AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57416

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57416.t1 MTR_8g093530 98.551 276 2 1 1 276 1 274 0.0 559
MS.gene57416.t1 MTR_3g090120 52.308 260 102 3 34 274 59 315 1.58e-91 278
MS.gene57416.t1 MTR_7g094750 56.180 178 76 2 92 268 91 267 1.22e-68 216
MS.gene57416.t1 MTR_7g094750 56.180 178 76 2 92 268 91 267 1.72e-67 216
MS.gene57416.t1 MTR_2g022560 48.066 181 94 0 92 272 97 277 1.48e-59 196
MS.gene57416.t1 MTR_7g109550 46.893 177 92 1 92 268 137 311 9.54e-55 184
MS.gene57416.t1 MTR_4g126950 40.217 184 109 1 89 272 106 288 1.38e-51 175
MS.gene57416.t1 MTR_4g121560 42.632 190 108 1 80 268 102 291 7.54e-51 173
MS.gene57416.t1 MTR_5g033800 41.530 183 105 1 90 272 143 323 1.01e-50 171
MS.gene57416.t1 MTR_0136s0010 44.974 189 93 3 89 272 167 349 1.49e-50 174
MS.gene57416.t1 MTR_7g093450 44.444 189 94 3 89 272 245 427 1.54e-50 175
MS.gene57416.t1 MTR_5g033800 41.530 183 105 1 90 272 143 323 1.43e-49 171
MS.gene57416.t1 MTR_1g058380 37.391 230 138 4 44 268 5 233 4.87e-48 165
MS.gene57416.t1 MTR_8g069790 40.212 189 111 1 84 272 170 356 6.15e-47 164
MS.gene57416.t1 MTR_5g059400 40.107 187 107 2 88 272 171 354 4.68e-46 162
MS.gene57416.t1 MTR_1g116130 40.107 187 107 2 88 272 171 354 4.68e-46 162
MS.gene57416.t1 MTR_2g073500 38.743 191 95 6 87 269 24 200 8.13e-38 136
MS.gene57416.t1 MTR_3g464570 36.517 178 100 2 92 269 43 207 1.66e-36 134
MS.gene57416.t1 MTR_2g022580 48.780 123 63 0 152 274 2 124 3.66e-36 125
MS.gene57416.t1 MTR_4g087730 37.569 181 99 3 89 269 42 208 1.54e-35 130
MS.gene57416.t1 MTR_4g088030 37.640 178 97 3 92 269 33 196 2.35e-35 130
MS.gene57416.t1 MTR_4g014440 34.783 184 108 4 89 268 59 234 4.72e-35 130
MS.gene57416.t1 MTR_4g016940 34.615 182 109 3 90 269 84 257 5.03e-35 130
MS.gene57416.t1 MTR_7g070060 35.714 182 105 5 91 268 63 236 7.28e-35 127
MS.gene57416.t1 MTR_5g071350 36.559 186 102 3 83 268 52 221 1.72e-34 129
MS.gene57416.t1 MTR_1g050448 33.831 201 117 4 74 271 32 219 2.21e-34 128
MS.gene57416.t1 MTR_8g463790 35.165 182 108 3 92 271 71 244 4.82e-34 127
MS.gene57416.t1 MTR_3g070900 35.754 179 107 2 92 269 106 277 5.32e-34 128
MS.gene57416.t1 MTR_1g111010 38.743 191 93 9 90 276 30 200 5.62e-34 126
MS.gene57416.t1 MTR_7g070060 35.714 182 105 5 91 268 63 236 8.73e-34 127
MS.gene57416.t1 MTR_3g021060 34.066 182 106 4 90 271 44 211 8.99e-34 126
MS.gene57416.t1 MTR_7g068920 31.492 181 116 2 90 269 78 251 1.04e-32 124
