AlfalfaGEDB | MS.gene060310

M. sativa cultivar XinJiangDaYe / MS.gene060310

KEGG: K00899
GO: GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009987 GO:0016053 GO:0016301 GO:0016740 GO:0016772 GO:0016773 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0046522 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
PFAM: PF01636.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060310.t1	XP_013470031.1	98.6	418	6	0	1	418	1	418	2.60E-240	840.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060310.t1	Q9C6D2	77.2	417	93	1	3	417	2	418	8.6e-192	671.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060310.t1	A0A072VPX2	98.6	418	6	0	1	418	1	418	1.9e-240	840.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene060310	0.871953	4.61E-67	-1.69E-46
MS.gene049254	MS.gene060310	0.80937	1.96E-50	-1.69E-46
MS.gene049404	MS.gene060310	0.818925	1.52E-52	-1.69E-46
MS.gene049424	MS.gene060310	0.80055	1.37E-48	-1.69E-46
MS.gene049435	MS.gene060310	0.806664	7.37E-50	-1.69E-46
MS.gene049452	MS.gene060310	0.813378	2.64E-51	-1.69E-46
MS.gene049983	MS.gene060310	0.810103	1.36E-50	-1.69E-46
MS.gene050605	MS.gene060310	0.805198	1.50E-49	-1.69E-46
MS.gene050680	MS.gene060310	0.813155	2.95E-51	-1.69E-46
MS.gene050780	MS.gene060310	0.809233	2.09E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060310.t1	MTR_1g107235	98.565	418	6	0	1	418	1	418	0.0	863
MS.gene060310.t1	MTR_1g107235	95.130	308	9	2	1	302	1	308	0.0	605

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060310.t1	AT1G49820	77.218	417	93	1	3	417	2	418	0.0	689

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Find 78 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGATGAAGACGAAATTA+AGG	0.335482	1.2:+79844164	None:intergenic
AAAGAGACACCTTATCATTT+TGG	0.222077	1.2:+79841158	None:intergenic
AAAGTGCAGTGAATTTATGG+TGG	0.659695	1.2:+79841310	None:intergenic
AACGGGCAACCTGTGAACGG+CGG	0.625939	1.2:-79839731	MS.gene060310:CDS
AAGCCAAAATCAAATTTCCT+AGG	0.485089	1.2:+79842420	None:intergenic
AAGTTTCTGAGTATAATCGC+TGG	0.568636	1.2:-79842757	MS.gene060310:CDS
ACACAGGAGAATTGTTGGTG+TGG	0.730427	1.2:-79839793	MS.gene060310:intron
ACCACGGAGCATAAACGGGA+CGG	0.676173	1.2:-79843732	MS.gene060310:intron
ACCATAAATTCACTGCACTT+TGG	0.416058	1.2:-79841308	MS.gene060310:CDS
ACCGTCCCGTTTATGCTCCG+TGG	0.654333	1.2:+79843731	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACGATGAAGACGAAATTA+AGG	+	chr1.2:79839781-79839800	None:intergenic	30.0%
AAGACATGTTATGTTACCAT+TGG	-	chr1.2:79841067-79841086	MS.gene060310:intron	30.0%
AAGCCAAAATCAAATTTCCT+AGG	+	chr1.2:79841525-79841544	None:intergenic	30.0%
ACATGATAGAGTAATTCTCA+TGG	-	chr1.2:79842367-79842386	MS.gene060310:intron	30.0%
ACTGTACATACCAAACAAAA+AGG	-	chr1.2:79843256-79843275	MS.gene060310:intron	30.0%
AGATATAGAATCGCAAAGTT+TGG	+	chr1.2:79842537-79842556	None:intergenic	30.0%
AGTTTATTTGGGCATTAGAA+GGG	-	chr1.2:79842981-79843000	MS.gene060310:intron	30.0%
AGTTTCTATTGTCGAAAAGA+TGG	-	chr1.2:79842944-79842963	MS.gene060310:intron	30.0%
ATAAGCCACAAACAAAGAAT+AGG	-	chr1.2:79842027-79842046	MS.gene060310:intron	30.0%
ATTGTCTATAAGGCATAAGA+AGG	+	chr1.2:79840765-79840784	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	79839644	79844320	79839644	ID=MS.gene060310
chr1.2	mRNA	79839644	79844320	79839644	ID=MS.gene060310.t1;Parent=MS.gene060310
chr1.2	exon	79844132	79844320	79844132	ID=MS.gene060310.t1.exon1;Parent=MS.gene060310.t1
chr1.2	CDS	79844132	79844320	79844132	ID=cds.MS.gene060310.t1;Parent=MS.gene060310.t1
chr1.2	exon	79843733	79844042	79843733	ID=MS.gene060310.t1.exon2;Parent=MS.gene060310.t1
chr1.2	CDS	79843733	79844042	79843733	ID=cds.MS.gene060310.t1;Parent=MS.gene060310.t1
chr1.2	exon	79842674	79842848	79842674	ID=MS.gene060310.t1.exon3;Parent=MS.gene060310.t1
chr1.2	CDS	79842674	79842848	79842674	ID=cds.MS.gene060310.t1;Parent=MS.gene060310.t1
chr1.2	exon	79842376	79842577	79842376	ID=MS.gene060310.t1.exon4;Parent=MS.gene060310.t1
chr1.2	CDS	79842376	79842577	79842376	ID=cds.MS.gene060310.t1;Parent=MS.gene060310.t1
chr1.2	exon	79841168	79841382	79841168	ID=MS.gene060310.t1.exon5;Parent=MS.gene060310.t1
chr1.2	CDS	79841168	79841382	79841168	ID=cds.MS.gene060310.t1;Parent=MS.gene060310.t1
chr1.2	exon	79839644	79839809	79839644	ID=MS.gene060310.t1.exon6;Parent=MS.gene060310.t1
chr1.2	CDS	79839644	79839809	79839644	ID=cds.MS.gene060310.t1;Parent=MS.gene060310.t1

