Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59707.t1 | XP_003614560.1 | 98 | 391 | 7 | 1 | 1 | 391 | 1 | 390 | 6.00E-223 | 783.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59707.t1 | Q65XS5 | 35.4 | 297 | 141 | 9 | 124 | 373 | 85 | 377 | 7.6e-41 | 169.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59707.t1 | G7JZH3 | 98.0 | 391 | 7 | 1 | 1 | 391 | 1 | 390 | 4.3e-223 | 783.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene00579 | MS.gene59707 | PPI |
| MS.gene002006 | MS.gene59707 | PPI |
| MS.gene047241 | MS.gene59707 | PPI |
| MS.gene072101 | MS.gene59707 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59707.t1 | MTR_5g055480 | 97.954 | 391 | 7 | 1 | 1 | 391 | 1 | 390 | 0.0 | 793 |
| MS.gene59707.t1 | MTR_1g110290 | 68.367 | 392 | 120 | 3 | 1 | 391 | 5 | 393 | 0.0 | 557 |
| MS.gene59707.t1 | MTR_6g083830 | 54.436 | 417 | 164 | 5 | 1 | 391 | 3 | 419 | 4.28e-162 | 461 |
| MS.gene59707.t1 | MTR_5g006920 | 50.355 | 423 | 176 | 4 | 1 | 391 | 1 | 421 | 4.92e-151 | 433 |
| MS.gene59707.t1 | MTR_5g006930 | 53.046 | 394 | 174 | 4 | 1 | 391 | 1 | 386 | 9.59e-147 | 421 |
| MS.gene59707.t1 | MTR_3g104840 | 48.780 | 410 | 172 | 8 | 1 | 391 | 3 | 393 | 4.72e-134 | 389 |
| MS.gene59707.t1 | MTR_1g016880 | 50.145 | 345 | 164 | 3 | 40 | 382 | 28 | 366 | 4.01e-127 | 371 |
| MS.gene59707.t1 | MTR_2g005350 | 53.595 | 306 | 140 | 1 | 86 | 389 | 131 | 436 | 9.83e-124 | 365 |
| MS.gene59707.t1 | MTR_8g015500 | 52.787 | 305 | 142 | 2 | 89 | 391 | 109 | 413 | 1.63e-117 | 348 |
| MS.gene59707.t1 | MTR_3g108740 | 41.390 | 331 | 156 | 8 | 82 | 382 | 49 | 371 | 2.56e-73 | 233 |
| MS.gene59707.t1 | MTR_1g009960 | 40.063 | 317 | 163 | 5 | 92 | 384 | 79 | 392 | 1.53e-70 | 227 |
| MS.gene59707.t1 | MTR_4g127550 | 39.339 | 333 | 164 | 7 | 82 | 384 | 63 | 387 | 9.80e-70 | 224 |
| MS.gene59707.t1 | MTR_2g037600 | 42.105 | 285 | 139 | 5 | 123 | 384 | 105 | 386 | 5.28e-65 | 212 |
| MS.gene59707.t1 | MTR_2g037620 | 39.446 | 289 | 140 | 5 | 123 | 384 | 97 | 377 | 5.31e-65 | 212 |
| MS.gene59707.t1 | MTR_1g009960 | 41.573 | 267 | 147 | 3 | 92 | 351 | 79 | 343 | 8.83e-64 | 209 |
| MS.gene59707.t1 | MTR_2g024120 | 36.909 | 317 | 155 | 9 | 108 | 382 | 46 | 359 | 3.54e-53 | 181 |
| MS.gene59707.t1 | MTR_8g094180 | 36.246 | 309 | 144 | 9 | 123 | 382 | 55 | 359 | 3.85e-53 | 181 |
| MS.gene59707.t1 | MTR_8g094180 | 37.218 | 266 | 132 | 6 | 123 | 356 | 55 | 317 | 7.22e-50 | 171 |
| MS.gene59707.t1 | MTR_3g106930 | 34.969 | 326 | 192 | 9 | 78 | 389 | 55 | 374 | 4.98e-44 | 157 |
| MS.gene59707.t1 | MTR_1g048320 | 38.889 | 288 | 145 | 10 | 123 | 389 | 64 | 341 | 2.08e-38 | 141 |