MS.gene57416.t1 MTR_2g073510 37.569 181 96 5 90 268 31 196 1.32e-32 122
MS.gene57416.t1 MTR_3g049330 36.313 179 98 4 92 269 31 194 1.38e-32 122
MS.gene57416.t1 MTR_5g035090 34.392 189 108 4 91 275 82 258 1.41e-32 124
MS.gene57416.t1 MTR_1g112210 34.615 182 106 3 90 271 57 225 1.77e-32 123
MS.gene57416.t1 MTR_2g015720 32.547 212 127 5 59 269 8 204 2.38e-32 122
MS.gene57416.t1 MTR_5g034810 36.500 200 107 5 69 268 16 195 5.83e-32 121
MS.gene57416.t1 MTR_4g014430 32.979 188 116 3 92 276 108 288 9.80e-32 122
MS.gene57416.t1 MTR_5g083260 27.969 261 167 5 19 269 5 254 1.80e-31 121
MS.gene57416.t1 MTR_1g112210 36.264 182 90 4 90 271 57 212 3.89e-31 119
MS.gene57416.t1 MTR_3g071650 33.520 179 111 2 92 269 89 260 1.93e-30 118
MS.gene57416.t1 MTR_6g061710 32.474 194 118 5 83 274 158 340 2.19e-30 119
MS.gene57416.t1 MTR_6g016880 34.392 189 115 4 89 275 75 256 7.34e-30 117
MS.gene57416.t1 MTR_5g082880 34.066 182 113 4 90 269 163 339 7.96e-30 117
MS.gene57416.t1 MTR_2g091175 34.426 183 106 4 87 269 45 213 1.45e-29 115
MS.gene57416.t1 MTR_2g016060 37.222 180 104 5 93 267 56 231 2.33e-29 115
MS.gene57416.t1 MTR_4g079700 32.990 194 115 5 76 269 32 210 2.56e-29 114
MS.gene57416.t1 MTR_5g035150 34.225 187 114 4 90 275 83 261 4.01e-29 114
MS.gene57416.t1 MTR_8g027900 33.158 190 114 4 90 275 209 389 4.93e-29 115
MS.gene57416.t1 MTR_3g021090 30.645 186 115 3 90 275 29 200 7.80e-29 114
MS.gene57416.t1 MTR_7g019120 35.079 191 109 6 90 275 77 257 1.47e-28 113
MS.gene57416.t1 MTR_3g109840 33.511 188 105 5 92 275 73 244 2.69e-28 112
MS.gene57416.t1 MTR_5g035080 32.402 179 108 3 92 269 75 241 2.77e-28 112
MS.gene57416.t1 MTR_3g035830 29.570 186 117 3 90 275 29 200 3.07e-28 111
MS.gene57416.t1 MTR_7g033230 33.696 184 108 4 88 269 260 431 4.38e-28 113
MS.gene57416.t1 MTR_7g033230 33.696 184 108 4 88 269 330 501 4.64e-28 113
MS.gene57416.t1 MTR_8g104970 32.804 189 105 5 90 271 118 291 7.42e-28 112
MS.gene57416.t1 MTR_1g076690 31.633 196 123 4 80 274 211 396 2.39e-27 111
MS.gene57416.t1 MTR_8g099300 33.690 187 115 4 91 275 73 252 2.61e-27 109
MS.gene57416.t1 MTR_6g016875 34.872 195 119 4 84 275 56 245 2.98e-27 109
MS.gene57416.t1 MTR_5g035120 42.857 91 52 0 90 180 73 163 6.84e-26 100
MS.gene57416.t1 MTR_6g007777 26.689 296 153 8 23 267 4 286 1.05e-25 105
MS.gene57416.t1 MTR_7g019140 42.857 91 52 0 90 180 77 167 6.96e-24 95.5
MS.gene57416.t1 MTR_5g035070 30.811 185 119 4 92 275 87 263 3.80e-23 98.2
