Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57645.t1 | XP_013458483.1 | 98.1 | 263 | 5 | 0 | 1 | 263 | 203 | 465 | 8.60E-149 | 536.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57645.t1 | Q9LTS3 | 53.8 | 266 | 115 | 2 | 1 | 263 | 205 | 465 | 1.2e-82 | 307.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57645.t1 | A0A072URS8 | 98.1 | 263 | 5 | 0 | 1 | 263 | 203 | 465 | 6.2e-149 | 536.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050871 | MS.gene57645 | -0.805901 | 1.07E-49 | -1.69E-46 |
MS.gene05104 | MS.gene57645 | 0.806857 | 6.71E-50 | -1.69E-46 |
MS.gene051138 | MS.gene57645 | 0.813334 | 2.70E-51 | -1.69E-46 |
MS.gene051863 | MS.gene57645 | 0.931756 | 2.36E-94 | -1.69E-46 |
MS.gene053488 | MS.gene57645 | 0.805306 | 1.42E-49 | -1.69E-46 |
MS.gene054056 | MS.gene57645 | 0.809535 | 1.80E-50 | -1.69E-46 |
MS.gene056387 | MS.gene57645 | -0.804445 | 2.15E-49 | -1.69E-46 |
MS.gene058093 | MS.gene57645 | 0.811674 | 6.22E-51 | -1.69E-46 |
MS.gene058099 | MS.gene57645 | 0.839083 | 1.96E-57 | -1.69E-46 |
MS.gene058171 | MS.gene57645 | 0.803658 | 3.14E-49 | -1.69E-46 |
MS.gene058173 | MS.gene57645 | 0.802452 | 5.57E-49 | -1.69E-46 |
MS.gene058175 | MS.gene57645 | 0.812886 | 3.38E-51 | -1.69E-46 |
MS.gene059865 | MS.gene57645 | -0.803012 | 4.27E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 49 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAACTGGGTTTGATAATT+TGG | 0.172846 | 8.4:-8692612 | MS.gene57645:CDS |
CTTGGAGGTCTAGGCCAATT+TGG | 0.234892 | 8.4:-8693921 | MS.gene57645:CDS |
ATGCGAGGTTGATCAATTTC+TGG | 0.237168 | 8.4:+8693276 | None:intergenic |
TCAATGAGATTAAATGTTCT+TGG | 0.259196 | 8.4:+8693382 | None:intergenic |
TGATGTAGATTATGCCATAT+TGG | 0.273247 | 8.4:+8693238 | None:intergenic |
GAACATGTTACTTACCCTTT+TGG | 0.283606 | 8.4:+8693860 | None:intergenic |
ACTTACTTTGTTCGGTTCAT+TGG | 0.299489 | 8.4:+8692772 | None:intergenic |
TTGGAGGTCTAGGCCAATTT+GGG | 0.311083 | 8.4:-8693920 | MS.gene57645:CDS |
CCCGGGTTATAATCCCAAAT+TGG | 0.317668 | 8.4:+8693907 | None:intergenic |
TGGTTAGACCTATTTGTTCC+AGG | 0.317776 | 8.4:-8692880 | MS.gene57645:CDS |
ACGTAGAAAATTTCTTCATT+AGG | 0.319059 | 8.4:+8692650 | None:intergenic |
CACTAAGGGCACAAGGGCTT+TGG | 0.322463 | 8.4:-8692918 | MS.gene57645:CDS |
GATGTAGATTATGCCATATT+GGG | 0.334379 | 8.4:+8693239 | None:intergenic |
ACTTCCTTGGTAACCCAATA+TGG | 0.343635 | 8.4:-8693252 | MS.gene57645:CDS |
