Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59269.t1 | XP_024641127.1 | 97.6 | 251 | 6 | 0 | 25 | 275 | 86 | 336 | 3.00E-146 | 528.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59269.t1 | Q945S8 | 63.0 | 281 | 69 | 6 | 30 | 275 | 82 | 362 | 2.4e-96 | 354.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59269.t1 | G7KMG0 | 97.6 | 251 | 6 | 0 | 25 | 275 | 86 | 336 | 2.1e-146 | 528.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene59269.t1 | TR | SET |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050799 | MS.gene59269 | 0.826453 | 2.69E-54 | -1.69E-46 |
MS.gene051744 | MS.gene59269 | 0.82014 | 8.03E-53 | -1.69E-46 |
MS.gene052519 | MS.gene59269 | 0.826795 | 2.23E-54 | -1.69E-46 |
MS.gene052584 | MS.gene59269 | 0.803347 | 3.64E-49 | -1.69E-46 |
MS.gene052611 | MS.gene59269 | 0.803467 | 3.44E-49 | -1.69E-46 |
MS.gene053967 | MS.gene59269 | 0.805371 | 1.38E-49 | -1.69E-46 |
MS.gene056366 | MS.gene59269 | 0.820273 | 7.48E-53 | -1.69E-46 |
MS.gene058829 | MS.gene59269 | 0.806415 | 8.32E-50 | -1.69E-46 |
MS.gene059625 | MS.gene59269 | 0.826638 | 2.43E-54 | -1.69E-46 |
MS.gene06094 | MS.gene59269 | 0.813702 | 2.24E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59269.t1 | MTR_6g059310 | 97.610 | 251 | 6 | 0 | 25 | 275 | 86 | 336 | 0.0 | 524 |
MS.gene59269.t1 | MTR_6g059310 | 93.870 | 261 | 6 | 1 | 25 | 275 | 86 | 346 | 0.0 | 516 |
MS.gene59269.t1 | MTR_0071s0100 | 54.971 | 171 | 75 | 1 | 22 | 192 | 183 | 351 | 7.06e-59 | 201 |
MS.gene59269.t1 | MTR_8g479260 | 58.824 | 170 | 42 | 2 | 403 | 546 | 344 | 511 | 4.06e-56 | 198 |
MS.gene59269.t1 | MTR_2g008650 | 58.824 | 170 | 42 | 2 | 403 | 546 | 344 | 511 | 4.50e-56 | 198 |
MS.gene59269.t1 | MTR_1g098000 | 47.305 | 167 | 86 | 2 | 28 | 192 | 71 | 237 | 5.20e-38 | 147 |
MS.gene59269.t1 | MTR_1g098370 | 46.707 | 167 | 87 | 2 | 28 | 192 | 74 | 240 | 2.19e-37 | 145 |
MS.gene59269.t1 | MTR_3g088625 | 43.931 | 173 | 94 | 3 | 22 | 191 | 1188 | 1360 | 1.30e-35 | 143 |
MS.gene59269.t1 | MTR_3g088625 | 43.931 | 173 | 94 | 3 | 22 | 191 | 1294 | 1466 | 1.38e-35 | 143 |
MS.gene59269.t1 | MTR_4g036240 | 41.176 | 170 | 72 | 2 | 396 | 539 | 190 | 357 | 1.66e-28 | 118 |
MS.gene59269.t1 | MTR_4g036240 | 38.743 | 191 | 86 | 3 | 396 | 560 | 253 | 438 | 4.06e-28 | 118 |
MS.gene59269.t1 | MTR_4g036240 | 38.743 | 191 | 86 | 3 | 396 | 560 | 333 | 518 | 7.25e-28 | 118 |
MS.gene59269.t1 | MTR_3g056270 | 38.220 | 191 | 87 | 3 | 396 | 560 | 492 | 677 | 2.86e-27 | 117 |
MS.gene59269.t1 | MTR_8g078490 | 35.556 | 180 | 100 | 3 | 26 | 189 | 1073 | 1252 | 1.15e-23 | 106 |
MS.gene59269.t1 | MTR_4g132610 | 34.444 | 180 | 102 | 3 | 26 | 189 | 867 | 1046 | 1.32e-23 | 106 |
MS.gene59269.t1 | MTR_8g078505 | 34.682 | 173 | 100 | 2 | 26 | 185 | 361 | 533 | 4.20e-23 | 103 |
MS.gene59269.t1 | MTR_5g018850 | 35.000 | 180 | 101 | 3 | 26 | 189 | 1327 | 1506 | 4.70e-23 | 104 |
