Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57051.t1 | AFK35673.1 | 80.8 | 78 | 3 | 1 | 110 | 175 | 15 | 92 | 3.40E-24 | 122.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57051.t1 | Q43207 | 66.7 | 75 | 12 | 2 | 113 | 175 | 21 | 94 | 4.5e-17 | 89.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57051.t1 | G7LF61 | 80.8 | 78 | 3 | 1 | 110 | 175 | 15 | 92 | 2.4e-24 | 122.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049404 | MS.gene57051 | 0.802125 | 6.51E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene57051 | 0.807351 | 5.27E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene57051 | 0.803613 | 3.21E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene57051 | 0.821948 | 3.08E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene57051 | 0.811767 | 5.94E-51 | -1.69E-46 |
| MS.gene052582 | MS.gene57051 | 0.802922 | 4.46E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene57051 | 0.808896 | 2.47E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene57051 | 0.802201 | 6.28E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene57051 | 0.818666 | 1.74E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene57051 | 0.810711 | 1.01E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene57051 | 0.800206 | 1.61E-48 | -1.69E-46 |
| MS.gene058010 | MS.gene57051 | 0.801984 | 6.96E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene57051 | 0.810488 | 1.12E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57051.t1 | MTR_8g432580 | 86.667 | 75 | 10 | 0 | 18 | 92 | 52 | 126 | 1.53e-23 | 92.8 |
| MS.gene57051.t1 | MTR_8g012340 | 78.205 | 78 | 5 | 1 | 110 | 175 | 15 | 92 | 6.87e-23 | 96.7 |
| MS.gene57051.t1 | MTR_4g074930 | 87.838 | 74 | 8 | 1 | 14 | 87 | 28 | 100 | 7.51e-23 | 96.7 |
| MS.gene57051.t1 | MTR_4g074930 | 87.838 | 74 | 8 | 1 | 14 | 87 | 28 | 100 | 8.39e-23 | 96.7 |
| MS.gene57051.t1 | MTR_4g074930 | 87.838 | 74 | 8 | 1 | 14 | 87 | 28 | 100 | 8.78e-23 | 96.7 |
| MS.gene57051.t1 | MTR_4g074930 | 87.838 | 74 | 8 | 1 | 14 | 87 | 28 | 100 | 9.21e-23 | 96.7 |
| MS.gene57051.t1 | MTR_8g080980 | 58.621 | 87 | 14 | 2 | 111 | 175 | 4 | 90 | 4.30e-21 | 91.7 |
| MS.gene57051.t1 | MTR_7g053470 | 57.143 | 77 | 15 | 2 | 111 | 175 | 16 | 86 | 1.72e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57051.t1 | AT5G48570 | 63.889 | 72 | 14 | 1 | 117 | 176 | 29 | 100 | 6.48e-20 | 88.2 |
| MS.gene57051.t1 | AT3G25230 | 69.697 | 66 | 7 | 2 | 122 | 175 | 27 | 91 | 3.34e-18 | 83.2 |
| MS.gene57051.t1 | AT3G25230 | 69.697 | 66 | 7 | 2 | 122 | 175 | 27 | 91 | 4.04e-18 | 83.2 |
Find 57 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGTGTAGTTCATTATAC+TGG | 0.313269 | 5.2:-8160719 | MS.gene57051:intron |
