AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053488


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053488.t1 MTR_4g086330 94.554 202 6 1 1 202 1 197 9.35e-142 393
MS.gene053488.t1 MTR_4g086320 95.652 115 5 0 64 178 46 160 6.61e-80 235
MS.gene053488.t1 MTR_8g104870 49.057 159 74 1 39 190 15 173 1.03e-48 157
MS.gene053488.t1 MTR_5g017650 54.762 126 54 1 68 190 51 176 1.61e-45 149
MS.gene053488.t1 MTR_8g104890 50.000 166 81 1 39 202 4 169 2.38e-45 148
MS.gene053488.t1 MTR_6g084940 47.482 139 71 2 64 202 13 149 1.19e-35 122
MS.gene053488.t1 MTR_1g075550 57.143 112 47 1 68 179 11 121 8.22e-32 112
MS.gene053488.t1 MTR_8g104830 42.143 140 77 3 67 202 7 146 8.54e-30 107
MS.gene053488.t1 MTR_2g101660 40.458 131 78 0 69 199 33 163 5.03e-29 106
MS.gene053488.t1 MTR_5g008240 33.333 210 104 8 2 196 55 243 1.08e-25 100
MS.gene053488.t1 MTR_5g008240 33.175 211 105 8 1 196 30 219 1.74e-25 99.0
MS.gene053488.t1 MTR_5g008240 38.356 146 69 5 66 196 38 177 2.10e-25 97.8
MS.gene053488.t1 MTR_2g101660 40.870 115 68 0 85 199 1 115 1.35e-24 93.6
MS.gene053488.t1 MTR_5g008240 37.795 127 58 5 85 196 39 159 1.22e-17 77.0
MS.gene053488.t1 MTR_7g044840 30.370 135 66 3 64 170 55 189 2.16e-14 69.7
MS.gene053488.t1 MTR_0172s0050 31.056 161 69 5 46 174 50 200 1.63e-12 64.7
MS.gene053488.t1 MTR_8g075150 30.357 168 104 5 9 172 246 404 2.89e-12 65.1
MS.gene053488.t1 MTR_3g408350 28.662 157 73 3 44 171 44 190 3.89e-12 63.5
MS.gene053488.t1 MTR_5g022670 35.043 117 69 3 59 172 285 397 6.45e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053488.t1 AT1G14870 54.348 138 60 2 68 202 15 152 1.04e-51 164
MS.gene053488.t1 AT5G35525 55.072 138 59 2 68 202 15 152 1.63e-50 160
MS.gene053488.t1 AT3G18470 51.493 134 60 1 67 200 3 131 1.55e-44 145
MS.gene053488.t1 AT1G14870 56.364 110 48 0 69 178 16 125 2.36e-43 142
MS.gene053488.t1 AT1G14880 48.551 138 68 2 68 202 14 151 2.94e-43 142
MS.gene053488.t1 AT1G49030 43.902 164 82 2 36 196 62 218 4.00e-42 142
MS.gene053488.t1 AT3G18460 48.819 127 62 2 69 195 54 177 1.09e-40 137
MS.gene053488.t1 AT1G68610 51.678 149 66 3 60 202 10 158 3.22e-39 132
MS.gene053488.t1 AT3G18450 42.636 129 73 1 67 195 50 177 7.13e-36 124
MS.gene053488.t1 AT1G68630 45.205 146 73 3 54 199 19 157 1.04e-33 118
MS.gene053488.t1 AT1G52200 38.961 154 86 2 45 191 30 182 9.80e-30 108
MS.gene053488.t1 AT1G58320 47.445 137 66 5 68 202 16 148 2.88e-29 106
MS.gene053488.t1 AT1G52200 40.845 142 81 2 45 186 30 168 7.51e-28 103
MS.gene053488.t1 AT2G40935 36.905 168 83 5 22 171 2 164 2.20e-24 95.1
MS.gene053488.t1 AT2G40935 36.905 168 83 5 22 171 2 164 2.20e-24 95.1
MS.gene053488.t1 AT2G40935 36.905 168 83 5 22 171 2 164 2.20e-24 95.1
MS.gene053488.t1 AT2G40935 36.905 168 83 5 22 171 2 164 2.20e-24 95.1
MS.gene053488.t1 AT2G40935 36.905 168 83 5 22 171 2 164 2.20e-24 95.1
MS.gene053488.t1 AT2G40935 33.929 168 77 6 22 171 2 153 3.63e-17 75.9