MS.gene57416.t1 MTR_4g125060 30.457 197 129 4 84 273 124 319 2.27e-21 93.6
MS.gene57416.t1 MTR_4g125060 30.457 197 129 4 84 273 163 358 3.57e-21 93.2
MS.gene57416.t1 MTR_4g125060 30.457 197 129 4 84 273 192 387 4.62e-21 92.8
MS.gene57416.t1 MTR_8g093870 30.526 190 122 5 92 273 133 320 1.00e-20 91.7
MS.gene57416.t1 MTR_4g092830 30.645 186 111 6 92 268 48 224 1.71e-19 87.8
MS.gene57416.t1 MTR_3g464570 35.088 114 61 2 156 269 3 103 5.14e-16 76.3
MS.gene57416.t1 MTR_7g070060 32.000 125 74 4 147 268 18 134 3.72e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57416.t1 AT1G48880 61.868 257 90 2 22 276 49 299 3.39e-111 328
MS.gene57416.t1 AT5G19160 41.538 260 131 4 27 268 19 275 2.55e-64 205
MS.gene57416.t1 AT5G19160 41.538 260 131 4 27 268 19 275 4.17e-63 205
MS.gene57416.t1 AT3G06080 48.108 185 96 0 92 276 103 287 1.69e-61 198
MS.gene57416.t1 AT3G06080 48.108 185 96 0 92 276 103 287 1.55e-60 199
MS.gene57416.t1 AT3G62390 43.229 192 107 1 77 268 123 312 4.98e-57 188
MS.gene57416.t1 AT3G62390 43.229 192 107 1 77 268 123 312 2.57e-56 188
MS.gene57416.t1 AT5G20590 44.865 185 100 2 89 272 138 321 3.11e-54 180
MS.gene57416.t1 AT5G20590 44.865 185 100 2 89 272 138 321 3.53e-53 180
MS.gene57416.t1 AT5G06230 40.500 200 109 2 81 272 51 248 2.80e-52 173
MS.gene57416.t1 AT5G06230 40.196 204 112 2 81 276 10 211 1.24e-51 173
MS.gene57416.t1 AT5G06230 40.196 204 112 2 81 276 51 252 3.08e-51 173
MS.gene57416.t1 AT3G11570 47.305 167 88 0 108 274 98 264 3.02e-50 171
MS.gene57416.t1 AT3G12060 42.935 184 104 1 89 272 193 375 3.43e-49 171
MS.gene57416.t1 AT5G06700 42.391 184 105 1 89 272 252 434 5.60e-48 168
MS.gene57416.t1 AT5G49340 45.503 189 100 3 89 275 97 284 7.08e-48 165
MS.gene57416.t1 AT1G60790 41.530 183 104 2 92 272 190 371 8.33e-47 164
MS.gene57416.t1 AT5G58600 37.640 178 97 3 92 268 66 230 1.50e-40 142
MS.gene57416.t1 AT5G58600 37.640 178 97 3 92 268 66 230 1.01e-39 142
MS.gene57416.t1 AT1G29050 33.032 221 125 4 59 269 18 225 1.61e-38 139
MS.gene57416.t1 AT2G30010 39.444 180 93 5 92 268 56 222 2.94e-37 136
MS.gene57416.t1 AT2G30010 39.444 180 93 5 92 268 99 265 4.09e-37 136
MS.gene57416.t1 AT2G34070 36.517 178 100 2 92 269 65 229 9.34e-37 134
MS.gene57416.t1 AT3G14850 36.723 177 98 3 92 268 34 196 6.60e-36 131
MS.gene57416.t1 AT2G40150 34.444 180 110 2 91 269 70 242 1.86e-35 132
MS.gene57416.t1 AT2G30900 37.363 182 94 6 92 269 43 208 1.32e-34 126
MS.gene57416.t1 AT2G31110 36.170 188 104 6 84 269 35 208 3.79e-34 125