| CCTCTGAAGTGGTCTCTGGC+TGG | 0.335134 | 5.2:+8161422 | None:intergenic |
| CAAGAAGGAGGAAAGTAGTT+TGG | 0.335928 | 5.2:-8161660 | MS.gene57051:CDS |
| TTAGTTGGGGTCTTCTTTGA+AGG | 0.356776 | 5.2:+8161466 | None:intergenic |
| ACTACTTTCAATTTCACTCT+TGG | 0.361943 | 5.2:-8160650 | MS.gene57051:CDS |
| CTCTGAAGTGGTCTCTGGCT+GGG | 0.379329 | 5.2:+8161423 | None:intergenic |
| AGTTTGATTCTAGCAGAGAT+AGG | 0.388381 | 5.2:-8160676 | MS.gene57051:CDS |
| TATACTGGAACGTTGCTTGA+TGG | 0.393092 | 5.2:-8160704 | MS.gene57051:CDS |
| TCCCACATCGTACTATTATC+AGG | 0.413728 | 5.2:-8160075 | MS.gene57051:CDS |
| GATTCCTCTGAAGTGGTCTC+TGG | 0.415465 | 5.2:+8161418 | None:intergenic |
| CACTTCTTCCTCATCGGAAG+AGG | 0.423585 | 5.2:+8161378 | None:intergenic |
| CTTCAAGAATAATAATAGAT+AGG | 0.425201 | 5.2:+8160452 | None:intergenic |
| CGCCAAGCAAAAGGCGTTGA+AGG | 0.441849 | 5.2:-8161687 | MS.gene57051:CDS |
| GGGGTCTTCTTTGAAGGAGC+AGG | 0.444374 | 5.2:+8161472 | None:intergenic |
| CACTTTCACTTCTTCCTCAT+CGG | 0.467568 | 5.2:+8161372 | None:intergenic |
| AAGAAGAAGCTTCTCAAAGA+AGG | 0.467998 | 5.2:-8160838 | MS.gene57051:CDS |
| GTTTGATTCTAGCAGAGATA+GGG | 0.475863 | 5.2:-8160675 | MS.gene57051:CDS |
| TAGGCAGATGGAAGGTGATA+AGG | 0.476180 | 5.2:+8160471 | None:intergenic |
| AGAGGTTGCCGCCAAGCAAA+AGG | 0.479123 | 5.2:-8161696 | MS.gene57051:CDS |
| ATCTATTATTATTCTTGAAG+AGG | 0.490271 | 5.2:-8160449 | MS.gene57051:intron |
| CTCTGAGGAATCTGAGGATG+AGG | 0.511350 | 5.2:-8161630 | MS.gene57051:intron |
| GAAGGAGGAAAGTAGTTTGG+AGG | 0.514144 | 5.2:-8161657 | MS.gene57051:CDS |
| GACTTCGACTTCGCCGGTGC+CGG | 0.516399 | 5.2:-8160916 | MS.gene57051:CDS |
| AATGAAATTAAAAGCATGGC+AGG | 0.519602 | 5.2:-8160107 | MS.gene57051:CDS |
| AATTGGATTATCGCCGGCAC+CGG | 0.525961 | 5.2:+8160903 | None:intergenic |
| GGCGTTGAAGGTAGTCAAGA+AGG | 0.528027 | 5.2:-8161675 | MS.gene57051:CDS |
| GTGGGTACTAGAGAATTCAT+AGG | 0.534544 | 5.2:-8160049 | MS.gene57051:CDS |
| TTCAATTTCACTCTTGGACA+AGG | 0.538952 | 5.2:-8160644 | MS.gene57051:intron |
| CAGTGAGTGCAAAGAAGCAA+GGG | 0.541082 | 5.2:-8161724 | MS.gene57051:CDS |
| CTTTGATATAGGCAAGAGGC+AGG | 0.543584 | 5.2:-8161765 | MS.gene57051:CDS |
| GTCAAATGAAATTAAAAGCA+TGG | 0.545516 | 5.2:-8160111 | MS.gene57051:CDS |
| GCAGGCTGAGGAAGAAGTCA+AGG | 0.547712 | 5.2:-8161747 | MS.gene57051:CDS |
| AGAGTCAGATTCCTCTGAAG+TGG | 0.548311 | 5.2:+8161411 | None:intergenic |
| GCAGTGAGTGCAAAGAAGCA+AGG | 0.558038 | 5.2:-8161725 | MS.gene57051:CDS |
| AATAATAATAGATAGGCAGA+TGG | 0.568838 | 5.2:+8160459 | None:intergenic |
| CTTGAGAATTGGATTATCGC+CGG | 0.576084 | 5.2:+8160897 | None:intergenic |