MS.gene59269.t1 | MTR_7g021365 | 38.129 | 139 | 81 | 2 | 51 | 186 | 905 | 1041 | 6.60e-19 | 91.3 |
MS.gene59269.t1 | MTR_1g012910 | 34.483 | 145 | 89 | 2 | 51 | 189 | 363 | 507 | 3.65e-18 | 88.2 |
MS.gene59269.t1 | MTR_1g012910 | 34.483 | 145 | 89 | 2 | 51 | 189 | 526 | 670 | 4.53e-18 | 88.2 |
MS.gene59269.t1 | MTR_5g013420 | 29.851 | 201 | 107 | 6 | 23 | 189 | 888 | 1088 | 5.95e-18 | 88.6 |
MS.gene59269.t1 | MTR_7g088370 | 29.189 | 185 | 109 | 4 | 24 | 186 | 517 | 701 | 1.24e-17 | 87.0 |
MS.gene59269.t1 | MTR_5g013420 | 29.949 | 197 | 104 | 6 | 23 | 185 | 888 | 1084 | 1.39e-17 | 87.4 |
MS.gene59269.t1 | MTR_7g117355 | 38.776 | 147 | 75 | 4 | 55 | 187 | 816 | 961 | 1.46e-17 | 87.0 |
MS.gene59269.t1 | MTR_2g048560 | 33.613 | 119 | 66 | 1 | 391 | 496 | 317 | 435 | 1.49e-17 | 86.3 |
MS.gene59269.t1 | MTR_2g036060 | 34.848 | 132 | 86 | 0 | 51 | 182 | 1032 | 1163 | 1.83e-17 | 87.0 |
MS.gene59269.t1 | MTR_2g036060 | 34.848 | 132 | 86 | 0 | 51 | 182 | 1057 | 1188 | 2.32e-17 | 86.7 |
MS.gene59269.t1 | MTR_1g012890 | 32.414 | 145 | 92 | 2 | 51 | 189 | 223 | 367 | 2.90e-17 | 84.0 |
MS.gene59269.t1 | MTR_4g010830 | 30.000 | 200 | 106 | 6 | 24 | 189 | 780 | 979 | 2.93e-17 | 86.3 |
MS.gene59269.t1 | MTR_3g091310 | 37.692 | 130 | 76 | 3 | 62 | 187 | 932 | 1060 | 3.22e-16 | 82.8 |
MS.gene59269.t1 | MTR_3g091310 | 37.692 | 130 | 76 | 3 | 62 | 187 | 838 | 966 | 3.67e-16 | 82.8 |
MS.gene59269.t1 | MTR_6g445520 | 48.315 | 89 | 45 | 1 | 403 | 491 | 207 | 294 | 5.46e-16 | 80.9 |
MS.gene59269.t1 | MTR_3g011440 | 27.488 | 211 | 96 | 5 | 24 | 186 | 459 | 660 | 2.10e-15 | 79.7 |
MS.gene59269.t1 | MTR_1g008230 | 36.923 | 130 | 77 | 3 | 62 | 187 | 903 | 1031 | 1.75e-14 | 77.4 |
MS.gene59269.t1 | MTR_1g008230 | 36.923 | 130 | 77 | 3 | 62 | 187 | 625 | 753 | 1.94e-14 | 77.0 |
MS.gene59269.t1 | MTR_8g042750 | 27.317 | 205 | 111 | 5 | 24 | 190 | 484 | 688 | 2.34e-14 | 76.6 |
MS.gene59269.t1 | MTR_8g027725 | 35.385 | 130 | 79 | 3 | 62 | 187 | 803 | 931 | 2.67e-14 | 76.6 |
MS.gene59269.t1 | MTR_8g027725 | 35.385 | 130 | 79 | 3 | 62 | 187 | 818 | 946 | 2.69e-14 | 76.6 |
MS.gene59269.t1 | MTR_5g016870 | 33.077 | 130 | 85 | 2 | 40 | 169 | 703 | 830 | 2.07e-13 | 73.9 |
MS.gene59269.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 40 | 176 | 599 | 730 | 3.60e-13 | 72.8 |
MS.gene59269.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 40 | 176 | 471 | 602 | 3.67e-13 | 72.8 |
MS.gene59269.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 40 | 176 | 671 | 802 | 4.28e-13 | 72.8 |
MS.gene59269.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 40 | 176 | 620 | 751 | 4.39e-13 | 72.8 |
MS.gene59269.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 40 | 176 | 651 | 782 | 4.65e-13 | 72.8 |
MS.gene59269.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 40 | 176 | 661 | 792 | 4.76e-13 | 72.4 |
MS.gene59269.t1 | MTR_4g010550 | 29.255 | 188 | 107 | 7 | 24 | 189 | 280 | 463 | 1.17e-12 | 70.5 |