MS.gene053488.t1 AT2G45010 32.143 140 66 2 64 174 11 150 1.04e-16 75.1
MS.gene053488.t1 AT2G45010 32.143 140 66 2 64 174 57 196 1.12e-16 75.9
MS.gene053488.t1 AT2G40935 36.000 150 68 6 40 171 1 140 8.38e-16 72.0
MS.gene053488.t1 AT2G40935 36.000 150 68 6 40 171 1 140 8.38e-16 72.0
MS.gene053488.t1 AT2G40935 36.000 150 68 6 40 171 1 140 8.38e-16 72.0
MS.gene053488.t1 AT5G51400 29.341 167 80 4 64 201 57 214 9.67e-15 70.9

Find 56 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTGATGGAACAATTTA+TGG 0.162988 4.3:+26583691 MS.gene053488:CDS
TTCTGCCCATGTGTTACTTT+TGG 0.260194 4.3:+26583249 MS.gene053488:CDS
CTTGAACTGGTGCTGATATA+TGG 0.295600 4.3:-26583055 None:intergenic
TCTTGGGATGCCCCTTGAAC+TGG 0.352985 4.3:-26583068 None:intergenic
ACATGATCTGTTTCACTTAC+GGG 0.365548 4.3:-26582926 None:intergenic
GTTGACCAGTGATGTGTTCT+TGG 0.377366 4.3:-26583085 None:intergenic
TGAAACTTGTGCTCTTTGTC+AGG 0.408519 4.3:+26583834 MS.gene053488:CDS
CTTGCCAGAGGCACCTTGTA+TGG 0.422756 4.3:+26583789 MS.gene053488:CDS
ACACGATCCTTACAGATTCC+AGG 0.423026 4.3:-26583133 None:intergenic
AGAACACATCACTGGTCAAC+TGG 0.424557 4.3:+26583088 MS.gene053488:CDS
TGCCGTTGTCTTGATGATCC+TGG 0.428665 4.3:+26583115 MS.gene053488:CDS
AACAATTTATGGGGCGCTAC+TGG 0.429042 4.3:+26583702 MS.gene053488:CDS
TACATGATCTGTTTCACTTA+CGG 0.430083 4.3:-26582927 None:intergenic
CTGATATATGGAGGAGCATA+AGG 0.431906 4.3:-26583043 None:intergenic
TTGACCAGTGATGTGTTCTT+GGG 0.472581 4.3:-26583084 None:intergenic
GGTGGTGCTAGCGCAACTCC+TGG 0.473707 4.3:-26584801 None:intergenic
GGGGCGCTACTGGCTGTGTC+GGG 0.479808 4.3:+26583712 MS.gene053488:CDS
TGGGGCGCTACTGGCTGTGT+CGG 0.483383 4.3:+26583711 MS.gene053488:CDS
CTTGTCATAGGTGAAATCAT+TGG 0.483757 4.3:-26584822 None:intergenic
CAGTCCATACAAGGTGCCTC+TGG 0.489012 4.3:-26583793 None:intergenic
GGGAGGATACATATTGTTGT+TGG 0.490981 4.3:-26582906 None:intergenic
GTCCTACAAATGCCAAGTTA+TGG 0.492297 4.3:+26583004 MS.gene053488:CDS
TGCCATAACTTGGCATTTGT+AGG 0.492803 4.3:-26583006 None:intergenic
CTTGTGATGGAACAATTTAT+GGG 0.493346 4.3:+26583692 MS.gene053488:CDS
CATATATCAGCACCAGTTCA+AGG 0.493929 4.3:+26583056 MS.gene053488:CDS
GACACTGGCATGCCATAACT+TGG 0.500092 4.3:-26583016 None:intergenic
AGGATACATATTGTTGTTGG+TGG 0.512336 4.3:-26582903 None:intergenic
GGACATAGCCTTGACCTTGA+GGG 0.520075 4.3:-26582985 None:intergenic
GGAGCATAAGGTTGTGACAC+TGG 0.542568 4.3:-26583031 None:intergenic
TGGCCTCTGTCTTTCCACGT+TGG 0.547801 4.3:-26584781 None:intergenic
TGAACTAAGCAGTCCATACA+AGG 0.555249 4.3:-26583802 None:intergenic
TATGCAGATCATAGTAGTCA+TGG 0.562595 4.3:+26582950 MS.gene053488:CDS
ATATATCAGCACCAGTTCAA+GGG 0.567137 4.3:+26583057 MS.gene053488:CDS
GTTATTATCGCTCAAAACTG+AGG 0.570843 4.3:+26583755 MS.gene053488:CDS
AACGTGGAAAGACAGAGGCC+AGG 0.580413 4.3:+26584783 MS.gene053488:CDS
AGGACATAGCCTTGACCTTG+AGG 0.581870 4.3:-26582986 None:intergenic
