Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06094.t1 | XP_013447225.1 | 93.7 | 175 | 5 | 1 | 1 | 175 | 1 | 169 | 4.10E-62 | 247.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06094.t1 | O65155 | 48.0 | 173 | 81 | 2 | 3 | 175 | 2 | 165 | 5.6e-36 | 152.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06094.t1 | A0A072TUY7 | 93.7 | 175 | 5 | 1 | 1 | 175 | 1 | 169 | 2.9e-62 | 247.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene06094 | 0.811395 | 7.15E-51 | -1.69E-46 |
| MS.gene050799 | MS.gene06094 | 0.81008 | 1.38E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene06094 | 0.80869 | 2.74E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene06094 | 0.809613 | 1.74E-50 | -1.69E-46 |
| MS.gene055589 | MS.gene06094 | 0.804193 | 2.43E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene064321 | 0.821574 | 3.76E-53 | -1.69E-46 |
| MS.gene06094 | MS.gene065652 | 0.809376 | 1.95E-50 | -1.69E-46 |
| MS.gene06094 | MS.gene067697 | 0.804991 | 1.66E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene070005 | 0.806102 | 9.68E-50 | -1.69E-46 |
| MS.gene06094 | MS.gene072280 | 0.804815 | 1.80E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene073301 | 0.803253 | 3.81E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene07876 | 0.803594 | 3.24E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene20223 | 0.823858 | 1.10E-53 | -1.69E-46 |
| MS.gene06094 | MS.gene21536 | 0.818311 | 2.09E-52 | -1.69E-46 |
| MS.gene06094 | MS.gene22964 | 0.824951 | 6.11E-54 | -1.69E-46 |
| MS.gene06094 | MS.gene24623 | 0.813895 | 2.03E-51 | -1.69E-46 |
| MS.gene06094 | MS.gene24626 | 0.809466 | 1.87E-50 | -1.69E-46 |
| MS.gene06094 | MS.gene31445 | 0.813084 | 3.06E-51 | -1.69E-46 |
| MS.gene06094 | MS.gene35533 | 0.805639 | 1.21E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene36472 | 0.808921 | 2.44E-50 | -1.69E-46 |
| MS.gene06094 | MS.gene37027 | 0.82614 | 3.19E-54 | -1.69E-46 |
| MS.gene06094 | MS.gene37029 | 0.811563 | 6.58E-51 | -1.69E-46 |
| MS.gene06094 | MS.gene40709 | 0.806226 | 9.12E-50 | -1.69E-46 |
| MS.gene06094 | MS.gene40711 | 0.805879 | 1.08E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene47390 | 0.804522 | 2.07E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene47759 | 0.825292 | 5.08E-54 | -1.69E-46 |
| MS.gene06094 | MS.gene54656 | 0.806206 | 9.21E-50 | -1.69E-46 |
| MS.gene06094 | MS.gene55818 | 0.810038 | 1.41E-50 | -1.69E-46 |
| MS.gene06094 | MS.gene56414 | 0.803057 | 4.18E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene59269 | 0.813702 | 2.24E-51 | -1.69E-46 |
| MS.gene06094 | MS.gene60174 | 0.812573 | 3.96E-51 | -1.69E-46 |
| MS.gene06094 | MS.gene66047 | 0.809448 | 1.88E-50 | -1.69E-46 |
| MS.gene06094 | MS.gene69459 | 0.800207 | 1.61E-48 | -1.69E-46 |
| MS.gene06094 | MS.gene70656 | 0.803756 | 2.99E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene72347 | 0.815755 | 7.86E-52 | -1.69E-46 |