| CATATGTAGACACTGTCATA+GGG | 0.583382 | 5.2:+8160018 | None:intergenic |
| GGAATCCTCTGAGGAATCTG+AGG | 0.584932 | 5.2:-8161636 | MS.gene57051:CDS |
| TATAGGCAAGAGGCAGGCTG+AGG | 0.588543 | 5.2:-8161759 | MS.gene57051:CDS |
| TTTGATTCTAGCAGAGATAG+GGG | 0.593989 | 5.2:-8160674 | MS.gene57051:CDS |
| TCGTACTATTATCAGGCAAG+TGG | 0.597519 | 5.2:-8160068 | MS.gene57051:CDS |
| AAAGAAGCAAGGGGTAGAAG+AGG | 0.598623 | 5.2:-8161714 | MS.gene57051:CDS |
| AAAGACGACTTCGACTTCGC+CGG | 0.605504 | 5.2:-8160922 | MS.gene57051:intron |
| AAGCTTCTCAAAGAAGGTGA+AGG | 0.613170 | 5.2:-8160832 | MS.gene57051:intron |
| CGGCGATAATCCAATTCTCA+AGG | 0.616014 | 5.2:-8160896 | MS.gene57051:CDS |
| TGCCTGATAATAGTACGATG+TGG | 0.623695 | 5.2:+8160073 | None:intergenic |
| CCAGCCAGAGACCACTTCAG+AGG | 0.625597 | 5.2:-8161422 | MS.gene57051:CDS |
| ATAATAGATAGGCAGATGGA+AGG | 0.627317 | 5.2:+8160463 | None:intergenic |
| TTCACTTTGATATAGGCAAG+AGG | 0.629817 | 5.2:-8161769 | MS.gene57051:CDS |
| CGTACTATTATCAGGCAAGT+GGG | 0.636740 | 5.2:-8160067 | MS.gene57051:CDS |
| GCCTGATAATAGTACGATGT+GGG | 0.647015 | 5.2:+8160074 | None:intergenic |
| TGACAGCTCCTCTTCCGATG+AGG | 0.667005 | 5.2:-8161386 | MS.gene57051:CDS |
| AGTGAGTGCAAAGAAGCAAG+GGG | 0.679652 | 5.2:-8161723 | MS.gene57051:CDS |
| GTTGAAGGTAGTCAAGAAGG+AGG | 0.683060 | 5.2:-8161672 | MS.gene57051:CDS |
| CTCATCCTCAGATTCCTCAG+AGG | 0.686828 | 5.2:+8161631 | None:intergenic |
| GATAATCCAATTCTCAAGGT+CGG | 0.697498 | 5.2:-8160892 | MS.gene57051:CDS |
| TAGTTTGGAGGAATCCTCTG+AGG | 0.723183 | 5.2:-8161645 | MS.gene57051:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTTTGTTATTTTAAT+TGG | - | chr5.2:8161230-8161249 | MS.gene57051:intron | 10.0% |
| !! | AAATCAAACATAGAAATTAA+CGG | + | chr5.2:8161258-8161277 | None:intergenic | 15.0% |
| !!! | ATGTTTAAGATATAAATCAA+AGG | + | chr5.2:8160528-8160547 | None:intergenic | 15.0% |
| !!! | TTAATTTCTATGTTTGATTT+AGG | - | chr5.2:8161258-8161277 | MS.gene57051:intron | 15.0% |
| !! | ATCTATTATTATTCTTGAAG+AGG | - | chr5.2:8161378-8161397 | MS.gene57051:CDS | 20.0% |
| !! | CTTCAAGAATAATAATAGAT+AGG | + | chr5.2:8161378-8161397 | None:intergenic | 20.0% |
| !!! | GTGTAATTATTTTTTTGTTG+CGG | - | chr5.2:8160820-8160839 | MS.gene57051:intron | 20.0% |
| !!! | GTTTTAAAAAACAGAACAAT+AGG | + | chr5.2:8160619-8160638 | None:intergenic | 20.0% |
| !!! | TCTATAATTCACTTTTTAGA+AGG | - | chr5.2:8160642-8160661 | MS.gene57051:intron | 20.0% |
| !!! | TCTTTTATTTTCTTCACAAA+TGG | + | chr5.2:8161620-8161639 | None:intergenic | 20.0% |
| !!! | TTCTAAAAAGTGAATTATAG+AGG | + | chr5.2:8160643-8160662 | None:intergenic | 20.0% |
| ! | AATAATAATAGATAGGCAGA+TGG | + | chr5.2:8161371-8161390 | None:intergenic | 25.0% |
