AlfalfaGEDB | MS.gene57326

M. sativa cultivar XinJiangDaYe / MS.gene57326

KEGG: K14498
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57326.t1	XP_013446767.1	99.1	339	3	0	1	339	1	339	6.60E-194	686.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57326.t1	Q0D4J7	78.9	341	68	3	1	339	1	339	6.8e-155	548.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57326.t1	B7FI26	99.1	339	3	0	1	339	1	339	4.8e-194	686.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene33973	MS.gene57326	PPI
MS.gene57326	MS.gene006028	PPI
MS.gene57326	MS.gene041727	PPI
MS.gene60814	MS.gene57326	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57326.t1	MTR_8g089975	99.115	339	3	0	1	339	1	339	0.0	699
MS.gene57326.t1	MTR_5g064540	78.042	337	73	1	1	337	1	336	0.0	566
MS.gene57326.t1	MTR_3g086940	77.391	345	71	3	2	339	3	347	0.0	546
MS.gene57326.t1	MTR_8g089975	98.859	263	3	0	77	339	1	263	0.0	545
MS.gene57326.t1	MTR_4g086855	73.837	344	83	3	2	339	21	363	0.0	530
MS.gene57326.t1	MTR_4g099240	73.964	338	78	4	2	335	3	334	0.0	521
MS.gene57326.t1	MTR_2g006330	75.078	321	77	2	1	318	1	321	6.97e-179	499
MS.gene57326.t1	MTR_8g079560	69.679	343	98	3	2	339	21	362	8.59e-178	497
MS.gene57326.t1	MTR_1g034030	70.640	344	95	3	2	339	22	365	3.21e-177	495
MS.gene57326.t1	MTR_3g097320	76.589	299	68	1	1	297	1	299	1.13e-175	491

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57326.t1	AT4G33950	76.176	319	75	1	2	319	19	337	0.0	516
MS.gene57326.t1	AT4G33950	76.358	313	73	1	2	313	19	331	0.0	507
MS.gene57326.t1	AT4G40010	72.159	352	83	4	1	339	1	350	5.87e-180	502
MS.gene57326.t1	AT1G78290	79.599	299	57	1	1	299	1	295	2.14e-179	500
MS.gene57326.t1	AT1G78290	79.599	299	57	1	1	299	1	295	2.14e-179	500
MS.gene57326.t1	AT1G60940	78.261	299	63	1	1	297	1	299	9.21e-177	494
MS.gene57326.t1	AT1G60940	78.261	299	63	1	1	297	1	299	9.21e-177	494
MS.gene57326.t1	AT1G10940	77.258	299	66	1	1	297	1	299	1.17e-175	491
MS.gene57326.t1	AT5G66880	71.137	343	93	3	2	339	20	361	1.89e-175	491
MS.gene57326.t1	AT5G66880	71.137	343	93	3	2	339	20	361	1.89e-175	491