| MS.gene06094 | MS.gene74119 | 0.801273 | 9.73E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene76244 | 0.802405 | 5.70E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene76314 | 0.804729 | 1.88E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene76374 | 0.807462 | 5.00E-50 | -1.69E-46 |
| MS.gene06094 | MS.gene84300 | 0.80051 | 1.39E-48 | -1.69E-46 |
| MS.gene06094 | MS.gene88171 | 0.803231 | 3.85E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene95472 | 0.800464 | 1.42E-48 | -1.69E-46 |
| MS.gene06094 | MS.gene96762 | 0.828703 | 7.76E-55 | -1.69E-46 |
| MS.gene06094 | MS.gene98611 | 0.82485 | 6.46E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06094.t1 | MTR_8g099650 | 90.286 | 175 | 11 | 1 | 1 | 175 | 1 | 169 | 1.59e-96 | 276 |
| MS.gene06094.t1 | MTR_8g099650 | 91.096 | 146 | 7 | 1 | 1 | 146 | 1 | 140 | 1.82e-74 | 220 |
| MS.gene06094.t1 | MTR_3g096690 | 49.296 | 71 | 35 | 1 | 101 | 171 | 37 | 106 | 1.37e-19 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06094.t1 | AT4G10920 | 52.469 | 162 | 68 | 3 | 14 | 175 | 13 | 165 | 1.60e-49 | 157 |
| MS.gene06094.t1 | AT4G10920 | 52.469 | 162 | 68 | 3 | 14 | 175 | 13 | 165 | 1.60e-49 | 157 |
| MS.gene06094.t1 | AT5G09250 | 44.928 | 69 | 38 | 0 | 101 | 169 | 36 | 104 | 1.61e-19 | 79.3 |
| MS.gene06094.t1 | AT5G09250 | 46.032 | 63 | 34 | 0 | 106 | 168 | 44 | 106 | 3.84e-16 | 70.9 |
| MS.gene06094.t1 | AT5G09250 | 32.632 | 95 | 59 | 1 | 61 | 155 | 1 | 90 | 5.60e-15 | 67.8 |
| MS.gene06094.t1 | AT4G00980 | 31.138 | 167 | 98 | 3 | 9 | 175 | 19 | 168 | 1.06e-14 | 71.2 |
| MS.gene06094.t1 | AT5G09240 | 42.424 | 66 | 36 | 1 | 105 | 168 | 39 | 104 | 4.55e-13 | 62.8 |
| MS.gene06094.t1 | AT5G09250 | 47.826 | 46 | 24 | 0 | 101 | 146 | 36 | 81 | 3.36e-12 | 59.7 |
| MS.gene06094.t1 | AT5G09250 | 47.826 | 46 | 24 | 0 | 101 | 146 | 36 | 81 | 3.36e-12 | 59.7 |
Find 32 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACAAGCCATTCAGAAAA+AGG | 0.298415 | 4.2:-4181317 | MS.gene06094:CDS |
| TTCGATTCTTCCTTTGGTTT+CGG | 0.299411 | 4.2:+4184144 | None:intergenic |
| TGAGGCTTGCTTTCGAATCT+TGG | 0.308290 | 4.2:+4184069 | None:intergenic |
| TGTTTCTTCGATTCTTCCTT+TGG | 0.317008 | 4.2:+4184138 | None:intergenic |
| CGTCCATGTTTGATTCTTGA+AGG | 0.351225 | 4.2:+4184104 | None:intergenic |
| AAAGAGAAAGGTGACAATTC+AGG | 0.366183 | 4.2:-4183699 | MS.gene06094:CDS |
| AAAGCAAGCCTCAAATGAAT+TGG | 0.387647 | 4.2:-4184059 | MS.gene06094:CDS |
| AGCACTGTTTATGATGATTC+CGG | 0.391789 | 4.2:-4183866 | MS.gene06094:CDS |
| CTTGGTATAAAACTCTCTAA+TGG | 0.394017 | 4.2:+4183652 | None:intergenic |
| AAAGAACTTCCTTCTTCTAA+AGG | 0.401625 | 4.2:-4183623 | MS.gene06094:intron |
| TGAATGGCTTGTTCTATGTC+AGG | 0.401909 | 4.2:+4181325 | None:intergenic |
| TTGCTTTCGAATCTTGGATT+CGG | 0.412374 | 4.2:+4184075 | None:intergenic |
| AGGAAGTTCTTTGCCATCCT+TGG | 0.414306 | 4.2:+4183634 | None:intergenic |
| CTTTGAAGGGAGGCTGAGAT+AGG | 0.417924 | 4.2:+4184029 | None:intergenic |
| TTGCTTGACGAAGGCTTTGA+AGG | 0.429051 | 4.2:+4184015 | None:intergenic |
