Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57193.t1 | XP_003611634.1 | 97.7 | 305 | 7 | 0 | 1 | 305 | 1 | 305 | 1.10E-168 | 602.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57193.t1 | Q9SZU7 | 77.6 | 268 | 60 | 0 | 1 | 268 | 1 | 268 | 4.0e-122 | 439.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57193.t1 | G7K3X2 | 97.7 | 305 | 7 | 0 | 1 | 305 | 1 | 305 | 8.2e-169 | 602.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052414 | MS.gene57193 | 0.812513 | 4.08E-51 | -1.69E-46 |
| MS.gene053873 | MS.gene57193 | 0.805253 | 1.46E-49 | -1.69E-46 |
| MS.gene054102 | MS.gene57193 | 0.83176 | 1.39E-55 | -1.69E-46 |
| MS.gene054349 | MS.gene57193 | 0.824237 | 9.00E-54 | -1.69E-46 |
| MS.gene055744 | MS.gene57193 | 0.800594 | 1.34E-48 | -1.69E-46 |
| MS.gene056514 | MS.gene57193 | 0.825565 | 4.37E-54 | -1.69E-46 |
| MS.gene057749 | MS.gene57193 | 0.836045 | 1.18E-56 | -1.69E-46 |
| MS.gene057823 | MS.gene57193 | 0.836215 | 1.07E-56 | -1.69E-46 |
| MS.gene057824 | MS.gene57193 | 0.805002 | 1.65E-49 | -1.69E-46 |
| MS.gene057825 | MS.gene57193 | 0.849001 | 4.28E-60 | -1.69E-46 |
| MS.gene059011 | MS.gene57193 | 0.805187 | 1.51E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene57193 | 0.817952 | 2.53E-52 | -1.69E-46 |
| MS.gene059876 | MS.gene57193 | 0.801741 | 7.81E-49 | -1.69E-46 |
| MS.gene060372 | MS.gene57193 | 0.802014 | 6.86E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57193.t1 | MTR_5g016150 | 97.705 | 305 | 7 | 0 | 1 | 305 | 1 | 305 | 0.0 | 627 |
| MS.gene57193.t1 | MTR_4g095310 | 79.478 | 268 | 55 | 0 | 1 | 268 | 1 | 268 | 5.36e-169 | 469 |
| MS.gene57193.t1 | MTR_1g018320 | 57.430 | 249 | 104 | 2 | 6 | 253 | 8 | 255 | 6.56e-108 | 315 |
| MS.gene57193.t1 | MTR_3g045440 | 38.776 | 245 | 148 | 2 | 9 | 252 | 13 | 256 | 7.69e-67 | 210 |
| MS.gene57193.t1 | MTR_6g086560 | 39.764 | 254 | 150 | 3 | 9 | 260 | 22 | 274 | 7.79e-65 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57193.t1 | AT4G37470 | 77.612 | 268 | 60 | 0 | 1 | 268 | 1 | 268 | 6.12e-161 | 449 |
| MS.gene57193.t1 | AT3G03990 | 58.871 | 248 | 101 | 1 | 6 | 253 | 8 | 254 | 3.20e-108 | 315 |
| MS.gene57193.t1 | AT3G24420 | 40.840 | 262 | 152 | 3 | 7 | 266 | 13 | 273 | 6.33e-75 | 231 |
Find 64 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAACTTGTCATGGTTTC+CGG | 0.180279 | 5.3:+8960991 | MS.gene57193:CDS |
| ACTGGCTGTGGGTGGGGATA+TGG | 0.181116 | 5.3:+8961745 | MS.gene57193:CDS |
| TTATGATTTACTTGCTATTT+TGG | 0.190068 | 5.3:+8960876 | MS.gene57193:CDS |
| TTGATGAAGCCTCTGGATTT+TGG | 0.228850 | 5.3:-8963627 | None:intergenic |
| CTCTCAGAATCAAAATATTC+AGG | 0.252034 | 5.3:-8960829 | None:intergenic |
| AATTACAAAGCTTGGTGTTA+TGG | 0.253089 | 5.3:+8961713 | MS.gene57193:CDS |
| CGGAAACCATGACAAGTTTA+AGG | 0.259764 | 5.3:-8960990 | None:intergenic |
| GGCGGTTCCGGTGGTGGTTT+CGG | 0.295547 | 5.3:+8961922 | MS.gene57193:CDS |
| GGCTTCATCCTTGATGAAAA+TGG | 0.296110 | 5.3:+8963669 | MS.gene57193:CDS |
| ATAGTTCTAGCTCATGGATT+TGG | 0.302677 | 5.3:+8960712 | MS.gene57193:CDS |
| CTCACCAGATATTGTTATTC+CGG | 0.306476 | 5.3:+8962021 | MS.gene57193:CDS |
| GAGAGACATTCAAGCTTAGA+AGG | 0.335053 | 5.3:+8960847 | MS.gene57193:CDS |