GACATAGCCTTGACCTTGAG+GGG 0.583468 4.3:-26582984 None:intergenic
TATGCAGCTTGCACTTGTGA+TGG 0.596135 4.3:+26583679 MS.gene053488:intron
ATCAATCCAAAAGTAACACA+TGG 0.609342 4.3:-26583255 None:intergenic
GTCATAGGTGAAATCATTGG+TGG 0.613790 4.3:-26584819 None:intergenic
GCATCCCAAGAACACATCAC+TGG 0.621240 4.3:+26583080 MS.gene053488:CDS
TATATCAGCACCAGTTCAAG+GGG 0.623123 4.3:+26583058 MS.gene053488:CDS
GATCATAGTAGTCATGGCCA+TGG 0.626268 4.3:+26582956 MS.gene053488:CDS
TTATTATCGCTCAAAACTGA+GGG 0.630443 4.3:+26583756 MS.gene053488:CDS
CGTGGATATGACATGAGCAT+AGG 0.632539 4.3:+26583877 MS.gene053488:CDS
CTATGCTCATGTCATATCCA+CGG 0.633181 4.3:-26583876 None:intergenic
TTGTGATGGAACAATTTATG+GGG 0.659307 4.3:+26583693 MS.gene053488:CDS
TTCCAGGATCATCAAGACAA+CGG 0.663060 4.3:-26583117 None:intergenic
TGATCTGTTTCACTTACGGG+AGG 0.664833 4.3:-26582923 None:intergenic
ATAGCAGAGATAGTAGACAA+AGG 0.671471 4.3:+26583276 MS.gene053488:CDS
TATAGGTTGGGATGCCAACG+TGG 0.679210 4.3:+26584767 MS.gene053488:intron
ACATAGCCTTGACCTTGAGG+GGG 0.690202 4.3:-26582983 None:intergenic
TCAATCCAAAAGTAACACAT+GGG 0.696087 4.3:-26583254 None:intergenic
ATGCCAACGTGGAAAGACAG+AGG 0.696902 4.3:+26584778 MS.gene053488:CDS
GAACTGGTGCTGATATATGG+AGG 0.713639 4.3:-26583052 None:intergenic
GGCACAATATGACTTGCCAG+AGG 0.740534 4.3:+26583777 MS.gene053488:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATGAAATTAAGTTAA+GGG + chr4.3:26583568-26583587 MS.gene053488:intron 10.0%
!! TTAATATACTAAATTAAACT+TGG + chr4.3:26583928-26583947 MS.gene053488:intron 10.0%
!!! TTTAAAACACATATATATTA+TGG + chr4.3:26583179-26583198 MS.gene053488:intron 10.0%
!! CATTAAATGAAATTAAGTTA+AGG + chr4.3:26583567-26583586 MS.gene053488:intron 15.0%
!! TAGAAAAATCTATTACAATA+AGG + chr4.3:26584469-26584488 MS.gene053488:intron 15.0%
!! TTAAATGAAATTAAGTTAAG+GGG + chr4.3:26583569-26583588 MS.gene053488:intron 15.0%
!!! AAAGCTTTTACATAAAATAT+AGG + chr4.3:26583314-26583333 MS.gene053488:intron 15.0%
!!! ATAAGATTTTTATCTTAGTA+AGG - chr4.3:26584499-26584518 None:intergenic 15.0%
!!! CATTATTATTTATCATGTTT+TGG + chr4.3:26583648-26583667 MS.gene053488:intron 15.0%
!!! CATTTTATTTTTCTATTTGT+TGG - chr4.3:26584414-26584433 None:intergenic 15.0%
!!! CTTAATTTCATTTAATGTTT+TGG - chr4.3:26583564-26583583 None:intergenic 15.0%
!!! TATATATGTGTTTTAAAGAA+AGG - chr4.3:26583176-26583195 None:intergenic 15.0%
!!! TTTTTCTTTTCTAATTGATA+AGG + chr4.3:26583213-26583232 MS.gene053488:intron 15.0%
!! AAATGTTGGATATATAATAG+AGG + chr4.3:26584062-26584081 MS.gene053488:intron 20.0%
!! AAGTATTTGAAGAAAGAATT+AGG - chr4.3:26583905-26583924 None:intergenic 20.0%
!! ATTAAGAAAATAGAGATTCT+TGG - chr4.3:26584640-26584659 None:intergenic 20.0%
!! TTAAGAAAATAGAGATTCTT+GGG - chr4.3:26584639-26584658 None:intergenic 20.0%
!!! AGTTTTTTCTCATGTAATTT+TGG - chr4.3:26583535-26583554 None:intergenic 20.0%
!!! ATCTTTTTTTCATGTCATTT+TGG + chr4.3:26583391-26583410 MS.gene053488:intron 20.0%