AATGCACCTAATTATGTAGA+AGG | 0.361571 | 8.4:-8693342 | MS.gene57645:CDS |
TACAGAATTGCAATATTTGT+TGG | 0.363574 | 8.4:+8692570 | None:intergenic |
CTTACTTTGTTCGGTTCATT+GGG | 0.402378 | 8.4:+8692773 | None:intergenic |
CTCTCAAGATCATGTTGATC+AGG | 0.409029 | 8.4:-8693187 | MS.gene57645:intron |
GAACATTTAATCTCATTGAA+TGG | 0.419334 | 8.4:-8693378 | MS.gene57645:CDS |
TATGCGGTTCTTGGAGGTCT+AGG | 0.420552 | 8.4:-8693930 | MS.gene57645:CDS |
ACTAAGGGCACAAGGGCTTT+GGG | 0.426367 | 8.4:-8692917 | MS.gene57645:CDS |
CTCTTGGACCTGCACCCAAA+AGG | 0.431378 | 8.4:-8693875 | MS.gene57645:CDS |
GTCCAAGAGCTATTCTTGCC+CGG | 0.443689 | 8.4:+8693889 | None:intergenic |
TTTGGGATATCCCACATCCT+TGG | 0.453084 | 8.4:-8692900 | MS.gene57645:CDS |
AATTCAGACATTCTAGATCC+TGG | 0.456400 | 8.4:+8692862 | None:intergenic |
AGAAGTCGTTGTAAAGTAAA+CGG | 0.480233 | 8.4:+8693421 | None:intergenic |
ATTTAATGAAGGTGTGTTCA+AGG | 0.481817 | 8.4:-8692842 | MS.gene57645:CDS |
TTCTAGATCCTGGAACAAAT+AGG | 0.484678 | 8.4:+8692872 | None:intergenic |
TTAATTTCTTGTAGGTAAAG+TGG | 0.485135 | 8.4:-8693446 | MS.gene57645:intron |
TCAACCTCGCATAACTTCCT+TGG | 0.491369 | 8.4:-8693265 | MS.gene57645:CDS |
TCTTGGACCTGCACCCAAAA+GGG | 0.495846 | 8.4:-8693874 | MS.gene57645:intron |
AATAGGTCTAACCAAGGATG+TGG | 0.503374 | 8.4:+8692889 | None:intergenic |
ACCCGGGCAAGAATAGCTCT+TGG | 0.507789 | 8.4:-8693891 | MS.gene57645:CDS |
GCCAATTTGGGATTATAACC+CGG | 0.514228 | 8.4:-8693908 | MS.gene57645:CDS |
TCCAAGAGCTATTCTTGCCC+GGG | 0.517850 | 8.4:+8693890 | None:intergenic |
AACTGGGTTTGATAATTTGG+AGG | 0.517975 | 8.4:-8692609 | MS.gene57645:CDS |
CCAATTTGGGATTATAACCC+GGG | 0.522205 | 8.4:-8693907 | MS.gene57645:CDS |
TTTCATAGGGAAAGGAGACT+TGG | 0.523319 | 8.4:-8693988 | None:intergenic |
AGAATGTCTGAATTTAATGA+AGG | 0.553370 | 8.4:-8692853 | MS.gene57645:CDS |
CTTAAACAAAACATTACAGC+AGG | 0.556213 | 8.4:-8692811 | MS.gene57645:CDS |
TTTAATGAAGGTGTGTTCAA+GGG | 0.557994 | 8.4:-8692841 | MS.gene57645:CDS |
TACTGATGAGCTAACACTAA+GGG | 0.595369 | 8.4:-8692932 | MS.gene57645:CDS |
ATACTGATGAGCTAACACTA+AGG | 0.611848 | 8.4:-8692933 | MS.gene57645:CDS |
GAGCTAACACTAAGGGCACA+AGG | 0.614915 | 8.4:-8692925 | MS.gene57645:CDS |
TATGCCATATTGGGTTACCA+AGG | 0.624328 | 8.4:+8693248 | None:intergenic |
AGCTAACACTAAGGGCACAA+GGG | 0.649584 | 8.4:-8692924 | MS.gene57645:CDS |
