gene56979.t1 AT4G37140 54.444 90 41 0 2 91 3 92 2.76e-34 116
MS.gene56979.t1 AT3G10870 46.535 101 54 0 2 102 20 120 3.51e-31 114
MS.gene56979.t1 AT3G29770 54.455 101 46 0 2 102 138 238 1.45e-29 111
MS.gene56979.t1 AT1G33990 48.624 109 56 0 3 111 98 206 5.78e-29 109
MS.gene56979.t1 AT1G69240 38.596 171 100 3 2 167 187 357 1.49e-28 109
MS.gene56979.t1 AT1G26360 50.495 101 50 0 2 102 189 289 2.21e-28 109
MS.gene56979.t1 AT4G09900 47.706 109 57 0 3 111 99 207 2.63e-28 107
MS.gene56979.t1 AT5G58310 34.911 169 96 4 2 159 5 170 5.86e-26 99.8
MS.gene56979.t1 AT2G23550 35.625 160 71 3 2 157 8 139 3.95e-25 97.1
MS.gene56979.t1 AT4G16690 44.118 102 57 0 1 102 11 112 8.37e-23 91.7
MS.gene56979.t1 AT3G29770 50.685 73 36 0 2 74 138 210 1.19e-16 75.5

Find 39 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGAAACATTGATACGTTT+TGG 0.255477 5.1:+10453086 MS.gene56979:CDS
GATGGTTTGTGGTGGGTATC+AGG 0.282227 5.1:-10451887 None:intergenic
TTTGTTCTGGTACATGGTTC+TGG 0.283508 5.1:+10451581 MS.gene56979:CDS
GTCCCAGAGAGGTATCTTTA+TGG 0.292523 5.1:+10453144 MS.gene56979:CDS
GACTCTGAGGTCTCATTTGA+TGG 0.342472 5.1:+10453062 MS.gene56979:CDS
CTGGCATGGGTGCCTGGAAT+TGG 0.345133 5.1:+10451600 MS.gene56979:CDS
TATTGAAAGATACCGAAGTA+TGG 0.355926 5.1:+10453031 MS.gene56979:CDS
CTTAAGCTTGTACCAATTCC+AGG 0.385338 5.1:-10451612 None:intergenic
ATGGTTCTGGCATGGGTGCC+TGG 0.389388 5.1:+10451594 MS.gene56979:CDS
GTTCTAGTGGGACATAGCTT+TGG 0.421621 5.1:+10451788 MS.gene56979:CDS
CTGGTACATGGTTCTGGCAT+GGG 0.439841 5.1:+10451587 MS.gene56979:CDS
AATAAATTCTCACCAGTTGT+AGG 0.453637 5.1:-10451916 None:intergenic
AACATTGTGGACAGTAGCTT+GGG 0.470048 5.1:-10453110 None:intergenic
ACCATCTTATGTCCTACAAC+TGG 0.471834 5.1:+10451904 MS.gene56979:CDS
CTAGTGGGACATAGCTTTGG+AGG 0.481053 5.1:+10451791 MS.gene56979:CDS
ACCAGTTGTAGGACATAAGA+TGG 0.487201 5.1:-10451905 None:intergenic
ACGCCATAAAGATACCTCTC+TGG 0.500443 5.1:-10453147 None:intergenic
AAGCCACGGTTAGAATCATC+TGG 0.501623 5.1:+10451632 MS.gene56979:CDS
GAACATTGTGGACAGTAGCT+TGG 0.509046 5.1:-10453111 None:intergenic
TCTGGTACATGGTTCTGGCA+TGG 0.509920 5.1:+10451586 MS.gene56979:CDS
GACATAAGATGGTTTGTGGT+GGG 0.511066 5.1:-10451894 None:intergenic
TTAGATTTCATGATCTCACT+TGG 0.524620 5.1:+10451749 MS.gene56979:CDS
ATTGAAAGATACCGAAGTAT+GGG 0.554517 5.1:+10453032 MS.gene56979:CDS
ATACCTCTCTGGGACTGAGT+TGG 0.554830 5.1:-10453136 None:intergenic
CGCCATAAAGATACCTCTCT+GGG 0.559378 5.1:-10453146 None:intergenic
GCACTTGATCTTGCAGCTAG+TGG 0.572223 5.1:+10451668 MS.gene56979:CDS
GTAGGACATAAGATGGTTTG+TGG 0.573095 5.1:-10451898 None:intergenic
AGCTAGTGGCATCAACACTC+AGG 0.598551 5.1:+10451682 MS.gene56979:CDS
