AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57909

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57909.t1 MTR_4g128930 87.500 376 13 2 1 343 1 375 0.0 623
MS.gene57909.t1 MTR_1g013450 44.915 354 122 9 20 342 4 315 5.83e-88 267
MS.gene57909.t1 MTR_3g105710 47.578 351 91 11 20 342 4 289 1.38e-87 265
MS.gene57909.t1 MTR_7g018170 64.835 91 32 0 20 110 24 114 2.52e-39 143
MS.gene57909.t1 MTR_3g034680 79.487 78 16 0 67 144 12 89 4.37e-38 131
MS.gene57909.t1 MTR_1g023260 45.161 93 41 1 22 104 5 97 1.17e-20 88.6
MS.gene57909.t1 MTR_1g023260 45.161 93 41 1 22 104 5 97 1.24e-20 90.5
MS.gene57909.t1 MTR_5g069480 43.333 90 51 0 21 110 4 93 6.59e-19 87.4
MS.gene57909.t1 MTR_5g069480 43.333 90 51 0 21 110 4 93 7.70e-19 85.9
MS.gene57909.t1 MTR_7g108150 28.049 164 99 3 22 185 20 164 4.28e-17 81.6
MS.gene57909.t1 MTR_7g108150 35.417 96 49 1 212 307 287 369 7.46e-12 66.2
MS.gene57909.t1 MTR_4g067320 39.130 92 47 1 22 104 5 96 1.03e-16 79.0
MS.gene57909.t1 MTR_4g067320 39.130 92 47 1 22 104 5 96 1.04e-16 79.0
MS.gene57909.t1 MTR_3g117320 32.331 133 73 2 22 137 5 137 2.01e-16 77.8
MS.gene57909.t1 MTR_5g021580 43.210 81 38 1 21 93 4 84 2.46e-16 76.6
MS.gene57909.t1 MTR_5g021580 43.210 81 38 1 21 93 4 84 2.50e-16 76.6
MS.gene57909.t1 MTR_4g071200 40.860 93 45 1 22 104 5 97 3.69e-16 77.0
MS.gene57909.t1 MTR_3g082630 38.889 90 54 1 21 110 4 92 3.52e-15 76.3
MS.gene57909.t1 MTR_2g099010 36.957 92 49 1 22 104 5 96 4.47e-15 74.3
MS.gene57909.t1 MTR_2g099010 36.957 92 49 1 22 104 5 96 4.95e-15 73.9
MS.gene57909.t1 MTR_2g073370 38.043 92 48 1 22 104 5 96 1.94e-14 73.2
MS.gene57909.t1 MTR_3g113070 36.170 94 49 1 22 104 5 98 7.62e-14 70.5
MS.gene57909.t1 MTR_8g104190 54.795 73 31 1 237 309 331 401 1.97e-13 71.2
MS.gene57909.t1 MTR_2g088900 39.024 82 50 0 21 102 100 181 6.05e-13 70.1
MS.gene57909.t1 MTR_7g083540 40.541 74 44 0 22 95 5 78 5.90e-12 66.6
MS.gene57909.t1 MTR_5g072780 39.640 111 60 2 201 308 110 216 6.42e-12 64.7
MS.gene57909.t1 MTR_1g110870 48.052 77 29 2 232 308 359 424 1.65e-11 65.5
MS.gene57909.t1 MTR_2g096080 43.548 62 32 1 254 312 140 201 3.71e-11 63.2
MS.gene57909.t1 MTR_1g109350 34.146 82 54 0 20 101 3 84 5.79e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57909.t1 AT5G57660 47.120 382 136 10 1 343 1 355 3.23e-100 300
MS.gene57909.t1 AT5G24930 44.648 383 129 12 20 343 4 362 2.50e-91 277
MS.gene57909.t1 AT2G24790 51.316 304 99 10 20 310 6 273 2.99e-88 267