MS.gene57416.t1 AT2G30900 37.363 182 94 6 92 269 43 208 1.26e-33 125
MS.gene57416.t1 AT2G31110 35.751 193 108 6 79 269 30 208 3.68e-33 124
MS.gene57416.t1 AT2G38320 32.240 183 112 4 90 268 57 231 4.15e-33 125
MS.gene57416.t1 AT3G11030 34.831 178 108 2 92 268 106 276 4.22e-33 125
MS.gene57416.t1 AT5G01360 32.044 181 115 2 90 269 34 207 4.48e-33 124
MS.gene57416.t1 AT1G78710 34.848 198 107 6 74 268 15 193 6.89e-33 122
MS.gene57416.t1 AT5G01360 32.044 181 115 2 90 269 90 263 8.93e-33 124
MS.gene57416.t1 AT5G01620 29.710 276 158 6 8 268 35 289 1.01e-32 125
MS.gene57416.t1 AT5G01620 33.333 195 119 3 76 268 96 281 1.05e-32 125
MS.gene57416.t1 AT5G01620 33.333 195 119 3 76 268 96 281 1.05e-32 125
MS.gene57416.t1 AT3G55990 33.149 181 113 2 90 269 138 311 2.72e-32 124
MS.gene57416.t1 AT3G54260 34.807 181 105 3 92 272 51 218 2.75e-32 122
MS.gene57416.t1 AT1G73140 32.979 188 116 3 84 269 59 238 3.04e-32 123
MS.gene57416.t1 AT1G78710 34.848 198 107 6 74 268 22 200 3.90e-32 121
MS.gene57416.t1 AT2G40160 32.787 183 114 3 89 269 74 249 3.91e-31 118
MS.gene57416.t1 AT2G42570 31.633 196 114 4 80 269 29 210 1.32e-30 117
MS.gene57416.t1 AT2G40160 32.787 183 114 3 89 269 74 249 1.44e-30 119
MS.gene57416.t1 AT2G40160 32.787 183 114 3 89 269 74 249 2.19e-30 118
MS.gene57416.t1 AT2G40320 32.961 179 112 2 92 269 81 252 1.24e-29 116
MS.gene57416.t1 AT1G01430 33.871 186 114 5 91 275 98 275 2.25e-29 115
MS.gene57416.t1 AT4G23790 37.368 190 109 6 89 275 76 258 3.17e-28 112
MS.gene57416.t1 AT1G70230 32.979 188 110 5 92 275 79 254 5.66e-28 111
MS.gene57416.t1 AT5G15890 35.135 185 109 4 92 275 187 361 8.66e-28 112
MS.gene57416.t1 AT4G11090 34.375 192 112 6 89 275 76 258 8.83e-28 111
MS.gene57416.t1 AT3G02440 35.000 180 105 4 92 268 135 305 2.17e-27 110
MS.gene57416.t1 AT3G02440 35.196 179 104 4 92 267 127 296 2.21e-27 110
MS.gene57416.t1 AT4G25360 32.258 186 113 5 91 274 174 348 2.93e-27 110
MS.gene57416.t1 AT4G25360 32.258 186 113 5 91 274 174 348 2.93e-27 110
MS.gene57416.t1 AT5G64470 36.170 188 99 8 92 268 55 232 1.59e-26 105
MS.gene57416.t1 AT5G64470 36.170 188 99 8 92 268 55 232 1.82e-26 105
MS.gene57416.t1 AT5G15900 35.165 182 103 6 92 267 67 239 3.77e-26 106
MS.gene57416.t1 AT5G15900 35.165 182 103 6 92 267 86 258 4.10e-26 106
MS.gene57416.t1 AT4G01080 32.804 189 108 4 91 275 90 263 4.46e-26 106
MS.gene57416.t1 AT5G64470 36.170 188 99 8 92 268 55 232 6.50e-26 105