AGTCTAACCATCCCATACTT+CGG 0.612114 5.1:-10453043 None:intergenic
TATGGGATGGTTAGACTCTG+AGG 0.622295 5.1:+10453049 MS.gene56979:CDS
GTTAGAATCATCTGGTCACA+AGG 0.623697 5.1:+10451640 MS.gene56979:CDS
AATGAGTATAGCCCTTGCAA+TGG 0.628052 5.1:+10451814 MS.gene56979:CDS
TGACCAGATGATTCTAACCG+TGG 0.644087 5.1:-10451635 None:intergenic
AAAGATACCGAAGTATGGGA+TGG 0.650263 5.1:+10453036 MS.gene56979:CDS
GAGATCATGAAATCTAACAA+AGG 0.657969 5.1:-10451743 None:intergenic
GGACATAAGATGGTTTGTGG+TGG 0.665403 5.1:-10451895 None:intergenic
ATTGGTACAAGCTTAAGCCA+CGG 0.667332 5.1:+10451618 MS.gene56979:CDS
CTTCCAACTCAGTCCCAGAG+AGG 0.691808 5.1:+10453133 MS.gene56979:CDS
ACTGAGTTGGAAGAACATTG+TGG 0.726493 5.1:-10453123 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAAAAATTTACAG+GGG - chr5.1:10452231-10452250 None:intergenic 10.0%
!! GTAAATAAAAAAAAATTTAC+AGG - chr5.1:10452233-10452252 None:intergenic 10.0%
!! TAAATCAAAAAAAAATTACA+GGG + chr5.1:10452391-10452410 MS.gene56979:intron 10.0%
!!! AAAATAAAATTTTTTATAGG+GGG + chr5.1:10452368-10452387 MS.gene56979:intron 10.0%
!!! ATCTATGTAAATTTTAATTA+GGG - chr5.1:10452464-10452483 None:intergenic 10.0%
!!! CAAAATAAAATTTTTTATAG+GGG + chr5.1:10452367-10452386 MS.gene56979:intron 10.0%
!! AAAAGATTCATTTATAATCA+AGG - chr5.1:10452787-10452806 None:intergenic 15.0%
!! AAATCAAAAAAAAATTACAG+GGG + chr5.1:10452392-10452411 MS.gene56979:intron 15.0%
!! GTAAATCAAAAAAAAATTAC+AGG + chr5.1:10452390-10452409 MS.gene56979:intron 15.0%
!! GTAAATTAAAAATGAACATT+AGG - chr5.1:10452985-10453004 None:intergenic 15.0%
!!! AAAACAATTTTTTTTTACAG+TGG - chr5.1:10452256-10452275 None:intergenic 15.0%
!!! AAACAATTTTTTTTTACAGT+GGG - chr5.1:10452255-10452274 None:intergenic 15.0%
!!! AAATAAAATTGGTTTTTGTT+TGG + chr5.1:10452327-10452346 MS.gene56979:intron 15.0%
!!! AAATTTTAATTAGGGTTAAT+AGG - chr5.1:10452456-10452475 None:intergenic 15.0%
!!! GATCTATGTAAATTTTAATT+AGG - chr5.1:10452465-10452484 None:intergenic 15.0%
!! AATCAAAAAAAAATTACAGG+GGG + chr5.1:10452393-10452412 MS.gene56979:intron 20.0%
!! TACTCTCATATTAATTGAAA+GGG + chr5.1:10452014-10452033 MS.gene56979:intron 20.0%
!! TATTAATTGAAAGGGTTAAT+AGG + chr5.1:10452022-10452041 MS.gene56979:intron 20.0%
!! TTACTCTCATATTAATTGAA+AGG + chr5.1:10452013-10452032 MS.gene56979:intron 20.0%
!!! AAGAAATTTTCGTTTTTGTT+TGG - chr5.1:10452298-10452317 None:intergenic 20.0%
!!! ACGAAAATTTAGTTTTGTTA+AGG + chr5.1:10452941-10452960 MS.gene56979:intron 20.0%
!!! ATTCCAACTAAAATTTTTCT+AGG - chr5.1:10451848-10451867 None:intergenic 20.0%
!!! TTTCCTAGAAAAATTTTAGT+TGG + chr5.1:10451842-10451861 MS.gene56979:CDS 20.0%