| AGAAGAAGAAGATAAACAAC+AGG | 0.453394 | 4.2:-4183915 | MS.gene06094:CDS |
| ACAACTTTACCTTTAGAAGA+AGG | 0.476393 | 4.2:+4183614 | None:intergenic |
| GCAGCAAGAACAACAGAAAG+AGG | 0.479297 | 4.2:-4183966 | MS.gene06094:CDS |
| GTTAAGATCCAATTCATTTG+AGG | 0.479566 | 4.2:+4184051 | None:intergenic |
| GTGACAATTCAGGATTTCAA+AGG | 0.497487 | 4.2:-4183689 | MS.gene06094:CDS |
| TGACAATTCAGGATTTCAAA+GGG | 0.528976 | 4.2:-4183688 | MS.gene06094:CDS |
| TTCAGGAATAAGTTTGACTC+AGG | 0.531614 | 4.2:-4181377 | MS.gene06094:intron |
| TTCGATGATTTGCTTGACGA+AGG | 0.545920 | 4.2:+4184006 | None:intergenic |
| TGCTTGACGAAGGCTTTGAA+GGG | 0.552385 | 4.2:+4184016 | None:intergenic |
| TTGACGAAGGCTTTGAAGGG+AGG | 0.568942 | 4.2:+4184019 | None:intergenic |
| TAAACAACAGGTTAAACAAG+AGG | 0.592127 | 4.2:-4183903 | MS.gene06094:CDS |
| ATGGATGACGCCGAAACCAA+AGG | 0.594413 | 4.2:-4184154 | MS.gene06094:CDS |
| CTCGCAGATGACTAGATCAC+CGG | 0.601997 | 4.2:+4183847 | None:intergenic |
| TAAGTTTGACTCAGGAGCAG+TGG | 0.602755 | 4.2:-4181369 | MS.gene06094:CDS |
| AAACAACAGGTTAAACAAGA+GGG | 0.619306 | 4.2:-4183902 | MS.gene06094:CDS |
| GATCCTTCAAGAATCAAACA+TGG | 0.657064 | 4.2:-4184107 | MS.gene06094:CDS |
| CGGTGATCTAGTCATCTGCG+AGG | 0.722262 | 4.2:-4183846 | MS.gene06094:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTTGAAAATGATAA+AGG | - | chr4.2:4182800-4182819 | MS.gene06094:intron | 10.0% |
| !!! | TTTTCATACAAAAAAAAATA+TGG | + | chr4.2:4182712-4182731 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTACTTTTCAT+TGG | - | chr4.2:4183421-4183440 | MS.gene06094:intron | 10.0% |
| !! | AATGTTTCTTAGATATTAAA+TGG | + | chr4.2:4183265-4183284 | None:intergenic | 15.0% |
| !! | GTCATATTATATAAAAGAAA+TGG | + | chr4.2:4182242-4182261 | None:intergenic | 15.0% |
| !! | TCATATATAATTTAGCAAAT+AGG | - | chr4.2:4183702-4183721 | MS.gene06094:CDS | 15.0% |
| !! | TTAATATCTAAGAAACATTA+GGG | - | chr4.2:4183266-4183285 | MS.gene06094:intron | 15.0% |
| !! | TTCTACCTATTTATAATAAA+AGG | + | chr4.2:4182777-4182796 | None:intergenic | 15.0% |
| !! | TTTAATATCTAAGAAACATT+AGG | - | chr4.2:4183265-4183284 | MS.gene06094:intron | 15.0% |
| !!! | AAACACCTTTTATTATAAAT+AGG | - | chr4.2:4182769-4182788 | MS.gene06094:intron | 15.0% |
| !!! | AAGTATATCTACTTTTAATA+TGG | - | chr4.2:4183056-4183075 | MS.gene06094:intron | 15.0% |
| !! | AAAGAAAAAAAACATGAGTA+TGG | - | chr4.2:4182947-4182966 | MS.gene06094:intron | 20.0% |
| !! | AATGCAGTTTCAAATAAATA+GGG | + | chr4.2:4182442-4182461 | None:intergenic | 20.0% |
| !! | AATTCTAATATTTGTGTTTC+AGG | - | chr4.2:4184063-4184082 | MS.gene06094:CDS | 20.0% |
| !! | AATTTATACAGTTTGAACTT+TGG | - | chr4.2:4183187-4183206 | MS.gene06094:intron | 20.0% |
| !! | AGACTAATTGATAGAAATTA+TGG | + | chr4.2:4181905-4181924 | None:intergenic | 20.0% |
| !! | ATTTCGATTCAAATGTTTAT+TGG | - | chr4.2:4183878-4183897 | MS.gene06094:CDS | 20.0% |
| !! | GAAACACAAATATTAGAATT+TGG | + | chr4.2:4184063-4184082 | None:intergenic | 20.0% |
