Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58289.t1 | XP_024638416.1 | 96.4 | 224 | 8 | 0 | 1 | 224 | 158 | 381 | 2.20E-116 | 428.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58289.t1 | G7JFD1 | 96.4 | 224 | 8 | 0 | 1 | 224 | 159 | 382 | 1.6e-116 | 428.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene58289 | 0.811712 | 6.10E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene58289 | 0.813024 | 3.16E-51 | -1.69E-46 |
| MS.gene050561 | MS.gene58289 | 0.804869 | 1.76E-49 | -1.69E-46 |
| MS.gene050562 | MS.gene58289 | 0.809095 | 2.24E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene58289 | 0.857545 | 1.52E-62 | -1.69E-46 |
| MS.gene058095 | MS.gene58289 | 0.800465 | 1.42E-48 | -1.69E-46 |
| MS.gene05952 | MS.gene58289 | 0.800906 | 1.16E-48 | -1.69E-46 |
| MS.gene059634 | MS.gene58289 | 0.812047 | 5.16E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTAACCTCAGTCAATATC+TGG | 0.301567 | 8.3:-11478361 | None:intergenic |
| CAAGCCATGGGGAGGTCATC+AGG | 0.314002 | 8.3:+11478552 | MS.gene58289:CDS |
| CCTGCTGCCGGCCACCTCTC+TGG | 0.325914 | 8.3:-11478622 | None:intergenic |
| ATTCTAAGTGTAACAAATTC+AGG | 0.335122 | 8.3:-11476987 | None:intergenic |
| TACAAATGCAGCAAAGGGTT+TGG | 0.345687 | 8.3:+11478379 | MS.gene58289:CDS |
| ACATGAATGTGGAAAAGTTT+TGG | 0.353062 | 8.3:+11477024 | MS.gene58289:CDS |
| TGCATGTTCTCTCTGAGAAT+TGG | 0.356505 | 8.3:-11476943 | None:intergenic |
| CATCTCATTCAGTGACTTAG+AGG | 0.405366 | 8.3:+11478496 | MS.gene58289:CDS |
| CACCTGATGGTTCAAGTGAC+TGG | 0.406669 | 8.3:+11478582 | MS.gene58289:CDS |
| TTCCTGTACAAAACATCAAC+AGG | 0.425064 | 8.3:+11478469 | MS.gene58289:CDS |
| CCAGAGAGGTGGCCGGCAGC+AGG | 0.432639 | 8.3:+11478622 | MS.gene58289:CDS |
| TGCACTGGCTATAGAGCAAC+TGG | 0.433774 | 8.3:+11476962 | MS.gene58289:CDS |
| CAGAATCCTTACCTTTCAAA+CGG | 0.480524 | 8.3:-11478649 | None:intergenic |
| GGCTATCCGTTTGAAAGGTA+AGG | 0.484772 | 8.3:+11478643 | MS.gene58289:CDS |
| GATAATAAATTATCAAGCCA+TGG | 0.494233 | 8.3:+11478539 | MS.gene58289:CDS |
| AAGCCATGGGGAGGTCATCA+GGG | 0.501301 | 8.3:+11478553 | MS.gene58289:CDS |
| TGAAGAGAGGAAAGATCTGC+AGG | 0.504764 | 8.3:+11478250 | MS.gene58289:CDS |
| GAGAGGAAAGATCTGCAGGC+TGG | 0.522817 | 8.3:+11478254 | MS.gene58289:CDS |
| ATAATAAATTATCAAGCCAT+GGG | 0.524374 | 8.3:+11478540 | MS.gene58289:CDS |
| GTTCTCTCTGAGAATTGGAC+AGG | 0.528642 | 8.3:-11476938 | None:intergenic |
| ACCCAGTCACTTGAACCATC+AGG | 0.531389 | 8.3:-11478584 | None:intergenic |