MS.gene59269.t1 | MTR_7g055660 | 33.058 | 121 | 79 | 2 | 51 | 171 | 582 | 700 | 6.84e-12 | 68.9 |
MS.gene59269.t1 | MTR_6g472230 | 55.000 | 60 | 26 | 1 | 317 | 376 | 18 | 76 | 6.47e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59269.t1 | AT2G44150 | 62.989 | 281 | 69 | 6 | 30 | 275 | 82 | 362 | 7.28e-114 | 343 |
MS.gene59269.t1 | AT3G59960 | 59.684 | 253 | 70 | 6 | 30 | 250 | 77 | 329 | 2.95e-88 | 276 |
MS.gene59269.t1 | AT3G59960 | 72.376 | 181 | 37 | 1 | 30 | 197 | 77 | 257 | 4.38e-85 | 266 |
MS.gene59269.t1 | AT3G59960 | 72.376 | 181 | 37 | 1 | 30 | 197 | 77 | 257 | 4.38e-85 | 266 |
MS.gene59269.t1 | AT3G59960 | 72.376 | 181 | 37 | 1 | 30 | 197 | 77 | 257 | 4.38e-85 | 266 |
MS.gene59269.t1 | AT4G30860 | 51.111 | 180 | 86 | 1 | 20 | 199 | 297 | 474 | 1.83e-57 | 200 |
MS.gene59269.t1 | AT1G76710 | 45.509 | 167 | 89 | 2 | 28 | 192 | 65 | 231 | 2.90e-36 | 142 |
MS.gene59269.t1 | AT1G76710 | 45.509 | 167 | 89 | 2 | 28 | 192 | 65 | 231 | 2.90e-36 | 142 |
MS.gene59269.t1 | AT1G76710 | 45.509 | 167 | 89 | 2 | 28 | 192 | 65 | 231 | 4.08e-36 | 141 |
MS.gene59269.t1 | AT1G76710 | 45.509 | 167 | 89 | 2 | 28 | 192 | 65 | 231 | 4.84e-36 | 141 |
MS.gene59269.t1 | AT1G77300 | 42.286 | 175 | 98 | 3 | 22 | 193 | 996 | 1170 | 5.93e-36 | 144 |
MS.gene59269.t1 | AT1G77300 | 42.286 | 175 | 98 | 3 | 22 | 193 | 996 | 1170 | 6.96e-36 | 144 |
MS.gene59269.t1 | AT2G23740 | 36.158 | 177 | 92 | 5 | 30 | 186 | 1196 | 1371 | 6.22e-22 | 101 |
MS.gene59269.t1 | AT2G23740 | 36.158 | 177 | 92 | 5 | 30 | 186 | 1203 | 1378 | 6.98e-22 | 100 |
MS.gene59269.t1 | AT2G23740 | 36.158 | 177 | 92 | 5 | 30 | 186 | 1203 | 1378 | 6.98e-22 | 100 |
MS.gene59269.t1 | AT2G23740 | 36.158 | 177 | 92 | 5 | 30 | 186 | 1203 | 1378 | 6.98e-22 | 100 |
MS.gene59269.t1 | AT2G35160 | 33.871 | 186 | 103 | 5 | 16 | 189 | 580 | 757 | 6.49e-20 | 94.4 |
MS.gene59269.t1 | AT2G35160 | 33.871 | 186 | 103 | 5 | 16 | 189 | 616 | 793 | 6.81e-20 | 94.4 |
MS.gene59269.t1 | AT2G35160 | 33.871 | 186 | 103 | 5 | 16 | 189 | 616 | 793 | 6.81e-20 | 94.4 |
MS.gene59269.t1 | AT2G35160 | 33.871 | 186 | 103 | 5 | 16 | 189 | 616 | 793 | 6.81e-20 | 94.4 |
MS.gene59269.t1 | AT2G35160 | 33.871 | 186 | 103 | 5 | 16 | 189 | 616 | 793 | 6.81e-20 | 94.4 |
MS.gene59269.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 64 | 189 | 1262 | 1387 | 2.01e-19 | 93.2 |
MS.gene59269.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 64 | 189 | 1262 | 1387 | 2.01e-19 | 93.2 |
MS.gene59269.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 64 | 189 | 1262 | 1387 | 2.01e-19 | 93.2 |
MS.gene59269.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 64 | 189 | 1262 | 1387 | 2.01e-19 | 93.2 |
MS.gene59269.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 64 | 189 | 1262 | 1387 | 2.01e-19 | 93.2 |
MS.gene59269.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 64 | 189 | 1262 | 1387 | 2.01e-19 | 93.2 |