MS.gene57909.t1 AT3G02380 37.363 364 158 10 20 343 14 347 1.73e-70 223
MS.gene57909.t1 AT5G15840 36.800 375 181 11 13 343 11 373 1.40e-69 222
MS.gene57909.t1 AT5G15850 38.919 370 167 9 13 343 6 355 1.41e-68 219
MS.gene57909.t1 AT2G24790 47.556 225 81 8 20 243 6 194 6.60e-56 182
MS.gene57909.t1 AT5G15840 35.294 221 131 7 13 222 11 230 7.12e-39 139
MS.gene57909.t1 AT3G21880 27.933 358 183 14 16 307 4 352 1.02e-23 100
MS.gene57909.t1 AT3G21880 27.933 358 183 14 16 307 4 352 1.02e-23 100
MS.gene57909.t1 AT3G21880 27.557 352 181 13 22 307 5 348 2.11e-23 99.8
MS.gene57909.t1 AT1G49130 26.543 324 187 9 19 313 18 319 8.00e-20 89.0
MS.gene57909.t1 AT1G49130 26.019 319 186 8 19 309 25 321 9.16e-20 89.0
MS.gene57909.t1 AT2G33500 44.944 89 49 0 22 110 12 100 1.68e-18 86.3
MS.gene57909.t1 AT2G33500 44.944 89 49 0 22 110 12 100 1.74e-18 86.3
MS.gene57909.t1 AT1G28050 43.820 89 50 0 22 110 9 97 1.79e-17 83.6
MS.gene57909.t1 AT1G75540 36.434 129 68 2 22 136 5 133 7.97e-17 80.5
MS.gene57909.t1 AT2G21320 40.449 89 45 1 21 101 4 92 1.12e-16 77.0
MS.gene57909.t1 AT2G47890 38.462 91 54 1 20 110 11 99 3.00e-16 77.4
MS.gene57909.t1 AT2G47890 38.462 91 54 1 20 110 11 99 3.39e-16 78.6
MS.gene57909.t1 AT2G47890 38.462 91 54 1 20 110 11 99 3.40e-16 79.0
MS.gene57909.t1 AT4G38960 43.210 81 38 1 21 93 4 84 3.63e-16 75.9
MS.gene57909.t1 AT4G38960 43.210 81 38 1 21 93 4 84 3.63e-16 75.9
MS.gene57909.t1 AT1G06040 40.217 92 46 1 22 104 5 96 3.79e-16 77.4
MS.gene57909.t1 AT1G06040 40.217 92 46 1 22 104 5 96 7.37e-16 75.1
MS.gene57909.t1 AT4G15250 33.544 158 90 5 22 175 5 151 8.17e-16 77.8
MS.gene57909.t1 AT5G48250 39.130 92 54 1 21 110 4 95 1.16e-15 77.8
MS.gene57909.t1 AT3G07650 45.205 73 40 0 21 93 4 76 2.28e-15 76.6
MS.gene57909.t1 AT3G07650 45.205 73 40 0 21 93 4 76 2.28e-15 76.6
MS.gene57909.t1 AT3G07650 45.205 73 40 0 21 93 4 76 2.28e-15 76.6
MS.gene57909.t1 AT3G07650 45.205 73 40 0 21 93 4 76 2.28e-15 76.6
MS.gene57909.t1 AT2G31380 36.036 111 57 2 22 123 5 110 4.88e-15 73.9
MS.gene57909.t1 AT1G78600 38.043 92 48 1 22 104 5 96 1.35e-14 73.9
MS.gene57909.t1 AT1G78600 35.238 105 59 1 22 117 5 109 1.57e-14 73.9
MS.gene57909.t1 AT1G73870 52.000 75 31 2 239 311 319 390 1.22e-13 71.6
MS.gene57909.t1 AT1G68190 36.585 82 52 0 20 101 41 122 1.57e-12 68.6
MS.gene57909.t1 AT1G68190 36.585 82 52 0 20 101 12 93 1.80e-12 68.2
MS.gene57909.t1 AT1G68190 36.585 82 52 0 20 101 12 93 1.80e-12 68.2