!!! GTTTCTAACTTAAATTTTTG+AGG + chr4.3:26584682-26584701 MS.gene053488:intron 20.0%
!!! GTTTTTTCTCATGTAATTTT+GGG - chr4.3:26583534-26583553 None:intergenic 20.0%
! GAATAAAATGTAACGTCTTA+AGG + chr4.3:26584344-26584363 MS.gene053488:intron 25.0%
! TGACATGAAAAAAAGATACA+AGG - chr4.3:26583388-26583407 None:intergenic 25.0%
!! CTTTTCTAATTGATAAGGTT+TGG + chr4.3:26583218-26583237 MS.gene053488:intron 25.0%
!! TTTAATTTCAAGTGACGTTT+AGG + chr4.3:26583362-26583381 MS.gene053488:intron 25.0%
!!! ATTTTCAAGCTTCAAATCTA+TGG + chr4.3:26583429-26583448 MS.gene053488:intron 25.0%
AAATTAAGTTAAGGGGAAAC+AGG + chr4.3:26583576-26583595 MS.gene053488:intron 30.0%
AACTTGCACTTAATAGTAAC+CGG + chr4.3:26584522-26584541 MS.gene053488:intron 30.0%
ATCAATCCAAAAGTAACACA+TGG - chr4.3:26583258-26583277 None:intergenic 30.0%
CCAATATACCTAATACCTTA+AGG + chr4.3:26584088-26584107 MS.gene053488:intron 30.0%
GTTAGTTGTGTGATATCATA+TGG + chr4.3:26584718-26584737 MS.gene053488:intron 30.0%
TACATGATCTGTTTCACTTA+CGG - chr4.3:26582930-26582949 None:intergenic 30.0%
TCAATCCAAAAGTAACACAT+GGG - chr4.3:26583257-26583276 None:intergenic 30.0%
TGTTGGATATATAATAGAGG+TGG + chr4.3:26584065-26584084 MS.gene053488:intron 30.0%
TTATTATCGCTCAAAACTGA+GGG + chr4.3:26583756-26583775 MS.gene053488:CDS 30.0%
TTGTGTTGGATCCTATTATA+GGG + chr4.3:26584250-26584269 MS.gene053488:intron 30.0%
! AATGTAACGTCTTAAGGTTT+TGG + chr4.3:26584350-26584369 MS.gene053488:intron 30.0%
! ACTTGTGATGGAACAATTTA+TGG + chr4.3:26583691-26583710 MS.gene053488:CDS 30.0%
! ATCTAGTTGAAGTTTGTTCA+AGG - chr4.3:26584558-26584577 None:intergenic 30.0%
! ATGTAACGTCTTAAGGTTTT+GGG + chr4.3:26584351-26584370 MS.gene053488:intron 30.0%
! CCTTAAGGTATTAGGTATAT+TGG - chr4.3:26584091-26584110 None:intergenic 30.0%
! CTTGTGATGGAACAATTTAT+GGG + chr4.3:26583692-26583711 MS.gene053488:CDS 30.0%
! TACCTAATACCTTAAGGTTT+TGG + chr4.3:26584094-26584113 MS.gene053488:intron 30.0%
! TCATGTAATTTTGGGCTTTT+TGG - chr4.3:26583526-26583545 None:intergenic 30.0%
! TTCCAAAACCTTAAGGTATT+AGG - chr4.3:26584099-26584118 None:intergenic 30.0%
! TTGTGATGGAACAATTTATG+GGG + chr4.3:26583693-26583712 MS.gene053488:CDS 30.0%
! TTTAAGTTAGAAACCCAACT+TGG - chr4.3:26584676-26584695 None:intergenic 30.0%
! TTTATTTACCTGTGACTTGT+CGG + chr4.3:26583453-26583472 MS.gene053488:intron 30.0%
!!! TAATACCTTAAGGTTTTGGA+AGG + chr4.3:26584098-26584117 MS.gene053488:intron 30.0%
AAGGATCTGATACAACTTGT+CGG - chr4.3:26584197-26584216 None:intergenic 35.0%
AATAGAGATCCGACTAAAAG+TGG + chr4.3:26584601-26584620 MS.gene053488:intron 35.0%
ACATGATCTGTTTCACTTAC+GGG - chr4.3:26582929-26582948 None:intergenic 35.0%
ATAGCAGAGATAGTAGACAA+AGG + chr4.3:26583276-26583295 MS.gene053488:CDS 35.0%
ATATATCAGCACCAGTTCAA+GGG + chr4.3:26583057-26583076 MS.gene053488:CDS 35.0%
ATGTTGAGTTCAAGTGTAAG+TGG + chr4.3:26584010-26584029 MS.gene053488:intron 35.0%