MS.gene59269.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 64 | 189 | 1262 | 1387 | 2.01e-19 | 93.2 |
MS.gene59269.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 64 | 189 | 1262 | 1387 | 2.01e-19 | 93.2 |
MS.gene59269.t1 | AT2G22740 | 30.986 | 213 | 111 | 7 | 13 | 189 | 577 | 789 | 5.93e-18 | 88.2 |
MS.gene59269.t1 | AT2G22740 | 30.986 | 213 | 111 | 7 | 13 | 189 | 577 | 789 | 5.93e-18 | 88.2 |
MS.gene59269.t1 | AT1G05830 | 36.691 | 139 | 83 | 2 | 51 | 186 | 919 | 1055 | 2.07e-17 | 86.7 |
MS.gene59269.t1 | AT1G05830 | 36.691 | 139 | 83 | 2 | 51 | 186 | 919 | 1055 | 2.07e-17 | 86.7 |
MS.gene59269.t1 | AT1G05830 | 36.691 | 139 | 83 | 2 | 51 | 186 | 919 | 1055 | 2.07e-17 | 86.7 |
MS.gene59269.t1 | AT1G05830 | 36.691 | 139 | 83 | 2 | 51 | 186 | 919 | 1055 | 2.07e-17 | 86.7 |
MS.gene59269.t1 | AT2G31650 | 36.691 | 139 | 83 | 2 | 51 | 186 | 898 | 1034 | 3.74e-17 | 85.9 |
MS.gene59269.t1 | AT4G27910 | 38.462 | 130 | 75 | 3 | 62 | 187 | 896 | 1024 | 7.71e-16 | 81.6 |
MS.gene59269.t1 | AT1G17770 | 28.774 | 212 | 112 | 6 | 12 | 186 | 480 | 689 | 1.90e-15 | 80.1 |
MS.gene59269.t1 | AT1G02580 | 34.177 | 158 | 94 | 3 | 26 | 175 | 511 | 666 | 9.24e-15 | 77.8 |
MS.gene59269.t1 | AT3G61740 | 38.168 | 131 | 75 | 4 | 62 | 187 | 886 | 1015 | 1.90e-14 | 77.4 |
MS.gene59269.t1 | AT3G61740 | 38.346 | 133 | 72 | 5 | 62 | 187 | 850 | 979 | 2.28e-14 | 77.0 |
MS.gene59269.t1 | AT5G53430 | 36.923 | 130 | 77 | 3 | 62 | 187 | 912 | 1040 | 2.83e-14 | 76.6 |
MS.gene59269.t1 | AT5G04940 | 27.586 | 203 | 110 | 5 | 24 | 190 | 469 | 670 | 9.58e-14 | 74.7 |
MS.gene59269.t1 | AT5G04940 | 27.586 | 203 | 110 | 5 | 24 | 190 | 469 | 670 | 9.58e-14 | 74.7 |
MS.gene59269.t1 | AT3G03750 | 29.189 | 185 | 106 | 6 | 30 | 193 | 170 | 350 | 1.75e-13 | 72.4 |
MS.gene59269.t1 | AT5G13960 | 28.141 | 199 | 104 | 5 | 30 | 189 | 291 | 489 | 2.67e-13 | 72.8 |
MS.gene59269.t1 | AT4G02020 | 32.847 | 137 | 87 | 3 | 40 | 176 | 696 | 827 | 3.60e-13 | 73.2 |
MS.gene59269.t1 | AT5G13960 | 28.141 | 199 | 104 | 5 | 30 | 189 | 425 | 623 | 5.35e-13 | 72.4 |
MS.gene59269.t1 | AT2G24740 | 27.551 | 196 | 97 | 6 | 35 | 190 | 565 | 755 | 4.61e-11 | 66.2 |
MS.gene59269.t1 | AT2G23380 | 36.111 | 108 | 67 | 2 | 62 | 169 | 763 | 868 | 6.47e-11 | 65.9 |
MS.gene59269.t1 | AT2G23380 | 36.111 | 108 | 67 | 2 | 62 | 169 | 536 | 641 | 6.62e-11 | 65.5 |
Find 110 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCAAAGGCACATTGAATTA+TGG | 0.189056 | 6.4:+44735686 | MS.gene59269:CDS |
CCTGAGATTGCTGGACTTAT+TGG | 0.206628 | 6.4:+44740135 | MS.gene59269:CDS |
ACAGATTTGGGATTATTAAA+TGG | 0.239891 | 6.4:+44729400 | MS.gene59269:intron |
ACCTGATATGCCACTAATTT+AGG | 0.249497 | 6.4:-44724845 | None:intergenic |
CATAGCAGGTTTGTTCAATT+TGG | 0.254145 | 6.4:+44724755 | MS.gene59269:intron |
CATTTCTGCATCTCAGTATT+CGG | 0.269242 | 6.4:-44724131 | None:intergenic |
GCCTAAATTAGTGGCATATC+AGG | 0.297012 | 6.4:+44724844 | MS.gene59269:CDS |