MS.gene57909.t1 AT4G39070 32.500 120 71 1 22 131 5 124 8.08e-12 64.7
MS.gene57909.t1 AT1G68520 67.391 46 15 0 266 311 357 402 1.52e-11 65.5
MS.gene57909.t1 AT4G10240 28.767 146 82 3 22 149 5 146 2.79e-11 61.6
MS.gene57909.t1 AT1G25440 51.389 72 30 2 242 308 332 403 5.36e-11 63.9

Find 80 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCGGAATCGATGGTTTC+AGG 0.197771 8.1:-4010421 MS.gene57909:CDS
GCGAACCGGCCTTTAATTCT+AGG 0.209256 8.1:+4010241 None:intergenic
TCAGAGATATCATACAATTT+TGG 0.229801 8.1:-4010442 MS.gene57909:CDS
TTGAGTTTGGATCCGAAATT+AGG 0.238048 8.1:+4010863 None:intergenic
ATCTTGAGTTTCATTGAGTT+TGG 0.285458 8.1:+4010850 None:intergenic
GTCCACATCCGAGTCAATTT+CGG 0.307960 8.1:+4010210 None:intergenic
TGCTGCAGTTAATATTGTTC+TGG 0.321062 8.1:+4010759 None:intergenic
AGAGATGTTCTTCTCTGATA+TGG 0.330404 8.1:-4010816 MS.gene57909:CDS
GAAACCCGGCCTAGAATTAA+AGG 0.334745 8.1:-4010250 MS.gene57909:CDS
CTTCCCGCCACGAGCGCGTC+TGG 0.340581 8.1:-4011162 MS.gene57909:CDS
TGCTGCAGCAGCGGCGGTGG+AGG 0.348757 8.1:+4010970 None:intergenic
CTGATTCCGAATCCTAATTT+CGG 0.371287 8.1:-4010875 MS.gene57909:CDS
TTTCGGTTCGTTTAGCGAAC+CGG 0.407227 8.1:+4010227 None:intergenic
GGAGTAGGTTTAGTTTGAAC+AGG 0.409524 8.1:+4010713 None:intergenic
GGCTGCTGCAGCAGCGGCGG+TGG 0.410930 8.1:+4010967 None:intergenic
CGCGGCTGCTGCAGCAGCGG+CGG 0.413463 8.1:+4010964 None:intergenic
GAGTTTGTTAGCAGAGTGAA+TGG 0.415127 8.1:+4011186 None:intergenic
AGGAACAACGCTATCGTTCA+TGG 0.416132 8.1:+4010733 None:intergenic
TCTGACATCGTGTTTGCATC+TGG 0.422264 8.1:+4010460 None:intergenic
GTTCCTACTGACGACGGTTA+CGG 0.428387 8.1:-4010926 MS.gene57909:CDS
GATCGGAATCGATGGTTTCA+GGG 0.428883 8.1:-4010420 MS.gene57909:CDS
AGTTCCTTCATCTATGCTAA+TGG 0.433285 8.1:-4010158 MS.gene57909:CDS
TTGCTCCTTGCACCACCCCT+TGG 0.448969 8.1:+4010383 None:intergenic
GAGTAATCAAAATCAAGAAA+TGG 0.454052 8.1:+4010791 None:intergenic
TTGGATCCGAAATTAGGATT+CGG 0.457793 8.1:+4010869 None:intergenic
GCTTTGCACGTGACGGAAGC+TGG 0.472622 8.1:+4011115 None:intergenic
AAAGTGGGAACGACGCCGTA+TGG 0.475583 8.1:+4010130 None:intergenic
AACCGAAATTGACTCGGATG+TGG 0.481901 8.1:-4010212 MS.gene57909:CDS
AGACGCGGCTGCTGCAGCAG+CGG 0.489035 8.1:+4010961 None:intergenic
CCGGCCTTTAATTCTAGGCC+GGG 0.498099 8.1:+4010246 None:intergenic
ACCGGCCTTTAATTCTAGGC+CGG 0.502804 8.1:+4010245 None:intergenic
GGAACTGCGAGAGGATCAGC+AGG 0.506955 8.1:+4010175 None:intergenic
AGCAACACAATTATGTGGAA+TGG 0.513777 8.1:-4010365 MS.gene57909:CDS