| TACTAATTACCTTGGTGAAC+CGG | 0.348114 | 5.3:-8961010 | None:intergenic |
| CATTCTGTTTCTGCAATGAT+TGG | 0.356191 | 5.3:+8960934 | MS.gene57193:CDS |
| CGCTCCACTGGCTGTGGGTG+GGG | 0.356929 | 5.3:+8961739 | MS.gene57193:CDS |
| TGAGAAAGATATGGCGGTTC+CGG | 0.374023 | 5.3:+8961910 | MS.gene57193:CDS |
| ATTGAATCTTGCGTATTTGT+TGG | 0.380353 | 5.3:+8960910 | MS.gene57193:CDS |
| GGAAAGTGTGGTAGTTTCTC+TGG | 0.388541 | 5.3:-8963606 | None:intergenic |
| AACACCGGAATAACAATATC+TGG | 0.403561 | 5.3:-8962025 | None:intergenic |
| TTGAACGATGTGAATTACTT+TGG | 0.403798 | 5.3:+8961641 | MS.gene57193:CDS |
| TCGCTCCACTGGCTGTGGGT+GGG | 0.411517 | 5.3:+8961738 | MS.gene57193:CDS |
| TGGATTCGCTCCACTGGCTG+TGG | 0.437225 | 5.3:+8961733 | MS.gene57193:CDS |
| CAAAGTGTTTCCACACAGAT+TGG | 0.448178 | 5.3:-8960741 | None:intergenic |
| ATCAAAATATTCAGGGTTAG+TGG | 0.452952 | 5.3:-8960821 | None:intergenic |
| TTCGCTCCACTGGCTGTGGG+TGG | 0.454426 | 5.3:+8961737 | MS.gene57193:CDS |
| AGATATGGCGGTTCCGGTGG+TGG | 0.469390 | 5.3:+8961916 | MS.gene57193:CDS |
| TATGGATTCAGTGGCAGTAC+AGG | 0.471293 | 5.3:+8961763 | MS.gene57193:CDS |
| GTGTTATGGATTCGCTCCAC+TGG | 0.474287 | 5.3:+8961727 | MS.gene57193:CDS |
| CGAAAATCATCAACAAGATA+AGG | 0.479354 | 5.3:-8960766 | None:intergenic |
| TATACAAGCTGAGAAAGATA+TGG | 0.495978 | 5.3:+8961901 | MS.gene57193:CDS |
| GAATCAATTATTCAACGCTA+TGG | 0.502493 | 5.3:+8961685 | MS.gene57193:CDS |
| TGGCTGAAAATTACAAAGCT+TGG | 0.506303 | 5.3:+8961705 | MS.gene57193:CDS |
| AGGTACATAGTTCTAGCTCA+TGG | 0.516768 | 5.3:+8960706 | MS.gene57193:CDS |
| AACGATGTGAATTACTTTGG+AGG | 0.518896 | 5.3:+8961644 | MS.gene57193:CDS |
| ACAAGTTTAAGGAAAAGATC+AGG | 0.522449 | 5.3:-8960979 | None:intergenic |
| TCTCAGAATCAAAATATTCA+GGG | 0.525099 | 5.3:-8960828 | None:intergenic |
| GGAGTATCTTCACCAACACT+TGG | 0.527353 | 5.3:+8961943 | MS.gene57193:CDS |
| GACACTACTAGAGCTATGTC+TGG | 0.553054 | 5.3:-8961815 | None:intergenic |
| TGTTGTTCTATATGATAACA+TGG | 0.566458 | 5.3:+8960789 | MS.gene57193:CDS |
| GGATTCGCTCCACTGGCTGT+GGG | 0.566939 | 5.3:+8961734 | MS.gene57193:CDS |
| CTATATGATAACATGGGTGC+TGG | 0.576349 | 5.3:+8960796 | MS.gene57193:CDS |
| GTCGAACATTGTTCAACATG+AGG | 0.582241 | 5.3:+8961792 | MS.gene57193:CDS |
| GAGTATCTTCACCAACACTT+GGG | 0.588556 | 5.3:+8961944 | MS.gene57193:CDS |
| GAAAGATATGGCGGTTCCGG+TGG | 0.592732 | 5.3:+8961913 | MS.gene57193:CDS |
| GGGTGGGGATATGGATTCAG+TGG | 0.607780 | 5.3:+8961754 | MS.gene57193:CDS |
| ATATCCCCACCCACAGCCAG+TGG | 0.619111 | 5.3:-8961743 | None:intergenic |
| ATAACAAGTATTTACCTCGT+GGG | 0.628025 | 5.3:-8962076 | None:intergenic |
| TATCTTCACCAACACTTGGG+TGG | 0.629076 | 5.3:+8961947 | MS.gene57193:CDS |
| GTTGAGGTCATGACGACAGA+TGG | 0.630775 | 5.3:+8961980 | MS.gene57193:CDS |
| TATGACAAGGCACAGTAACA+AGG | 0.637592 | 5.3:-8961877 | None:intergenic |
| GGGTGGTCAGTCCATCGTTG+AGG | 0.645417 | 5.3:+8961964 | MS.gene57193:CDS |
| TGTCGTCATGACCTCAACGA+TGG | 0.647221 | 5.3:-8961975 | None:intergenic |
| ACATAGCTCTAGTAGTGTCA+CGG | 0.655108 | 5.3:+8961819 | MS.gene57193:CDS |
| AGATACTCCGAAACCACCAC+CGG | 0.658384 | 5.3:-8961929 | None:intergenic |