Gene Sequence

>MS.gene060310

ATGTCGAATTTCTCAGAGTTCAAACCTCTGAACGAGAAAACACTGATCGAGTACATAAAATCCATCCCTGCACTTTCATCCAAAATCGCCAACAATTTCTCCGACTTATCCGTCAAAGAAGTCGGAGATGGCAACCTTAATTTCGTCTTCATCGTTTCCAACACCAACGGTTCTTTTGTCATCAAACAGGTATCATCATCATACACAATCTTCCAAAAATGCACAAAATTTTGTTCTTTTTTCAATTTTTAATAATGGGTTTCATTGCATTGTTGTAGGCTTTACCATATGTTCGTTGCATAGGAGAATCATGGCCAATGACGAAAGAAAGAGCGTATTTTGAGTCATTGGCGTTGAAAGAAGAGGGTAAATTGAGTCCTGATCATGTTCCTGAAATCTATCATTTTGATCGTACTATGTCTTTGATTGGTATGCGTTATTTGGAGCCACCACATATAATTCTCAGAAAAGGCTTGATTGTTGGTGTTGAGTATCCTTTGTTGGCTGATCACATGTCTGATTTTATGGCTAATACACTCTTCTTTACTTCTCTGCTTTACCGTTCTACCACGGAGCATAAACGGGACGGTATGAATCTTCCCTTTTCACCTTTTCATACCCTTAACATATTTATTTGTTTGCAATTAAAAGTCTGTTACTCTTAGTCTATTTGTCTAATTCCCTTAAATTTGACTCTGTAATGGAAACATTGGTTCCTTGACGTGTGGTTGTCAATCGTCTGTGATTTGCTTTGTTCTTGTTTGGCCCTGTTTGGATAAACAACTTATTTCGCAGCTTATGTATAAGCTCCCTCTTTCTATAACAAAAGATAAAATCAAGTTAAGCTTTGTTACTAAGATATCTTCGAGAGTTAATGAGAATAAGCTGAAAAGAGCTTATGAACATGCAATAAGCTATTTTCAATAGTTCTCTCAAACAAAAATAAACTGAAAACAACTTATGAACATCTAATAAGCTATTTTCATAAGTTCTTCCAAACAGTCTCGCAAGTACTTACAATTATGCCAGTAGGTAAGCTCAAAAAAACAACCCCTTAGTAAATATTTGAGTCTTTGTTAGTCTTTTTCATTTGAAAATGGATGGAGTAAATGATGTCACCTTCTTATGCCTTATAGACAATTAATATTCTTAAACACATAGTAATATATAACCCACATGGGCTAGCCTGGTGGTGTAGGCTTTAGACCTTGGAGTGTGATCCTCTCAAGTTCTCATATTTGGATCCTCATGGTGCAAATTTTTGTGGGCTAGTCCATACTGAGCTTGCTCTGGCTTTAAATGGGCCTCTACTAATGAACGGTGCAATTGATCCCCGGATTAGTAGGTCGTTGGCCCGGATGCCGAGTTTTTTTATAAAAAAAAAAAAAAAAAAACATAATTATATTTATATTGATATTACCTTAAGACATGTTATGTTACCATTGGTCTTAAGTTATCCTTGTTTCATGCAGTTGCTGAATTTTGCGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTGTTTTCTCTGACCCATATAAAGTTTCTGAGTATAATCGCTGGACTTCCCCTCATCTTGACCGTGATGCTGAAGCTGTTCGGGAAGACAATCTACTGAAGCTTGAAGTTGCTGAGCTAAAATCAAAGTATTATATATGTCGCACACTCTATCTTTTTTTCTTCTTTTAATGCAGTAGTTTTGTTTTTTGAGTTTTTGTTGATGAAAATTTATGTTCATTTAGGTTCTGTGAGAGGGCTCAGGCACTAATACACGGAGATCTACACACTGGTTCTGTTATGGTTACTCGTGAATCAACTCAAGTTATTGATCCTGAATTTGCATTTTATGGACCAATGGGTTTTGATATCGGAGCATTCCTAGGAAATTTGATTTTGGCTTTCTTTTCTCAGGATGGACATGCTGATCAAGCAAACGATAGAAAAGTAGGTCCTCTTTTTCCATGTCTTTATTGGCCCATTCTTTTCATTCTATTCTGAATTTGTTACCAGACATATATTTTCTGGTGGTTCTTTGTGGTCTAACTTGCAAACTTAGATCTCTATCTCTAGTTTTGGTTAATATATTGAAGTTTTTATTTTACTTTGGTGGATTTGTACATGGAAGAAGCTGGTTATATTTAAGCAGTCCTACATATCTTTAGGATATCATGACATTAGTACTTGCAATTAAGTTTTTATTTTTTTTTTTTATTTTTTTTTTATCTTTGTTCTTATTTACAGTTTTGAATCAATTTGTATTGTTCTCATGCTTTGTCTGCATGGTGACCATAACTAGTTCCTTGTTATCCTAATTCAGAGAAGGAACCCTTGGTATGCATGTTGATCTGGTATCAGAGTCACACCATGTGAAAAATCTAATGCATAAGCCACAAACAAAGAATAGGAAATTTCAGAAAGGTAAATTACAGAAAATAAAGAGTAGAGCTCCCAGCTATGGAAGAAGCTTTCTTGCCCAAGGCATATGCCATAAATAAAGACGATATCATACTTCACATGAACAACCCTTGACCCCTTATACTACGATTCTCTCTCCCATTACTCTGTACTCAAAACACATTTTCCCTTTCCTAACTACTTTTTTCCGCTCTACTGGCTGTGTTAGGCCTGTGCGAATGGACTTGTGGAATTTGGGGTTGTATTTGTATACACATCTTTTTCAGATAATATTAGATTTCTTAGCCTAACACTAGTATCAATGGTTACATGATAGAGTAATTCTCATGGTTTCTCTTTGATGTCCAGCATATGATATTTTTTAGAGAATCAACATTCTGGATATGTAAAGTGATTAGACTGCTCTCGTACATTGACTAGTTTTTAGGAGTACTCTGTGTTTCAGTTTTTTCTTTGTTGAGGTTTTGTTATCCTCCAAACTTTGCGATTCTATATCTTTCTTTAACACATTGTGTTATGCAGGCATATAAGGAATGGATTCTTAAGACAATTGCAGACACTTGGAATCTTTTCCACCATAAATTCACTGCACTTTGGGATGAGCATAAAAATGGTGCTGGTGAGGCATATCTTCCAGGAATCTATAACAATCCTGATGTTCAACTACTTGTACAGAAGAAATACATGACAGATTTATTTCATGACAGTCTCGGATTTGGCGCTGCCAAAATGATAAGGTGTCTCTTTTTCTTAAATATATTTTTCCTCTTTTAATAAAAACAATAATATGAGGTTGCAGTAATCATTTTCACTTAAATGCTACAGAATGTCCATGTTTATGATTTATGGGTTAACAATACAATCATTAGAGAGATAAATGGAGTAGTTTCTATTGTCGAAAAGATGGTAAAGTCACATCTTAGTTTATTTGGGCATTAGAAGGGGAAAACTAAAAATTACTTCCTCTGGTCCTATTTATAAGAAAAAGTTAACTTTTTAGATTCATTGTATAATTAATGTATCTTGTCTAGAATATAAACCAAATATATCATTTATACAATGAATTAAAAAAGTCAAATACAGTTAAAACTCTATAAATTAATAATGTCAGGACCGGAGAAATTTATTAATTTAGAGAGTTATTAATTTATCGATAAATTAATAATTATTAATTTAAAGAGTTTTTAAGTAATTATACTGTACATACCAAACAAAAAGGCAAATTAGTCTATGCCTCTTAGAATTACGTTGCAGCGAACCTTGGGACTCAACGTAAATTAGTAACTACTGTGTTCATATGCATTGGAAATCAATAATGACTTTTGAAGTACAATAAATGTAAACAAGAGGAACAAATGTGTTCAATGTATTCTTAATATATTTTTTTTCAGTTTCTATGAATTATTAATTTATGATTTTCTTGGGACCGAAAATTATAAAGGGATCTCCCGAAAAAATATTATCTTATTATTTTATCGAGTTTTTCAATTTTTTACATTGGCCCAAGTCGGGACCGGACAAATTTATTATTTTAGAGAGTTTATTAATTTACCGAGTATTAAATTAAAGAGTTTCTACAGTATTTCTTATAAATAGGACCGGAGGGAGTAAATTATAGTGAGAGATTTAGGCTGGCATTGATAGTGTGTTATAGTGATATTTGATCCATGTAATCGACCCTACCTTGTGGAAAAATGTATGGTTGTTGTTTTAATATATATTCACGGTCTTGCAAACTAAGAGCTTAAACTTTTAAGATAATTGGTCATTTACACAGTACAGCTTTATTGACCAAGTAATCAAGTCCAAAGGGCTCTTGTTTGAGCAGGAATGTTAGATATAAAAAAAAAAAACAAAAAAAAAAACAGCGGATACCATTACGCTTATCTAAAATAAAATAAAAAACAGTGGATACCATTACGCATCTTTTGTTCTGGTGTTATATTCACTAAGCCTCCAGGAAAAATAAATAGGTTCCAAAACACCTGTTCGTGTCAAGTCCACCCAGAGTATCACCGTGCCCTGACCTAATCTTTGTCCATAAAAGATTGAGGTGTCACGACTAACTTTTCCATTTCAATTATCTGATACACAGGAGAATTGTTGGTGTGGCACATGTTGAGGATCTTGAATCTATAGCTGACGCTGGTAAACGGGCAACCTGTGAACGGCGGGCACTTGATTTAGCTAAGATGCTTCTCAAAGAAAGAAGAAAATTTGAGAGCATTTCTGAAATTGTCTCAGCAATTCAGCAATTTTAG

Protein sequence

>MS.gene060310.t1

MSNFSEFKPLNEKTLIEYIKSIPALSSKIANNFSDLSVKEVGDGNLNFVFIVSNTNGSFVIKQALPYVRCIGESWPMTKERAYFESLALKEEGKLSPDHVPEIYHFDRTMSLIGMRYLEPPHIILRKGLIVGVEYPLLADHMSDFMANTLFFTSLLYRSTTEHKRDVAEFCGNVELCRLTEQVVFSDPYKVSEYNRWTSPHLDRDAEAVREDNLLKLEVAELKSKFCERAQALIHGDLHTGSVMVTRESTQVIDPEFAFYGPMGFDIGAFLGNLILAFFSQDGHADQANDRKAYKEWILKTIADTWNLFHHKFTALWDEHKNGAGEAYLPGIYNNPDVQLLVQKKYMTDLFHDSLGFGAAKMIRRIVGVAHVEDLESIADAGKRATCERRALDLAKMLLKERRKFESISEIVSAIQQF