GAGTCAAAGAAAGGCTCGAC+GGG 0.517190 8.1:+4011013 None:intergenic
TTGCAAGAATCACATAGCTT+AGG 0.521043 8.1:+4011274 None:intergenic
CATAAGATGGGTATTGAAAG+AGG 0.525020 8.1:-4011334 None:intergenic
CATCCAGACGCGCTCGTGGC+GGG 0.525795 8.1:+4011159 None:intergenic
ATGCTAATGGACTGTCCATA+CGG 0.541142 8.1:-4010145 MS.gene57909:CDS
GAGCGAGTGGATTGGCGGAG+TGG 0.557021 8.1:+4011053 None:intergenic
TGCGTCAGCTTTGCACGTGA+CGG 0.560515 8.1:+4011108 None:intergenic
TTATGAGGTACAGAGAGAAG+AGG 0.563746 8.1:-4010327 MS.gene57909:CDS
TGACCGTAACCGTCGTCAGT+AGG 0.571111 8.1:+4010923 None:intergenic
TGGATTGGCGGAGTGGATGT+CGG 0.572687 8.1:+4011060 None:intergenic
AGTAACCAAGGGGTGGTGCA+AGG 0.573333 8.1:-4010388 MS.gene57909:CDS
ATCGGAATCGATGGTTTCAG+GGG 0.573412 8.1:-4010419 MS.gene57909:CDS
TTTGTTAGCAGAGTGAATGG+TGG 0.574357 8.1:+4011189 None:intergenic
CAAGAATCACATAGCTTAGG+TGG 0.574456 8.1:+4011277 None:intergenic
GATTCAGCGGAGTCAAAGAA+AGG 0.575805 8.1:+4011004 None:intergenic
GTGACGACGAGCGAGTGGAT+TGG 0.575999 8.1:+4011045 None:intergenic
TTATGATTCATCATCCGCGC+TGG 0.581963 8.1:+4010692 None:intergenic
CAGTCCATTAGCATAGATGA+AGG 0.582055 8.1:+4010154 None:intergenic
TGGAATGGATCGTGAAGCGA+GGG 0.592479 8.1:-4010350 MS.gene57909:CDS
ACGACGAGCGAGTGGATTGG+CGG 0.592706 8.1:+4011048 None:intergenic
CAAGGAGCAACACAATTATG+TGG 0.592806 8.1:-4010370 MS.gene57909:CDS
ATGATGAATCATAACTCAGA+AGG 0.596503 8.1:-4010683 MS.gene57909:intron
GATCAGCAGGGTTATAGAGA+CGG 0.597767 8.1:+4010188 None:intergenic
CGTTCGTGACGACGAGCGAG+TGG 0.599256 8.1:+4011040 None:intergenic
ATCGTGAAGCGAGGGTTATG+AGG 0.603818 8.1:-4010342 MS.gene57909:CDS
ACATCCAGACGCGCTCGTGG+CGG 0.606168 8.1:+4011158 None:intergenic
TTCATCATCCGCGCTGGAGT+AGG 0.609886 8.1:+4010698 None:intergenic
CCCGGCCTAGAATTAAAGGC+CGG 0.612766 8.1:-4010246 MS.gene57909:CDS
GGGGTGTGAATAGTAACCAA+GGG 0.630822 8.1:-4010399 MS.gene57909:CDS
GGATTTGACGACGGATTCAG+CGG 0.633353 8.1:+4010991 None:intergenic
GTGGAATGGATCGTGAAGCG+AGG 0.634097 8.1:-4010351 MS.gene57909:CDS
GGAGTCAAAGAAAGGCTCGA+CGG 0.644574 8.1:+4011012 None:intergenic
CACACATCCAGACGCGCTCG+TGG 0.646583 8.1:+4011155 None:intergenic
GAAAAGCTTATGCAGAAACC+CGG 0.650052 8.1:-4010264 MS.gene57909:CDS
ATAGATGAAGGAACTGCGAG+AGG 0.656412 8.1:+4010166 None:intergenic
TAAACGAACCGAAATTGACT+CGG 0.658214 8.1:-4010218 MS.gene57909:CDS
TTCGTTGTTCCTACTGACGA+CGG 0.659626 8.1:-4010932 MS.gene57909:CDS
GGCGGTGGAGGATTTGACGA+CGG 0.677124 8.1:+4010982 None:intergenic