| CCACATTCATGTAACTGCAA+AGG | 0.539194 | 8.3:-11477013 | None:intergenic |
| TGGGTACACATCAAGAGGGT+AGG | 0.542546 | 8.3:+11478300 | MS.gene58289:CDS |
| GAGGTTACAAATGCAGCAAA+GGG | 0.544489 | 8.3:+11478374 | MS.gene58289:CDS |
| AAGTCATGCTGATTAAGTCT+TGG | 0.545108 | 8.3:-11477071 | None:intergenic |
| TTCAGTGACTTAGAGGAGGA+TGG | 0.545435 | 8.3:+11478503 | MS.gene58289:CDS |
| ATGCGATAAATCAGATGTTG+TGG | 0.547405 | 8.3:+11478280 | MS.gene58289:CDS |
| ACCTGATGGTTCAAGTGACT+GGG | 0.550874 | 8.3:+11478583 | MS.gene58289:CDS |
| TGAGGTTACAAATGCAGCAA+AGG | 0.555310 | 8.3:+11478373 | MS.gene58289:CDS |
| TTCTCAGAGAGAACATGCAC+TGG | 0.562277 | 8.3:+11476947 | MS.gene58289:CDS |
| GGGTACACATCAAGAGGGTA+GGG | 0.566048 | 8.3:+11478301 | MS.gene58289:CDS |
| GTGAACGCCAGAGAGGTGGC+CGG | 0.568072 | 8.3:+11478615 | MS.gene58289:CDS |
| ATCAGGGGTTCATCACCTGA+TGG | 0.570654 | 8.3:+11478569 | MS.gene58289:CDS |
| CAGCAGGCTATCCGTTTGAA+AGG | 0.572152 | 8.3:+11478638 | MS.gene58289:CDS |
| TTAGATTGTTGAAGCAAGAG+AGG | 0.584005 | 8.3:+11478211 | MS.gene58289:intron |
| TGCGATAAATCAGATGTTGT+GGG | 0.586980 | 8.3:+11478281 | MS.gene58289:CDS |
| CTGAAGACGAGTCAAATGAC+TGG | 0.591333 | 8.3:+11478669 | MS.gene58289:CDS |
| TTCTACGAAAACTTGAAGAG+AGG | 0.596658 | 8.3:+11478237 | MS.gene58289:CDS |
| TCAAACGGATAGCCTGCTGC+CGG | 0.607737 | 8.3:-11478634 | None:intergenic |
| CTAAGTGAACGCCAGAGAGG+TGG | 0.617250 | 8.3:+11478611 | MS.gene58289:CDS |
| CCTTTGCAGTTACATGAATG+TGG | 0.617636 | 8.3:+11477013 | MS.gene58289:CDS |
| AACCCCTGATGACCTCCCCA+TGG | 0.618356 | 8.3:-11478556 | None:intergenic |
| TGTTGTGGGTACACATCAAG+AGG | 0.619910 | 8.3:+11478295 | MS.gene58289:CDS |
| AGCCATGGGGAGGTCATCAG+GGG | 0.623671 | 8.3:+11478554 | MS.gene58289:CDS |
| TAAATTATCAAGCCATGGGG+AGG | 0.633896 | 8.3:+11478544 | MS.gene58289:CDS |
| CTCATTCAGTGACTTAGAGG+AGG | 0.637450 | 8.3:+11478499 | MS.gene58289:CDS |
| TACACATCAAGAGGGTAGGG+AGG | 0.652759 | 8.3:+11478304 | MS.gene58289:CDS |
| GACTTGCCTTTGGACTCGAT+AGG | 0.696417 | 8.3:-11477100 | None:intergenic |
| TCAAAACCAGATATTGACTG+AGG | 0.697876 | 8.3:+11478355 | MS.gene58289:CDS |
| CAGCTAAGTGAACGCCAGAG+AGG | 0.701849 | 8.3:+11478608 | MS.gene58289:CDS |
| GTTGTGGGTACACATCAAGA+GGG | 0.714852 | 8.3:+11478296 | MS.gene58289:CDS |
| TGAGTGCCTATCGAGTCCAA+AGG | 0.721677 | 8.3:+11477094 | MS.gene58289:CDS |
| CAAGAGGGTAGGGAGGACAG+TGG | 0.722445 | 8.3:+11478311 | MS.gene58289:CDS |