ATAGGTCTAACCAAGGATGT+GGG | 0.663453 | 8.4:+8692890 | None:intergenic |
GGAACAAATAGGTCTAACCA+AGG | 0.693806 | 8.4:+8692883 | None:intergenic |
GTTACCAAGGAAGTTATGCG+AGG | 0.707702 | 8.4:+8693261 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGAATTTACAAAAATTTA+AGG | + | chr8.4:8692856-8692875 | None:intergenic | 10.0% |
!! | GTTTAATTAGTAATTTAATT+TGG | + | chr8.4:8693077-8693096 | None:intergenic | 10.0% |
!!! | TTGTAAATTCTTTTATTATA+GGG | - | chr8.4:8692863-8692882 | MS.gene57645:CDS | 10.0% |
!!! | TTTGTAAATTCTTTTATTAT+AGG | - | chr8.4:8692862-8692881 | MS.gene57645:CDS | 10.0% |
!! | AATATATTTACTTATTCGTA+TGG | - | chr8.4:8692723-8692742 | MS.gene57645:intron | 15.0% |
!! | TATACTTTGAATTAATTCAT+AGG | - | chr8.4:8693853-8693872 | MS.gene57645:intron | 15.0% |
!! | AAAAAACCTTCTACATAATT+AGG | + | chr8.4:8693220-8693239 | None:intergenic | 20.0% |
!! | CAAATGTAGAAATAATGTAT+TGG | + | chr8.4:8693006-8693025 | None:intergenic | 20.0% |
!! | TTGTTTGATTAATTTCTTGT+AGG | - | chr8.4:8693099-8693118 | MS.gene57645:intron | 20.0% |
!!! | AGTAATTTAATTTGGGATAA+AGG | + | chr8.4:8693069-8693088 | None:intergenic | 20.0% |
!!! | CAATACATTATTTCTACATT+TGG | - | chr8.4:8693004-8693023 | MS.gene57645:CDS | 20.0% |
!!! | CTTTTTCGAATTTAAAAGTA+GGG | + | chr8.4:8693567-8693586 | None:intergenic | 20.0% |
!!! | GTAATTTAATTTGGGATAAA+GGG | + | chr8.4:8693068-8693087 | None:intergenic | 20.0% |
!!! | TCTTTTTCGAATTTAAAAGT+AGG | + | chr8.4:8693568-8693587 | None:intergenic | 20.0% |
!!! | TTTTCAAAACTTACTTTGTT+CGG | + | chr8.4:8693792-8693811 | None:intergenic | 20.0% |
! | AATTGAATGCACAAAGTTTA+AGG | + | chr8.4:8692946-8692965 | None:intergenic | 25.0% |
! | ACGTAGAAAATTTCTTCATT+AGG | + | chr8.4:8693906-8693925 | None:intergenic | 25.0% |
! | ACTTTGAATTAATTCATAGG+TGG | - | chr8.4:8693856-8693875 | MS.gene57645:intron | 25.0% |
! | AGAATGTCTGAATTTAATGA+AGG | - | chr8.4:8693700-8693719 | MS.gene57645:intron | 25.0% |
! | ATTGAATGCACAAAGTTTAA+GGG | + | chr8.4:8692945-8692964 | None:intergenic | 25.0% |
! | CTTTGAATTAATTCATAGGT+GGG | - | chr8.4:8693857-8693876 | MS.gene57645:intron | 25.0% |
! | GAACATTTAATCTCATTGAA+TGG | - | chr8.4:8693175-8693194 | MS.gene57645:intron | 25.0% |
! | TCAATGAGATTAAATGTTCT+TGG | + | chr8.4:8693174-8693193 | None:intergenic | 25.0% |
! | TTAATTTCTTGTAGGTAAAG+TGG | - | chr8.4:8693107-8693126 | MS.gene57645:intron | 25.0% |