CATGTCAATGGGTAAAATGT+TGG + chr4.3:26584048-26584067 MS.gene053488:intron 35.0%
CCATGTTTGCATATGAACAA+CGG + chr4.3:26583499-26583518 MS.gene053488:intron 35.0%
CGTTGTTCATATGCAAACAT+GGG - chr4.3:26583501-26583520 None:intergenic 35.0%
CTTGTCATAGGTGAAATCAT+TGG - chr4.3:26584825-26584844 None:intergenic 35.0%
CTTGTGTTGGATCCTATTAT+AGG + chr4.3:26584249-26584268 MS.gene053488:intron 35.0%
GTTATTATCGCTCAAAACTG+AGG + chr4.3:26583755-26583774 MS.gene053488:CDS 35.0%
TATGCAGATCATAGTAGTCA+TGG + chr4.3:26582950-26582969 MS.gene053488:CDS 35.0%
TGAGATGAGAAAACATGGTT+TGG + chr4.3:26583975-26583994 MS.gene053488:intron 35.0%
! AGGATACATATTGTTGTTGG+TGG - chr4.3:26582906-26582925 None:intergenic 35.0%
!! TTTTGTCTAGCTTCCAAGTT+GGG + chr4.3:26584660-26584679 MS.gene053488:intron 35.0%
!! TTTTTGTCTAGCTTCCAAGT+TGG + chr4.3:26584659-26584678 MS.gene053488:intron 35.0%
AGGATCTGATACAACTTGTC+GGG - chr4.3:26584196-26584215 None:intergenic 40.0%
AGTCTCACATCTCATGTCAA+TGG + chr4.3:26584036-26584055 MS.gene053488:intron 40.0%
CATATATCAGCACCAGTTCA+AGG + chr4.3:26583056-26583075 MS.gene053488:CDS 40.0%
CATCTCCTTCCAAAACCTTA+AGG - chr4.3:26584106-26584125 None:intergenic 40.0%
CCGTTGTTCATATGCAAACA+TGG - chr4.3:26583502-26583521 None:intergenic 40.0%
CTATGCTCATGTCATATCCA+CGG - chr4.3:26583879-26583898 None:intergenic 40.0%
CTTGTCGGTCTTCAAATCTA+TGG + chr4.3:26583468-26583487 MS.gene053488:intron 40.0%
GACAAGTTGTATCAGATCCT+TGG + chr4.3:26584196-26584215 MS.gene053488:intron 40.0%
GATCTCTTAAGCAATGTCTC+GGG + chr4.3:26583950-26583969 MS.gene053488:intron 40.0%
GGATCTCTTAAGCAATGTCT+CGG + chr4.3:26583949-26583968 MS.gene053488:intron 40.0%
GGGAGGATACATATTGTTGT+TGG - chr4.3:26582909-26582928 None:intergenic 40.0%
GTCATAGGTGAAATCATTGG+TGG - chr4.3:26584822-26584841 None:intergenic 40.0%
GTCCTACAAATGCCAAGTTA+TGG + chr4.3:26583004-26583023 MS.gene053488:CDS 40.0%
GTCTCACATCTCATGTCAAT+GGG + chr4.3:26584037-26584056 MS.gene053488:intron 40.0%
GTTGTATCAGATCCTTGGTT+CGG + chr4.3:26584201-26584220 MS.gene053488:intron 40.0%
TACAGAGAACTCAAAAACCG+TGG + chr4.3:26583859-26583878 MS.gene053488:CDS 40.0%
TATATCAGCACCAGTTCAAG+GGG + chr4.3:26583058-26583077 MS.gene053488:CDS 40.0%
TGAAACTTGTGCTCTTTGTC+AGG + chr4.3:26583834-26583853 MS.gene053488:CDS 40.0%
TGAACTAAGCAGTCCATACA+AGG - chr4.3:26583805-26583824 None:intergenic 40.0%
TGATGATCCTGGAATCTGTA+AGG + chr4.3:26583126-26583145 MS.gene053488:intron 40.0%
TGCCATAACTTGGCATTTGT+AGG - chr4.3:26583009-26583028 None:intergenic 40.0%
TGTTCAAGGTAGTTACAAGC+CGG - chr4.3:26584544-26584563 None:intergenic 40.0%
TTCCAGGATCATCAAGACAA+CGG - chr4.3:26583120-26583139 None:intergenic 40.0%
TTGACCAGTGATGTGTTCTT+GGG - chr4.3:26583087-26583106 None:intergenic 40.0%
TTGACCCTTGACTATAGGTT+GGG + chr4.3:26584755-26584774 MS.gene053488:intron 40.0%
TTGTTGGATTCAAGTGTGAG+TGG + chr4.3:26584297-26584316 MS.gene053488:intron 40.0%