ATAGAAATGCAGAATCAGAA+CGG 0.678407 8.1:+4011227 None:intergenic
TGTGAATAGTAACCAAGGGG+TGG 0.689533 8.1:-4010395 MS.gene57909:CDS
TCGGAATCGATGGTTTCAGG+GGG 0.701775 8.1:-4010418 MS.gene57909:CDS
ATGATGCTGAAGCAGCTGCG+TGG 0.709512 8.1:-4010898 MS.gene57909:CDS
AACAACGAAATTGAAAGACG+CGG 0.720436 8.1:+4010946 None:intergenic
GGGTGTGAATAGTAACCAAG+GGG 0.734808 8.1:-4010398 MS.gene57909:CDS
AAGATGGGTATTGAAAGAGG+AGG 0.750089 8.1:-4011331 MS.gene57909:CDS
AAACTAAACCTACTCCAGCG+CGG 0.776053 8.1:-4010706 MS.gene57909:CDS
GAACTGCGAGAGGATCAGCA+GGG 0.795439 8.1:+4010176 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTAATTACTTACGCTA+TGG + chr8.1:4010863-4010882 None:intergenic 20.0%
! GAGTAATCAAAATCAAGAAA+TGG + chr8.1:4010666-4010685 None:intergenic 25.0%
!! GATATCATACAATTTTGGAT+CGG - chr8.1:4011017-4011036 MS.gene57909:CDS 25.0%
!! TCAGAGATATCATACAATTT+TGG - chr8.1:4011012-4011031 MS.gene57909:CDS 25.0%
ATAGAAATGCAGAATCAGAA+CGG + chr8.1:4010230-4010249 None:intergenic 30.0%
ATCTTGAGTTTCATTGAGTT+TGG + chr8.1:4010607-4010626 None:intergenic 30.0%
ATGATGAATCATAACTCAGA+AGG - chr8.1:4010771-4010790 MS.gene57909:CDS 30.0%
! GAATAGTCTTCTCGAATTTT+CGG + chr8.1:4011158-4011177 None:intergenic 30.0%
!! TGATTTGGTTTGTTATTAGC+AGG - chr8.1:4010939-4010958 MS.gene57909:CDS 30.0%
AACAACGAAATTGAAAGACG+CGG + chr8.1:4010511-4010530 None:intergenic 35.0%
AGAGATGTTCTTCTCTGATA+TGG - chr8.1:4010638-4010657 MS.gene57909:intron 35.0%
AGCAACACAATTATGTGGAA+TGG - chr8.1:4011089-4011108 MS.gene57909:CDS 35.0%
AGTTCCTTCATCTATGCTAA+TGG - chr8.1:4011296-4011315 MS.gene57909:CDS 35.0%
ATTACTTACGCTATGGCTAA+TGG + chr8.1:4010856-4010875 None:intergenic 35.0%
CTGATTCCGAATCCTAATTT+CGG - chr8.1:4010579-4010598 MS.gene57909:intron 35.0%
TAAACGAACCGAAATTGACT+CGG - chr8.1:4011236-4011255 MS.gene57909:CDS 35.0%
TGCTGCAGTTAATATTGTTC+TGG + chr8.1:4010698-4010717 None:intergenic 35.0%
TTGAGTTTGGATCCGAAATT+AGG + chr8.1:4010594-4010613 None:intergenic 35.0%
TTGCAAGAATCACATAGCTT+AGG + chr8.1:4010183-4010202 None:intergenic 35.0%
TTGGATCCGAAATTAGGATT+CGG + chr8.1:4010588-4010607 None:intergenic 35.0%
!! GGAATGTGATGGATAGTTAA+AGG + chr8.1:4010835-4010854 None:intergenic 35.0%
CAAGAATCACATAGCTTAGG+TGG + chr8.1:4010180-4010199 None:intergenic 40.0%
CAAGGAGCAACACAATTATG+TGG - chr8.1:4011084-4011103 MS.gene57909:CDS 40.0%
CAGTCCATTAGCATAGATGA+AGG + chr8.1:4011303-4011322 None:intergenic 40.0%
CTATGGCTAATGGAATGTGA+TGG + chr8.1:4010846-4010865 None:intergenic 40.0%