TTCAGACTATGCAGGAGATT+TGG | 0.319903 | 6.4:+44735760 | MS.gene59269:CDS |
CTTCTGTCTAGCTGTTCTTC+AGG | 0.341155 | 6.4:+44723440 | MS.gene59269:CDS |
CTGTCTAATAGCTAGATATA+TGG | 0.346867 | 6.4:+44735613 | MS.gene59269:intron |
CAGTATTCGGGCAGCAACTA+TGG | 0.356191 | 6.4:-44724118 | None:intergenic |
GTGATAGATGCGACAAATAA+AGG | 0.361111 | 6.4:+44724074 | MS.gene59269:CDS |
AAACAAGCTTACCAGTTTGC+AGG | 0.361797 | 6.4:-44729052 | None:intergenic |
TGGTCAAACTTTCCTCTTCA+AGG | 0.365164 | 6.4:+44740155 | MS.gene59269:CDS |
CGGAATGACTGCTCAAATCT+TGG | 0.373851 | 6.4:-44740201 | None:intergenic |
TCTTGGAGAAAAGTCAGTTT+TGG | 0.373973 | 6.4:-44740184 | None:intergenic |
TCAAAGGCACATTGAATTAT+GGG | 0.375488 | 6.4:+44735687 | MS.gene59269:CDS |
GATCCCTACCATTGTTTGTA+TGG | 0.392611 | 6.4:-44740301 | None:intergenic |
TCCATCTTTAGGATAATAGA+TGG | 0.401604 | 6.4:+44724280 | MS.gene59269:intron |
ATAAACTCCTGGATAATATC+AGG | 0.404640 | 6.4:-44740246 | None:intergenic |
GTATTATACCATTCCATGTT+CGG | 0.405007 | 6.4:-44740003 | None:intergenic |
TGTTCAATGTAGGCGTAAGC+TGG | 0.427738 | 6.4:+44724805 | MS.gene59269:CDS |
ATGTGAAATCAATCGAGATA+TGG | 0.429587 | 6.4:+44724052 | MS.gene59269:CDS |
ATTATATAAGAAAGATGAGT+TGG | 0.430613 | 6.4:+44735712 | MS.gene59269:CDS |
ATAGATGGTGAAACTAGAAT+TGG | 0.431640 | 6.4:+44724295 | MS.gene59269:CDS |
TATTATGCAGTGTGTCAGAT+TGG | 0.432070 | 6.4:+44738688 | MS.gene59269:intron |
ATGCAGGAGATTTGGATGAT+AGG | 0.433853 | 6.4:+44735768 | MS.gene59269:CDS |
AAACATGCGAACAGAGGCTT+TGG | 0.435383 | 6.4:+44723994 | MS.gene59269:CDS |
CAGAATGGAGGCCTGCAAAC+TGG | 0.440962 | 6.4:+44729041 | MS.gene59269:CDS |
ATGACATGTCAAAAGAAGAA+TGG | 0.445126 | 6.4:+44729772 | MS.gene59269:CDS |
CGAATACTGAGATGCAGAAA+TGG | 0.448001 | 6.4:+44724132 | MS.gene59269:CDS |
TTTGCCTTGAACTTATCAAC+AGG | 0.449015 | 6.4:-44740634 | None:intergenic |
TGCTCTCAATTTACAACGCA+CGG | 0.453755 | 6.4:-44739895 | None:intergenic |
ACCTACCAAGCCTAAATTAG+TGG | 0.455934 | 6.4:+44724835 | MS.gene59269:CDS |
CCCACTTCTTCATAAACTCC+TGG | 0.456489 | 6.4:-44740257 | None:intergenic |
TTTGGACAGGTTTATCAGAA+TGG | 0.457254 | 6.4:+44729026 | MS.gene59269:intron |
TGAACCTGTTGATAAGTTCA+AGG | 0.467888 | 6.4:+44740630 | MS.gene59269:CDS |
CAGATGAAGATATAAAGCTT+GGG | 0.468240 | 6.4:+44723832 | MS.gene59269:CDS |
TAGACTGAGAAATGTGGATC+TGG | 0.471672 | 6.4:+44723801 | MS.gene59269:intron |
GATGATAGGAAGAGCACCTC+TGG | 0.472357 | 6.4:+44735782 | MS.gene59269:CDS |
TGACATGTCAAAAGAAGAAT+GGG | 0.478376 | 6.4:+44729773 | MS.gene59269:CDS |
ATTTCTGCATCTCAGTATTC+GGG | 0.478549 | 6.4:-44724130 | None:intergenic |
TGTTGTACCTGATATTATCC+AGG | 0.480476 | 6.4:+44740239 | MS.gene59269:CDS |
GCAGATGAAGATATAAAGCT+TGG | 0.481699 | 6.4:+44723831 | MS.gene59269:CDS |
TCTTCAAGCAGTGAAGATAA+TGG | 0.487007 | 6.4:+44734480 | MS.gene59269:CDS |
CCAATAAGTCCAGCAATCTC+AGG | 0.487592 | 6.4:-44740135 | None:intergenic |