TTTGCTTGACCCTTGACTAT+AGG + chr4.3:26584750-26584769 MS.gene053488:intron 40.0%
! CTGATATATGGAGGAGCATA+AGG - chr4.3:26583046-26583065 None:intergenic 40.0%
! GGGTTTGAGATGAGAAAACA+TGG + chr4.3:26583970-26583989 MS.gene053488:intron 40.0%
!! CCTCACTAACCACTTTTAGT+CGG - chr4.3:26584613-26584632 None:intergenic 40.0%
!! CTTGAACTGGTGCTGATATA+TGG - chr4.3:26583058-26583077 None:intergenic 40.0%
!! TTGGACTCTAGAGCACAAAA+GGG - chr4.3:26584395-26584414 None:intergenic 40.0%
!!! AACGTCTTAAGGTTTTGGGT+TGG + chr4.3:26584355-26584374 MS.gene053488:intron 40.0%
!!! TAAGGTTTTGGAAGGAGATG+TGG + chr4.3:26584106-26584125 MS.gene053488:intron 40.0%
!!! TTCTGCCCATGTGTTACTTT+TGG + chr4.3:26583249-26583268 MS.gene053488:CDS 40.0%
ACAACTTGTCGGGGAGTTTA+GGG - chr4.3:26584186-26584205 None:intergenic 45.0%
ACACGATCCTTACAGATTCC+AGG - chr4.3:26583136-26583155 None:intergenic 45.0%
AGAACACATCACTGGTCAAC+TGG + chr4.3:26583088-26583107 MS.gene053488:CDS 45.0%
CCGACTAAAAGTGGTTAGTG+AGG + chr4.3:26584610-26584629 MS.gene053488:intron 45.0%
CGTGGATATGACATGAGCAT+AGG + chr4.3:26583877-26583896 MS.gene053488:CDS 45.0%
CTTGACCCTTGACTATAGGT+TGG + chr4.3:26584754-26584773 MS.gene053488:intron 45.0%
GATCATAGTAGTCATGGCCA+TGG + chr4.3:26582956-26582975 MS.gene053488:CDS 45.0%
GCATCCCAACCTATAGTCAA+GGG - chr4.3:26584762-26584781 None:intergenic 45.0%
GGATCTGATACAACTTGTCG+GGG - chr4.3:26584195-26584214 None:intergenic 45.0%
GTTGACCAGTGATGTGTTCT+TGG - chr4.3:26583088-26583107 None:intergenic 45.0%
TACAACTTGTCGGGGAGTTT+AGG - chr4.3:26584187-26584206 None:intergenic 45.0%
TATGCAGCTTGCACTTGTGA+TGG + chr4.3:26583679-26583698 MS.gene053488:intron 45.0%
TGATCTGTTTCACTTACGGG+AGG - chr4.3:26582926-26582945 None:intergenic 45.0%
TGCTTCTCACGCCCTATAAT+AGG - chr4.3:26584264-26584283 None:intergenic 45.0%
TTTGAAGACCGACAAGTCAC+AGG - chr4.3:26583464-26583483 None:intergenic 45.0%
! AACAATTTATGGGGCGCTAC+TGG + chr4.3:26583702-26583721 MS.gene053488:CDS 45.0%
!! GAACTGGTGCTGATATATGG+AGG - chr4.3:26583055-26583074 None:intergenic 45.0%
!! GTTGGACTCTAGAGCACAAA+AGG - chr4.3:26584396-26584415 None:intergenic 45.0%
!! TGGACTCTAGAGCACAAAAG+GGG - chr4.3:26584394-26584413 None:intergenic 45.0%
AGGGAAGTCGGAAGCAACAA+CGG - chr4.3:26584167-26584186 None:intergenic 50.0%
ATGCCAACGTGGAAAGACAG+AGG + chr4.3:26584778-26584797 MS.gene053488:CDS 50.0%
GACACTGGCATGCCATAACT+TGG - chr4.3:26583019-26583038 None:intergenic 50.0%
GCACTTGAGGGAGAGATTGT+TGG + chr4.3:26584281-26584300 MS.gene053488:intron 50.0%
GCATCCCAAGAACACATCAC+TGG + chr4.3:26583080-26583099 MS.gene053488:CDS 50.0%
GGAGCATAAGGTTGTGACAC+TGG - chr4.3:26583034-26583053 None:intergenic 50.0%
GGCATCCCAACCTATAGTCA+AGG - chr4.3:26584763-26584782 None:intergenic 50.0%
! ACATAGCCTTGACCTTGAGG+GGG - chr4.3:26582986-26583005 None:intergenic 50.0%
! AGGACATAGCCTTGACCTTG+AGG - chr4.3:26582989-26583008 None:intergenic 50.0%
! GACATAGCCTTGACCTTGAG+GGG - chr4.3:26582987-26583006 None:intergenic 50.0%