MS.gene57416.t1 AT5G64470 36.170 188 99 8 92 268 55 232 7.51e-26 105
MS.gene57416.t1 AT3G28150 33.516 182 106 6 91 267 69 240 1.59e-24 102
MS.gene57416.t1 AT2G38320 31.333 150 92 3 122 268 7 148 3.81e-24 99.8
MS.gene57416.t1 AT5G51640 30.811 185 117 3 91 274 137 311 4.16e-24 101
MS.gene57416.t1 AT5G64020 30.526 190 122 5 92 273 57 244 2.26e-21 93.2
MS.gene57416.t1 AT2G37720 29.167 192 128 4 89 273 140 330 2.15e-20 90.9
MS.gene57416.t1 AT2G14530 30.303 198 118 7 88 273 58 247 1.85e-19 87.8
MS.gene57416.t1 AT5G20680 29.293 198 118 6 90 273 116 305 8.31e-19 85.9
MS.gene57416.t1 AT5G20680 29.293 198 118 6 90 273 210 399 9.99e-19 86.3
MS.gene57416.t1 AT5G20680 29.293 198 118 6 90 273 210 399 9.99e-19 86.3
MS.gene57416.t1 AT5G20680 29.293 198 118 6 90 273 210 399 9.99e-19 86.3
MS.gene57416.t1 AT5G20680 29.293 198 118 6 90 273 210 399 9.99e-19 86.3
MS.gene57416.t1 AT5G20680 29.293 198 118 6 90 273 192 381 1.14e-18 85.9
MS.gene57416.t1 AT3G14850 32.710 107 58 3 162 268 1 93 9.81e-11 61.2

Find 43 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCAAAGCGGTTGATAAT+TGG 0.219439 4.3:+8290067 None:intergenic
TGGAAATGTTGAGGAGTAAA+AGG 0.261320 4.3:-8289685 MS.gene57416:CDS
GTTGGAATTTCACAACTCTT+AGG 0.273880 4.3:+8289728 None:intergenic
ATCAGATTACAAAGAGGATT+AGG 0.354758 4.3:-8289556 MS.gene57416:CDS
AAAGCGGTTGATAATTGGTT+TGG 0.356984 4.3:+8290072 None:intergenic
GAACAAGGATTTGATTGTTT+AGG 0.359561 4.3:-8289794 MS.gene57416:CDS
AGGAAATGGAAGAAGTGATT+TGG 0.360249 4.3:-8289774 MS.gene57416:CDS
GGAACATGGGTTCAAGTATC+TGG 0.373068 4.3:-8289854 MS.gene57416:CDS
GATATTCTTATATTCAATAC+TGG 0.385489 4.3:-8289371 MS.gene57416:CDS
GGATTTGATTGTTTAGGAAA+TGG 0.407456 4.3:-8289788 MS.gene57416:CDS
AAGCGGTTGATAATTGGTTT+GGG 0.409808 4.3:+8290073 None:intergenic
AGAATGAGATCTTCTGTTGA+AGG 0.411442 4.3:+8290111 None:intergenic
GCTTTGGATGTGTTTCTTTG+AGG 0.416695 4.3:-8290054 MS.gene57416:CDS
AAACCAATTATCAACCGCTT+TGG 0.428304 4.3:-8290070 MS.gene57416:CDS
TCCTTCTTTATAGCAATTGG+TGG 0.441666 4.3:-8289998 MS.gene57416:CDS
TTGATTTGTATGTTGATGAC+TGG 0.450820 4.3:-8289617 MS.gene57416:CDS
TTCTTTATAGCAATTGGTGG+TGG 0.458019 4.3:-8289995 MS.gene57416:CDS
AGTGTTGATTTAACCCTCCT+TGG 0.459189 4.3:+8289440 None:intergenic
TCAAATCCTTGTTCAACAAA+AGG 0.464197 4.3:+8289803 None:intergenic
GGAAATGTTGAGGAGTAAAA+GGG 0.480993 4.3:-8289684 MS.gene57416:CDS
TTCAATGAGTAGAACTCAAT+GGG 0.495930 4.3:-8289645 MS.gene57416:CDS
ATTCAATGAGTAGAACTCAA+TGG 0.504721 4.3:-8289646 MS.gene57416:CDS