TGTTCTTCAGGCTGCAAATG+TGG | 0.494922 | 6.4:+44723452 | MS.gene59269:CDS |
AAGTTCAAGGCAAAGATTGT+GGG | 0.505271 | 6.4:+44740643 | MS.gene59269:CDS |
TGCAAGTCGTGATATAAAGA+AGG | 0.505376 | 6.4:+44724324 | MS.gene59269:CDS |
TGGGCTCTGAACTGAAAGGC+TGG | 0.507475 | 6.4:+44735732 | MS.gene59269:CDS |
ATATGCCACTAATTTAGGCT+TGG | 0.510433 | 6.4:-44724840 | None:intergenic |
AGCAGTGAAGATAATGGTGA+AGG | 0.515136 | 6.4:+44734510 | MS.gene59269:CDS |
AATTGAGTAAGCAATTTGAA+TGG | 0.521092 | 6.4:-44729209 | None:intergenic |
GAAGAAAGCAGTGAAGATAA+TGG | 0.528742 | 6.4:+44734504 | MS.gene59269:CDS |
TCCAGGAGTTTATGAAGAAG+TGG | 0.532784 | 6.4:+44740256 | MS.gene59269:CDS |
CATTCTGCCACTACAAATCT+CGG | 0.535427 | 6.4:-44740790 | None:intergenic |
TTTCAGATCATGTTTGAGGA+TGG | 0.537141 | 6.4:+44729735 | MS.gene59269:intron |
GTTCTTCAGGCTGCAAATGT+GGG | 0.537608 | 6.4:+44723453 | MS.gene59269:CDS |
GTAATTGAATATGTCGGAGA+AGG | 0.545438 | 6.4:+44723861 | MS.gene59269:CDS |
CATGTTCGCCGAACATGGAA+TGG | 0.546328 | 6.4:+44739995 | MS.gene59269:CDS |
GCTCTCAATTTACAACGCAC+GGG | 0.551696 | 6.4:-44739894 | None:intergenic |
TCACACTGATTATGCTACAT+TGG | 0.553753 | 6.4:+44739923 | MS.gene59269:CDS |
GTGCTCTGGTGTTGTCACAC+AGG | 0.559370 | 6.4:+44740669 | MS.gene59269:CDS |
TTATATAAGAAAGATGAGTT+GGG | 0.561098 | 6.4:+44735713 | MS.gene59269:CDS |
ATTGCAAGTGTCACTGATGA+TGG | 0.561556 | 6.4:+44734432 | MS.gene59269:CDS |
GCCACTAATTTAGGCTTGGT+AGG | 0.568833 | 6.4:-44724836 | None:intergenic |
TTGAGCAGTCATTCCGCATG+AGG | 0.570527 | 6.4:+44740208 | MS.gene59269:CDS |
GTTATTATGATAAAACAACT+TGG | 0.570866 | 6.4:+44729243 | MS.gene59269:CDS |
GCTGACATGTTCGCCGAACA+TGG | 0.572241 | 6.4:+44739990 | MS.gene59269:CDS |
TAAGTTCAAGGCAAAGATTG+TGG | 0.573651 | 6.4:+44740642 | MS.gene59269:CDS |
ACTGTGGTGCTGTTCAATGT+AGG | 0.576878 | 6.4:+44724795 | MS.gene59269:CDS |
TTCATTCTCCATACAAACAA+TGG | 0.580737 | 6.4:+44740293 | MS.gene59269:CDS |
TTATGTTTAGGCTATAGCCG+AGG | 0.582223 | 6.4:+44740101 | MS.gene59269:intron |
TGGACAGATTCAGACTATGC+AGG | 0.584859 | 6.4:+44735752 | MS.gene59269:CDS |
CTCAGGTGGAAAATGACCCT+CGG | 0.585135 | 6.4:-44740118 | None:intergenic |
TCTGATTCTACTGCTGTATG+TGG | 0.586087 | 6.4:+44723203 | MS.gene59269:CDS |
GAGTTTGTAATTGAATATGT+CGG | 0.587237 | 6.4:+44723855 | MS.gene59269:CDS |
CCAGGAGTTTATGAAGAAGT+GGG | 0.591052 | 6.4:+44740257 | MS.gene59269:CDS |
GAAGCATCATGAATTTCTGT+TGG | 0.599416 | 6.4:-44735641 | None:intergenic |
GGACAGGTTTATCAGAATGG+AGG | 0.603637 | 6.4:+44729029 | MS.gene59269:intron |
TATGTTTAGGCTATAGCCGA+GGG | 0.603914 | 6.4:+44740102 | MS.gene59269:intron |
GTTCAATGTAGGCGTAAGCT+GGG | 0.608277 | 6.4:+44724806 | MS.gene59269:CDS |
CTTTGGAATATGAAAGATCG+TGG | 0.610205 | 6.4:+44724011 | MS.gene59269:CDS |
GCAAGTCGTGATATAAAGAA+GGG | 0.610253 | 6.4:+44724325 | MS.gene59269:CDS |
CGTATTCTTAGATATCTCAA+AGG | 0.613072 | 6.4:+44735671 | MS.gene59269:CDS |