| TCATGGTTTCCGGTTCACCA+AGG | 0.661388 | 5.3:+8961001 | MS.gene57193:CDS |
| CCACACTTTCCAAAATCCAG+AGG | 0.663526 | 5.3:+8963618 | MS.gene57193:CDS |
| TGGACTGACCACCCAAGTGT+TGG | 0.685657 | 5.3:-8961955 | None:intergenic |
| AACTTAATATTGAGCCCACG+AGG | 0.689184 | 5.3:+8962062 | MS.gene57193:CDS |
| ACAAGCTGAGAAAGATATGG+CGG | 0.694733 | 5.3:+8961904 | MS.gene57193:CDS |
| TCAGCTTGTATAATATGACA+AGG | 0.695896 | 5.3:-8961890 | None:intergenic |
| TGAATGTGTCTAAGCAACAC+CGG | 0.702558 | 5.3:-8962040 | None:intergenic |
| TTGGAACAGACCAATCTGTG+TGG | 0.709650 | 5.3:+8960731 | MS.gene57193:CDS |
| GTTGTTCTATATGATAACAT+GGG | 0.717956 | 5.3:+8960790 | MS.gene57193:CDS |
| ATATCTGGTGAGCTTAACTG+CGG | 0.718673 | 5.3:-8962010 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTAAAAAAAAACGT+TGG | + | chr5.3:8962985-8963004 | MS.gene57193:intron | 10.0% |
| !! | AAAATTGTAACATTGTTTAA+TGG | + | chr5.3:8961059-8961078 | MS.gene57193:intron | 15.0% |
| !! | AATATGAAATTTGATATAGT+TGG | + | chr5.3:8961448-8961467 | MS.gene57193:intron | 15.0% |
| !! | AATTGAATATAGAATAAAAC+AGG | - | chr5.3:8962471-8962490 | None:intergenic | 15.0% |
| !! | ATATCAAATTTCATATTACT+AGG | - | chr5.3:8961445-8961464 | None:intergenic | 15.0% |
| !! | ATTTAAATTTAATTGTGGTA+TGG | + | chr5.3:8962517-8962536 | MS.gene57193:intron | 15.0% |
| !! | CTACAAAAAAAAAAACTATT+AGG | + | chr5.3:8963019-8963038 | MS.gene57193:intron | 15.0% |
| !! | TATCAAATTTCATATTACTA+GGG | - | chr5.3:8961444-8961463 | None:intergenic | 15.0% |
| !! | TTAATATGATTGAAAATACA+TGG | - | chr5.3:8962747-8962766 | None:intergenic | 15.0% |
| !! | TTGTGATTTAAATTTAATTG+TGG | + | chr5.3:8962512-8962531 | MS.gene57193:intron | 15.0% |
| !!! | AATATTGACTTGTAAAAAAT+TGG | + | chr5.3:8962927-8962946 | MS.gene57193:intron | 15.0% |
| !!! | ATTTTCAATCATATTAAATG+AGG | + | chr5.3:8962750-8962769 | MS.gene57193:intron | 15.0% |
| !!! | CTAATAGTTTTTTTTTTTGT+AGG | - | chr5.3:8963021-8963040 | None:intergenic | 15.0% |
| !!! | GGTTTAAGATTTTAAAAAAA+AGG | - | chr5.3:8962194-8962213 | None:intergenic | 15.0% |
| !!! | TACTTTTTTTTTTCTAACAA+TGG | + | chr5.3:8963577-8963596 | MS.gene57193:intron | 15.0% |
| !!! | TATTTTCTGTTAGTTAAATA+AGG | - | chr5.3:8963046-8963065 | None:intergenic | 15.0% |
| !!! | TGTTTTATTCTATATTCAAT+TGG | + | chr5.3:8962470-8962489 | MS.gene57193:intron | 15.0% |
| !!! | TTTTATTTTCAAATTCTCAT+AGG | - | chr5.3:8963432-8963451 | None:intergenic | 15.0% |
| !! | AAAAACATAAAACATCTCAA+TGG | - | chr5.3:8961395-8961414 | None:intergenic | 20.0% |
| !! | AAAATGTTTATCCAACAAAT+TGG | + | chr5.3:8963209-8963228 | MS.gene57193:intron | 20.0% |
| !! | AAATAATCAAGAGAAATGTA+AGG | - | chr5.3:8961268-8961287 | None:intergenic | 20.0% |
| !! | AAATAGTCATATCTAAACAA+AGG | + | chr5.3:8963295-8963314 | MS.gene57193:intron | 20.0% |
| !! | AAATGTTTATCCAACAAATT+GGG | + | chr5.3:8963210-8963229 | MS.gene57193:intron | 20.0% |
| !! | AATAATCAAGAGAAATGTAA+GGG | - | chr5.3:8961267-8961286 | None:intergenic | 20.0% |
| !! | ATAAAACTTACTAATTACCT+TGG | - | chr5.3:8961021-8961040 | None:intergenic | 20.0% |
| !! | ATACATATATCATTCATATG+TGG | + | chr5.3:8963103-8963122 | MS.gene57193:intron | 20.0% |