| MS.gene59707.t1 | MTR_2g087610 | 34.783 | 299 | 151 | 11 | 124 | 389 | 78 | 365 | 2.33e-37 | 139 |
| MS.gene59707.t1 | MTR_1g031060 | 37.931 | 290 | 147 | 9 | 123 | 389 | 80 | 359 | 2.96e-37 | 138 |
| MS.gene59707.t1 | MTR_1g031080 | 35.484 | 248 | 130 | 8 | 165 | 389 | 49 | 289 | 4.75e-30 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59707.t1 | AT1G68390 | 64.309 | 311 | 107 | 3 | 85 | 391 | 98 | 408 | 7.98e-154 | 440 |
| MS.gene59707.t1 | AT1G10280 | 47.475 | 396 | 179 | 7 | 22 | 389 | 16 | 410 | 4.81e-128 | 375 |
| MS.gene59707.t1 | AT5G11730 | 54.167 | 312 | 141 | 2 | 80 | 389 | 73 | 384 | 4.28e-127 | 371 |
| MS.gene59707.t1 | AT1G73810 | 49.024 | 410 | 183 | 7 | 1 | 389 | 12 | 416 | 3.39e-126 | 370 |
| MS.gene59707.t1 | AT1G51770 | 52.647 | 340 | 158 | 3 | 54 | 391 | 54 | 392 | 4.34e-126 | 369 |
| MS.gene59707.t1 | AT1G68380 | 50.815 | 368 | 167 | 7 | 30 | 390 | 31 | 391 | 5.49e-124 | 363 |
| MS.gene59707.t1 | AT5G25970 | 51.572 | 318 | 149 | 3 | 77 | 389 | 68 | 385 | 3.49e-120 | 353 |
| MS.gene59707.t1 | AT5G25970 | 51.572 | 318 | 149 | 3 | 77 | 389 | 68 | 385 | 3.49e-120 | 353 |
| MS.gene59707.t1 | AT5G25970 | 51.572 | 318 | 149 | 3 | 77 | 389 | 68 | 385 | 3.49e-120 | 353 |
| MS.gene59707.t1 | AT3G21310 | 48.225 | 338 | 168 | 3 | 54 | 389 | 49 | 381 | 7.28e-118 | 348 |
| MS.gene59707.t1 | AT3G21310 | 48.225 | 338 | 168 | 3 | 54 | 389 | 49 | 381 | 7.28e-118 | 348 |
| MS.gene59707.t1 | AT1G10880 | 52.759 | 290 | 135 | 2 | 98 | 386 | 93 | 381 | 2.56e-114 | 339 |
| MS.gene59707.t1 | AT1G51770 | 47.941 | 340 | 147 | 4 | 54 | 391 | 54 | 365 | 6.42e-109 | 325 |
| MS.gene59707.t1 | AT5G16170 | 42.971 | 377 | 190 | 4 | 32 | 389 | 37 | 407 | 2.66e-108 | 324 |
| MS.gene59707.t1 | AT4G30060 | 39.329 | 328 | 160 | 7 | 84 | 382 | 70 | 387 | 2.42e-68 | 221 |
| MS.gene59707.t1 | AT4G30060 | 39.329 | 328 | 160 | 7 | 84 | 382 | 70 | 387 | 2.42e-68 | 221 |
| MS.gene59707.t1 | AT2G19160 | 38.066 | 331 | 168 | 7 | 84 | 386 | 67 | 388 | 9.46e-68 | 219 |
| MS.gene59707.t1 | AT2G19160 | 38.066 | 331 | 168 | 7 | 84 | 386 | 67 | 388 | 9.46e-68 | 219 |
| MS.gene59707.t1 | AT4G25870 | 39.521 | 334 | 172 | 7 | 78 | 386 | 54 | 382 | 9.70e-68 | 219 |
| MS.gene59707.t1 | AT4G31350 | 41.034 | 290 | 148 | 4 | 123 | 391 | 88 | 375 | 1.57e-67 | 218 |
| MS.gene59707.t1 | AT4G31350 | 41.034 | 290 | 148 | 4 | 123 | 391 | 88 | 375 | 1.57e-67 | 218 |
| MS.gene59707.t1 | AT4G31350 | 41.034 | 290 | 148 | 4 | 123 | 391 | 88 | 375 | 1.57e-67 | 218 |
| MS.gene59707.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 9.29e-64 | 209 |
| MS.gene59707.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 9.29e-64 | 209 |