TTATATTCAATACTGGTCAC+TGG 0.507782 4.3:-8289364 MS.gene57416:CDS
AGATCTCATTCTCAACCTCT+TGG 0.514412 4.3:-8290100 MS.gene57416:CDS
TTTCTTGGTACAGCAGCGTC+CGG 0.518646 4.3:-8289477 MS.gene57416:CDS
ACCACCAATTGCTATAAAGA+AGG 0.526497 4.3:+8289997 None:intergenic
CTTGGTGCATGTTCATGAGC+CGG 0.529839 4.3:+8289458 None:intergenic
ACAGCACCAACATCAAAAGT+TGG 0.536992 4.3:+8289710 None:intergenic
TAGATGATATAAGTCATCAA+TGG 0.537422 4.3:-8289403 MS.gene57416:CDS
TACGTGTGGAAAAGCTTAGA+TGG 0.556442 4.3:+8289335 None:intergenic
TATTCAATACTGGTCACTGG+TGG 0.581699 4.3:-8289361 MS.gene57416:CDS
TATGTTGATGACTGGTGTGG+AGG 0.600077 4.3:-8289609 MS.gene57416:CDS
TTGTATGTTGATGACTGGTG+TGG 0.600347 4.3:-8289612 MS.gene57416:CDS
TCATGAACATGCACCAAGGA+GGG 0.607670 4.3:-8289453 MS.gene57416:CDS
ATTCAATACTGGTCACTGGT+GGG 0.631466 4.3:-8289360 MS.gene57416:CDS
ATCAGAATCAGATTACAAAG+AGG 0.636550 4.3:-8289562 MS.gene57416:CDS
CACTCAGTTGCATTATACAA+AGG 0.639596 4.3:+8289827 None:intergenic
AAAGAATGGAACCTTACGTG+TGG 0.657198 4.3:+8289321 None:intergenic
CTCATGAACATGCACCAAGG+AGG 0.668023 4.3:-8289454 MS.gene57416:CDS
GGCTTTGTCACAAACATGAG+TGG 0.668070 4.3:-8290157 None:intergenic
ATTGGTTTGGGACTACCAAG+AGG 0.679709 4.3:+8290085 None:intergenic
CGGCTCATGAACATGCACCA+AGG 0.691315 4.3:-8289457 MS.gene57416:CDS
TCAAAGAAACACATCCAAAG+CGG 0.695679 4.3:+8290056 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATTCTTATATTCAATAC+TGG - chr4.3:8290105-8290124 MS.gene57416:CDS 20.0%
! TAGATGATATAAGTCATCAA+TGG - chr4.3:8290073-8290092 MS.gene57416:CDS 25.0%
!! TTTTCCTTCTTTATAGCAAT+TGG - chr4.3:8289475-8289494 MS.gene57416:CDS 25.0%
!!! AGAAAATGTGATGTTTTTGA+TGG - chr4.3:8289601-8289620 MS.gene57416:CDS 25.0%
!!! ATCACACATGCTTTTTTTAA+TGG - chr4.3:8289526-8289545 MS.gene57416:CDS 25.0%
!!! ATTTTTTCGATCTGTTTTCT+TGG - chr4.3:8289984-8290003 MS.gene57416:CDS 25.0%
ATCAGAATCAGATTACAAAG+AGG - chr4.3:8289914-8289933 MS.gene57416:CDS 30.0%
ATCAGATTACAAAGAGGATT+AGG - chr4.3:8289920-8289939 MS.gene57416:CDS 30.0%
ATTCAATGAGTAGAACTCAA+TGG - chr4.3:8289830-8289849 MS.gene57416:CDS 30.0%
GAACAAGGATTTGATTGTTT+AGG - chr4.3:8289682-8289701 MS.gene57416:CDS 30.0%
GGATTTGATTGTTTAGGAAA+TGG - chr4.3:8289688-8289707 MS.gene57416:CDS 30.0%
TCAAATCCTTGTTCAACAAA+AGG + chr4.3:8289676-8289695 None:intergenic 30.0%
TTATATTCAATACTGGTCAC+TGG - chr4.3:8290112-8290131 MS.gene57416:CDS 30.0%
TTCAATGAGTAGAACTCAAT+GGG - chr4.3:8289831-8289850 MS.gene57416:CDS 30.0%