| ! | GATTTCAAACAATAAAAAGC+AGG | - | chr5.2:8161468-8161487 | MS.gene57051:CDS | 25.0% |
| ! | GTCAAATGAAATTAAAAGCA+TGG | - | chr5.2:8161716-8161735 | MS.gene57051:CDS | 25.0% |
| ! | TGTCATCAATAACATATTGT+TGG | - | chr5.2:8161431-8161450 | MS.gene57051:CDS | 25.0% |
| ! | TTATATCTTAAACACTGTGT+TGG | - | chr5.2:8160590-8160609 | MS.gene57051:intron | 25.0% |
| ! | TTATGTGTAGTTCATTATAC+TGG | - | chr5.2:8161108-8161127 | MS.gene57051:intron | 25.0% |
| !! | ACCTTTAATTTCCTCATAAT+AGG | + | chr5.2:8161561-8161580 | None:intergenic | 25.0% |
| !! | CCTTTAATTTCCTCATAATA+GGG | + | chr5.2:8161560-8161579 | None:intergenic | 25.0% |
| !! | TATGTCATGTTAATTTTACG+TGG | - | chr5.2:8160308-8160327 | MS.gene57051:intron | 25.0% |
| !! | TGTTTGATTTAGGTTATGTT+TGG | - | chr5.2:8161268-8161287 | MS.gene57051:intron | 25.0% |
| !!! | CGGTTTATATTTTTTTGTTG+CGG | - | chr5.2:8160840-8160859 | MS.gene57051:CDS | 25.0% |
| !!! | GAGGTAAATTTTTAAAAGTC+AGG | - | chr5.2:8161397-8161416 | MS.gene57051:CDS | 25.0% |
| AATCAACGAAGAAAGAACAT+AGG | + | chr5.2:8161047-8161066 | None:intergenic | 30.0% | |
| ACTACTTTCAATTTCACTCT+TGG | - | chr5.2:8161177-8161196 | MS.gene57051:intron | 30.0% | |
| CCCTATTATGAGGAAATTAA+AGG | - | chr5.2:8161557-8161576 | MS.gene57051:intron | 30.0% | |
| GTAAAATTTCGATATTCCTG+CGG | - | chr5.2:8160871-8160890 | MS.gene57051:CDS | 30.0% | |
| TAGTTATCAGCAAATGAGAT+AGG | - | chr5.2:8161532-8161551 | MS.gene57051:intron | 30.0% | |
| ! | AATGAAATTAAAAGCATGGC+AGG | - | chr5.2:8161720-8161739 | MS.gene57051:CDS | 30.0% |
| ! | AGAATAGGAGAAAGGATTTT+TGG | + | chr5.2:8160735-8160754 | None:intergenic | 30.0% |
| ! | CATTTGCTGATAACTACAAA+AGG | + | chr5.2:8161528-8161547 | None:intergenic | 30.0% |
| ! | GAATAGGAGAAAGGATTTTT+GGG | + | chr5.2:8160734-8160753 | None:intergenic | 30.0% |
| !! | GGCTATTTTCACTTTGATAT+AGG | - | chr5.2:8160051-8160070 | MS.gene57051:CDS | 30.0% |
| !! | TGAAAAGTGCTTATCATATC+AGG | - | chr5.2:8161322-8161341 | MS.gene57051:intron | 30.0% |
| !!! | TCACATTCCCATTTTTAGTT+GGG | + | chr5.2:8160378-8160397 | None:intergenic | 30.0% |
| !!! | TTCACATTCCCATTTTTAGT+TGG | + | chr5.2:8160379-8160398 | None:intergenic | 30.0% |
| AAAAAGGAAATCGGAAAGCA+AGG | - | chr5.2:8160962-8160981 | MS.gene57051:intron | 35.0% | |
| AAGAAGAAGCTTCTCAAAGA+AGG | - | chr5.2:8160989-8161008 | MS.gene57051:intron | 35.0% | |
| AAGAAGACCCCAACTAAAAA+TGG | - | chr5.2:8160367-8160386 | MS.gene57051:intron | 35.0% | |
| AAGTGTGAGCAACAAAATAG+TGG | + | chr5.2:8160682-8160701 | None:intergenic | 35.0% | |
| AGAAGACCCCAACTAAAAAT+GGG | - | chr5.2:8160368-8160387 | MS.gene57051:intron | 35.0% | |
| AGTTTGATTCTAGCAGAGAT+AGG | - | chr5.2:8161151-8161170 | MS.gene57051:intron | 35.0% | |