!! | GAAATTGAAATTTTGCTTCA+GGG | - | chr8.4:8693529-8693548 | MS.gene57645:intron | 25.0% |
!! | TTGATCAATTTCTGGAAAAA+AGG | + | chr8.4:8693272-8693291 | None:intergenic | 25.0% |
!!! | GAACTCAGAATTATTTTATG+CGG | - | chr8.4:8692607-8692626 | MS.gene57645:CDS | 25.0% |
!!! | TATCGTTTTGTTTCTTGAAT+AGG | - | chr8.4:8693507-8693526 | MS.gene57645:intron | 25.0% |
AATGCACCTAATTATGTAGA+AGG | - | chr8.4:8693211-8693230 | MS.gene57645:CDS | 30.0% | |
ACCAACAAATATTGCAATTC+TGG | - | chr8.4:8693982-8694001 | MS.gene57645:CDS | 30.0% | |
AGAAGTCGTTGTAAAGTAAA+CGG | + | chr8.4:8693135-8693154 | None:intergenic | 30.0% | |
CTTAAACAAAACATTACAGC+AGG | - | chr8.4:8693742-8693761 | MS.gene57645:intron | 30.0% | |
GATGTAGATTATGCCATATT+GGG | + | chr8.4:8693317-8693336 | None:intergenic | 30.0% | |
TGAAAATAGCATGACTACTT+TGG | + | chr8.4:8693445-8693464 | None:intergenic | 30.0% | |
TGATGTAGATTATGCCATAT+TGG | + | chr8.4:8693318-8693337 | None:intergenic | 30.0% | |
TTTCTAAACTTGTGCCTTAA+GGG | - | chr8.4:8693027-8693046 | MS.gene57645:CDS | 30.0% | |
! | AGAGTTTTCGTCGTAATATT+TGG | + | chr8.4:8693350-8693369 | None:intergenic | 30.0% |
! | ATTTAATGAAGGTGTGTTCA+AGG | - | chr8.4:8693711-8693730 | MS.gene57645:intron | 30.0% |
! | CAATTTCTGGAAAAAAGGAT+AGG | + | chr8.4:8693267-8693286 | None:intergenic | 30.0% |
! | GGAAATTGAAATTTTGCTTC+AGG | - | chr8.4:8693528-8693547 | MS.gene57645:intron | 30.0% |
! | TGAAGAAATTTTCTACGTTG+TGG | - | chr8.4:8693908-8693927 | MS.gene57645:CDS | 30.0% |
! | TTTAATGAAGGTGTGTTCAA+GGG | - | chr8.4:8693712-8693731 | MS.gene57645:intron | 30.0% |
!! | AACATGTTACTTACCCTTTT+GGG | + | chr8.4:8692695-8692714 | None:intergenic | 30.0% |
!! | GAATTATTTTATGCGGTTCT+TGG | - | chr8.4:8692614-8692633 | MS.gene57645:CDS | 30.0% |
!!! | CTGCTGTAATGTTTTGTTTA+AGG | + | chr8.4:8693744-8693763 | None:intergenic | 30.0% |
AATTCAGACATTCTAGATCC+TGG | + | chr8.4:8693694-8693713 | None:intergenic | 35.0% | |
ACTTACTTTGTTCGGTTCAT+TGG | + | chr8.4:8693784-8693803 | None:intergenic | 35.0% | |
ATACTGATGAGCTAACACTA+AGG | - | chr8.4:8693620-8693639 | MS.gene57645:intron | 35.0% | |
ATTTCTTAACATGTGCCCTA+AGG | + | chr8.4:8692905-8692924 | None:intergenic | 35.0% | |
CTTACTTTGTTCGGTTCATT+GGG | + | chr8.4:8693783-8693802 | None:intergenic | 35.0% | |
GTTTCTAAACTTGTGCCTTA+AGG | - | chr8.4:8693026-8693045 | MS.gene57645:CDS | 35.0% | |