! AAAATTTAAACGTAACAACC+CGG + chr5.1:10452489-10452508 MS.gene56979:intron 25.0%
! AATGCTATCATCTATAAGTT+TGG - chr5.1:10451995-10452014 None:intergenic 25.0%
! TCATTCTTAACAAATTAGAC+CGG - chr5.1:10452511-10452530 None:intergenic 25.0%
! TGCTTATAATAATGACTGAA+GGG - chr5.1:10452069-10452088 None:intergenic 25.0%
! TGTAAATCTAAACATTCACA+AGG - chr5.1:10452901-10452920 None:intergenic 25.0%
! TTGCTTATAATAATGACTGA+AGG - chr5.1:10452070-10452089 None:intergenic 25.0%
!!! AAATGAAAAAGTAGTTCTAG+TGG + chr5.1:10451775-10451794 MS.gene56979:CDS 25.0%
!!! AATGAAAAAGTAGTTCTAGT+GGG + chr5.1:10451776-10451795 MS.gene56979:CDS 25.0%
!!! ACTAGAACTACTTTTTCATT+TGG - chr5.1:10451776-10451795 None:intergenic 25.0%
!!! TTTTAATTTACCTGACCTTT+GGG + chr5.1:10452994-10453013 MS.gene56979:intron 25.0%
!!! TTTTGATTTACTCTCCTAAT+AGG + chr5.1:10452272-10452291 MS.gene56979:intron 25.0%
!!! TTTTTAATTTACCTGACCTT+TGG + chr5.1:10452993-10453012 MS.gene56979:intron 25.0%
AATAAATTCTCACCAGTTGT+AGG - chr5.1:10451919-10451938 None:intergenic 30.0%
ATCTAAACATTCACAAGGAT+CGG - chr5.1:10452896-10452915 None:intergenic 30.0%
ATTGAAAGATACCGAAGTAT+GGG + chr5.1:10453032-10453051 MS.gene56979:CDS 30.0%
CAACTGGTGAGAATTTATTA+TGG + chr5.1:10451920-10451939 MS.gene56979:intron 30.0%
CATTCTTAACAAATTAGACC+GGG - chr5.1:10452510-10452529 None:intergenic 30.0%
GAGATCATGAAATCTAACAA+AGG - chr5.1:10451746-10451765 None:intergenic 30.0%
TATTGAAAGATACCGAAGTA+TGG + chr5.1:10453031-10453050 MS.gene56979:CDS 30.0%
TTAGATTTCATGATCTCACT+TGG + chr5.1:10451749-10451768 MS.gene56979:CDS 30.0%
! AACGAAACATTGATACGTTT+TGG + chr5.1:10453086-10453105 MS.gene56979:CDS 30.0%
! AGGAAAATTTTCCATTGCAA+GGG - chr5.1:10451828-10451847 None:intergenic 30.0%
! GTTTTGCTTATAATAGTGAC+CGG + chr5.1:10452181-10452200 MS.gene56979:intron 30.0%
! TAGGAAAATTTTCCATTGCA+AGG - chr5.1:10451829-10451848 None:intergenic 30.0%
! TTTTGACGCCCATAAAAAAA+TGG - chr5.1:10452671-10452690 None:intergenic 30.0%
!! ACGCATGTAATTTTAGTGAA+TGG + chr5.1:10452603-10452622 MS.gene56979:intron 30.0%
!! TGTAATTTTAGTGAATGGCA+TGG + chr5.1:10452608-10452627 MS.gene56979:intron 30.0%
!!! ACTAGGGTACCATTTTTTTA+TGG + chr5.1:10452659-10452678 MS.gene56979:intron 30.0%
!!! ATTTTGATTTACCCCCTTAT+AGG - chr5.1:10452353-10452372 None:intergenic 30.0%
!!! CTAGGGTACCATTTTTTTAT+GGG + chr5.1:10452660-10452679 MS.gene56979:intron 30.0%
AAAATTACAGGGGGAAAAAC+CGG + chr5.1:10452402-10452421 MS.gene56979:intron 35.0%
ATACTATCCATAACACCCAA+AGG - chr5.1:10453012-10453031 None:intergenic 35.0%
CATTCATTAGATGATGCATG+TGG + chr5.1:10452107-10452126 MS.gene56979:intron 35.0%
CCTGTAATATAGGTCATTTC+CGG - chr5.1:10452424-10452443 None:intergenic 35.0%