| MS.gene59707.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 9.29e-64 | 209 |
| MS.gene59707.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 9.29e-64 | 209 |
| MS.gene59707.t1 | AT5G57270 | 39.241 | 316 | 164 | 5 | 96 | 386 | 69 | 381 | 9.29e-64 | 209 |
| MS.gene59707.t1 | AT3G21310 | 48.558 | 208 | 101 | 2 | 53 | 259 | 48 | 250 | 5.54e-63 | 203 |
| MS.gene59707.t1 | AT4G31350 | 40.000 | 290 | 146 | 5 | 123 | 391 | 88 | 370 | 2.06e-62 | 205 |
| MS.gene59707.t1 | AT5G14550 | 36.364 | 308 | 148 | 8 | 120 | 383 | 61 | 364 | 3.89e-54 | 183 |
| MS.gene59707.t1 | AT5G14550 | 36.246 | 309 | 149 | 8 | 119 | 383 | 60 | 364 | 4.19e-54 | 183 |
| MS.gene59707.t1 | AT5G14550 | 37.884 | 293 | 142 | 9 | 120 | 381 | 61 | 344 | 1.48e-53 | 181 |
| MS.gene59707.t1 | AT1G11940 | 36.076 | 316 | 154 | 11 | 109 | 382 | 61 | 370 | 2.38e-51 | 176 |
| MS.gene59707.t1 | AT1G62305 | 36.246 | 309 | 149 | 10 | 116 | 382 | 62 | 364 | 2.75e-51 | 176 |
| MS.gene59707.t1 | AT5G25330 | 34.574 | 376 | 209 | 14 | 30 | 389 | 5 | 359 | 9.69e-49 | 169 |
| MS.gene59707.t1 | AT5G14550 | 38.062 | 289 | 142 | 10 | 120 | 383 | 61 | 337 | 9.89e-48 | 166 |
| MS.gene59707.t1 | AT3G52060 | 35.740 | 277 | 161 | 8 | 123 | 389 | 74 | 343 | 1.23e-47 | 166 |
| MS.gene59707.t1 | AT1G62305 | 42.466 | 219 | 99 | 6 | 116 | 312 | 62 | 275 | 1.75e-46 | 162 |
| MS.gene59707.t1 | AT1G11940 | 45.833 | 192 | 95 | 6 | 109 | 296 | 61 | 247 | 3.11e-45 | 157 |
| MS.gene59707.t1 | AT1G62305 | 33.010 | 309 | 135 | 10 | 116 | 382 | 62 | 340 | 3.45e-38 | 140 |
| MS.gene59707.t1 | AT5G22070 | 34.667 | 300 | 151 | 12 | 124 | 389 | 71 | 359 | 3.77e-37 | 138 |
| MS.gene59707.t1 | AT4G32290 | 35.417 | 288 | 160 | 7 | 124 | 389 | 93 | 376 | 1.71e-34 | 131 |
Find 75 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGCCTTTAGCTCCTCTA+TGG | 0.278504 | 5.4:-43816677 | MS.gene59707:CDS |
| AATAAATTCACTAACCTTAC+TGG | 0.284629 | 5.4:+43816545 | None:intergenic |
| TCTGGTCTCACATATTTAAC+TGG | 0.301424 | 5.4:+43814588 | None:intergenic |
| TTCCATTATACTTACATGTT+TGG | 0.321516 | 5.4:+43814532 | None:intergenic |
| AAAGGATATTCATCTATCTT+AGG | 0.344852 | 5.4:+43816744 | None:intergenic |
| AACCAAACATGTAAGTATAA+TGG | 0.354495 | 5.4:-43814534 | MS.gene59707:CDS |
| AAATTCTTCAAAGGGCATAA+AGG | 0.387212 | 5.4:-43816651 | MS.gene59707:CDS |
| GTTTATAAGTGCATGACCTT+TGG | 0.392410 | 5.4:+43814435 | None:intergenic |
| AGGCTGGAATCAAATACTAT+TGG | 0.404126 | 5.4:+43816864 | None:intergenic |
| ATGTTTGTTATTTGTTTGCT+AGG | 0.408942 | 5.4:-43814500 | MS.gene59707:CDS |
| GTTTGCAAGCAGGCGACGCT+CGG | 0.415731 | 5.4:+43815016 | None:intergenic |
| AAACTCAGACAATGGAGAAA+AGG | 0.424464 | 5.4:-43814813 | MS.gene59707:CDS |