| !! | TCTTGACAGAAATTATATAA+AGG | + | chr4.2:4182219-4182238 | None:intergenic | 20.0% |
| !! | TGTGCAAGTTAATAATAATT+TGG | + | chr4.2:4182109-4182128 | None:intergenic | 20.0% |
| !!! | ATAATATGACATTGATTTTC+AGG | - | chr4.2:4182252-4182271 | MS.gene06094:intron | 20.0% |
| !!! | ATCTACTTTTAATATGGTAT+TGG | - | chr4.2:4183062-4183081 | MS.gene06094:intron | 20.0% |
| !!! | ATTTTAATGCCAAACTTAAA+AGG | + | chr4.2:4183550-4183569 | None:intergenic | 20.0% |
| !!! | GCTAATTAGCTTAAATTTAA+CGG | + | chr4.2:4181971-4181990 | None:intergenic | 20.0% |
| !!! | GTTTTATCTATAACTTTTCA+CGG | + | chr4.2:4183847-4183866 | None:intergenic | 20.0% |
| !!! | TAAGTTCTAACTAGTAAAAT+TGG | + | chr4.2:4183476-4183495 | None:intergenic | 20.0% |
| ! | ACTACTCATACTATCATATA+GGG | + | chr4.2:4183631-4183650 | None:intergenic | 25.0% |
| ! | AGATTTCATCTTTCATTCTA+AGG | + | chr4.2:4182086-4182105 | None:intergenic | 25.0% |
| ! | ATAGTTACGTTCTATAATTG+AGG | - | chr4.2:4184030-4184049 | MS.gene06094:CDS | 25.0% |
| ! | ATTAGGGTTCAAAATAAGTT+GGG | - | chr4.2:4183282-4183301 | MS.gene06094:intron | 25.0% |
| ! | ATTTCTTGACAATAGAACTT+AGG | + | chr4.2:4182141-4182160 | None:intergenic | 25.0% |
| ! | ATTTGAAAATGATAAAGGCA+TGG | - | chr4.2:4182805-4182824 | MS.gene06094:intron | 25.0% |
| ! | CATGATAAAAATTATTCCAC+CGG | - | chr4.2:4183804-4183823 | MS.gene06094:intron | 25.0% |
| ! | CCAAAATAATAATGTTAACC+AGG | + | chr4.2:4181717-4181736 | None:intergenic | 25.0% |
| ! | CTTAATTTAGTGCTAAATTC+TGG | - | chr4.2:4183587-4183606 | MS.gene06094:intron | 25.0% |
| ! | GAAATCAATTCATGGAAAAA+GGG | - | chr4.2:4181686-4181705 | MS.gene06094:intron | 25.0% |
| ! | GAATGCAGTTTCAAATAAAT+AGG | + | chr4.2:4182443-4182462 | None:intergenic | 25.0% |
| ! | GAGAGTAAAAAATTACGAAA+CGG | + | chr4.2:4181638-4181657 | None:intergenic | 25.0% |
| ! | TACTACTCATACTATCATAT+AGG | + | chr4.2:4183632-4183651 | None:intergenic | 25.0% |
| ! | TAGTTACGTTCTATAATTGA+GGG | - | chr4.2:4184031-4184050 | MS.gene06094:CDS | 25.0% |
| ! | TCTTAATTAATACTCGATGT+GGG | - | chr4.2:4182552-4182571 | MS.gene06094:intron | 25.0% |
| ! | TGAAATCAATTCATGGAAAA+AGG | - | chr4.2:4181685-4181704 | MS.gene06094:intron | 25.0% |
| ! | TGAACAGAGTTAAGTAATAT+TGG | + | chr4.2:4183318-4183337 | None:intergenic | 25.0% |
| ! | TTAACGATGAAATCAATTCA+TGG | - | chr4.2:4181678-4181697 | MS.gene06094:intron | 25.0% |
| ! | TTGTCAAGAAATATCAAGAT+TGG | - | chr4.2:4182149-4182168 | MS.gene06094:intron | 25.0% |
| !! | ACGTAACTATGTGTTTTATA+AGG | + | chr4.2:4184020-4184039 | None:intergenic | 25.0% |
| !! | AGTAGATATACTTGTGATTT+TGG | + | chr4.2:4183049-4183068 | None:intergenic | 25.0% |
| !! | ATTGGATTAGAAACAGTTAA+AGG | - | chr4.2:4182167-4182186 | MS.gene06094:intron | 25.0% |
| !! | CCTGGTTAACATTATTATTT+TGG | - | chr4.2:4181714-4181733 | MS.gene06094:intron | 25.0% |
| !! | GCTTATATGAACCTTTAAAA+AGG | + | chr4.2:4182643-4182662 | None:intergenic | 25.0% |
| !! | TTATTTGAAACTGCATTCTA+AGG | - | chr4.2:4182445-4182464 | MS.gene06094:intron | 25.0% |