| GGGTTTGGAAATCGACGACG+CGG | 0.736079 | 8.3:+11478394 | MS.gene58289:CDS |
| TAATAAATTATCAAGCCATG+GGG | 0.741905 | 8.3:+11478541 | MS.gene58289:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGCATGTAAAAATAAAATA+AGG | - | chr8.3:11477461-11477480 | None:intergenic | 15.0% |
| !!! | GATAAATTTTTAGATAGTTA+TGG | + | chr8.3:11477740-11477759 | MS.gene58289:intron | 15.0% |
| !! | AAAAATACATACATGTTTCA+CGG | - | chr8.3:11477264-11477283 | None:intergenic | 20.0% |
| !! | AGAAGAATAAAAAAATAGAG+AGG | - | chr8.3:11477496-11477515 | None:intergenic | 20.0% |
| !! | ATAATAAATTATCAAGCCAT+GGG | + | chr8.3:11478540-11478559 | MS.gene58289:CDS | 20.0% |
| !! | GATAAAATATCATAGATCAT+TGG | + | chr8.3:11477612-11477631 | MS.gene58289:intron | 20.0% |
| !! | TGAATAAAACTCACATAAAA+AGG | - | chr8.3:11477230-11477249 | None:intergenic | 20.0% |
| !! | TTTAATATAACCGAATCATA+AGG | - | chr8.3:11477692-11477711 | None:intergenic | 20.0% |
| !!! | AAAGCATATTTTTAAACAAG+GGG | + | chr8.3:11478101-11478120 | MS.gene58289:intron | 20.0% |
| !!! | ATGTATGTATTTTTCATTGT+TGG | + | chr8.3:11477270-11477289 | MS.gene58289:intron | 20.0% |
| !!! | GAAAGCATATTTTTAAACAA+GGG | + | chr8.3:11478100-11478119 | MS.gene58289:intron | 20.0% |
| !!! | TGAAAGCATATTTTTAAACA+AGG | + | chr8.3:11478099-11478118 | MS.gene58289:intron | 20.0% |
| ! | AAAAAGACAATATGATAACC+AGG | - | chr8.3:11477592-11477611 | None:intergenic | 25.0% |
| ! | AAAATGCCATGAATAAAACA+AGG | - | chr8.3:11477667-11477686 | None:intergenic | 25.0% |
| ! | AATAAAAAATTATCGTAGCC+AGG | + | chr8.3:11477356-11477375 | MS.gene58289:intron | 25.0% |
| ! | ACATAATATATCAGACAGTT+AGG | - | chr8.3:11478167-11478186 | None:intergenic | 25.0% |
| ! | ATAAAACTCACATAAAAAGG+CGG | - | chr8.3:11477227-11477246 | None:intergenic | 25.0% |
| ! | ATTAAAAAAGGCAAGTAAAG+AGG | - | chr8.3:11477945-11477964 | None:intergenic | 25.0% |
| ! | ATTAAAATCTTTCACTTGCT+TGG | + | chr8.3:11477860-11477879 | MS.gene58289:intron | 25.0% |
| ! | ATTCTAAGTGTAACAAATTC+AGG | - | chr8.3:11476990-11477009 | None:intergenic | 25.0% |
| ! | GATAATAAATTATCAAGCCA+TGG | + | chr8.3:11478539-11478558 | MS.gene58289:CDS | 25.0% |
| ! | TAATAAATTATCAAGCCATG+GGG | + | chr8.3:11478541-11478560 | MS.gene58289:CDS | 25.0% |
| ! | TGCTCTATATTTACATGTTT+GGG | + | chr8.3:11477767-11477786 | MS.gene58289:intron | 25.0% |
| ! | TTAAAAAAGGCAAGTAAAGA+GGG | - | chr8.3:11477944-11477963 | None:intergenic | 25.0% |