| AATTCTTCAAAGGGCATAAA+GGG | 0.434327 | 5.4:-43816650 | MS.gene59707:CDS |
| GAAGTTTGACTTGGGTTGAC+TGG | 0.435516 | 5.4:-43814629 | MS.gene59707:CDS |
| TATAATGCAGAAAGTAGAAT+GGG | 0.436466 | 5.4:-43815060 | MS.gene59707:intron |
| AACTTAATGCTAACAAAAGT+TGG | 0.443687 | 5.4:+43814672 | None:intergenic |
| AGGGTCTCAGTGGTTTGAAA+TGG | 0.444264 | 5.4:-43814793 | MS.gene59707:CDS |
| TGAAAACCGGGTAATATGTT+CGG | 0.445181 | 5.4:+43814739 | None:intergenic |
| AACTCAGACAATGGAGAAAA+GGG | 0.452092 | 5.4:-43814812 | MS.gene59707:CDS |
| CGCGTCCAACTGAACTTGCC+TGG | 0.457072 | 5.4:+43814868 | None:intergenic |
| GTGTGATACCACATGCTAGA+AGG | 0.467681 | 5.4:+43816982 | None:intergenic |
| GCTCATGAGGTTTGCTCCAA+AGG | 0.468695 | 5.4:-43814451 | MS.gene59707:CDS |
| ACTTGGGTTGACTGGTCAAA+GGG | 0.471540 | 5.4:-43814621 | MS.gene59707:CDS |
| GTATTTGATTCCAGCCTCAA+TGG | 0.471892 | 5.4:-43816858 | MS.gene59707:CDS |
| TGAGTGATGAAGAATTGTTA+TGG | 0.473976 | 5.4:-43816782 | MS.gene59707:CDS |
| CTGATATGAGAACAAATCGT+TGG | 0.474721 | 5.4:+43814973 | None:intergenic |
| GTGGAGAGTCCTGTGTTTCA+TGG | 0.483852 | 5.4:-43816579 | MS.gene59707:CDS |
| CGAGAAGCGCGTTTGCAAGC+AGG | 0.487978 | 5.4:+43815006 | None:intergenic |
| TTGAAGAATTTCTCCCATAG+AGG | 0.489698 | 5.4:+43816663 | None:intergenic |
| TTCTCCCATAGAGGAGCTAA+AGG | 0.493380 | 5.4:+43816672 | None:intergenic |
| GACTTGGGTTGACTGGTCAA+AGG | 0.498955 | 5.4:-43814622 | MS.gene59707:CDS |
| ACTTCAGAACCATTGTAAGA+TGG | 0.502479 | 5.4:+43816600 | None:intergenic |
| CTAGCATGTGGTATCACACT+TGG | 0.505414 | 5.4:-43816978 | MS.gene59707:CDS |
| CTCACATATTTAACTGGGTG+TGG | 0.508350 | 5.4:+43814594 | None:intergenic |
| AGCCTCAATGGTAGTCATGA+AGG | 0.515851 | 5.4:-43816846 | MS.gene59707:CDS |
| TACAAATAGAAGTTTGACTT+GGG | 0.522087 | 5.4:-43814637 | MS.gene59707:CDS |
| AATACTATTGGTTGGCGTAA+CGG | 0.522626 | 5.4:+43816876 | None:intergenic |
| ATATAATGCAGAAAGTAGAA+TGG | 0.524034 | 5.4:-43815061 | MS.gene59707:intron |
| TATGGGAGAAATTCTTCAAA+GGG | 0.525258 | 5.4:-43816659 | MS.gene59707:CDS |
| CTACGTCATGGCTTACGACC+AGG | 0.528541 | 5.4:-43814886 | MS.gene59707:CDS |
| TACGACCAGGCAAGTTCAGT+TGG | 0.529529 | 5.4:-43814873 | MS.gene59707:CDS |
| TACCTTCTCCTTCTAGCATG+TGG | 0.532227 | 5.4:-43816990 | MS.gene59707:CDS |
| TTCATGACTACCATTGAGGC+TGG | 0.539090 | 5.4:+43816848 | None:intergenic |
| ATGAGCCTTGACAATGAAGT+AGG | 0.542080 | 5.4:+43814468 | None:intergenic |
| AGAGTCCTGTGTTTCATGGC+AGG | 0.545935 | 5.4:-43816575 | MS.gene59707:CDS |
| TGGCAGGAGAATTCCCAGTA+AGG | 0.548902 | 5.4:-43816559 | MS.gene59707:intron |
| TCTTGCCTACTTCATTGTCA+AGG | 0.554046 | 5.4:-43814473 | MS.gene59707:CDS |