GCAGTGTGACATTTCTATGA+CGG | 0.616504 | 6.4:-44740925 | None:intergenic |
GAGTTTATGAAGAAGTGGGA+AGG | 0.617614 | 6.4:+44740261 | MS.gene59269:CDS |
CTCTCAATTTACAACGCACG+GGG | 0.623469 | 6.4:-44739893 | None:intergenic |
GCAGTGAAGATAATGGTGAA+GGG | 0.624135 | 6.4:+44734511 | MS.gene59269:CDS |
TCTTCTGCCGAGATTTGTAG+TGG | 0.625845 | 6.4:+44740783 | MS.gene59269:CDS |
ATAGAAATGTCACACTGCCA+AGG | 0.626401 | 6.4:+44740930 | MS.gene59269:CDS |
TTTGGAATATGAAAGATCGT+GGG | 0.627929 | 6.4:+44724012 | MS.gene59269:CDS |
TCAAACTTTCCTCTTCAAGG+TGG | 0.634274 | 6.4:+44740158 | MS.gene59269:CDS |
AGTTCAAGGCAAAGATTGTG+GGG | 0.636594 | 6.4:+44740644 | MS.gene59269:CDS |
ATGATAAAACATGCGAACAG+AGG | 0.637191 | 6.4:+44723988 | MS.gene59269:CDS |
AGATGAAGATATAAAGCTTG+GGG | 0.642869 | 6.4:+44723833 | MS.gene59269:CDS |
TAAAACAACTTGGAAATGTG+AGG | 0.644254 | 6.4:+44729253 | MS.gene59269:CDS |
ATAAGTCCAGCAATCTCAGG+TGG | 0.645570 | 6.4:-44740132 | None:intergenic |
GTGGTAGAGATTGCCACTGT+GGG | 0.651295 | 6.4:+44723222 | MS.gene59269:CDS |
CAACACAAATCTTCCTCATG+CGG | 0.651299 | 6.4:-44740221 | None:intergenic |
TGAATATTCTCGAAAACACA+AGG | 0.669513 | 6.4:+44729428 | MS.gene59269:CDS |
GAAATGTGGATCTGGAATTG+TGG | 0.670067 | 6.4:+44723809 | MS.gene59269:CDS |
TGTGGTAGAGATTGCCACTG+TGG | 0.693149 | 6.4:+44723221 | MS.gene59269:CDS |
TTGGAATATGAAAGATCGTG+GGG | 0.693630 | 6.4:+44724013 | MS.gene59269:CDS |
GCAGATCAAGATTGCCACTG+TGG | 0.694777 | 6.4:+44724779 | MS.gene59269:CDS |
GAGTTGGGCTCTGAACTGAA+AGG | 0.702688 | 6.4:+44735728 | MS.gene59269:CDS |
GTTCAAGGCAAAGATTGTGG+GGG | 0.703984 | 6.4:+44740645 | MS.gene59269:CDS |
TACATTGAACAGCACCACAG+TGG | 0.726690 | 6.4:-44724793 | None:intergenic |
ACTTAGTTACTTACCCACAG+TGG | 0.732787 | 6.4:-44723235 | None:intergenic |
TGCTTGTAGACTGAGAAATG+TGG | 0.734376 | 6.4:+44723795 | MS.gene59269:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 44723177 | 44741089 | 44723177 | ID=MS.gene59269 |
chr6.4 | mRNA | 44723177 | 44741089 | 44723177 | ID=MS.gene59269.t1;Parent=MS.gene59269 |
chr6.4 | exon | 44723177 | 44723247 | 44723177 | ID=MS.gene59269.t1.exon1;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44723177 | 44723247 | 44723177 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44723436 | 44723535 | 44723436 | ID=MS.gene59269.t1.exon2;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44723436 | 44723535 | 44723436 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44723804 | 44723882 | 44723804 | ID=MS.gene59269.t1.exon3;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44723804 | 44723882 | 44723804 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44723982 | 44724153 | 44723982 | ID=MS.gene59269.t1.exon4;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44723982 | 44724153 | 44723982 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44724291 | 44724371 | 44724291 | ID=MS.gene59269.t1.exon5;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44724291 | 44724371 | 44724291 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44724763 | 44724865 | 44724763 | ID=MS.gene59269.t1.exon6;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44724763 | 44724865 | 44724763 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44729035 | 44729062 | 44729035 | ID=MS.gene59269.t1.exon7;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44729035 | 44729062 | 44729035 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44729190 | 44729274 | 44729190 | ID=MS.gene59269.t1.exon8;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44729190 | 44729274 | 44729190 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44729404 | 44729449 | 44729404 | ID=MS.gene59269.t1.exon9;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44729404 | 44729449 | 44729404 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44729741 | 44729800 | 44729741 | ID=MS.gene59269.t1.exon10;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44729741 | 44729800 | 44729741 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44734414 | 44734537 | 44734414 | ID=MS.gene59269.t1.exon11;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44734414 | 44734537 | 44734414 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44735624 | 44735803 | 44735624 | ID=MS.gene59269.t1.exon12;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44735624 | 44735803 | 44735624 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44738698 | 44738755 | 44738698 | ID=MS.gene59269.t1.exon13;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44738698 | 44738755 | 44738698 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44739887 | 44740016 | 44739887 | ID=MS.gene59269.t1.exon14;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44739887 | 44740016 | 44739887 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44740111 | 44740314 | 44740111 | ID=MS.gene59269.t1.exon15;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44740111 | 44740314 | 44740111 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44740613 | 44740690 | 44740613 | ID=MS.gene59269.t1.exon16;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44740613 | 44740690 | 44740613 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44740781 | 44740811 | 44740781 | ID=MS.gene59269.t1.exon17;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44740781 | 44740811 | 44740781 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44740898 | 44740951 | 44740898 | ID=MS.gene59269.t1.exon18;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44740898 | 44740951 | 44740898 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
chr6.4 | exon | 44741070 | 44741089 | 44741070 | ID=MS.gene59269.t1.exon19;Parent=MS.gene59269.t1 |
chr6.4 | CDS | 44741070 | 44741089 | 44741070 | ID=cds.MS.gene59269.t1;Parent=MS.gene59269.t1 |
Gene Sequence |
Protein sequence |