! GGACATAGCCTTGACCTTGA+GGG - chr4.3:26582988-26583007 None:intergenic 50.0%
! GGCACAATATGACTTGCCAG+AGG + chr4.3:26583777-26583796 MS.gene053488:CDS 50.0%
! TATAGGTTGGGATGCCAACG+TGG + chr4.3:26584767-26584786 MS.gene053488:intron 50.0%
! TGCCGTTGTCTTGATGATCC+TGG + chr4.3:26583115-26583134 MS.gene053488:CDS 50.0%
!! ATCAGATCCTTGGTTCGGCT+TGG + chr4.3:26584206-26584225 MS.gene053488:intron 50.0%
!! ATCCTTGGTTCGGCTTGGAA+GGG + chr4.3:26584211-26584230 MS.gene053488:intron 50.0%
!! GGACTCTAGAGCACAAAAGG+GGG - chr4.3:26584393-26584412 None:intergenic 50.0%
AACGTGGAAAGACAGAGGCC+AGG + chr4.3:26584783-26584802 MS.gene053488:CDS 55.0%
GCTCCAAGTCCCACAAGAGA+GGG - chr4.3:26584137-26584156 None:intergenic 55.0%
GCTGGAGCTGGATCTTGTGT+TGG + chr4.3:26584236-26584255 MS.gene053488:intron 55.0%
GGGAAGTCGGAAGCAACAAC+GGG - chr4.3:26584166-26584185 None:intergenic 55.0%
GTCGGGGAGTTTAGGGAAGT+CGG - chr4.3:26584179-26584198 None:intergenic 55.0%
TCTCCCTCTCTTGTGGGACT+TGG + chr4.3:26584131-26584150 MS.gene053488:intron 55.0%
TCTTGGGATGCCCCTTGAAC+TGG - chr4.3:26583071-26583090 None:intergenic 55.0%
TGCTCCAAGTCCCACAAGAG+AGG - chr4.3:26584138-26584157 None:intergenic 55.0%
TGGCCTCTGTCTTTCCACGT+TGG - chr4.3:26584784-26584803 None:intergenic 55.0%
! CAGTCCATACAAGGTGCCTC+TGG - chr4.3:26583796-26583815 None:intergenic 55.0%
!! AGGGCGTGAGAAGCACTTGA+GGG + chr4.3:26584269-26584288 MS.gene053488:intron 55.0%
!! CTTGCCAGAGGCACCTTGTA+TGG + chr4.3:26583789-26583808 MS.gene053488:CDS 55.0%
!! GATCCTTGGTTCGGCTTGGA+AGG + chr4.3:26584210-26584229 MS.gene053488:intron 55.0%
!! TAGGGCGTGAGAAGCACTTG+AGG + chr4.3:26584268-26584287 MS.gene053488:intron 55.0%
!! TCCTTGGTTCGGCTTGGAAG+GGG + chr4.3:26584212-26584231 MS.gene053488:intron 55.0%
GACCTTGAGGGGGATGACCA+TGG - chr4.3:26582976-26582995 None:intergenic 60.0%
GGTCATCCCCCTCAAGGTCA+AGG + chr4.3:26582977-26582996 MS.gene053488:CDS 60.0%
GTGGCGTCTCCCTCTCTTGT+GGG + chr4.3:26584125-26584144 MS.gene053488:intron 60.0%
TCCCCTTCCAAGCCGAACCA+AGG - chr4.3:26584216-26584235 None:intergenic 60.0%
TGTGGCGTCTCCCTCTCTTG+TGG + chr4.3:26584124-26584143 MS.gene053488:intron 60.0%
CTTGGAAGGGGAGCTGGAGC+TGG + chr4.3:26584224-26584243 MS.gene053488:intron 65.0%
GGCCATGGTCATCCCCCTCA+AGG + chr4.3:26582971-26582990 MS.gene053488:CDS 65.0%
! GGTGGTGCTAGCGCAACTCC+TGG - chr4.3:26584804-26584823 None:intergenic 65.0%
! TGGGGCGCTACTGGCTGTGT+CGG + chr4.3:26583711-26583730 MS.gene053488:CDS 65.0%
!! GTTCGGCTTGGAAGGGGAGC+TGG + chr4.3:26584218-26584237 MS.gene053488:intron 65.0%
! GGGGCGCTACTGGCTGTGTC+GGG + chr4.3:26583712-26583731 MS.gene053488:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 26582896 26584848 26582896 ID=MS.gene053488
chr4.3 mRNA 26582896 26584848 26582896 ID=MS.gene053488.t1;Parent=MS.gene053488
chr4.3 exon 26582896 26583142 26582896 ID=MS.gene053488.t1.exon1;Parent=MS.gene053488.t1