| AAACAACAGGTTAAACAAGA+GGG | - | chr4.2:4181555-4181574 | MS.gene06094:intron | 30.0% | |
| AAAGAACTTCCTTCTTCTAA+AGG | - | chr4.2:4181834-4181853 | MS.gene06094:intron | 30.0% | |
| AAGCTAATTAGCAAAAAGCA+AGG | - | chr4.2:4181979-4181998 | MS.gene06094:intron | 30.0% | |
| AAGTTCTTGAGTCTCTAATT+TGG | + | chr4.2:4182863-4182882 | None:intergenic | 30.0% | |
| ACCAAGAAATTCAGAAAAGA+TGG | - | chr4.2:4183732-4183751 | MS.gene06094:intron | 30.0% | |
| AGAACAATAGAGAGAAGAAA+GGG | - | chr4.2:4182363-4182382 | MS.gene06094:intron | 30.0% | |
| AGAAGAAGAAGATAAACAAC+AGG | - | chr4.2:4181542-4181561 | MS.gene06094:intron | 30.0% | |
| ATAAAAATTATTCCACCGGT+TGG | - | chr4.2:4183808-4183827 | MS.gene06094:intron | 30.0% | |
| ATAACATGACTACATGAGTA+TGG | - | chr4.2:4182914-4182933 | MS.gene06094:intron | 30.0% | |
| ATATTAAATGGAGCACAACA+AGG | + | chr4.2:4183253-4183272 | None:intergenic | 30.0% | |
| CACATCGAGTATTAATTAAG+AGG | + | chr4.2:4182553-4182572 | None:intergenic | 30.0% | |
| CATTAGGGTTCAAAATAAGT+TGG | - | chr4.2:4183281-4183300 | MS.gene06094:intron | 30.0% | |
| CTACTCATACTATCATATAG+GGG | + | chr4.2:4183630-4183649 | None:intergenic | 30.0% | |
| CTCTTAATTAATACTCGATG+TGG | - | chr4.2:4182551-4182570 | MS.gene06094:intron | 30.0% | |
| CTTGGTATAAAACTCTCTAA+TGG | + | chr4.2:4181808-4181827 | None:intergenic | 30.0% | |
| GACACGATGATCTATATATT+TGG | - | chr4.2:4182888-4182907 | MS.gene06094:intron | 30.0% | |
| GGAAACATCTTATGAACTTA+TGG | + | chr4.2:4181884-4181903 | None:intergenic | 30.0% | |
| GTTAAGATCCAATTCATTTG+AGG | + | chr4.2:4181409-4181428 | None:intergenic | 30.0% | |
| GTTAAGTAATATTGGCAACA+AGG | + | chr4.2:4183310-4183329 | None:intergenic | 30.0% | |
| TAAACAACAGGTTAAACAAG+AGG | - | chr4.2:4181554-4181573 | MS.gene06094:intron | 30.0% | |
| TAGTTAGAACTTAGATGTCT+CGG | - | chr4.2:4183483-4183502 | MS.gene06094:intron | 30.0% | |
| TATTAAATGGAGCACAACAA+GGG | + | chr4.2:4183252-4183271 | None:intergenic | 30.0% | |
| TCAGATTTGTCATTGTTGAT+AGG | + | chr4.2:4182685-4182704 | None:intergenic | 30.0% | |
| TCTTAAAAGCTAGCTATCAA+GGG | - | chr4.2:4182515-4182534 | MS.gene06094:intron | 30.0% | |
| TGAATCGAAATCTCTGTTAA+TGG | + | chr4.2:4183869-4183888 | None:intergenic | 30.0% | |
| TGACAATTCAGGATTTCAAA+GGG | - | chr4.2:4181769-4181788 | MS.gene06094:intron | 30.0% | |
| TTAAAAGGAAGTTCTCAACT+GGG | + | chr4.2:4183535-4183554 | None:intergenic | 30.0% | |
| TTAGGGTTCAAAATAAGTTG+GGG | - | chr4.2:4183283-4183302 | MS.gene06094:intron | 30.0% | |
| ! | AAAATGATAAAGGCATGGAA+TGG | - | chr4.2:4182810-4182829 | MS.gene06094:intron | 30.0% |
| ! | ACAACTTTACCTTTAGAAGA+AGG | + | chr4.2:4181846-4181865 | None:intergenic | 30.0% |
| ! | ACCATCTTTTCTGAATTTCT+TGG | + | chr4.2:4183736-4183755 | None:intergenic | 30.0% |
| ! | ATCATAAACAGTGCTTTTGT+TGG | + | chr4.2:4181586-4181605 | None:intergenic | 30.0% |
| ! | GAATTGATTTCATCGTTAAC+CGG | + | chr4.2:4181677-4181696 | None:intergenic | 30.0% |
| ! | TGAACCTTTAAAAAGGAACA+CGG | + | chr4.2:4182636-4182655 | None:intergenic | 30.0% |