| ATACAAATAGAAGTTTGACT+TGG | 0.556289 | 5.4:-43814638 | MS.gene59707:CDS |
| CTATGGGAGAAATTCTTCAA+AGG | 0.556837 | 5.4:-43816660 | MS.gene59707:CDS |
| TCCTTTCGATCGAGTTCCGA+AGG | 0.557813 | 5.4:-43816727 | MS.gene59707:CDS |
| ATCCTTCATGACTACCATTG+AGG | 0.559449 | 5.4:+43816844 | None:intergenic |
| ATCTTACAATGGTTCTGAAG+TGG | 0.559601 | 5.4:-43816598 | MS.gene59707:CDS |
| TGTGCCTTTAGCTCCTCTAT+GGG | 0.561241 | 5.4:-43816676 | MS.gene59707:CDS |
| TGGAATCAAATACTATTGGT+TGG | 0.565853 | 5.4:+43816868 | None:intergenic |
| CTACGATCAAACTCAGACAA+TGG | 0.571848 | 5.4:-43814821 | MS.gene59707:CDS |
| ATAAATTCACTAACCTTACT+GGG | 0.572297 | 5.4:+43816546 | None:intergenic |
| CTTCATTGTCAAGGCTCATG+AGG | 0.577302 | 5.4:-43814464 | MS.gene59707:CDS |
| CATAGAGGAGCTAAAGGCAC+AGG | 0.582656 | 5.4:+43816678 | None:intergenic |
| CTGGTCTCACATATTTAACT+GGG | 0.587265 | 5.4:+43814589 | None:intergenic |
| AAATCATGTACAACTTGAGA+TGG | 0.588695 | 5.4:+43816804 | None:intergenic |
| ATTCTCCTGCCATGAAACAC+AGG | 0.591758 | 5.4:+43816570 | None:intergenic |
| ACCTTCGGAACTCGATCGAA+AGG | 0.595763 | 5.4:+43816726 | None:intergenic |
| ACTGTTGAGAAGTTGAAGAG+TGG | 0.604831 | 5.4:+43814939 | None:intergenic |
| CAAGTTCAGTTGGACGCGGA+CGG | 0.618278 | 5.4:-43814863 | MS.gene59707:CDS |
| CTAGAAGGAGAAGGTAAGTG+AGG | 0.623171 | 5.4:+43816997 | None:intergenic |
| ATCAGACCGAACATATTACC+CGG | 0.623786 | 5.4:-43814745 | MS.gene59707:CDS |
| TTTCGATCGAGTTCCGAAGG+TGG | 0.623922 | 5.4:-43816724 | MS.gene59707:CDS |
| CACTCGAATCCATCTTACAA+TGG | 0.632327 | 5.4:-43816609 | MS.gene59707:CDS |
| CAGGCAAGTTCAGTTGGACG+CGG | 0.637111 | 5.4:-43814867 | MS.gene59707:CDS |
| TGGGTTGACTGGTCAAAGGG+TGG | 0.638199 | 5.4:-43814618 | MS.gene59707:CDS |
| CATTGTCTGAGTTTGATCGT+AGG | 0.644597 | 5.4:+43814822 | None:intergenic |
| TACCACATGCTAGAAGGAGA+AGG | 0.656558 | 5.4:+43816988 | None:intergenic |
| ATAATGCAGAAAGTAGAATG+GGG | 0.668247 | 5.4:-43815059 | MS.gene59707:intron |
| AATGGAGAAAAGGGTCTCAG+TGG | 0.678248 | 5.4:-43814803 | MS.gene59707:CDS |
| AGTTAAATATGTGAGACCAG+AGG | 0.732458 | 5.4:-43814586 | MS.gene59707:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAATTGAAAGAATAA+AGG | - | chr5.4:43815836-43815855 | MS.gene59707:intron | 10.0% |
| !!! | TTTTTTTTTTTATCTTGATA+TGG | - | chr5.4:43815003-43815022 | MS.gene59707:CDS | 10.0% |
| !! | AACACTAAAATTTCATTAAA+AGG | + | chr5.4:43816125-43816144 | None:intergenic | 15.0% |
| !! | ATTGTAAAAAATTTGATCTT+AGG | + | chr5.4:43815116-43815135 | None:intergenic | 15.0% |
| !! | TTATAAATGAAAATTGTCAT+TGG | - | chr5.4:43815031-43815050 | MS.gene59707:CDS | 15.0% |