CGGAAATGACCTATATTACA+GGG + chr5.1:10452422-10452441 MS.gene56979:intron 35.0%
GAAATGACCTATATTACAGG+GGG + chr5.1:10452424-10452443 MS.gene56979:intron 35.0%
GGAAATGACCTATATTACAG+GGG + chr5.1:10452423-10452442 MS.gene56979:intron 35.0%
! ATGCATTTTGTTCTGGTACA+TGG + chr5.1:10451575-10451594 MS.gene56979:CDS 35.0%
! GTTTTTACCCCCTGTAATAT+AGG - chr5.1:10452434-10452453 None:intergenic 35.0%
!! ACTACTTTATTGATTCGCTG+AGG + chr5.1:10452852-10452871 MS.gene56979:intron 35.0%
!! GGTTTTTGTTTGGCCTATAA+GGG + chr5.1:10452337-10452356 MS.gene56979:intron 35.0%
!! GTTTTTGTTTGGCCTATAAG+GGG + chr5.1:10452338-10452357 MS.gene56979:intron 35.0%
!! TCGTTTTTGTTTGGCCTATT+AGG - chr5.1:10452289-10452308 None:intergenic 35.0%
!! TGGTTTTTGTTTGGCCTATA+AGG + chr5.1:10452336-10452355 MS.gene56979:intron 35.0%
!! TTTTTGTTTGGCCTATAAGG+GGG + chr5.1:10452339-10452358 MS.gene56979:intron 35.0%
AAAGATACCGAAGTATGGGA+TGG + chr5.1:10453036-10453055 MS.gene56979:CDS 40.0%
AACATTGTGGACAGTAGCTT+GGG - chr5.1:10453113-10453132 None:intergenic 40.0%
AATGAGTATAGCCCTTGCAA+TGG + chr5.1:10451814-10451833 MS.gene56979:CDS 40.0%
ACCAGTTGTAGGACATAAGA+TGG - chr5.1:10451908-10451927 None:intergenic 40.0%
ACCATCTTATGTCCTACAAC+TGG + chr5.1:10451904-10451923 MS.gene56979:CDS 40.0%
AGTCTAACCATCCCATACTT+CGG - chr5.1:10453046-10453065 None:intergenic 40.0%
ATTGGTACAAGCTTAAGCCA+CGG + chr5.1:10451618-10451637 MS.gene56979:CDS 40.0%
CCGGAAATGACCTATATTAC+AGG + chr5.1:10452421-10452440 MS.gene56979:intron 40.0%
CTTAAGCTTGTACCAATTCC+AGG - chr5.1:10451615-10451634 None:intergenic 40.0%
GTAGGACATAAGATGGTTTG+TGG - chr5.1:10451901-10451920 None:intergenic 40.0%
GTTAGAATCATCTGGTCACA+AGG + chr5.1:10451640-10451659 MS.gene56979:CDS 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr5.1:10452185-10452204 MS.gene56979:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr5.1:10452184-10452203 MS.gene56979:intron 40.0%
TTTGTTCTGGTACATGGTTC+TGG + chr5.1:10451581-10451600 MS.gene56979:CDS 40.0%
! ACTGAGTTGGAAGAACATTG+TGG - chr5.1:10453126-10453145 None:intergenic 40.0%
! CTGAAGGGTGTATATTACAG+AGG - chr5.1:10452054-10452073 None:intergenic 40.0%
! GACATAAGATGGTTTGTGGT+GGG - chr5.1:10451897-10451916 None:intergenic 40.0%
AAGCCACGGTTAGAATCATC+TGG + chr5.1:10451632-10451651 MS.gene56979:CDS 45.0%
ACGCCATAAAGATACCTCTC+TGG - chr5.1:10453150-10453169 None:intergenic 45.0%
ATCCATAACACCCAAAGGTC+AGG - chr5.1:10453007-10453026 None:intergenic 45.0%
CGCCATAAAGATACCTCTCT+GGG - chr5.1:10453149-10453168 None:intergenic 45.0%
GAACATTGTGGACAGTAGCT+TGG - chr5.1:10453114-10453133 None:intergenic 45.0%