| !! | CATTAGAGAGTTTTATACCA+AGG | - | chr4.2:4181806-4181825 | MS.gene06094:intron | 30.0% |
| !!! | AAGATGGTTAGTGTTGTTTT+AGG | - | chr4.2:4183748-4183767 | MS.gene06094:intron | 30.0% |
| !!! | TGAGAACTTCCTTTTAAGTT+TGG | - | chr4.2:4183538-4183557 | MS.gene06094:intron | 30.0% |
| !!! | TTTTAATATGGTATTGGCCT+TGG | - | chr4.2:4183068-4183087 | MS.gene06094:intron | 30.0% |
| AAAGAGAAAGGTGACAATTC+AGG | - | chr4.2:4181758-4181777 | MS.gene06094:intron | 35.0% | |
| AAAGCAAGCCTCAAATGAAT+TGG | - | chr4.2:4181398-4181417 | MS.gene06094:intron | 35.0% | |
| AAATAGGGAAGCTATGCAAT+TGG | + | chr4.2:4182427-4182446 | None:intergenic | 35.0% | |
| AAATTTAACGGCCAAGGATA+AGG | + | chr4.2:4181959-4181978 | None:intergenic | 35.0% | |
| AATTTAACGGCCAAGGATAA+GGG | + | chr4.2:4181958-4181977 | None:intergenic | 35.0% | |
| AGAACAAGCCATTCAGAAAA+AGG | - | chr4.2:4184140-4184159 | MS.gene06094:CDS | 35.0% | |
| AGCACTGTTTATGATGATTC+CGG | - | chr4.2:4181591-4181610 | MS.gene06094:intron | 35.0% | |
| ATTAGCAAAAAGCAAGGCAA+CGG | - | chr4.2:4181985-4182004 | MS.gene06094:intron | 35.0% | |
| CAGAAAGAGGAAAAAGAAGA+AGG | - | chr4.2:4181504-4181523 | MS.gene06094:intron | 35.0% | |
| CATACTATCATATAGGGGAA+GGG | + | chr4.2:4183625-4183644 | None:intergenic | 35.0% | |
| CCACCTATAGTATATAACCA+AGG | + | chr4.2:4183088-4183107 | None:intergenic | 35.0% | |
| CCTTGGTTATATACTATAGG+TGG | - | chr4.2:4183085-4183104 | MS.gene06094:intron | 35.0% | |
| CTCTTAAAAGCTAGCTATCA+AGG | - | chr4.2:4182514-4182533 | MS.gene06094:intron | 35.0% | |
| CTTAAAAGCTAGCTATCAAG+GGG | - | chr4.2:4182516-4182535 | MS.gene06094:intron | 35.0% | |
| CTTAAAAGGAAGTTCTCAAC+TGG | + | chr4.2:4183536-4183555 | None:intergenic | 35.0% | |
| GAGAACAATAGAGAGAAGAA+AGG | - | chr4.2:4182362-4182381 | MS.gene06094:intron | 35.0% | |
| GAGCTTTCATGATTCATGTA+AGG | + | chr4.2:4183360-4183379 | None:intergenic | 35.0% | |
| GATCCTTCAAGAATCAAACA+TGG | - | chr4.2:4181350-4181369 | MS.gene06094:CDS | 35.0% | |
| GTGACAATTCAGGATTTCAA+AGG | - | chr4.2:4181768-4181787 | MS.gene06094:intron | 35.0% | |
| TAGCATTTCTCATGGATGTT+TGG | - | chr4.2:4183145-4183164 | MS.gene06094:intron | 35.0% | |
| TAGCTTAAATTTAACGGCCA+AGG | + | chr4.2:4181965-4181984 | None:intergenic | 35.0% | |
| TCAGCTTGGAAAAAAGAGAA+AGG | - | chr4.2:4181746-4181765 | MS.gene06094:intron | 35.0% | |
| TCATACTATCATATAGGGGA+AGG | + | chr4.2:4183626-4183645 | None:intergenic | 35.0% | |
| TCGGATTAAGGATGTTGATA+GGG | + | chr4.2:4182599-4182618 | None:intergenic | 35.0% | |
| TCTCACTTTAGCATTTCTCA+TGG | - | chr4.2:4183137-4183156 | MS.gene06094:intron | 35.0% | |
| TGGAATGTGACAGTTTACAT+TGG | - | chr4.2:4182393-4182412 | MS.gene06094:intron | 35.0% | |
| TGTTTCTTCGATTCTTCCTT+TGG | + | chr4.2:4181322-4181341 | None:intergenic | 35.0% | |
| TTCAGGAATAAGTTTGACTC+AGG | - | chr4.2:4184080-4184099 | MS.gene06094:CDS | 35.0% | |
| TTCGGATTAAGGATGTTGAT+AGG | + | chr4.2:4182600-4182619 | None:intergenic | 35.0% | |