| ATAATAGATAGGCAGATGGA+AGG | + | chr5.2:8161367-8161386 | None:intergenic | 35.0% | |
| ATAGGTCAAGAATAGGAGAA+AGG | + | chr5.2:8160743-8160762 | None:intergenic | 35.0% | |
| ATGCTTTAACGCATTTCGAA+TGG | - | chr5.2:8160238-8160257 | MS.gene57051:intron | 35.0% | |
| GATAATCCAATTCTCAAGGT+CGG | - | chr5.2:8160935-8160954 | MS.gene57051:intron | 35.0% | |
| GTCGGTGAAAAAAAGGAAAT+CGG | - | chr5.2:8160953-8160972 | MS.gene57051:intron | 35.0% | |
| GTTTGATTCTAGCAGAGATA+GGG | - | chr5.2:8161152-8161171 | MS.gene57051:intron | 35.0% | |
| TTCAATTTCACTCTTGGACA+AGG | - | chr5.2:8161183-8161202 | MS.gene57051:intron | 35.0% | |
| TTCACTTTGATATAGGCAAG+AGG | - | chr5.2:8160058-8160077 | MS.gene57051:CDS | 35.0% | |
| TTTCTCCTATTCTTGACCTA+TGG | - | chr5.2:8160742-8160761 | MS.gene57051:intron | 35.0% | |
| TTTGATTCTAGCAGAGATAG+GGG | - | chr5.2:8161153-8161172 | MS.gene57051:intron | 35.0% | |
| ! | TGTTGAAGTGTTTACCAGTT+AGG | + | chr5.2:8160797-8160816 | None:intergenic | 35.0% |
| !! | GCTGCTTACTTTTGATATTG+TGG | - | chr5.2:8161646-8161665 | MS.gene57051:CDS | 35.0% |
| !!! | CACATTCCCATTTTTAGTTG+GGG | + | chr5.2:8160377-8160396 | None:intergenic | 35.0% |
| !!! | TTTTGGGTTGGAAACAAAAC+AGG | + | chr5.2:8160718-8160737 | None:intergenic | 35.0% |
| AAGCTTCTCAAAGAAGGTGA+AGG | - | chr5.2:8160995-8161014 | MS.gene57051:intron | 40.0% | |
| CAAGAAGGAGGAAAGTAGTT+TGG | - | chr5.2:8160167-8160186 | MS.gene57051:intron | 40.0% | |
| CACTTTCACTTCTTCCTCAT+CGG | + | chr5.2:8160458-8160477 | None:intergenic | 40.0% | |
| CGTACTATTATCAGGCAAGT+GGG | - | chr5.2:8161760-8161779 | MS.gene57051:CDS | 40.0% | |
| CTTGAGAATTGGATTATCGC+CGG | + | chr5.2:8160933-8160952 | None:intergenic | 40.0% | |
| GAGATAGGATCCCTATTATG+AGG | - | chr5.2:8161547-8161566 | MS.gene57051:intron | 40.0% | |
| GCCTGATAATAGTACGATGT+GGG | + | chr5.2:8161756-8161775 | None:intergenic | 40.0% | |
| GTGGGTACTAGAGAATTCAT+AGG | - | chr5.2:8161778-8161797 | MS.gene57051:CDS | 40.0% | |
| TATACTGGAACGTTGCTTGA+TGG | - | chr5.2:8161123-8161142 | MS.gene57051:intron | 40.0% | |
| TCCCACATCGTACTATTATC+AGG | - | chr5.2:8161752-8161771 | MS.gene57051:CDS | 40.0% | |
| TCGTACTATTATCAGGCAAG+TGG | - | chr5.2:8161759-8161778 | MS.gene57051:CDS | 40.0% | |
| TCTCAAAGAAGGTGAAGGTT+GGG | - | chr5.2:8161000-8161019 | MS.gene57051:intron | 40.0% | |
| TCTCAAGGTCGGTGAAAAAA+AGG | - | chr5.2:8160946-8160965 | MS.gene57051:intron | 40.0% | |
| TGCCTGATAATAGTACGATG+TGG | + | chr5.2:8161757-8161776 | None:intergenic | 40.0% | |
| TTAGTTGGGGTCTTCTTTGA+AGG | + | chr5.2:8160364-8160383 | None:intergenic | 40.0% | |
| TTCAGCCATAGGTCAAGAAT+AGG | + | chr5.2:8160750-8160769 | None:intergenic | 40.0% | |