GTTCTAGTGGGACATAGCTT+TGG + chr5.1:10451788-10451807 MS.gene56979:CDS 45.0%
TACCTGACCTTTGGGTGTTA+TGG + chr5.1:10453002-10453021 MS.gene56979:intron 45.0%
TATGGGATGGTTAGACTCTG+AGG + chr5.1:10453049-10453068 MS.gene56979:CDS 45.0%
TGACCAGATGATTCTAACCG+TGG - chr5.1:10451638-10451657 None:intergenic 45.0%
! GGACATAAGATGGTTTGTGG+TGG - chr5.1:10451898-10451917 None:intergenic 45.0%
!! GACTCTGAGGTCTCATTTGA+TGG + chr5.1:10453062-10453081 MS.gene56979:CDS 45.0%
!! GTCCCAGAGAGGTATCTTTA+TGG + chr5.1:10453144-10453163 MS.gene56979:CDS 45.0%
!! TAAATAAAAAAAAATTTACA+GGG - chr5.1:10452232-10452251 None:intergenic 5.0%
!! TTGAAAAAATAAAATAAAAT+TGG + chr5.1:10452316-10452335 MS.gene56979:intron 5.0%
!!! ATCAAAATAAAATTTTTTAT+AGG + chr5.1:10452365-10452384 MS.gene56979:intron 5.0%
!!! TCAAAATAAAATTTTTTATA+GGG + chr5.1:10452366-10452385 MS.gene56979:intron 5.0%
AGCTAGTGGCATCAACACTC+AGG + chr5.1:10451682-10451701 MS.gene56979:CDS 50.0%
CGAAAATGACCTACACCCTC+CGG - chr5.1:10452203-10452222 None:intergenic 50.0%
GCACTTGATCTTGCAGCTAG+TGG + chr5.1:10451668-10451687 MS.gene56979:CDS 50.0%
TAGTGAATGGCATGGCCCTA+GGG + chr5.1:10452616-10452635 MS.gene56979:intron 50.0%
TTAGTGAATGGCATGGCCCT+AGG + chr5.1:10452615-10452634 MS.gene56979:intron 50.0%
! TAATAGTGACCGGAGGGTGT+AGG + chr5.1:10452191-10452210 MS.gene56979:intron 50.0%
!! ATACCTCTCTGGGACTGAGT+TGG - chr5.1:10453139-10453158 None:intergenic 50.0%
!! CGGAGGGTGTAGGTCATTTT+CGG + chr5.1:10452201-10452220 MS.gene56979:intron 50.0%
!! CTAGTGGGACATAGCTTTGG+AGG + chr5.1:10451791-10451810 MS.gene56979:CDS 50.0%
!! CTGGTACATGGTTCTGGCAT+GGG + chr5.1:10451587-10451606 MS.gene56979:CDS 50.0%
!! GATGGTTTGTGGTGGGTATC+AGG - chr5.1:10451890-10451909 None:intergenic 50.0%
!! TCTGGTACATGGTTCTGGCA+TGG + chr5.1:10451586-10451605 MS.gene56979:CDS 50.0%
AGTGAATGGCATGGCCCTAG+GGG + chr5.1:10452617-10452636 MS.gene56979:intron 55.0%
CTTCCAACTCAGTCCCAGAG+AGG + chr5.1:10453133-10453152 MS.gene56979:CDS 55.0%
CTGGCATGGGTGCCTGGAAT+TGG + chr5.1:10451600-10451619 MS.gene56979:CDS 60.0%
GCGGGAGGGGCAGTAAACTA+GGG + chr5.1:10452643-10452662 MS.gene56979:intron 60.0%
!! ATGGTTCTGGCATGGGTGCC+TGG + chr5.1:10451594-10451613 MS.gene56979:CDS 60.0%
AATGGCATGGCCCTAGGGGC+AGG + chr5.1:10452621-10452640 MS.gene56979:intron 65.0%
GGCGGGAGGGGCAGTAAACT+AGG + chr5.1:10452642-10452661 MS.gene56979:intron 65.0%
GCATGGCCCTAGGGGCAGGC+GGG + chr5.1:10452625-10452644 MS.gene56979:intron 75.0%
GGCATGGCCCTAGGGGCAGG+CGG + chr5.1:10452624-10452643 MS.gene56979:intron 75.0%
! GCCCCTCCCGCCTGCCCCTA+GGG - chr5.1:10452634-10452653 None:intergenic 80.0%
! GCCCTAGGGGCAGGCGGGAG+GGG + chr5.1:10452630-10452649 MS.gene56979:intron 80.0%