GAAAAGCTTATGCAGAAACC+CGG - chr8.1:4011190-4011209 MS.gene57909:CDS 40.0%
TTATGAGGTACAGAGAGAAG+AGG - chr8.1:4011127-4011146 MS.gene57909:CDS 40.0%
TTTGTTAGCAGAGTGAATGG+TGG + chr8.1:4010268-4010287 None:intergenic 40.0%
! CAATTTTGGATCGGAATCGA+TGG - chr8.1:4011026-4011045 MS.gene57909:CDS 40.0%
! GGACTAAAGAGTTTTCGAAG+CGG - chr8.1:4010144-4010163 MS.gene57909:CDS 40.0%
!! ATGCTAATGGACTGTCCATA+CGG - chr8.1:4011309-4011328 MS.gene57909:CDS 40.0%
!! GAGTTTGTTAGCAGAGTGAA+TGG + chr8.1:4010271-4010290 None:intergenic 40.0%
!! GGAGTAGGTTTAGTTTGAAC+AGG + chr8.1:4010744-4010763 None:intergenic 40.0%
AAACTAAACCTACTCCAGCG+CGG - chr8.1:4010748-4010767 MS.gene57909:CDS 45.0%
AGGAACAACGCTATCGTTCA+TGG + chr8.1:4010724-4010743 None:intergenic 45.0%
ATAGATGAAGGAACTGCGAG+AGG + chr8.1:4011291-4011310 None:intergenic 45.0%
ATCAGAACGGCAAAAAAGCG+CGG + chr8.1:4010217-4010236 None:intergenic 45.0%
ATCGGAATCGATGGTTTCAG+GGG - chr8.1:4011035-4011054 MS.gene57909:CDS 45.0%
ATCTTCACTTGACGTAGGAG+TGG - chr8.1:4010969-4010988 MS.gene57909:CDS 45.0%
GAAACCCGGCCTAGAATTAA+AGG - chr8.1:4011204-4011223 MS.gene57909:CDS 45.0%
GATCAGCAGGGTTATAGAGA+CGG + chr8.1:4011269-4011288 None:intergenic 45.0%
GATCGGAATCGATGGTTTCA+GGG - chr8.1:4011034-4011053 MS.gene57909:CDS 45.0%
GATTCAGCGGAGTCAAAGAA+AGG + chr8.1:4010453-4010472 None:intergenic 45.0%
GGGGTGTGAATAGTAACCAA+GGG - chr8.1:4011055-4011074 MS.gene57909:CDS 45.0%
GGGTGTGAATAGTAACCAAG+GGG - chr8.1:4011056-4011075 MS.gene57909:CDS 45.0%
GTCCACATCCGAGTCAATTT+CGG + chr8.1:4011247-4011266 None:intergenic 45.0%
TCGTCATCTTCACTTGACGT+AGG - chr8.1:4010964-4010983 MS.gene57909:CDS 45.0%
TCTGACATCGTGTTTGCATC+TGG + chr8.1:4010997-4011016 None:intergenic 45.0%
TGTGAATAGTAACCAAGGGG+TGG - chr8.1:4011059-4011078 MS.gene57909:CDS 45.0%
TTATGATTCATCATCCGCGC+TGG + chr8.1:4010765-4010784 None:intergenic 45.0%
TTCGTTGTTCCTACTGACGA+CGG - chr8.1:4010522-4010541 MS.gene57909:intron 45.0%
! TAAAGAGTTTTCGAAGCGGC+TGG - chr8.1:4010148-4010167 MS.gene57909:CDS 45.0%
! TTTCGGTTCGTTTAGCGAAC+CGG + chr8.1:4011230-4011249 None:intergenic 45.0%
!! AACCGAAATTGACTCGGATG+TGG - chr8.1:4011242-4011261 MS.gene57909:CDS 45.0%
!! TTAATTAATTAATAATGATT+TGG - chr8.1:4010924-4010943 MS.gene57909:CDS 5.0%
ACCGGCCTTTAATTCTAGGC+CGG + chr8.1:4011212-4011231 None:intergenic 50.0%
ATCGTGAAGCGAGGGTTATG+AGG - chr8.1:4011112-4011131 MS.gene57909:CDS 50.0%
GAGTCAAAGAAAGGCTCGAC+GGG + chr8.1:4010444-4010463 None:intergenic 50.0%