TACTGATGAGCTAACACTAA+GGG | - | chr8.4:8693621-8693640 | MS.gene57645:intron | 35.0% | |
TTCTAGATCCTGGAACAAAT+AGG | + | chr8.4:8693684-8693703 | None:intergenic | 35.0% | |
TTTCTTAACATGTGCCCTAA+GGG | + | chr8.4:8692904-8692923 | None:intergenic | 35.0% | |
! | AACTGGGTTTGATAATTTGG+AGG | - | chr8.4:8693944-8693963 | MS.gene57645:CDS | 35.0% |
! | CTTCATATGACGAGTCTTTT+TGG | + | chr8.4:8693419-8693438 | None:intergenic | 35.0% |
! | TGCAACTGGGTTTGATAATT+TGG | - | chr8.4:8693941-8693960 | MS.gene57645:CDS | 35.0% |
!! | GAACATGTTACTTACCCTTT+TGG | + | chr8.4:8692696-8692715 | None:intergenic | 35.0% |
!! | TTATTTTATGCGGTTCTTGG+AGG | - | chr8.4:8692617-8692636 | MS.gene57645:CDS | 35.0% |
AAAAAGGATAGGTCTAGTGG+TGG | + | chr8.4:8693256-8693275 | None:intergenic | 40.0% | |
AATAGGTCTAACCAAGGATG+TGG | + | chr8.4:8693667-8693686 | None:intergenic | 40.0% | |
AATGTTAACGTGTGCCCTTA+AGG | + | chr8.4:8693044-8693063 | None:intergenic | 40.0% | |
ATAGGTCTAACCAAGGATGT+GGG | + | chr8.4:8693666-8693685 | None:intergenic | 40.0% | |
CTCTCAAGATCATGTTGATC+AGG | - | chr8.4:8693366-8693385 | MS.gene57645:CDS | 40.0% | |
GGAAAAAAGGATAGGTCTAG+TGG | + | chr8.4:8693259-8693278 | None:intergenic | 40.0% | |
GGAACAAATAGGTCTAACCA+AGG | + | chr8.4:8693673-8693692 | None:intergenic | 40.0% | |
TATGCCATATTGGGTTACCA+AGG | + | chr8.4:8693308-8693327 | None:intergenic | 40.0% | |
TGGTTAGACCTATTTGTTCC+AGG | - | chr8.4:8693673-8693692 | MS.gene57645:intron | 40.0% | |
! | AACGACTTCTCTGCATTTTC+TGG | - | chr8.4:8693145-8693164 | MS.gene57645:intron | 40.0% |
! | ACTTCCTTGGTAACCCAATA+TGG | - | chr8.4:8693301-8693320 | MS.gene57645:CDS | 40.0% |
! | AGTGTTAACTTGAGCCCTTA+GGG | - | chr8.4:8692887-8692906 | MS.gene57645:CDS | 40.0% |
! | ATGCGAGGTTGATCAATTTC+TGG | + | chr8.4:8693280-8693299 | None:intergenic | 40.0% |
! | CCAATTTGGGATTATAACCC+GGG | - | chr8.4:8692646-8692665 | MS.gene57645:CDS | 40.0% |
! | GCCAATTTGGGATTATAACC+CGG | - | chr8.4:8692645-8692664 | MS.gene57645:CDS | 40.0% |
! | TAGTGTTAACTTGAGCCCTT+AGG | - | chr8.4:8692886-8692905 | MS.gene57645:CDS | 40.0% |
!!! | TGGATTTTTTGCGTGCAACT+GGG | - | chr8.4:8693928-8693947 | MS.gene57645:CDS | 40.0% |
CCCGGGTTATAATCCCAAAT+TGG | + | chr8.4:8692649-8692668 | None:intergenic | 45.0% | |
GTTACCAAGGAAGTTATGCG+AGG | + | chr8.4:8693295-8693314 | None:intergenic | 45.0% | |
TCAACCTCGCATAACTTCCT+TGG | - | chr8.4:8693288-8693307 | MS.gene57645:CDS | 45.0% | |