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Find 72 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGAGATTATAAATCAT+AGG	0.591024	4.1:-10589600	MS.gene57326:CDS
AAAGTGGGTGACCAGTTTCT+TGG	0.375074	4.1:-10586859	MS.gene57326:CDS
AACAATATTGGGATGCTTCA+AGG	0.402487	4.1:+10589576	None:intergenic
AACTCATTTAGCAATAGTGA+TGG	0.581745	4.1:-10589118	MS.gene57326:CDS
AAGAAGAGAATATGATGGAA+AGG	0.550931	4.1:-10587854	MS.gene57326:intron
AATATTGACTATAATTCAAG+AGG	0.562603	4.1:-10586905	MS.gene57326:CDS
AATTATCTCATATCGTTCCA+TGG	0.489564	4.1:+10589851	None:intergenic
ACAACAGTGATACCATTGAA+TGG	0.566933	4.1:+10588707	None:intergenic
ACCTCTGGTGCAATGTAAGC+AGG	0.439335	4.1:+10587883	None:intergenic
ACTTTGTATGTTATGCTTGT+TGG	0.369809	4.1:-10587680	MS.gene57326:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTCATTTAGCAATAGTGA+TGG	-	chr4.1:10587505-10587524	MS.gene57326:intron	30.0%
ACTTTGTATGTTATGCTTGT+TGG	-	chr4.1:10588943-10588962	MS.gene57326:intron	30.0%
AGCTCAAAGAAAATAACACA+TGG	+	chr4.1:10587199-10587218	None:intergenic	30.0%
ATCACTATTGCTAAATGAGT+TGG	+	chr4.1:10587506-10587525	None:intergenic	30.0%
CAAAGCTTATAAGGGAAAAA+TGG	-	chr4.1:10586826-10586845	MS.gene57326:CDS	30.0%
CATCAATCTACAAAACCAAA+TGG	+	chr4.1:10586994-10587013	None:intergenic	30.0%
TTATTGTGCATTTGATCGAT+CGG	-	chr4.1:10588212-10588231	MS.gene57326:intron	30.0%
TTGTCAAGAAGAGAATATGA+TGG	-	chr4.1:10588764-10588783	MS.gene57326:intron	30.0%
TTTACCACTAGAATTTATGG+AGG	-	chr4.1:10589640-10589659	MS.gene57326:intron	30.0%
TTTGAAAGAATTTGTACTGC+TGG	-	chr4.1:10587551-10587570	MS.gene57326:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	10586774	10589871	10586774	ID=MS.gene57326
chr4.1	mRNA	10586774	10589871	10586774	ID=MS.gene57326.t1;Parent=MS.gene57326
chr4.1	exon	10589752	10589871	10589752	ID=MS.gene57326.t1.exon1;Parent=MS.gene57326.t1
chr4.1	CDS	10589752	10589871	10589752	ID=cds.MS.gene57326.t1;Parent=MS.gene57326.t1
chr4.1	exon	10589564	10589638	10589564	ID=MS.gene57326.t1.exon2;Parent=MS.gene57326.t1
chr4.1	CDS	10589564	10589638	10589564	ID=cds.MS.gene57326.t1;Parent=MS.gene57326.t1
chr4.1	exon	10589053	10589154	10589053	ID=MS.gene57326.t1.exon3;Parent=MS.gene57326.t1
chr4.1	CDS	10589053	10589154	10589053	ID=cds.MS.gene57326.t1;Parent=MS.gene57326.t1
chr4.1	exon	10588720	10588773	10588720	ID=MS.gene57326.t1.exon4;Parent=MS.gene57326.t1
chr4.1	CDS	10588720	10588773	10588720	ID=cds.MS.gene57326.t1;Parent=MS.gene57326.t1
chr4.1	exon	10588542	10588634	10588542	ID=MS.gene57326.t1.exon5;Parent=MS.gene57326.t1
chr4.1	CDS	10588542	10588634	10588542	ID=cds.MS.gene57326.t1;Parent=MS.gene57326.t1
chr4.1	exon	10587855	10587947	10587855	ID=MS.gene57326.t1.exon6;Parent=MS.gene57326.t1
chr4.1	CDS	10587855	10587947	10587855	ID=cds.MS.gene57326.t1;Parent=MS.gene57326.t1
chr4.1	exon	10587625	10587729	10587625	ID=MS.gene57326.t1.exon7;Parent=MS.gene57326.t1
chr4.1	CDS	10587625	10587729	10587625	ID=cds.MS.gene57326.t1;Parent=MS.gene57326.t1
chr4.1	exon	10587409	10587507	10587409	ID=MS.gene57326.t1.exon8;Parent=MS.gene57326.t1
chr4.1	CDS	10587409	10587507	10587409	ID=cds.MS.gene57326.t1;Parent=MS.gene57326.t1
chr4.1	exon	10586774	10587052	10586774	ID=MS.gene57326.t1.exon9;Parent=MS.gene57326.t1
chr4.1	CDS	10586774	10587052	10586774	ID=cds.MS.gene57326.t1;Parent=MS.gene57326.t1