GCGAACCGGCCTTTAATTCT+AGG + chr8.1:4011216-4011235 None:intergenic 50.0%
GGAGTCAAAGAAAGGCTCGA+CGG + chr8.1:4010445-4010464 None:intergenic 50.0%
GGATCGGAATCGATGGTTTC+AGG - chr8.1:4011033-4011052 MS.gene57909:CDS 50.0%
GTTCCTACTGACGACGGTTA+CGG - chr8.1:4010528-4010547 MS.gene57909:intron 50.0%
TCGGAATCGATGGTTTCAGG+GGG - chr8.1:4011036-4011055 MS.gene57909:CDS 50.0%
TGGAATGGATCGTGAAGCGA+GGG - chr8.1:4011104-4011123 MS.gene57909:CDS 50.0%
! GGATTTGACGACGGATTCAG+CGG + chr8.1:4010466-4010485 None:intergenic 50.0%
! GGGGGTGTGAATAGTAACCA+AGG - chr8.1:4011054-4011073 MS.gene57909:CDS 50.0%
AAAGTGGGAACGACGCCGTA+TGG + chr8.1:4011327-4011346 None:intergenic 55.0%
AGTAACCAAGGGGTGGTGCA+AGG - chr8.1:4011066-4011085 MS.gene57909:CDS 55.0%
ATGATGCTGAAGCAGCTGCG+TGG - chr8.1:4010556-4010575 MS.gene57909:intron 55.0%
CCCGGCCTAGAATTAAAGGC+CGG - chr8.1:4011208-4011227 MS.gene57909:CDS 55.0%
CCGGCCTTTAATTCTAGGCC+GGG + chr8.1:4011211-4011230 None:intergenic 55.0%
GAACTGCGAGAGGATCAGCA+GGG + chr8.1:4011281-4011300 None:intergenic 55.0%
GTGGAATGGATCGTGAAGCG+AGG - chr8.1:4011103-4011122 MS.gene57909:CDS 55.0%
TGACCGTAACCGTCGTCAGT+AGG + chr8.1:4010534-4010553 None:intergenic 55.0%
TGCGTCAGCTTTGCACGTGA+CGG + chr8.1:4010349-4010368 None:intergenic 55.0%
TTCATCATCCGCGCTGGAGT+AGG + chr8.1:4010759-4010778 None:intergenic 55.0%
! AGAACGGCAAAAAAGCGCGG+CGG + chr8.1:4010214-4010233 None:intergenic 55.0%
!! TGGATTGGCGGAGTGGATGT+CGG + chr8.1:4010397-4010416 None:intergenic 55.0%
GGAACTGCGAGAGGATCAGC+AGG + chr8.1:4011282-4011301 None:intergenic 60.0%
GGCGGTGGAGGATTTGACGA+CGG + chr8.1:4010475-4010494 None:intergenic 60.0%
GTGACGACGAGCGAGTGGAT+TGG + chr8.1:4010412-4010431 None:intergenic 60.0%
TTGCTCCTTGCACCACCCCT+TGG + chr8.1:4011074-4011093 None:intergenic 60.0%
! GAACGGCAAAAAAGCGCGGC+GGG + chr8.1:4010213-4010232 None:intergenic 60.0%
! GCTTTGCACGTGACGGAAGC+TGG + chr8.1:4010342-4010361 None:intergenic 60.0%
!! ACGACGAGCGAGTGGATTGG+CGG + chr8.1:4010409-4010428 None:intergenic 60.0%
ACATCCAGACGCGCTCGTGG+CGG + chr8.1:4010299-4010318 None:intergenic 65.0%
CACACATCCAGACGCGCTCG+TGG + chr8.1:4010302-4010321 None:intergenic 65.0%
CGTTCGTGACGACGAGCGAG+TGG + chr8.1:4010417-4010436 None:intergenic 65.0%
!! GAGCGAGTGGATTGGCGGAG+TGG + chr8.1:4010404-4010423 None:intergenic 65.0%
AGACGCGGCTGCTGCAGCAG+CGG + chr8.1:4010496-4010515 None:intergenic 70.0%
CATCCAGACGCGCTCGTGGC+GGG + chr8.1:4010298-4010317 None:intergenic 70.0%