| TTGCTTTCGAATCTTGGATT+CGG | + | chr4.2:4181385-4181404 | None:intergenic | 35.0% | |
| ! | CAAACCGTGTTCCTTTTTAA+AGG | - | chr4.2:4182629-4182648 | MS.gene06094:intron | 35.0% |
| ! | CTGGCTTATTTCTCACAATA+GGG | - | chr4.2:4182485-4182504 | MS.gene06094:intron | 35.0% |
| ! | TAGGGTTCAAAATAAGTTGG+GGG | - | chr4.2:4183284-4183303 | MS.gene06094:intron | 35.0% |
| ! | TGGCCTTGGTTATATACTAT+AGG | - | chr4.2:4183082-4183101 | MS.gene06094:intron | 35.0% |
| ! | TTCGATTCTTCCTTTGGTTT+CGG | + | chr4.2:4181316-4181335 | None:intergenic | 35.0% |
| !! | AGAGAGTTTTATACCAAGGA+TGG | - | chr4.2:4181810-4181829 | MS.gene06094:intron | 35.0% |
| !! | TGTAGAAGCATTTCGGATTA+AGG | + | chr4.2:4182611-4182630 | None:intergenic | 35.0% |
| !!! | ATGGTTAGTGTTGTTTTAGG+TGG | - | chr4.2:4183751-4183770 | MS.gene06094:intron | 35.0% |
| !!! | TTTGGTTTTGCATTTCAGCT+TGG | - | chr4.2:4181732-4181751 | MS.gene06094:intron | 35.0% |
| AGAGAAGAAAGGGATTTGAG+TGG | - | chr4.2:4182373-4182392 | MS.gene06094:intron | 40.0% | |
| CATGGAAAAAGGGTTATTCC+TGG | - | chr4.2:4181696-4181715 | MS.gene06094:intron | 40.0% | |
| CGTCCATGTTTGATTCTTGA+AGG | + | chr4.2:4181356-4181375 | None:intergenic | 40.0% | |
| GCCAAATTGATCTGCTTTGT+TGG | - | chr4.2:4183670-4183689 | MS.gene06094:CDS | 40.0% | |
| GCCAACAAAGCAGATCAATT+TGG | + | chr4.2:4183674-4183693 | None:intergenic | 40.0% | |
| GTAGTTATCGTTTCTGTCTG+AGG | - | chr4.2:4182996-4183015 | MS.gene06094:intron | 40.0% | |
| TCCAAACAAACCCTTATCCT+TGG | - | chr4.2:4181945-4181964 | MS.gene06094:intron | 40.0% | |
| ! | ACGTGACTCCTTTTTCTGAA+TGG | + | chr4.2:4184151-4184170 | None:intergenic | 40.0% |
| ! | GCTGGCTTATTTCTCACAAT+AGG | - | chr4.2:4182484-4182503 | MS.gene06094:intron | 40.0% |
| ! | GTCAGGCACAATTTTCTTGA+AGG | + | chr4.2:4184118-4184137 | None:intergenic | 40.0% |
| ! | TTAAGGATGTTGATAGGGAC+CGG | + | chr4.2:4182594-4182613 | None:intergenic | 40.0% |
| !! | CACGGTTTGTAGAAGCATTT+CGG | + | chr4.2:4182618-4182637 | None:intergenic | 40.0% |
| !! | GATTTTCAGGAGACATCTGA+TGG | - | chr4.2:4182265-4182284 | MS.gene06094:intron | 40.0% |
| !! | TGAATGGCTTGTTCTATGTC+AGG | + | chr4.2:4184135-4184154 | None:intergenic | 40.0% |
| !! | TTCGATGATTTGCTTGACGA+AGG | + | chr4.2:4181454-4181473 | None:intergenic | 40.0% |
| AGGAAGTTCTTTGCCATCCT+TGG | + | chr4.2:4181826-4181845 | None:intergenic | 45.0% | |
| AGGAGACATCTGATGGAAAC+TGG | - | chr4.2:4182272-4182291 | MS.gene06094:intron | 45.0% | |
| ATACAACCAACTCCGTGTAG+TGG | - | chr4.2:4183952-4183971 | MS.gene06094:CDS | 45.0% | |
| CTAAGCTTTCTCCCACTACA+CGG | + | chr4.2:4183967-4183986 | None:intergenic | 45.0% | |
| GCAGCAAGAACAACAGAAAG+AGG | - | chr4.2:4181491-4181510 | MS.gene06094:intron | 45.0% | |
| GCTATCAAGGGGTAAGAAAC+AGG | - | chr4.2:4182527-4182546 | MS.gene06094:intron | 45.0% | |
| GCTCAAGAGTCATGAGAAGA+AGG | - | chr4.2:4182733-4182752 | MS.gene06094:intron | 45.0% | |
| TAAGTTTGACTCAGGAGCAG+TGG | - | chr4.2:4184088-4184107 | MS.gene06094:CDS | 45.0% | |