chr4.3 CDS 26582896 26583142 26582896 ID=cds.MS.gene053488.t1;Parent=MS.gene053488.t1
chr4.3 exon 26583235 26583306 26583235 ID=MS.gene053488.t1.exon2;Parent=MS.gene053488.t1
chr4.3 CDS 26583235 26583306 26583235 ID=cds.MS.gene053488.t1;Parent=MS.gene053488.t1
chr4.3 exon 26583686 26583898 26583686 ID=MS.gene053488.t1.exon3;Parent=MS.gene053488.t1
chr4.3 CDS 26583686 26583898 26583686 ID=cds.MS.gene053488.t1;Parent=MS.gene053488.t1
chr4.3 exon 26584772 26584848 26584772 ID=MS.gene053488.t1.exon4;Parent=MS.gene053488.t1
chr4.3 CDS 26584772 26584848 26584772 ID=cds.MS.gene053488.t1;Parent=MS.gene053488.t1
Gene Sequence

>MS.gene053488

ATGAATTCCACCAACAACAATATGTATCCTCCCGTAAGTGAAACAGATCATGTATATGCAGATCATAGTAGTCATGGCCATGGTCATCCCCCTCAAGGTCAAGGCTATGTCCTACAAATGCCAAGTTATGGCATGCCAGTGTCACAACCTTATGCTCCTCCATATATCAGCACCAGTTCAAGGGGCATCCCAAGAACACATCACTGGTCAACTGGTCTTTGCCGTTGTCTTGATGATCCTGGAATCTGTAAGGATCGTGTAATAGATGATTCATTCACCTTTCTTTAAAACACATATATATTATGGTTAATTACTTTTTTTTCTTTTCTAATTGATAAGGTTTGGTCACTTGCTTCTGCCCATGTGTTACTTTTGGATTGATAGCAGAGATAGTAGACAAAGGCAATTCAAGTAAGTAAAAGCTTTTACATAAAATATAGGCAAAATTAATCTTCTGCTCTCTTAATTTAATTTCAAGTGACGTTTAGGCCTTGTATCTTTTTTTCATGTCATTTTGGTCGATTTGCATATCAATTTTCAAGCTTCAAATCTATGGTTTTATTTACCTGTGACTTGTCGGTCTTCAAATCTATGGTTCTTTACCCATGTTTGCATATGAACAACGGACCAAAAAGCCCAAAATTACATGAGAAAAAACTAAAAGACCAAAACATTAAATGAAATTAAGTTAAGGGGAAACAGGTTTAATTTTGCATAAAATTTAAACAAATTAGTACTTATATATCTAGAATCATTATTATTTATCATGTTTTGGTATATATATATGCAGCTTGCACTTGTGATGGAACAATTTATGGGGCGCTACTGGCTGTGTCGGGACTTGCATGTTTATATTCATGTTATTATCGCTCAAAACTGAGGGCACAATATGACTTGCCAGAGGCACCTTGTATGGACTGCTTAGTTCATTTTTGTTGTGAAACTTGTGCTCTTTGTCAGGAATACAGAGAACTCAAAAACCGTGGATATGACATGAGCATAGGTACCTAATTCTTTCTTCAAATACTTCAATTAATATACTAAATTAAACTTGGATCTCTTAAGCAATGTCTCGGGTTTGAGATGAGAAAACATGGTTTGGATGAGAGATTTTATGTTGAGTTCAAGTGTAAGTGGTTAAGTCTCACATCTCATGTCAATGGGTAAAATGTTGGATATATAATAGAGGTGGCCAATATACCTAATACCTTAAGGTTTTGGAAGGAGATGTGGCGTCTCCCTCTCTTGTGGGACTTGGAGCATTTTGCCCGTTGTTGCTTCCGACTTCCCTAAACTCCCCGACAAGTTGTATCAGATCCTTGGTTCGGCTTGGAAGGGGAGCTGGAGCTGGATCTTGTGTTGGATCCTATTATAGGGCGTGAGAAGCACTTGAGGGAGAGATTGTTGGATTCAAGTGTGAGTGGTTAAGTCTCAAATCATTTATCAATGAATAAAATGTAACGTCTTAAGGTTTTGGGTTGGCGAGAAACGTCTCCCCCTTTTGTGCTCTAGAGTCCAACAAATAGAAAAATAAAATGAGAAAAAGATTAATTATATTTAGAATTGATTCAATTAGAAAAATCTATTACAATAAGGTGATCCTTACTAAGATAAAAATCTTATAGTAACTTGCACTTAATAGTAACCGGCTTGTAACTACCTTGAACAAACTTCAACTAGATTTAACAAATCTCTAACTACATTTAATAGAGATCCGACTAAAAGTGGTTAGTGAGGTTACCCAAGAATCTCTATTTTCTTAATTTTTGTCTAGCTTCCAAGTTGGGTTTCTAACTTAAATTTTTGAGGTATTGACGTCTTTGTTAGTTGTGTGATATCATATGGTTTTGTATTTTTGCTTGACCCTTGACTATAGGTTGGGATGCCAACGTGGAAAGACAGAGGCCAGGAGTTGCGCTAGCACCACCAATGATTTCACCTATGACAAGATAA

Protein sequence

>MS.gene053488.t1

MNSTNNNMYPPVSETDHVYADHSSHGHGHPPQGQGYVLQMPSYGMPVSQPYAPPYISTSSRGIPRTHHWSTGLCRCLDDPGICLVTCFCPCVTFGLIAEIVDKGNSTCTCDGTIYGALLAVSGLACLYSCYYRSKLRAQYDLPEAPCMDCLVHFCCETCALCQEYRELKNRGYDMSIGWDANVERQRPGVALAPPMISPMTR