| !! | ATTTAAATCACAAACAAACA+AGG | - | chr5.3:8962505-8962524 | None:intergenic | 20.0% |
| !! | TAAATGTTTATCCACAAATT+AGG | + | chr5.3:8963346-8963365 | MS.gene57193:intron | 20.0% |
| !! | TACAATTCCATAATCAAATT+AGG | + | chr5.3:8963064-8963083 | MS.gene57193:intron | 20.0% |
| !! | TATACTATTTACTCAACAAA+AGG | + | chr5.3:8962858-8962877 | MS.gene57193:intron | 20.0% |
| !! | TGAAATCTAAATCACAATTA+TGG | - | chr5.3:8962112-8962131 | None:intergenic | 20.0% |
| !! | TGAAATTCCTAATTTGATTA+TGG | - | chr5.3:8963074-8963093 | None:intergenic | 20.0% |
| !! | TGAACAATAAACACAAAATT+TGG | + | chr5.3:8961091-8961110 | MS.gene57193:intron | 20.0% |
| !! | TTATTATTGTTAAGCAACTT+AGG | - | chr5.3:8961517-8961536 | None:intergenic | 20.0% |
| !!! | AATTTATTTTCTCAACCAAT+TGG | + | chr5.3:8962603-8962622 | MS.gene57193:intron | 20.0% |
| !!! | AGATTTTAAAAAAGGGAAAA+TGG | + | chr5.3:8961159-8961178 | MS.gene57193:intron | 20.0% |
| !!! | GTTTTAAGTTAAAACTCTTA+AGG | + | chr5.3:8962772-8962791 | MS.gene57193:intron | 20.0% |
| !!! | TAAGCAAATTTTATTAAGCT+AGG | - | chr5.3:8962417-8962436 | None:intergenic | 20.0% |
| !!! | TACATTTCTCTTGATTATTT+TGG | + | chr5.3:8961268-8961287 | MS.gene57193:intron | 20.0% |
| !!! | TTATGATTTACTTGCTATTT+TGG | + | chr5.3:8960876-8960895 | MS.gene57193:CDS | 20.0% |
| !!! | TTTTAGACATAGTTTGAATT+TGG | + | chr5.3:8961326-8961345 | MS.gene57193:intron | 20.0% |
| ! | AACAAAAACAACAAATACAG+AGG | + | chr5.3:8963648-8963667 | MS.gene57193:CDS | 25.0% |
| ! | AAGACTGATATAACTAATTG+AGG | - | chr5.3:8963476-8963495 | None:intergenic | 25.0% |
| ! | AATGATATCTAATTGAACCT+AGG | - | chr5.3:8961227-8961246 | None:intergenic | 25.0% |
| ! | AGTCTTTACTATTATGTATG+AGG | + | chr5.3:8963174-8963193 | MS.gene57193:intron | 25.0% |
| ! | ATTTCACTCAATCATAGTTA+GGG | + | chr5.3:8962126-8962145 | MS.gene57193:intron | 25.0% |
| ! | GAACCTAGGTATAAAAAAAA+AGG | - | chr5.3:8961213-8961232 | None:intergenic | 25.0% |
| ! | GTTGTTCTATATGATAACAT+GGG | + | chr5.3:8960790-8960809 | MS.gene57193:CDS | 25.0% |
| ! | TAAAAAAAAACGTTGGAACT+TGG | + | chr5.3:8962992-8963011 | MS.gene57193:intron | 25.0% |
| ! | TCGACTATAAGTATATAGTT+TGG | + | chr5.3:8961293-8961312 | MS.gene57193:intron | 25.0% |
| ! | TCTCAGAATCAAAATATTCA+GGG | - | chr5.3:8960831-8960850 | None:intergenic | 25.0% |
| ! | TGTTGTTCTATATGATAACA+TGG | + | chr5.3:8960789-8960808 | MS.gene57193:CDS | 25.0% |
| !! | CTATTTGTTGAACAATTTGT+TGG | - | chr5.3:8963281-8963300 | None:intergenic | 25.0% |
| !! | TTTTATATGTGATTGTGACA+TGG | + | chr5.3:8961592-8961611 | MS.gene57193:intron | 25.0% |
| !!! | ACTCCTTTTTTTTTATACCT+AGG | + | chr5.3:8961207-8961226 | MS.gene57193:intron | 25.0% |
| !!! | ACTTCTGTACTGTTTTATTA+TGG | + | chr5.3:8962680-8962699 | MS.gene57193:intron | 25.0% |
| !!! | AGGAGTAACAATATTTTAAG+TGG | - | chr5.3:8961193-8961212 | None:intergenic | 25.0% |
| !!! | TTTATCTTCTCTTTTGAGTT+AGG | + | chr5.3:8961615-8961634 | MS.gene57193:intron | 25.0% |
| AATAACAAGTATTTACCTCG+TGG | - | chr5.3:8962080-8962099 | None:intergenic | 30.0% | |
| ACAAGTTTAAGGAAAAGATC+AGG | - | chr5.3:8960982-8961001 | None:intergenic | 30.0% | |
| ACTATTTACTCAACAAAAGG+AGG | + | chr5.3:8962861-8962880 | MS.gene57193:intron | 30.0% | |