| TTCTCAAAGAAGGTGAAGGT+TGG | - | chr5.2:8160999-8161018 | MS.gene57051:intron | 40.0% | |
| TTTACCAGTTAGGCAGTGAT+AGG | + | chr5.2:8160787-8160806 | None:intergenic | 40.0% | |
| ! | TTTTCACCGACCTTGAGAAT+TGG | + | chr5.2:8160944-8160963 | None:intergenic | 40.0% |
| !!! | AGGAGAAAGGATTTTTGGGT+TGG | + | chr5.2:8160730-8160749 | None:intergenic | 40.0% |
| AAAGAAGCAAGGGGTAGAAG+AGG | - | chr5.2:8160113-8160132 | MS.gene57051:CDS | 45.0% | |
| AGGTTAGTGCATTGGAACGA+CGG | - | chr5.2:8161203-8161222 | MS.gene57051:intron | 45.0% | |
| AGTGAGTGCAAAGAAGCAAG+GGG | - | chr5.2:8160104-8160123 | MS.gene57051:CDS | 45.0% | |
| CAGTGAGTGCAAAGAAGCAA+GGG | - | chr5.2:8160103-8160122 | MS.gene57051:CDS | 45.0% | |
| CGGCGATAATCCAATTCTCA+AGG | - | chr5.2:8160931-8160950 | MS.gene57051:intron | 45.0% | |
| CTTGGACAAGGTTAGTGCAT+TGG | - | chr5.2:8161195-8161214 | MS.gene57051:intron | 45.0% | |
| CTTTGATATAGGCAAGAGGC+AGG | - | chr5.2:8160062-8160081 | MS.gene57051:CDS | 45.0% | |
| GAAGGAGGAAAGTAGTTTGG+AGG | - | chr5.2:8160170-8160189 | MS.gene57051:intron | 45.0% | |
| GAAGTCGAAGTCGTCTTTCA+TGG | + | chr5.2:8160903-8160922 | None:intergenic | 45.0% | |
| GGAGAGTTTCTTTCAGCCAT+AGG | + | chr5.2:8160761-8160780 | None:intergenic | 45.0% | |
| GTTGAAGGTAGTCAAGAAGG+AGG | - | chr5.2:8160155-8160174 | MS.gene57051:intron | 45.0% | |
| TAGGCAGATGGAAGGTGATA+AGG | + | chr5.2:8161359-8161378 | None:intergenic | 45.0% | |
| TAGTTTGGAGGAATCCTCTG+AGG | - | chr5.2:8160182-8160201 | MS.gene57051:intron | 45.0% | |
| TCTTTCATGGAATCAACCGC+AGG | + | chr5.2:8160890-8160909 | None:intergenic | 45.0% | |
| ! | AGAGTCAGATTCCTCTGAAG+TGG | + | chr5.2:8160419-8160438 | None:intergenic | 45.0% |
| ! | TACCTTCAACGCCTTTTGCT+TGG | + | chr5.2:8160145-8160164 | None:intergenic | 45.0% |
| AAAGACGACTTCGACTTCGC+CGG | - | chr5.2:8160905-8160924 | MS.gene57051:CDS | 50.0% | |
| AATTGGATTATCGCCGGCAC+CGG | + | chr5.2:8160927-8160946 | None:intergenic | 50.0% | |
| CACTTCTTCCTCATCGGAAG+AGG | + | chr5.2:8160452-8160471 | None:intergenic | 50.0% | |
| CAGTTAGGCAGTGATAGGAG+AGG | + | chr5.2:8160782-8160801 | None:intergenic | 50.0% | |
| CTCATCCTCAGATTCCTCAG+AGG | + | chr5.2:8160199-8160218 | None:intergenic | 50.0% | |
| CTCTCCTATCACTGCCTAAC+TGG | - | chr5.2:8160780-8160799 | MS.gene57051:intron | 50.0% | |
| GCAGTGAGTGCAAAGAAGCA+AGG | - | chr5.2:8160102-8160121 | MS.gene57051:CDS | 50.0% | |
| GGTTGGGATGCTCATGATGT+TGG | - | chr5.2:8161016-8161035 | MS.gene57051:intron | 50.0% | |
| ! | CTCTGAGGAATCTGAGGATG+AGG | - | chr5.2:8160197-8160216 | MS.gene57051:intron | 50.0% |
| ! | CTTCAACGCCTTTTGCTTGG+CGG | + | chr5.2:8160142-8160161 | None:intergenic | 50.0% |