| !!! | AGATATAAAAAACTTTTTTG+AGG | - | chr5.4:43815514-43815533 | MS.gene59707:intron | 15.0% |
| !!! | ATATAAAAAACTTTTTTGAG+GGG | - | chr5.4:43815516-43815535 | MS.gene59707:intron | 15.0% |
| !!! | GATATAAAAAACTTTTTTGA+GGG | - | chr5.4:43815515-43815534 | MS.gene59707:intron | 15.0% |
| !!! | GTTTCAAATCTTTAATTTTT+AGG | - | chr5.4:43816362-43816381 | MS.gene59707:intron | 15.0% |
| !!! | GTTTTTTATATCTTTTCTTT+TGG | + | chr5.4:43815507-43815526 | None:intergenic | 15.0% |
| !!! | TTTAATTTTTTTACACATTG+TGG | + | chr5.4:43816193-43816212 | None:intergenic | 15.0% |
| !! | AAAAAATATTGAATGTAACC+AGG | - | chr5.4:43815359-43815378 | MS.gene59707:intron | 20.0% |
| !! | AAATTGAATTAAGAGGAAAA+TGG | - | chr5.4:43815275-43815294 | MS.gene59707:intron | 20.0% |
| !! | AAGTATACAATAAACCATAA+AGG | + | chr5.4:43816342-43816361 | None:intergenic | 20.0% |
| !! | AATTGAATTAAGAGGAAAAT+GGG | - | chr5.4:43815276-43815295 | MS.gene59707:intron | 20.0% |
| !! | ACTAAAATTTCATTAAAAGG+TGG | + | chr5.4:43816122-43816141 | None:intergenic | 20.0% |
| !! | ATCAAAGAACAAATAAAGTA+AGG | - | chr5.4:43815085-43815104 | MS.gene59707:intron | 20.0% |
| !! | GAGAAAATTAATTTCCTTTA+TGG | - | chr5.4:43816325-43816344 | MS.gene59707:intron | 20.0% |
| !! | TCAAAGAACAAATAAAGTAA+GGG | - | chr5.4:43815086-43815105 | MS.gene59707:intron | 20.0% |
| !!! | AAACCATGTATAAATCTTTT+AGG | + | chr5.4:43815886-43815905 | None:intergenic | 20.0% |
| !!! | ATGGATAATATTTTCATTGA+AGG | - | chr5.4:43815174-43815193 | MS.gene59707:intron | 20.0% |
| !!! | TATTGTTTGATTTGAAAACA+TGG | + | chr5.4:43815146-43815165 | None:intergenic | 20.0% |
| ! | AAAGGATATTCATCTATCTT+AGG | + | chr5.4:43814773-43814792 | None:intergenic | 25.0% |
| ! | AAATTTCATTAAAAGGTGGT+AGG | + | chr5.4:43816118-43816137 | None:intergenic | 25.0% |
| ! | AACCAAACATGTAAGTATAA+TGG | - | chr5.4:43816980-43816999 | MS.gene59707:CDS | 25.0% |
| ! | AACTTAATGCTAACAAAAGT+TGG | + | chr5.4:43816845-43816864 | None:intergenic | 25.0% |
| ! | AATAAATTCACTAACCTTAC+TGG | + | chr5.4:43814972-43814991 | None:intergenic | 25.0% |
| ! | ATAAATTCACTAACCTTACT+GGG | + | chr5.4:43814971-43814990 | None:intergenic | 25.0% |
| ! | ATACAAATAGAAGTTTGACT+TGG | - | chr5.4:43816876-43816895 | MS.gene59707:CDS | 25.0% |
| ! | ATAGATTATAGTCTTCAACT+AGG | - | chr5.4:43815953-43815972 | MS.gene59707:intron | 25.0% |
| ! | ATATAATGCAGAAAGTAGAA+TGG | - | chr5.4:43816453-43816472 | MS.gene59707:intron | 25.0% |
| ! | ATTGAATTAAGAGGAAAATG+GGG | - | chr5.4:43815277-43815296 | MS.gene59707:intron | 25.0% |
| ! | ATTGGAAGCTTAATTCAAAA+TGG | + | chr5.4:43816240-43816259 | None:intergenic | 25.0% |