| ! | TTAAAATCTTTCACTTGCTT+GGG | + | chr8.3:11477861-11477880 | MS.gene58289:intron | 25.0% |
| ! | TTACTTTCATATGAATAGCA+AGG | + | chr8.3:11477142-11477161 | MS.gene58289:intron | 25.0% |
| !!! | AAGCATATTTTTAAACAAGG+GGG | + | chr8.3:11478102-11478121 | MS.gene58289:intron | 25.0% |
| ATGTACGTATTTAACACACT+TGG | - | chr8.3:11477168-11477187 | None:intergenic | 30.0% | |
| GAAATGTTGGGGATTAAAAA+AGG | - | chr8.3:11477957-11477976 | None:intergenic | 30.0% | |
| GTGCTCTATATTTACATGTT+TGG | + | chr8.3:11477766-11477785 | MS.gene58289:intron | 30.0% | |
| TCTATATTTACATGTTTGGG+TGG | + | chr8.3:11477770-11477789 | MS.gene58289:intron | 30.0% | |
| ! | ACATGAATGTGGAAAAGTTT+TGG | + | chr8.3:11477024-11477043 | MS.gene58289:CDS | 30.0% |
| ! | ATTTTTAAACAAGGGGGAAA+GGG | + | chr8.3:11478108-11478127 | MS.gene58289:intron | 30.0% |
| ! | GGCATTTTATCCTTATGATT+CGG | + | chr8.3:11477679-11477698 | MS.gene58289:intron | 30.0% |
| ! | TTTTTAATCCCCAACATTTC+AGG | + | chr8.3:11477957-11477976 | MS.gene58289:intron | 30.0% |
| !! | TATTTTTAAACAAGGGGGAA+AGG | + | chr8.3:11478107-11478126 | MS.gene58289:intron | 30.0% |
| !!! | GTTTGTCCTTGTTTTATTCA+TGG | + | chr8.3:11477658-11477677 | MS.gene58289:intron | 30.0% |
| AACTTCCATACACAACCTAA+AGG | + | chr8.3:11478068-11478087 | MS.gene58289:intron | 35.0% | |
| AATGACTGCATAGACATAAG+AGG | - | chr8.3:11477192-11477211 | None:intergenic | 35.0% | |
| AGTTCTTGAAACAAAGGAGA+AGG | + | chr8.3:11477884-11477903 | MS.gene58289:intron | 35.0% | |
| ATGCGATAAATCAGATGTTG+TGG | + | chr8.3:11478280-11478299 | MS.gene58289:CDS | 35.0% | |
| CAGAATCCTTACCTTTCAAA+CGG | - | chr8.3:11478652-11478671 | None:intergenic | 35.0% | |
| GTTCTTGAAACAAAGGAGAA+GGG | + | chr8.3:11477885-11477904 | MS.gene58289:intron | 35.0% | |
| TGCGATAAATCAGATGTTGT+GGG | + | chr8.3:11478281-11478300 | MS.gene58289:CDS | 35.0% | |
| TTAGATTGTTGAAGCAAGAG+AGG | + | chr8.3:11478211-11478230 | MS.gene58289:intron | 35.0% | |
| TTCCTGTACAAAACATCAAC+AGG | + | chr8.3:11478469-11478488 | MS.gene58289:CDS | 35.0% | |
| TTCTACGAAAACTTGAAGAG+AGG | + | chr8.3:11478237-11478256 | MS.gene58289:CDS | 35.0% | |
| TTGTAACCTCAGTCAATATC+TGG | - | chr8.3:11478364-11478383 | None:intergenic | 35.0% | |
| TTTACCCTTCTTTCCAAACA+AGG | + | chr8.3:11477981-11478000 | MS.gene58289:intron | 35.0% | |
| ! | AAGTCATGCTGATTAAGTCT+TGG | - | chr8.3:11477074-11477093 | None:intergenic | 35.0% |
| ! | GAATAAACATGACTTGCCTT+TGG | - | chr8.3:11477113-11477132 | None:intergenic | 35.0% |