! AAAAAAGCATGTGTGATACT+AGG + chr4.3:8289523-8289542 None:intergenic 30.0%
! ACAAAGAGGATTAGGTTTTT+AGG - chr4.3:8289928-8289947 MS.gene57416:CDS 30.0%
! ATTTGGATTTTCTTTCATGG+AGG - chr4.3:8289719-8289738 MS.gene57416:CDS 30.0%
! GAAATTCCAACTTTTGATGT+TGG - chr4.3:8289760-8289779 MS.gene57416:CDS 30.0%
!! GTGATTTGGATTTTCTTTCA+TGG - chr4.3:8289716-8289735 MS.gene57416:CDS 30.0%
!! TGATGTTTTTGATGGAACAT+GGG - chr4.3:8289609-8289628 MS.gene57416:CDS 30.0%
!! TTGATTTGTATGTTGATGAC+TGG - chr4.3:8289859-8289878 MS.gene57416:CDS 30.0%
!!! AGTAAAAGGGTTGTTTTTGT+TGG - chr4.3:8289805-8289824 MS.gene57416:CDS 30.0%
!!! CATGCTTTTTTTAATGGACA+AGG - chr4.3:8289532-8289551 MS.gene57416:CDS 30.0%
AAACCAATTATCAACCGCTT+TGG - chr4.3:8289406-8289425 MS.gene57416:CDS 35.0%
ACCACCAATTGCTATAAAGA+AGG + chr4.3:8289482-8289501 None:intergenic 35.0%
AGAATGAGATCTTCTGTTGA+AGG + chr4.3:8289368-8289387 None:intergenic 35.0%
AGGAAATGGAAGAAGTGATT+TGG - chr4.3:8289702-8289721 MS.gene57416:CDS 35.0%
CACTCAGTTGCATTATACAA+AGG + chr4.3:8289652-8289671 None:intergenic 35.0%
GGAAATGTTGAGGAGTAAAA+GGG - chr4.3:8289792-8289811 MS.gene57416:CDS 35.0%
GTTGGAATTTCACAACTCTT+AGG + chr4.3:8289751-8289770 None:intergenic 35.0%
TCAAAGAAACACATCCAAAG+CGG + chr4.3:8289423-8289442 None:intergenic 35.0%
TCCTTCTTTATAGCAATTGG+TGG - chr4.3:8289478-8289497 MS.gene57416:CDS 35.0%
TGGAAATGTTGAGGAGTAAA+AGG - chr4.3:8289791-8289810 MS.gene57416:CDS 35.0%
TTCTTTATAGCAATTGGTGG+TGG - chr4.3:8289481-8289500 MS.gene57416:CDS 35.0%
!! AAAGCGGTTGATAATTGGTT+TGG + chr4.3:8289407-8289426 None:intergenic 35.0%
!! AAGCGGTTGATAATTGGTTT+GGG + chr4.3:8289406-8289425 None:intergenic 35.0%
!! GGATTAGGTTTTTAGGAGTT+AGG - chr4.3:8289935-8289954 MS.gene57416:CDS 35.0%
!! GTGATGTTTTTGATGGAACA+TGG - chr4.3:8289608-8289627 MS.gene57416:CDS 35.0%
!!! TTTTGATGTTGGTGCTGTTT+TGG - chr4.3:8289771-8289790 MS.gene57416:CDS 35.0%
ACAGCACCAACATCAAAAGT+TGG + chr4.3:8289769-8289788 None:intergenic 40.0%
AGATCTCATTCTCAACCTCT+TGG - chr4.3:8289376-8289395 MS.gene57416:CDS 40.0%
ATTCAATACTGGTCACTGGT+GGG - chr4.3:8290116-8290135 MS.gene57416:CDS 40.0%
TACGTGTGGAAAAGCTTAGA+TGG + chr4.3:8290144-8290163 None:intergenic 40.0%
TATTCAATACTGGTCACTGG+TGG - chr4.3:8290115-8290134 MS.gene57416:CDS 40.0%
! GAGTGTCCTTTTGTTGAACA+AGG - chr4.3:8289667-8289686 MS.gene57416:CDS 40.0%
! GCTTTGGATGTGTTTCTTTG+AGG - chr4.3:8289422-8289441 MS.gene57416:CDS 40.0%
! TGGATTTTCTTTCATGGAGG+TGG - chr4.3:8289722-8289741 MS.gene57416:CDS 40.0%