TTGGAGGTCTAGGCCAATTT+GGG | - | chr8.4:8692633-8692652 | MS.gene57645:CDS | 45.0% | |
! | AGCTAACACTAAGGGCACAA+GGG | - | chr8.4:8693629-8693648 | MS.gene57645:intron | 45.0% |
! | TTTGGGATATCCCACATCCT+TGG | - | chr8.4:8693653-8693672 | MS.gene57645:intron | 45.0% |
!! | TTACTTACCCTTTTGGGTGC+AGG | + | chr8.4:8692689-8692708 | None:intergenic | 45.0% |
!!! | GTGGATTTTTTGCGTGCAAC+TGG | - | chr8.4:8693927-8693946 | MS.gene57645:CDS | 45.0% |
!!! | TTTAATTAGTAATTTAATTT+GGG | + | chr8.4:8693076-8693095 | None:intergenic | 5.0% |
CTTGGAGGTCTAGGCCAATT+TGG | - | chr8.4:8692632-8692651 | MS.gene57645:CDS | 50.0% | |
GTCCAAGAGCTATTCTTGCC+CGG | + | chr8.4:8692667-8692686 | None:intergenic | 50.0% | |
TATGCGGTTCTTGGAGGTCT+AGG | - | chr8.4:8692623-8692642 | MS.gene57645:CDS | 50.0% | |
TCCAAGAGCTATTCTTGCCC+GGG | + | chr8.4:8692666-8692685 | None:intergenic | 50.0% | |
TCTTGGACCTGCACCCAAAA+GGG | - | chr8.4:8692679-8692698 | MS.gene57645:CDS | 50.0% | |
! | ACTAAGGGCACAAGGGCTTT+GGG | - | chr8.4:8693636-8693655 | MS.gene57645:intron | 50.0% |
! | GAGCTAACACTAAGGGCACA+AGG | - | chr8.4:8693628-8693647 | MS.gene57645:intron | 50.0% |
ACCCGGGCAAGAATAGCTCT+TGG | - | chr8.4:8692662-8692681 | MS.gene57645:CDS | 55.0% | |
CTCTTGGACCTGCACCCAAA+AGG | - | chr8.4:8692678-8692697 | MS.gene57645:CDS | 55.0% | |
! | CACTAAGGGCACAAGGGCTT+TGG | - | chr8.4:8693635-8693654 | MS.gene57645:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 8692573 | 8694002 | 8692573 | ID=MS.gene57645 |
chr8.4 | mRNA | 8692573 | 8694002 | 8692573 | ID=MS.gene57645.t1;Parent=MS.gene57645 |
chr8.4 | exon | 8693875 | 8694002 | 8693875 | ID=MS.gene57645.t1.exon1;Parent=MS.gene57645.t1 |
chr8.4 | CDS | 8693875 | 8694002 | 8693875 | ID=cds.MS.gene57645.t1;Parent=MS.gene57645.t1 |
chr8.4 | exon | 8693188 | 8693454 | 8693188 | ID=MS.gene57645.t1.exon2;Parent=MS.gene57645.t1 |
chr8.4 | CDS | 8693188 | 8693454 | 8693188 | ID=cds.MS.gene57645.t1;Parent=MS.gene57645.t1 |
chr8.4 | exon | 8692778 | 8693046 | 8692778 | ID=MS.gene57645.t1.exon3;Parent=MS.gene57645.t1 |
chr8.4 | CDS | 8692778 | 8693046 | 8692778 | ID=cds.MS.gene57645.t1;Parent=MS.gene57645.t1 |
chr8.4 | exon | 8692573 | 8692700 | 8692573 | ID=MS.gene57645.t1.exon4;Parent=MS.gene57645.t1 |
chr8.4 | CDS | 8692573 | 8692700 | 8692573 | ID=cds.MS.gene57645.t1;Parent=MS.gene57645.t1 |
Gene Sequence |
Protein sequence |