Gene Sequence

>MS.gene57326

ATGGAACGATATGAGATAATTAAAGATATTGGATCAGGTAACTTTGGTGTTGCAAAGCTTATAAGGGAAAAATGGAGTGGCGAGTTATATGCTGTCAAGTTCATTGAAAGAGGCTTTAAGGTCCTTTTTTTAACTCCATTTTTTTGGTCTTTCTATGTCTTGCTATATAAATGAACTTTGCATTGTGCTCCATTTATATATGATGTTTAATTTAATTCCATTTGGTTTTGTAGATTGATGAGCACGTGCAAAGGGAGATTATAAATCATAGGTCCTTGAAGCATCCCAATATTGTTAGATTTAAAGAGGTACATACTTTTTGAAAAACATTTTAAATGAGTTAGGTTTCGGAAGCTCACCGGAGATAAACTTAAAGTTTTAATTGTGTCATTATTATGCATTCTATTTCTTCTGAGAATGTACCATGTGTTATTTTCTTTGAGCTCATGCTTGCATTTTTTATTGTTGTTGAACTAGTGCTTTCTTTTGCTACTTCATACCAACTTTATAAAAGTAATAATGCAATGAGTGCTGTATATACAGTGTCTTTTGCTACTTCATCATGATTCTGTTTTTTACTCTGTTGTATACAGTAGCGCTCAATATTGAATATCATTTAATTTTTTTGTTTTTGTTTTCTCCTTGAAAGGAATTCCAAAAATCTTTGGAAAACTTTTCAATTTATGCCAATACATATGAAATGTCCATTCATTGCAGGTGTTGCTGACTCCAACTCATTTAGCAATAGTGATGGAATATGCTGCTGGGGGAGAACTATTTGAAAGAATTTGTACTGCTGGTAGATTCAGTGAGGACGAGGTAGTTTAATTAACTATTTTAGATTCTAGAAAACAGTAATTAGGATTTCATGCAAGTAATATATTAACAAGTGGGAGTACTTTTCTGCTTAAGCAAATATATACTTTACTTCAATAATCAATAGTAATAGTAACATATTTTAGCCATAAATTTTAATATTTTTATGTAACAATTTGTTTCGTCATGGTTTTTTTAATGTTACACATGCACAGTATTAGCATTTCACATTCTACATAATTTCATCTTAAATTCTGATTTTTTTTTTCTTCTTTCATATAGGCAAGATATTTCTTCCAGCAACTGATTTCTGGAGTCAGCTATTGCCATTCAATGGTATCACTGTTGTTCAATCTGATTTATATTGCTGTTTCAGTCTCACAGCTTTAGCTTAAACTTAAAAGCTATCATTTTCTTGCAGGAAATTTGCCATAGAGATCTTAAGCTAGAAAACACACTTCTAGATGGAAGTTCAGCACCACGACTCAAAATATGTGACTTTGGTTACTCAAAGGCAAGAACTAATTGTCACTAAAATTTCATTTAACATATGTTTCATGTGAAGCACATACACAGATACACGACATAGGTAATAGTTTAAGAAAATACAAATAATGTAATGTTATTGTGCATTTGATCGATCGGTTAAAAATGAAGAAAAGTGCATGACAAATCTAGTTGTACGTTGTTTGATTTGTCAAACTGTTTTAGGGACGGGATAAACTAGAGACAAGAGACATGAAATTTTTTGTCCTCACTAAACCGCAACACAACCTTTTATCTCACGTGCGAGTTGTCTAAGATATCAAATAACATGTTGCCGCCAATAATTGATAAAACAAAAATTATTCAATATCATAAAAATTTGTTATTGTGTTGTTCTCATGTCCGTCTCAACCAATTTTGAGGCCTAAAGCAAATTCTAAGAGTGATGTCATTTTAAAATTAGTATATTTTTCAAAACTTATTTTATGTAAATTTTATCTTTCTATCATTTTTCATATGCAAAATTGCTTATTAAATTATCATAATCAATTTTATTTAACAATTCTTTTTCATTGGATAATAAAGTCAACTCATATTTAACGATTATTTTTATATTTTGCAGTCATCTGTTCTACACTCCCAGCCAAAATCAACTGTAGGAACCCCTGCTTACATTGCACCAGAGGTATTGTCAAGAAGAGAATATGATGGAAAGGTAACTAATTAAATTTAATCAATCTAATCAATCTACACAAGAAAAAAAAAAATGTAAGCGTGTGGTCTTCCTCATTTAGAGATAAAATTTGATCAAAAAATATTCTTATCCTTGAGAGTGATTAGATTGCAGATGTTTGGTCTTGTGGGGTAACTTTGTATGTTATGCTTGTTGGTGCTTATCCTTTTGAAGATCCAGAAGACCCCAAAAACTTCAAAAAAACACTTCAGGTTAGTTGAACAATTAAATACTTACTAGTTGATTTAATTAATTTGCTATGGTACCCCTGGTGTAACATACATAACCAATACGTAATATATTAATTTTTTTCTGGATAATTTTGACAGCGAATTCTTAGTGTCCACTATTCAATTCCAGACTATGTTCGCATTACTCAAGAGTGCAGACATCTTTTATCTAGAATATTTGTTGCCAACCCTGATAAGGTAAAAACAATTTTTTGAGTTTCTTGCCTAACTCAACATTTCAGACTATTATAGCGTATTCAAAATTTTAAATTGCGGCTGGCCGATCCAGGTTGGTCTAGTTGTTAACGTTCTTTAAATATTGAGGTGTAAGAATCAACTCATCCAAACTTTTCTTATAAAAGACGATAATAAATTGTGGCTCAAGTTGCTAAATAAAAGAAAATTAAATTGTACGACATTAATTTCAAGGGACGTAGATGTTTGTGTCACTTTAATTAATTAATGATGGTTTTAAAATAAATAAAAAATAGCAAAAACTGAGTACATTTTTTTATTGATTTTTGTGATGTTAACTTTTATTATTAATGATGCAGAGAATTACCATACCAGAGATTAAAAAACACCCTTGGTTCTTAAAGAATTTACCACTAGAATTTATGGAGGATGGTGAAAATTGGTCACAAAATGATGAAAATAATTCATCTCAAAGCATAGAAGAAATATTGACTATAATTCAAGAGGCTATGAAAGCAGGGGATGGTCCAAAAGTGGGTGACCAGTTTCTTGGTGGAAGTATGGATTTTGATGATTTAGATACAGATGCTGACATCGATGATATTGAAACCAGCGGTGATTTTGTTTGTGCCTTGTGA

Protein sequence

>MS.gene57326.t1

MERYEIIKDIGSGNFGVAKLIREKWSGELYAVKFIERGFKIDEHVQREIINHRSLKHPNIVRFKEVLLTPTHLAIVMEYAAGGELFERICTAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFKKTLQRILSVHYSIPDYVRITQECRHLLSRIFVANPDKRITIPEIKKHPWFLKNLPLEFMEDGENWSQNDENNSSQSIEEILTIIQEAMKAGDGPKVGDQFLGGSMDFDDLDTDADIDDIETSGDFVCAL