| ! | TCAAAACCAGATATTGACTG+AGG | + | chr8.3:11478355-11478374 | MS.gene58289:CDS | 35.0% |
| ! | TCATCAAGAGCATATGACAA+AGG | - | chr8.3:11477429-11477448 | None:intergenic | 35.0% |
| ! | TTCCTGTTGATGTTTTGTAC+AGG | - | chr8.3:11478474-11478493 | None:intergenic | 35.0% |
| !! | ACAAACCTTTAGGTTGTGTA+TGG | - | chr8.3:11478076-11478095 | None:intergenic | 35.0% |
| !! | GCACTGTATATGAAGTATTG+TGG | + | chr8.3:11477389-11477408 | MS.gene58289:intron | 35.0% |
| !! | TTCTTCTAAAATGCAGCTTG+TGG | + | chr8.3:11477509-11477528 | MS.gene58289:intron | 35.0% |
| !!! | ACATTTTCTCAGGCTTTGTT+TGG | + | chr8.3:11477795-11477814 | MS.gene58289:intron | 35.0% |
| !!! | AGTTTTTGGAGTATAGGGAA+AGG | + | chr8.3:11477824-11477843 | MS.gene58289:intron | 35.0% |
| !!! | CATTTTCTCAGGCTTTGTTT+GGG | + | chr8.3:11477796-11477815 | MS.gene58289:intron | 35.0% |
| !!! | GTTTTTGGAGTATAGGGAAA+GGG | + | chr8.3:11477825-11477844 | MS.gene58289:intron | 35.0% |
| AAACAAAGGAGAAGGGTTTG+GGG | + | chr8.3:11477892-11477911 | MS.gene58289:intron | 40.0% | |
| AAGGGTAAAGCCTGAAATGT+TGG | - | chr8.3:11477970-11477989 | None:intergenic | 40.0% | |
| ACGCGGTCAATAGTGAAAAA+TGG | + | chr8.3:11478411-11478430 | MS.gene58289:CDS | 40.0% | |
| AGGGTAAAGCCTGAAATGTT+GGG | - | chr8.3:11477969-11477988 | None:intergenic | 40.0% | |
| AGGTTGTGTATGGAAGTTAG+TGG | - | chr8.3:11478066-11478085 | None:intergenic | 40.0% | |
| CATCTCATTCAGTGACTTAG+AGG | + | chr8.3:11478496-11478515 | MS.gene58289:CDS | 40.0% | |
| CCACATTCATGTAACTGCAA+AGG | - | chr8.3:11477016-11477035 | None:intergenic | 40.0% | |
| CCTTTGCAGTTACATGAATG+TGG | + | chr8.3:11477013-11477032 | MS.gene58289:CDS | 40.0% | |
| CTTGGGAGTTCTTGAAACAA+AGG | + | chr8.3:11477878-11477897 | MS.gene58289:intron | 40.0% | |
| GAAACAAAGGAGAAGGGTTT+GGG | + | chr8.3:11477891-11477910 | MS.gene58289:intron | 40.0% | |
| GAGGTTACAAATGCAGCAAA+GGG | + | chr8.3:11478374-11478393 | MS.gene58289:CDS | 40.0% | |
| GCTTTCAGAGACAAACCTTT+AGG | - | chr8.3:11478086-11478105 | None:intergenic | 40.0% | |
| GGTTGTGTATGGAAGTTAGT+GGG | - | chr8.3:11478065-11478084 | None:intergenic | 40.0% | |
| GTTGTGTATGGAAGTTAGTG+GGG | - | chr8.3:11478064-11478083 | None:intergenic | 40.0% | |
| TAAATTATCAAGCCATGGGG+AGG | + | chr8.3:11478544-11478563 | MS.gene58289:CDS | 40.0% | |
| TACAAATGCAGCAAAGGGTT+TGG | + | chr8.3:11478379-11478398 | MS.gene58289:CDS | 40.0% | |
| TGAAACAAAGGAGAAGGGTT+TGG | + | chr8.3:11477890-11477909 | MS.gene58289:intron | 40.0% | |