| ATAACAAGTATTTACCTCGT+GGG | - | chr5.3:8962079-8962098 | None:intergenic | 30.0% | |
| ATCAAAATATTCAGGGTTAG+TGG | - | chr5.3:8960824-8960843 | None:intergenic | 30.0% | |
| ATTGAATCTTGCGTATTTGT+TGG | + | chr5.3:8960910-8960929 | MS.gene57193:CDS | 30.0% | |
| CAATCAATTCAACTTTAGCT+GGG | + | chr5.3:8961356-8961375 | MS.gene57193:intron | 30.0% | |
| CGAAAATCATCAACAAGATA+AGG | - | chr5.3:8960769-8960788 | None:intergenic | 30.0% | |
| CTCTCAGAATCAAAATATTC+AGG | - | chr5.3:8960832-8960851 | None:intergenic | 30.0% | |
| GAATCAATTATTCAACGCTA+TGG | + | chr5.3:8961685-8961704 | MS.gene57193:CDS | 30.0% | |
| GATTTCACTCAATCATAGTT+AGG | + | chr5.3:8962125-8962144 | MS.gene57193:intron | 30.0% | |
| TAGTCATATCTAAACAAAGG+TGG | + | chr5.3:8963298-8963317 | MS.gene57193:intron | 30.0% | |
| TATACAAGCTGAGAAAGATA+TGG | + | chr5.3:8961901-8961920 | MS.gene57193:CDS | 30.0% | |
| TATTGTTAAGCAACTTAGGT+AGG | - | chr5.3:8961513-8961532 | None:intergenic | 30.0% | |
| TCAATCAATTCAACTTTAGC+TGG | + | chr5.3:8961355-8961374 | MS.gene57193:intron | 30.0% | |
| TCAGCTTGTATAATATGACA+AGG | - | chr5.3:8961893-8961912 | None:intergenic | 30.0% | |
| TTCCTATTCTATCGATGAAT+TGG | + | chr5.3:8962816-8962835 | MS.gene57193:intron | 30.0% | |
| TTGAACGATGTGAATTACTT+TGG | + | chr5.3:8961641-8961660 | MS.gene57193:CDS | 30.0% | |
| ! | ACTCGTTAACAATTTGCTTA+AGG | - | chr5.3:8963157-8963176 | None:intergenic | 30.0% |
| ! | TCTTTTCCTTAAACTTGTCA+TGG | + | chr5.3:8960984-8961003 | MS.gene57193:CDS | 30.0% |
| !! | AATTACAAAGCTTGGTGTTA+TGG | + | chr5.3:8961713-8961732 | MS.gene57193:CDS | 30.0% |
| !! | TCTGTACTGTTTTATTATGG+CGG | + | chr5.3:8962683-8962702 | MS.gene57193:intron | 30.0% |
| !!! | AAGTTTTAGGAACAGGAAAT+AGG | + | chr5.3:8960686-8960705 | MS.gene57193:CDS | 30.0% |
| !!! | TGTTTTTGTTGTTAACGTGT+CGG | + | chr5.3:8961408-8961427 | MS.gene57193:intron | 30.0% |
| AACACCGGAATAACAATATC+TGG | - | chr5.3:8962028-8962047 | None:intergenic | 35.0% | |
| AACGATGTGAATTACTTTGG+AGG | + | chr5.3:8961644-8961663 | MS.gene57193:CDS | 35.0% | |
| AAGAAGCCAGATAAAGTCTA+AGG | - | chr5.3:8963382-8963401 | None:intergenic | 35.0% | |
| ACAACCTTATCGTAGACTTT+AGG | + | chr5.3:8962295-8962314 | MS.gene57193:intron | 35.0% | |
| ACGATAAGGTTGTGACATAA+CGG | - | chr5.3:8962288-8962307 | None:intergenic | 35.0% | |
| CGCACAAAATAGTTGTTCTT+TGG | + | chr5.3:8963506-8963525 | MS.gene57193:intron | 35.0% | |
| CTGTGTGGCCTAAATTTAAT+GGG | + | chr5.3:8962632-8962651 | MS.gene57193:intron | 35.0% | |
| CTTAAACTTGTCATGGTTTC+CGG | + | chr5.3:8960991-8961010 | MS.gene57193:CDS | 35.0% | |
| GAAGACATGTTCCTAATTTG+TGG | - | chr5.3:8963360-8963379 | None:intergenic | 35.0% | |
| GACCAATTCATCGATAGAAT+AGG | - | chr5.3:8962821-8962840 | None:intergenic | 35.0% | |
| GACGTTAGTTGGATTAAGAT+CGG | + | chr5.3:8962148-8962167 | MS.gene57193:intron | 35.0% | |
| GGATAGTTGTGTGGTAATTT+CGG | + | chr5.3:8962250-8962269 | MS.gene57193:intron | 35.0% | |
| GTACTGTCTGAATCATAGTT+GGG | + | chr5.3:8962715-8962734 | MS.gene57193:intron | 35.0% | |
| GTTTGTCCCCCATTAAATTT+AGG | - | chr5.3:8962643-8962662 | None:intergenic | 35.0% | |