CTTCCCGCCACGAGCGCGTC+TGG - chr8.1:4010292-4010311 MS.gene57909:CDS 75.0%
TGCTGCAGCAGCGGCGGTGG+AGG + chr8.1:4010487-4010506 None:intergenic 75.0%
! CGCGGCTGCTGCAGCAGCGG+CGG + chr8.1:4010493-4010512 None:intergenic 80.0%
! GGCTGCTGCAGCAGCGGCGG+TGG + chr8.1:4010490-4010509 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 4010126 4011350 4010126 ID=MS.gene57909
chr8.1 mRNA 4010126 4011350 4010126 ID=MS.gene57909.t1;Parent=MS.gene57909
chr8.1 exon 4010684 4011350 4010684 ID=MS.gene57909.t1.exon1;Parent=MS.gene57909.t1
chr8.1 CDS 4010684 4011350 4010684 ID=cds.MS.gene57909.t1;Parent=MS.gene57909.t1
chr8.1 exon 4010126 4010490 4010126 ID=MS.gene57909.t1.exon2;Parent=MS.gene57909.t1
chr8.1 CDS 4010126 4010490 4010126 ID=cds.MS.gene57909.t1;Parent=MS.gene57909.t1
Gene Sequence

>MS.gene57909

ATGGGTATTGAAAGAGGAGGACTAAAGAGTTTTCGAAGCGGCTGGAGTGTGCCACCTAAGCTATGTGATTCTTGCAAGCTTACTCCCGCCGCGCTTTTTTGCCGTTCTGATTCTGCATTTCTATGCATCAACTGTGATTCCACCATTCACTCTGCTAACAAACTCTCTTCCCGCCACGAGCGCGTCTGGATGTGTGAAGTTTGTGAACAAGCACCAGCTTCCGTCACGTGCAAAGCTGACGCAGCTGCTCTATGCGTCACGTGCGATTCCGACATCCACTCCGCCAATCCACTCGCTCGTCGTCACGAACGTGTTCCCGTCGAGCCTTTCTTTGACTCCGCTGAATCCGTCGTCAAATCCTCCACCGCCGCTGCTGCAGCAGCCGCGTCTTTCAATTTCGTTGTTCCTACTGACGACGGTTACGGTCAAGATGATGCTGAAGCAGCTGCGTGGCTGATTCCGAATCCTAATTTCGGATCCAAACTCAATGAAACTCAAGATATCAAAACTAGAGAGATGTTCTTCTCTGATATGGATCCATTTCTTGATTTTGATTACTCAAACAATTTCCAGAACAATATTAACTGCAGCAACGCCATGAACGATAGCGTTGTTCCTGTTCAAACTAAACCTACTCCAGCGCGGATGATGAATCATAACTCAGAAGGTTGCTTTGACATTGATTTTTGCAGATCGAAGCTATCTTCCTTTAACTATCCATCACATTCCATTAGCCATAGCGTAAGTAATTAATTTAATGATTTGATTAATTAAGTAATAAGTGTCATTAGAAGTTAATTAATTAATTAATAATGATTTGGTTTGTTATTAGCAGGTTTCGTCATCTTCACTTGACGTAGGAGTGGTGCCAGATGCAAACACGATGTCAGAGATATCATACAATTTTGGATCGGAATCGATGGTTTCAGGGGGTGTGAATAGTAACCAAGGGGTGGTGCAAGGAGCAACACAATTATGTGGAATGGATCGTGAAGCGAGGGTTATGAGGTACAGAGAGAAGAGGAAGAACCGAAAATTCGAGAAGACTATTCGTTATGCTTCTCGAAAAGCTTATGCAGAAACCCGGCCTAGAATTAAAGGCCGGTTCGCTAAACGAACCGAAATTGACTCGGATGTGGACCGTCTCTATAACCCTGCTGATCCTCTCGCAGTTCCTTCATCTATGCTAATGGACTGTCCATACGGCGTCGTTCCCACTTTTTAG
Protein sequence

>MS.gene57909.t1

MGIERGGLKSFRSGWSVPPKLCDSCKLTPAALFCRSDSAFLCINCDSTIHSANKLSSRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAESVVKSSTAAAAAAASFNFVVPTDDGYGQDDAEAAAWLIPNPNFGSKLNETQDIKTREMFFSDMDPFLDFDYSNNFQNNINCSNAMNDSVVPVQTKPTPARMMNHNSEGVVPDANTMSEISYNFGSESMVSGGVNSNQGVVQGATQLCGMDREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRLYNPADPLAVPSSMLMDCPYGVVPTF