| TGAGGTTACAAATGCAGCAA+AGG | + | chr8.3:11478373-11478392 | MS.gene58289:CDS | 40.0% | |
| TTCTTTCCAAACAAGGTGAG+AGG | + | chr8.3:11477988-11478007 | MS.gene58289:intron | 40.0% | |
| ! | CTCACCTTGTTTGGAAAGAA+GGG | - | chr8.3:11477988-11478007 | None:intergenic | 40.0% |
| ! | TCTCACCTTGTTTGGAAAGA+AGG | - | chr8.3:11477989-11478008 | None:intergenic | 40.0% |
| ! | TGCATGTTCTCTCTGAGAAT+TGG | - | chr8.3:11476946-11476965 | None:intergenic | 40.0% |
| ! | TTGGGTGGAAACATTTTCTC+AGG | + | chr8.3:11477785-11477804 | MS.gene58289:intron | 40.0% |
| !! | ATTTGTTGTCAGTCTCTGCA+TGG | + | chr8.3:11477566-11477585 | MS.gene58289:intron | 40.0% |
| !! | CAGACAGTTAGGCTTTGTTA+TGG | - | chr8.3:11478156-11478175 | None:intergenic | 40.0% |
| !! | CAGTTAGGCTTTGTTATGGA+AGG | - | chr8.3:11478152-11478171 | None:intergenic | 40.0% |
| !!! | AGGGGAGTTTTTGGAGTATA+GGG | + | chr8.3:11477819-11477838 | MS.gene58289:intron | 40.0% |
| ACCTGATGGTTCAAGTGACT+GGG | + | chr8.3:11478583-11478602 | MS.gene58289:CDS | 45.0% | |
| AGAGGAGGGAAAGACTTTGA+AGG | - | chr8.3:11478040-11478059 | None:intergenic | 45.0% | |
| AGGACAAACACAAGCTACAG+AGG | - | chr8.3:11477647-11477666 | None:intergenic | 45.0% | |
| CTCATTCAGTGACTTAGAGG+AGG | + | chr8.3:11478499-11478518 | MS.gene58289:CDS | 45.0% | |
| CTGAAGACGAGTCAAATGAC+TGG | + | chr8.3:11478669-11478688 | MS.gene58289:CDS | 45.0% | |
| GGCTATCCGTTTGAAAGGTA+AGG | + | chr8.3:11478643-11478662 | MS.gene58289:CDS | 45.0% | |
| GGGTAAAGCCTGAAATGTTG+GGG | - | chr8.3:11477968-11477987 | None:intergenic | 45.0% | |
| GTTGTGGGTACACATCAAGA+GGG | + | chr8.3:11478296-11478315 | MS.gene58289:CDS | 45.0% | |
| TACAGTGCTTTACGTTCTCC+TGG | - | chr8.3:11477377-11477396 | None:intergenic | 45.0% | |
| TATGGAAGTTAGTGGGGAAG+AGG | - | chr8.3:11478058-11478077 | None:intergenic | 45.0% | |
| TGAAGAGAGGAAAGATCTGC+AGG | + | chr8.3:11478250-11478269 | MS.gene58289:CDS | 45.0% | |
| TGTTGTGGGTACACATCAAG+AGG | + | chr8.3:11478295-11478314 | MS.gene58289:CDS | 45.0% | |
| TTCAGTGACTTAGAGGAGGA+TGG | + | chr8.3:11478503-11478522 | MS.gene58289:CDS | 45.0% | |
| TTCTCAGAGAGAACATGCAC+TGG | + | chr8.3:11476947-11476966 | MS.gene58289:CDS | 45.0% | |
| TTGGAGTATAGGGAAAGGGA+GGG | + | chr8.3:11477829-11477848 | MS.gene58289:intron | 45.0% | |
| ! | AAGGCAAGTAAAGAGGGCAT+TGG | - | chr8.3:11477938-11477957 | None:intergenic | 45.0% |
| ! | AGGGAAAGACTTTGAAGGAG+GGG | - | chr8.3:11478035-11478054 | None:intergenic | 45.0% |