| TACAACCAACTCCGTGTAGT+GGG | - | chr4.2:4183953-4183972 | MS.gene06094:CDS | 45.0% | |
| TTGATAGGGACCGGTATTGT+GGG | + | chr4.2:4182585-4182604 | None:intergenic | 45.0% | |
| ! | GCCAAGGATAAGGGTTTGTT+TGG | + | chr4.2:4181949-4181968 | None:intergenic | 45.0% |
| ! | TGAGGCTTGCTTTCGAATCT+TGG | + | chr4.2:4181391-4181410 | None:intergenic | 45.0% |
| ! | TTATTCCACCGGTTGGAGTT+AGG | - | chr4.2:4183815-4183834 | MS.gene06094:intron | 45.0% |
| ! | TTGCTTGACGAAGGCTTTGA+AGG | + | chr4.2:4181445-4181464 | None:intergenic | 45.0% |
| !! | TGCTTGACGAAGGCTTTGAA+GGG | + | chr4.2:4181444-4181463 | None:intergenic | 45.0% |
| AGATGTCTCGGCGTTGCAAT+TGG | - | chr4.2:4183495-4183514 | MS.gene06094:intron | 50.0% | |
| AGGGAAGCTATGCAATTGGC+AGG | + | chr4.2:4182423-4182442 | None:intergenic | 50.0% | |
| ATGGATGACGCCGAAACCAA+AGG | - | chr4.2:4181303-4181322 | MS.gene06094:CDS | 50.0% | |
| CTCGCAGATGACTAGATCAC+CGG | + | chr4.2:4181613-4181632 | None:intergenic | 50.0% | |
| GGCACAACTATGACACAAGC+TGG | - | chr4.2:4182466-4182485 | MS.gene06094:intron | 50.0% | |
| GGGAAGCTATGCAATTGGCA+GGG | + | chr4.2:4182422-4182441 | None:intergenic | 50.0% | |
| GGTATCCACCTAACTCCAAC+CGG | + | chr4.2:4183826-4183845 | None:intergenic | 50.0% | |
| TAGGTGGTCTGTGCATACAG+CGG | - | chr4.2:4183767-4183786 | MS.gene06094:intron | 50.0% | |
| TGATAGGGACCGGTATTGTG+GGG | + | chr4.2:4182584-4182603 | None:intergenic | 50.0% | |
| TTTCTCCCACTACACGGAGT+TGG | + | chr4.2:4183961-4183980 | None:intergenic | 50.0% | |
| ! | CTTTGAAGGGAGGCTGAGAT+AGG | + | chr4.2:4181431-4181450 | None:intergenic | 50.0% |
| ! | GTTGATAGGGACCGGTATTG+TGG | + | chr4.2:4182586-4182605 | None:intergenic | 50.0% |
| !! | TTGACGAAGGCTTTGAAGGG+AGG | + | chr4.2:4181441-4181460 | None:intergenic | 50.0% |
| ATCCACCTAACTCCAACCGG+TGG | + | chr4.2:4183823-4183842 | None:intergenic | 55.0% | |
| CGGTGATCTAGTCATCTGCG+AGG | - | chr4.2:4181611-4181630 | MS.gene06094:intron | 55.0% | |
| CTCTTTCGCACGCACTTCAC+CGG | - | chr4.2:4181655-4181674 | MS.gene06094:intron | 55.0% | |
| GGGACTTGACCCCACAATAC+CGG | - | chr4.2:4182572-4182591 | MS.gene06094:intron | 55.0% | |
| ! | TTCCACCGGTTGGAGTTAGG+TGG | - | chr4.2:4183818-4183837 | MS.gene06094:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 4181303 | 4184176 | 4181303 | ID=MS.gene06094 |
| chr4.2 | mRNA | 4181303 | 4184176 | 4181303 | ID=MS.gene06094.t1;Parent=MS.gene06094 |
| chr4.2 | exon | 4183847 | 4184176 | 4183847 | ID=MS.gene06094.t1.exon1;Parent=MS.gene06094.t1 |
| chr4.2 | CDS | 4183847 | 4184176 | 4183847 | ID=cds.MS.gene06094.t1;Parent=MS.gene06094.t1 |
| chr4.2 | exon | 4183624 | 4183729 | 4183624 | ID=MS.gene06094.t1.exon2;Parent=MS.gene06094.t1 |
| chr4.2 | CDS | 4183624 | 4183729 | 4183624 | ID=cds.MS.gene06094.t1;Parent=MS.gene06094.t1 |
| chr4.2 | exon | 4181303 | 4181394 | 4181303 | ID=MS.gene06094.t1.exon3;Parent=MS.gene06094.t1 |
| chr4.2 | CDS | 4181303 | 4181394 | 4181303 | ID=cds.MS.gene06094.t1;Parent=MS.gene06094.t1 |
| Gene Sequence |
| Protein sequence |