| TACTAATTACCTTGGTGAAC+CGG | - | chr5.3:8961013-8961032 | None:intergenic | 35.0% | |
| TCTGTGTGGCCTAAATTTAA+TGG | + | chr5.3:8962631-8962650 | MS.gene57193:intron | 35.0% | |
| TGAATTGGTCAAATTATGCG+CGG | + | chr5.3:8962831-8962850 | MS.gene57193:intron | 35.0% | |
| TGGCTGAAAATTACAAAGCT+TGG | + | chr5.3:8961705-8961724 | MS.gene57193:CDS | 35.0% | |
| TGTACTGTCTGAATCATAGT+TGG | + | chr5.3:8962714-8962733 | MS.gene57193:intron | 35.0% | |
| TGTCTTCCTTAGACTTTATC+TGG | + | chr5.3:8963373-8963392 | MS.gene57193:intron | 35.0% | |
| TGTGTGGCCTAAATTTAATG+GGG | + | chr5.3:8962633-8962652 | MS.gene57193:intron | 35.0% | |
| ! | ATCTGCTTCCATTTTCATCA+AGG | - | chr5.3:8963680-8963699 | None:intergenic | 35.0% |
| ! | CTCACCAGATATTGTTATTC+CGG | + | chr5.3:8962021-8962040 | MS.gene57193:CDS | 35.0% |
| ! | TTAGACTTTATCTGGCTTCT+TGG | + | chr5.3:8963381-8963400 | MS.gene57193:intron | 35.0% |
| ! | TTTTTATCGAGTTTGGTTGG+TGG | + | chr5.3:8962322-8962341 | MS.gene57193:intron | 35.0% |
| !! | ATAGTTCTAGCTCATGGATT+TGG | + | chr5.3:8960712-8960731 | MS.gene57193:CDS | 35.0% |
| !! | CATTCTGTTTCTGCAATGAT+TGG | + | chr5.3:8960934-8960953 | MS.gene57193:CDS | 35.0% |
| !! | CTTTAAGTTAACTTGCAGAG+AGG | + | chr5.3:8962884-8962903 | MS.gene57193:intron | 35.0% |
| !!! | AACGTGAAAGTTTTAGGAAC+AGG | + | chr5.3:8960679-8960698 | MS.gene57193:CDS | 35.0% |
| !!! | AGGAGGTTTTTTATCGAGTT+TGG | + | chr5.3:8962315-8962334 | MS.gene57193:intron | 35.0% |
| !!! | GGTTTTTTATCGAGTTTGGT+TGG | + | chr5.3:8962319-8962338 | MS.gene57193:intron | 35.0% |
| AACTTAATATTGAGCCCACG+AGG | + | chr5.3:8962062-8962081 | MS.gene57193:CDS | 40.0% | |
| ACAAGCTGAGAAAGATATGG+CGG | + | chr5.3:8961904-8961923 | MS.gene57193:CDS | 40.0% | |
| ACCTCCTAAAGTCTACGATA+AGG | - | chr5.3:8962302-8962321 | None:intergenic | 40.0% | |
| ACCTTATCGTAGACTTTAGG+AGG | + | chr5.3:8962298-8962317 | MS.gene57193:intron | 40.0% | |
| ATATCTGGTGAGCTTAACTG+CGG | - | chr5.3:8962013-8962032 | None:intergenic | 40.0% | |
| CAATATGTACTTAACCCGCA+AGG | - | chr5.3:8962388-8962407 | None:intergenic | 40.0% | |
| CAGGTGATATCCCAATTTGT+TGG | - | chr5.3:8963223-8963242 | None:intergenic | 40.0% | |
| CGGAAACCATGACAAGTTTA+AGG | - | chr5.3:8960993-8961012 | None:intergenic | 40.0% | |
| CTATATGATAACATGGGTGC+TGG | + | chr5.3:8960796-8960815 | MS.gene57193:CDS | 40.0% | |
| GAGAGACATTCAAGCTTAGA+AGG | + | chr5.3:8960847-8960866 | MS.gene57193:CDS | 40.0% | |
| GAGTATCTTCACCAACACTT+GGG | + | chr5.3:8961944-8961963 | MS.gene57193:CDS | 40.0% | |
| GGCTTCATCCTTGATGAAAA+TGG | + | chr5.3:8963669-8963688 | MS.gene57193:CDS | 40.0% | |
| GTCGAACATTGTTCAACATG+AGG | + | chr5.3:8961792-8961811 | MS.gene57193:CDS | 40.0% | |
| GTGTGGCCTAAATTTAATGG+GGG | + | chr5.3:8962634-8962653 | MS.gene57193:intron | 40.0% | |
| TATGACAAGGCACAGTAACA+AGG | - | chr5.3:8961880-8961899 | None:intergenic | 40.0% | |
| TCATAGTTAGGGACGTTAGT+TGG | + | chr5.3:8962137-8962156 | MS.gene57193:intron | 40.0% | |
| TGAATGTGTCTAAGCAACAC+CGG | - | chr5.3:8962043-8962062 | None:intergenic | 40.0% | |
| TGGTATGGAAGAATGACAGT+GGG | + | chr5.3:8962532-8962551 | MS.gene57193:intron | 40.0% | |