| ! | GAGGGAAAGACTTTGAAGGA+GGG | - | chr8.3:11478036-11478055 | None:intergenic | 45.0% |
| ! | GTTCTCTCTGAGAATTGGAC+AGG | - | chr8.3:11476941-11476960 | None:intergenic | 45.0% |
| ! | TTGTTTGGGAGGGGAGTTTT+TGG | + | chr8.3:11477810-11477829 | MS.gene58289:intron | 45.0% |
| ! | TTTGGAGTATAGGGAAAGGG+AGG | + | chr8.3:11477828-11477847 | MS.gene58289:intron | 45.0% |
| !! | TTCTCAGGCTTTGTTTGGGA+GGG | + | chr8.3:11477800-11477819 | MS.gene58289:intron | 45.0% |
| !! | TTTCTCAGGCTTTGTTTGGG+AGG | + | chr8.3:11477799-11477818 | MS.gene58289:intron | 45.0% |
| !!! | GAGGGGAGTTTTTGGAGTAT+AGG | + | chr8.3:11477818-11477837 | MS.gene58289:intron | 45.0% |
| AACAAGGGGGAAAGGGTTTG+AGG | + | chr8.3:11478115-11478134 | MS.gene58289:intron | 50.0% | |
| ACCCAGTCACTTGAACCATC+AGG | - | chr8.3:11478587-11478606 | None:intergenic | 50.0% | |
| ATCAGGGGTTCATCACCTGA+TGG | + | chr8.3:11478569-11478588 | MS.gene58289:CDS | 50.0% | |
| CACCTGATGGTTCAAGTGAC+TGG | + | chr8.3:11478582-11478601 | MS.gene58289:CDS | 50.0% | |
| CAGCAGGCTATCCGTTTGAA+AGG | + | chr8.3:11478638-11478657 | MS.gene58289:CDS | 50.0% | |
| GAAGTTAGTGGGGAAGAGGA+GGG | - | chr8.3:11478054-11478073 | None:intergenic | 50.0% | |
| GACTTGCCTTTGGACTCGAT+AGG | - | chr8.3:11477103-11477122 | None:intergenic | 50.0% | |
| GGGTAACCTCTCACCTTGTT+TGG | - | chr8.3:11477997-11478016 | None:intergenic | 50.0% | |
| GGGTACACATCAAGAGGGTA+GGG | + | chr8.3:11478301-11478320 | MS.gene58289:CDS | 50.0% | |
| TACACATCAAGAGGGTAGGG+AGG | + | chr8.3:11478304-11478323 | MS.gene58289:CDS | 50.0% | |
| TGAGTGCCTATCGAGTCCAA+AGG | + | chr8.3:11477094-11477113 | MS.gene58289:CDS | 50.0% | |
| TGGAGTATAGGGAAAGGGAG+GGG | + | chr8.3:11477830-11477849 | MS.gene58289:intron | 50.0% | |
| TGGGTACACATCAAGAGGGT+AGG | + | chr8.3:11478300-11478319 | MS.gene58289:CDS | 50.0% | |
| ! | AGACTTTGAAGGAGGGGGAA+TGG | - | chr8.3:11478029-11478048 | None:intergenic | 50.0% |
| ! | GACTTTGAAGGAGGGGGAAT+GGG | - | chr8.3:11478028-11478047 | None:intergenic | 50.0% |
| ! | GGAGGGAAAGACTTTGAAGG+AGG | - | chr8.3:11478037-11478056 | None:intergenic | 50.0% |
| ! | GGGAAAGACTTTGAAGGAGG+GGG | - | chr8.3:11478034-11478053 | None:intergenic | 50.0% |
| !! | GCAAGTAAAGAGGGCATTGG+AGG | - | chr8.3:11477935-11477954 | None:intergenic | 50.0% |
| !! | TCTCAGGCTTTGTTTGGGAG+GGG | + | chr8.3:11477801-11477820 | MS.gene58289:intron | 50.0% |
| !! | TGCACTGGCTATAGAGCAAC+TGG | + | chr8.3:11476962-11476981 | MS.gene58289:CDS | 50.0% |