! GGCCCTAGGGGCAGGCGGGA+GGG + chr5.1:10452629-10452648 MS.gene56979:intron 80.0%
! TGCCCCTCCCGCCTGCCCCT+AGG - chr5.1:10452635-10452654 None:intergenic 80.0%
! TGGCCCTAGGGGCAGGCGGG+AGG + chr5.1:10452628-10452647 MS.gene56979:intron 80.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 10451575 10453181 10451575 ID=MS.gene56979
chr5.1 mRNA 10451575 10453181 10451575 ID=MS.gene56979.t1;Parent=MS.gene56979
chr5.1 exon 10451575 10451925 10451575 ID=MS.gene56979.t1.exon1;Parent=MS.gene56979.t1
chr5.1 CDS 10451575 10451925 10451575 ID=cds.MS.gene56979.t1;Parent=MS.gene56979.t1
chr5.1 exon 10453029 10453181 10453029 ID=MS.gene56979.t1.exon2;Parent=MS.gene56979.t1
chr5.1 CDS 10453029 10453181 10453029 ID=cds.MS.gene56979.t1;Parent=MS.gene56979.t1
Gene Sequence

>MS.gene56979

ATGCATTTTGTTCTGGTACATGGTTCTGGCATGGGTGCCTGGAATTGGTACAAGCTTAAGCCACGGTTAGAATCATCTGGTCACAAGGTCACAGCACTTGATCTTGCAGCTAGTGGCATCAACACTCAGGAAATTCAAGATGTTGATACTTTTGCTGAGTATTCTAAGCCTTTGTTAGATTTCATGATCTCACTTGGTCCAAATGAAAAAGTAGTTCTAGTGGGACATAGCTTTGGAGGAATGAGTATAGCCCTTGCAATGGAAAATTTTCCTAGAAAAATTTTAGTTGGAATTTTCTTAGCTGCTTTTATTCCTGATACCCACCACAAACCATCTTATGTCCTACAACTGGTGAGAATTTATTATGGTCAGCTAATTTATACGTACATTTTGCAATATAAATGTCATTTATTTTGTCCAAACTTATAGATGATAGCATTACTCTCATATTAATTGAAAGGGTTAATAGGTCTTTACCTCTGTAATATACACCCTTCAGTCATTATTATAAGCAAAACTTTTATTTTATGTTCATTCATTAGATGATGCATGTGGTCTATAATAAAGATCATACACATCATTAATTGAATGAATCTAAAATACAAAGTTTTGCTTATAATAGTGACCGGAGGGTGTAGGTCATTTTCGGTTTTCCCCTGTAAATTTTTTTTTATTTACCCACTGTAAAAAAAAATTGTTTTGATTTACTCTCCTAATAGGCCAAACAAAAACGAAAATTTCTTGAAAAAATAAAATAAAATTGGTTTTTGTTTGGCCTATAAGGGGGTAAATCAAAATAAAATTTTTTATAGGGGGTAAATCAAAAAAAAATTACAGGGGGAAAAACCGGAAATGACCTATATTACAGGGGGTAAAAACCTATTAACCCTAATTAAAATTTACATAGATCACATAAAATTTAAACGTAACAACCCGGTCTAATTTGTTAAGAATGATTTACAAAATAGTGATGTCTAGTTGAATTTCAATAAATAAAAAGAGTATATGTTTAGAAGAGAGTGTCTCTTACGCATGTAATTTTAGTGAATGGCATGGCCCTAGGGGCAGGCGGGAGGGGCAGTAAACTAGGGTACCATTTTTTTATGGGCGTCAAAATTATTATTTTTACTTAGTTAAGTCAGTACGACATAGATATATTTCTTTTTAATTCGATTTGATTAATTCTATTAAAAATATATTTTTATAAAACCTTGATTATAAATGAATCTTTTACAACAAAAATGCAAGAAGAAAGACATTTTAATAATTAAAAGAGCACTACTTTATTGATTCGCTGAGGATATAAAAAATCTTTGAACCGATCCTTGTGAATGTTTAGATTTACAGTGAATTTGAAGAAATTCTAACGAAAATTTAGTTTTGTTAAGGCTTCAAAATTTCATTAATCCTAATGTTCATTTTTAATTTACCTGACCTTTGGGTGTTATGGATAGTATATTGAAAGATACCGAAGTATGGGATGGTTAGACTCTGAGGTCTCATTTGATGGAAACGAAACATTGATACGTTTTGGACCCAAGCTACTGTCCACAATGTTCTTCCAACTCAGTCCCAGAGAGGTATCTTTATGGCGTCTAATCATGTAG
Protein sequence

>MS.gene56979.t1

MHFVLVHGSGMGAWNWYKLKPRLESSGHKVTALDLAASGINTQEIQDVDTFAEYSKPLLDFMISLGPNEKVVLVGHSFGGMSIALAMENFPRKILVGIFLAAFIPDTHHKPSYVLQLYIERYRSMGWLDSEVSFDGNETLIRFGPKLLSTMFFQLSPREVSLWRLIM