| ! | AACAGTACAGAAGTTGACTC+TGG | - | chr5.3:8962674-8962693 | None:intergenic | 40.0% |
| ! | AGGAGGAAAAAGAGTACAAG+AGG | - | chr5.3:8962368-8962387 | None:intergenic | 40.0% |
| ! | CAAAGTGTTTCCACACAGAT+TGG | - | chr5.3:8960744-8960763 | None:intergenic | 40.0% |
| ! | GCTCACAACGTGAAAGTTTT+AGG | + | chr5.3:8960673-8960692 | MS.gene57193:CDS | 40.0% |
| ! | GGAGGAAAAAGAGTACAAGA+GGG | - | chr5.3:8962367-8962386 | None:intergenic | 40.0% |
| ! | TGTACTCTTTTTCCTCCTTG+CGG | + | chr5.3:8962370-8962389 | MS.gene57193:intron | 40.0% |
| ! | TTGATGAAGCCTCTGGATTT+TGG | - | chr5.3:8963630-8963649 | None:intergenic | 40.0% |
| !! | ACATAGCTCTAGTAGTGTCA+CGG | + | chr5.3:8961819-8961838 | MS.gene57193:CDS | 40.0% |
| !! | AGGTACATAGTTCTAGCTCA+TGG | + | chr5.3:8960706-8960725 | MS.gene57193:CDS | 40.0% |
| !! | GTTTTTGTTGATGAAGCCTC+TGG | - | chr5.3:8963637-8963656 | None:intergenic | 40.0% |
| ATCACTATGTTGTGGCTGTG+GGG | + | chr5.3:8962573-8962592 | MS.gene57193:intron | 45.0% | |
| ATTGGTCAAATTATGCGCGG+AGG | + | chr5.3:8962834-8962853 | MS.gene57193:intron | 45.0% | |
| ATTGTGTGTGTGACAGTGTG+AGG | - | chr5.3:8961124-8961143 | None:intergenic | 45.0% | |
| CATCACTATGTTGTGGCTGT+GGG | + | chr5.3:8962572-8962591 | MS.gene57193:intron | 45.0% | |
| CCACACTTTCCAAAATCCAG+AGG | + | chr5.3:8963618-8963637 | MS.gene57193:CDS | 45.0% | |
| CGTTGTCCATCACTATGTTG+TGG | + | chr5.3:8962565-8962584 | MS.gene57193:intron | 45.0% | |
| GACACTACTAGAGCTATGTC+TGG | - | chr5.3:8961818-8961837 | None:intergenic | 45.0% | |
| GCTCTACATGGATAGTTGTG+TGG | + | chr5.3:8962241-8962260 | MS.gene57193:intron | 45.0% | |
| GTGGTATGGAAGAATGACAG+TGG | + | chr5.3:8962531-8962550 | MS.gene57193:intron | 45.0% | |
| TATCTTCACCAACACTTGGG+TGG | + | chr5.3:8961947-8961966 | MS.gene57193:CDS | 45.0% | |
| TATGGATTCAGTGGCAGTAC+AGG | + | chr5.3:8961763-8961782 | MS.gene57193:CDS | 45.0% | |
| TATGTACTTAACCCGCAAGG+AGG | - | chr5.3:8962385-8962404 | None:intergenic | 45.0% | |
| TGAGAAAGATATGGCGGTTC+CGG | + | chr5.3:8961910-8961929 | MS.gene57193:CDS | 45.0% | |
| TTGGAACAGACCAATCTGTG+TGG | + | chr5.3:8960731-8960750 | MS.gene57193:CDS | 45.0% | |
| ! | ACCAATTGGAGTACTCTGTG+TGG | + | chr5.3:8962617-8962636 | MS.gene57193:intron | 45.0% |
| ! | GACTTTATCTGGCTTCTTGG+TGG | + | chr5.3:8963384-8963403 | MS.gene57193:intron | 45.0% |
| ! | GGAAAGTGTGGTAGTTTCTC+TGG | - | chr5.3:8963609-8963628 | None:intergenic | 45.0% |
| ! | GGAGTATCTTCACCAACACT+TGG | + | chr5.3:8961943-8961962 | MS.gene57193:CDS | 45.0% |
| ! | GTACTCTTTTTCCTCCTTGC+GGG | + | chr5.3:8962371-8962390 | MS.gene57193:intron | 45.0% |
| !! | CCTCTGGATTTTGGAAAGTG+TGG | - | chr5.3:8963621-8963640 | None:intergenic | 45.0% |
| !!! | ATAAAATAGATTTTAAAAAA+GGG | + | chr5.3:8961152-8961171 | MS.gene57193:intron | 5.0% |
| !!! | TATAAAATAGATTTTAAAAA+AGG | + | chr5.3:8961151-8961170 | MS.gene57193:intron | 5.0% |
| AACGACATCGACGCTCTACA+TGG | + | chr5.3:8962229-8962248 | MS.gene57193:intron | 50.0% | |
| AGATACTCCGAAACCACCAC+CGG | - | chr5.3:8961932-8961951 | None:intergenic | 50.0% | |
| AGTACAAGAGGGCCAAAACG+CGG | - | chr5.3:8962356-8962375 | None:intergenic | 50.0% | |