| AAGCCATGGGGAGGTCATCA+GGG | + | chr8.3:11478553-11478572 | MS.gene58289:CDS | 55.0% | |
| AGGGGGAATGGGAGAAGGAT+GGG | - | chr8.3:11478017-11478036 | None:intergenic | 55.0% | |
| AGTATAGGGAAAGGGAGGGG+AGG | + | chr8.3:11477833-11477852 | MS.gene58289:intron | 55.0% | |
| CAGCTAAGTGAACGCCAGAG+AGG | + | chr8.3:11478608-11478627 | MS.gene58289:CDS | 55.0% | |
| CTAAGTGAACGCCAGAGAGG+TGG | + | chr8.3:11478611-11478630 | MS.gene58289:CDS | 55.0% | |
| GAGAGGAAAGATCTGCAGGC+TGG | + | chr8.3:11478254-11478273 | MS.gene58289:CDS | 55.0% | |
| GGAAGTTAGTGGGGAAGAGG+AGG | - | chr8.3:11478055-11478074 | None:intergenic | 55.0% | |
| GGGTTTGGAAATCGACGACG+CGG | + | chr8.3:11478394-11478413 | MS.gene58289:CDS | 55.0% | |
| GTATAGGGAAAGGGAGGGGA+GGG | + | chr8.3:11477834-11477853 | MS.gene58289:intron | 55.0% | |
| TCAAACGGATAGCCTGCTGC+CGG | - | chr8.3:11478637-11478656 | None:intergenic | 55.0% | |
| TTGTCAGTCTCTGCATGGCC+TGG | + | chr8.3:11477571-11477590 | MS.gene58289:intron | 55.0% | |
| AACCCCTGATGACCTCCCCA+TGG | - | chr8.3:11478559-11478578 | None:intergenic | 60.0% | |
| AGCCATGGGGAGGTCATCAG+GGG | + | chr8.3:11478554-11478573 | MS.gene58289:CDS | 60.0% | |
| CAAGAGGGTAGGGAGGACAG+TGG | + | chr8.3:11478311-11478330 | MS.gene58289:CDS | 60.0% | |
| CAAGCCATGGGGAGGTCATC+AGG | + | chr8.3:11478552-11478571 | MS.gene58289:CDS | 60.0% | |
| GAAGGAGGGGGAATGGGAGA+AGG | - | chr8.3:11478022-11478041 | None:intergenic | 60.0% | |
| GAGGGGGAATGGGAGAAGGA+TGG | - | chr8.3:11478018-11478037 | None:intergenic | 60.0% | |
| GTGAACGCCAGAGAGGTGGC+CGG | + | chr8.3:11478615-11478634 | MS.gene58289:CDS | 65.0% | |
| CCAGAGAGGTGGCCGGCAGC+AGG | + | chr8.3:11478622-11478641 | MS.gene58289:CDS | 75.0% | |
| CCTGCTGCCGGCCACCTCTC+TGG | - | chr8.3:11478625-11478644 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 11476928 | 11478703 | 11476928 | ID=MS.gene58289 |
| chr8.3 | mRNA | 11476928 | 11478703 | 11476928 | ID=MS.gene58289.t1;Parent=MS.gene58289 |
| chr8.3 | exon | 11476928 | 11477115 | 11476928 | ID=MS.gene58289.t1.exon1;Parent=MS.gene58289.t1 |
| chr8.3 | CDS | 11476928 | 11477115 | 11476928 | ID=cds.MS.gene58289.t1;Parent=MS.gene58289.t1 |
| chr8.3 | exon | 11478215 | 11478703 | 11478215 | ID=MS.gene58289.t1.exon2;Parent=MS.gene58289.t1 |
| chr8.3 | CDS | 11478215 | 11478703 | 11478215 | ID=cds.MS.gene58289.t1;Parent=MS.gene58289.t1 |
| Gene Sequence |
| Protein sequence |