| ! | GGAATCCTCTGAGGAATCTG+AGG | - | chr5.2:8160191-8160210 | MS.gene57051:intron | 50.0% |
| ! | GGCGTTGAAGGTAGTCAAGA+AGG | - | chr5.2:8160152-8160171 | MS.gene57051:intron | 50.0% |
| !! | GATTCCTCTGAAGTGGTCTC+TGG | + | chr5.2:8160412-8160431 | None:intergenic | 50.0% |
| AGAGGTTGCCGCCAAGCAAA+AGG | - | chr5.2:8160131-8160150 | MS.gene57051:intron | 55.0% | |
| GCAGGCTGAGGAAGAAGTCA+AGG | - | chr5.2:8160080-8160099 | MS.gene57051:CDS | 55.0% | |
| TATAGGCAAGAGGCAGGCTG+AGG | - | chr5.2:8160068-8160087 | MS.gene57051:CDS | 55.0% | |
| TGACAGCTCCTCTTCCGATG+AGG | - | chr5.2:8160441-8160460 | MS.gene57051:intron | 55.0% | |
| ! | GGAGCAGGAGCTTTTGCAAC+AGG | + | chr5.2:8160343-8160362 | None:intergenic | 55.0% |
| ! | GGGGTCTTCTTTGAAGGAGC+AGG | + | chr5.2:8160358-8160377 | None:intergenic | 55.0% |
| !! | CGCCAAGCAAAAGGCGTTGA+AGG | - | chr5.2:8160140-8160159 | MS.gene57051:intron | 55.0% |
| !! | CTCTGAAGTGGTCTCTGGCT+GGG | + | chr5.2:8160407-8160426 | None:intergenic | 55.0% |
| CCAGCCAGAGACCACTTCAG+AGG | - | chr5.2:8160405-8160424 | MS.gene57051:intron | 60.0% | |
| !! | CCTCTGAAGTGGTCTCTGGC+TGG | + | chr5.2:8160408-8160427 | None:intergenic | 60.0% |
| GACTTCGACTTCGCCGGTGC+CGG | - | chr5.2:8160911-8160930 | MS.gene57051:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 8160033 | 8161816 | 8160033 | ID=MS.gene57051 |
| chr5.2 | mRNA | 8160033 | 8161816 | 8160033 | ID=MS.gene57051.t1;Parent=MS.gene57051 |
| chr5.2 | exon | 8161631 | 8161816 | 8161631 | ID=MS.gene57051.t1.exon1;Parent=MS.gene57051.t1 |
| chr5.2 | CDS | 8161631 | 8161816 | 8161631 | ID=cds.MS.gene57051.t1;Parent=MS.gene57051.t1 |
| chr5.2 | exon | 8161371 | 8161512 | 8161371 | ID=MS.gene57051.t1.exon2;Parent=MS.gene57051.t1 |
| chr5.2 | CDS | 8161371 | 8161512 | 8161371 | ID=cds.MS.gene57051.t1;Parent=MS.gene57051.t1 |
| chr5.2 | exon | 8160833 | 8160940 | 8160833 | ID=MS.gene57051.t1.exon3;Parent=MS.gene57051.t1 |
| chr5.2 | CDS | 8160833 | 8160940 | 8160833 | ID=cds.MS.gene57051.t1;Parent=MS.gene57051.t1 |
| chr5.2 | exon | 8160645 | 8160731 | 8160645 | ID=MS.gene57051.t1.exon4;Parent=MS.gene57051.t1 |
| chr5.2 | CDS | 8160645 | 8160731 | 8160645 | ID=cds.MS.gene57051.t1;Parent=MS.gene57051.t1 |
| chr5.2 | exon | 8160450 | 8160505 | 8160450 | ID=MS.gene57051.t1.exon5;Parent=MS.gene57051.t1 |
| chr5.2 | CDS | 8160450 | 8160505 | 8160450 | ID=cds.MS.gene57051.t1;Parent=MS.gene57051.t1 |
| chr5.2 | exon | 8160033 | 8160146 | 8160033 | ID=MS.gene57051.t1.exon6;Parent=MS.gene57051.t1 |
| chr5.2 | CDS | 8160033 | 8160146 | 8160033 | ID=cds.MS.gene57051.t1;Parent=MS.gene57051.t1 |
| Gene Sequence |
| Protein sequence |