!! AGTGTTGATTTAACCCTCCT+TGG + chr4.3:8290039-8290058 None:intergenic 40.0%
!! CATCCAAAGCGGTTGATAAT+TGG + chr4.3:8289412-8289431 None:intergenic 40.0%
!! TTGTATGTTGATGACTGGTG+TGG - chr4.3:8289864-8289883 MS.gene57416:CDS 40.0%
!!! GTGCTGTTTTGGAAATGTTG+AGG - chr4.3:8289782-8289801 MS.gene57416:CDS 40.0%
GGAACATGGGTTCAAGTATC+TGG - chr4.3:8289622-8289641 MS.gene57416:CDS 45.0%
TCATGAACATGCACCAAGGA+GGG - chr4.3:8290023-8290042 MS.gene57416:CDS 45.0%
!! ATTGGTTTGGGACTACCAAG+AGG + chr4.3:8289394-8289413 None:intergenic 45.0%
!! TATGTTGATGACTGGTGTGG+AGG - chr4.3:8289867-8289886 MS.gene57416:CDS 45.0%
CTCATGAACATGCACCAAGG+AGG - chr4.3:8290022-8290041 MS.gene57416:CDS 50.0%
TTTCTTGGTACAGCAGCGTC+CGG - chr4.3:8289999-8290018 MS.gene57416:CDS 50.0%
! CTTGGTGCATGTTCATGAGC+CGG + chr4.3:8290021-8290040 None:intergenic 50.0%
CGGCTCATGAACATGCACCA+AGG - chr4.3:8290019-8290038 MS.gene57416:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 8289334 8290164 8289334 ID=MS.gene57416
chr4.3 mRNA 8289334 8290164 8289334 ID=MS.gene57416.t1;Parent=MS.gene57416
chr4.3 exon 8289334 8290164 8289334 ID=MS.gene57416.t1.exon1;Parent=MS.gene57416.t1
chr4.3 CDS 8289334 8290164 8289334 ID=cds.MS.gene57416.t1;Parent=MS.gene57416.t1
Gene Sequence

>MS.gene57416

ATGAGTGGTTCACATTTGAATAAAAGCATTTCCTTCAACAGAAGATCTCATTCTCAACCTCTTGGTAGTCCCAAACCAATTATCAACCGCTTTGGATGTGTTTCTTTGAGGTTTCAAGTTCTTGTTATCATTGCTTCTGTTTTTTCCTTCTTTATAGCAATTGGTGGTGGTTACATCTATGTTCTTCCTAGTATCACACATGCTTTTTTTAATGGACAAGGTTTCTTTTCTGATCATAACAATAACAATAACAATAATTCGTTGTTGAGAAAATGTGATGTTTTTGATGGAACATGGGTTCAAGTATCTGGTTATCCTTTGTATAATGCAACTGAGTGTCCTTTTGTTGAACAAGGATTTGATTGTTTAGGAAATGGAAGAAGTGATTTGGATTTTCTTTCATGGAGGTGGAAACCTAAGAGTTGTGAAATTCCAACTTTTGATGTTGGTGCTGTTTTGGAAATGTTGAGGAGTAAAAGGGTTGTTTTTGTTGGTGATTCAATGAGTAGAACTCAATGGGAGTCTTTGATTTGTATGTTGATGACTGGTGTGGAGGATAAGACGAGTGTTTATGAAGTGAATCAGAATCAGATTACAAAGAGGATTAGGTTTTTAGGAGTTAGGTTTAGTGATTTCAATTTTACAATTGAATTTTTTCGATCTGTTTTCTTGGTACAGCAGCGTCCGGCTCATGAACATGCACCAAGGAGGGTTAAATCAACACTTTTGTTAGACAAGTTAGATGATATAAGTCATCAATGGATTGATTCAGATATTCTTATATTCAATACTGGTCACTGGTGGGTGCCATCTAAGCTTTTCCACACGTAA
Protein sequence

>MS.gene57416.t1

MSGSHLNKSISFNRRSHSQPLGSPKPIINRFGCVSLRFQVLVIIASVFSFFIAIGGGYIYVLPSITHAFFNGQGFFSDHNNNNNNNSLLRKCDVFDGTWVQVSGYPLYNATECPFVEQGFDCLGNGRSDLDFLSWRWKPKSCEIPTFDVGAVLEMLRSKRVVFVGDSMSRTQWESLICMLMTGVEDKTSVYEVNQNQITKRIRFLGVRFSDFNFTIEFFRSVFLVQQRPAHEHAPRRVKSTLLLDKLDDISHQWIDSDILIFNTGHWWVPSKLFHT