| CCACAGCCACAACATAGTGA+TGG | - | chr5.3:8962574-8962593 | None:intergenic | 50.0% | |
| CCATCACTATGTTGTGGCTG+TGG | + | chr5.3:8962571-8962590 | MS.gene57193:intron | 50.0% | |
| CGATGTCGTTAGAGGGAGAT+CGG | - | chr5.3:8962219-8962238 | None:intergenic | 50.0% | |
| GTGTTATGGATTCGCTCCAC+TGG | + | chr5.3:8961727-8961746 | MS.gene57193:CDS | 50.0% | |
| GTTGAGGTCATGACGACAGA+TGG | + | chr5.3:8961980-8961999 | MS.gene57193:CDS | 50.0% | |
| TCATGGTTTCCGGTTCACCA+AGG | + | chr5.3:8961001-8961020 | MS.gene57193:CDS | 50.0% | |
| TGTCGTCATGACCTCAACGA+TGG | - | chr5.3:8961978-8961997 | None:intergenic | 50.0% | |
| ! | GCCACACAGAGTACTCCAAT+TGG | - | chr5.3:8962621-8962640 | None:intergenic | 50.0% |
| !! | AGAGCGTCGATGTCGTTAGA+GGG | - | chr5.3:8962226-8962245 | None:intergenic | 50.0% |
| !! | ATCGAGTTTGGTTGGTGGTG+AGG | + | chr5.3:8962327-8962346 | MS.gene57193:intron | 50.0% |
| !! | TAGAGCGTCGATGTCGTTAG+AGG | - | chr5.3:8962227-8962246 | None:intergenic | 50.0% |
| GAAAGATATGGCGGTTCCGG+TGG | + | chr5.3:8961913-8961932 | MS.gene57193:CDS | 55.0% | |
| GGGTGGGGATATGGATTCAG+TGG | + | chr5.3:8961754-8961773 | MS.gene57193:CDS | 55.0% | |
| GTCGTTAGAGGGAGATCGGA+TGG | - | chr5.3:8962215-8962234 | None:intergenic | 55.0% | |
| GTGTGTGTGACAGTGTGAGG+CGG | - | chr5.3:8961121-8961140 | None:intergenic | 55.0% | |
| TGGACTGACCACCCAAGTGT+TGG | - | chr5.3:8961958-8961977 | None:intergenic | 55.0% | |
| ACTGGCTGTGGGTGGGGATA+TGG | + | chr5.3:8961745-8961764 | MS.gene57193:CDS | 60.0% | |
| AGATATGGCGGTTCCGGTGG+TGG | + | chr5.3:8961916-8961935 | MS.gene57193:CDS | 60.0% | |
| ATATCCCCACCCACAGCCAG+TGG | - | chr5.3:8961746-8961765 | None:intergenic | 60.0% | |
| GGGTGGTCAGTCCATCGTTG+AGG | + | chr5.3:8961964-8961983 | MS.gene57193:CDS | 60.0% | |
| ! | GGATTCGCTCCACTGGCTGT+GGG | + | chr5.3:8961734-8961753 | MS.gene57193:CDS | 60.0% |
| ! | TGGATTCGCTCCACTGGCTG+TGG | + | chr5.3:8961733-8961752 | MS.gene57193:CDS | 60.0% |
| !! | GTGGTGAGGTGTCCGCGTTT+TGG | + | chr5.3:8962341-8962360 | MS.gene57193:intron | 60.0% |
| ! | GGCGGTTCCGGTGGTGGTTT+CGG | + | chr5.3:8961922-8961941 | MS.gene57193:CDS | 65.0% |
| ! | TCGCTCCACTGGCTGTGGGT+GGG | + | chr5.3:8961738-8961757 | MS.gene57193:CDS | 65.0% |
| ! | TTCGCTCCACTGGCTGTGGG+TGG | + | chr5.3:8961737-8961756 | MS.gene57193:CDS | 65.0% |
| ! | CGCTCCACTGGCTGTGGGTG+GGG | + | chr5.3:8961739-8961758 | MS.gene57193:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 8960655 | 8963705 | 8960655 | ID=MS.gene57193 |
| chr5.3 | mRNA | 8960655 | 8963705 | 8960655 | ID=MS.gene57193.t1;Parent=MS.gene57193 |
| chr5.3 | exon | 8960655 | 8961022 | 8960655 | ID=MS.gene57193.t1.exon1;Parent=MS.gene57193.t1 |
| chr5.3 | CDS | 8960655 | 8961022 | 8960655 | ID=cds.MS.gene57193.t1;Parent=MS.gene57193.t1 |
| chr5.3 | exon | 8961637 | 8962083 | 8961637 | ID=MS.gene57193.t1.exon2;Parent=MS.gene57193.t1 |
| chr5.3 | CDS | 8961637 | 8962083 | 8961637 | ID=cds.MS.gene57193.t1;Parent=MS.gene57193.t1 |
| chr5.3 | exon | 8963603 | 8963705 | 8963603 | ID=MS.gene57193.t1.exon3;Parent=MS.gene57193.t1 |
| chr5.3 | CDS | 8963603 | 8963705 | 8963603 | ID=cds.MS.gene57193.t1;Parent=MS.gene57193.t1 |
| Gene Sequence |
| Protein sequence |