| ! | CCTAAGTAAATTGAATTAAG+AGG | - | chr5.4:43815268-43815287 | MS.gene59707:intron | 25.0% |
| ! | CCTCTTAATTCAATTTACTT+AGG | + | chr5.4:43815271-43815290 | None:intergenic | 25.0% |
| ! | TATAATGCAGAAAGTAGAAT+GGG | - | chr5.4:43816454-43816473 | MS.gene59707:intron | 25.0% |
| ! | TCAAATCAAACAATACTATG+TGG | - | chr5.4:43815151-43815170 | MS.gene59707:intron | 25.0% |
| ! | TTCCATTATACTTACATGTT+TGG | + | chr5.4:43816985-43817004 | None:intergenic | 25.0% |
| !! | ATTTTCTCATGATCACTAAT+TGG | + | chr5.4:43816313-43816332 | None:intergenic | 25.0% |
| !! | CTTTTGTTAGCATTAAGTTT+TGG | - | chr5.4:43816846-43816865 | MS.gene59707:CDS | 25.0% |
| !! | GTTTTCAGAAAATATTGCAA+TGG | - | chr5.4:43816791-43816810 | MS.gene59707:CDS | 25.0% |
| !! | TACAAATAGAAGTTTGACTT+GGG | - | chr5.4:43816877-43816896 | MS.gene59707:CDS | 25.0% |
| !! | TTAATACTGTGCCTTAATTT+TGG | + | chr5.4:43815992-43816011 | None:intergenic | 25.0% |
| !! | TTATATCTTTTCTTTTGGCA+AGG | + | chr5.4:43815502-43815521 | None:intergenic | 25.0% |
| !! | TTTTCTCATGATCACTAATT+GGG | + | chr5.4:43816312-43816331 | None:intergenic | 25.0% |
| !!! | ATGAAATTTTAGTGTTGTGT+AGG | - | chr5.4:43816129-43816148 | MS.gene59707:intron | 25.0% |
| !!! | ATGTTTGTTATTTGTTTGCT+AGG | - | chr5.4:43817014-43817033 | MS.gene59707:CDS | 25.0% |
| !!! | TACATTTTGAAACAAACTGA+TGG | + | chr5.4:43816415-43816434 | None:intergenic | 25.0% |
| !!! | TGAAATTTTAGTGTTGTGTA+GGG | - | chr5.4:43816130-43816149 | MS.gene59707:intron | 25.0% |
| !!! | TGCTAATAGTATTTTGACTA+TGG | + | chr5.4:43815771-43815790 | None:intergenic | 25.0% |
| !!! | TTGCAATATTTTCTGAAAAC+CGG | + | chr5.4:43816791-43816810 | None:intergenic | 25.0% |
| AAAAATTCACAAGTAACCTC+TGG | + | chr5.4:43816947-43816966 | None:intergenic | 30.0% | |
| AAATCATGTACAACTTGAGA+TGG | + | chr5.4:43814713-43814732 | None:intergenic | 30.0% | |
| AACACTTTCAATATGAAGTG+TGG | - | chr5.4:43815397-43815416 | MS.gene59707:intron | 30.0% | |
| ACACTTTCAATATGAAGTGT+GGG | - | chr5.4:43815398-43815417 | MS.gene59707:intron | 30.0% | |
| ACTCTTTAGACTCTACATAT+TGG | + | chr5.4:43816161-43816180 | None:intergenic | 30.0% | |
| ATAATGCAGAAAGTAGAATG+GGG | - | chr5.4:43816455-43816474 | MS.gene59707:intron | 30.0% | |
| ATCAAACAATACTATGTGGA+TGG | - | chr5.4:43815155-43815174 | MS.gene59707:intron | 30.0% | |
| ATTATAGTCTTCAACTAGGT+AGG | - | chr5.4:43815957-43815976 | MS.gene59707:intron | 30.0% | |
| GTGCCTAAAAGATTTATACA+TGG | - | chr5.4:43815880-43815899 | MS.gene59707:intron | 30.0% | |
| GTTGAAGACTATAATCTATG+AGG | + | chr5.4:43815952-43815971 | None:intergenic | 30.0% | |
| TATGGGAGAAATTCTTCAAA+GGG | - | chr5.4:43814855-43814874 | MS.gene59707:CDS | 30.0% | |
| TCTGCATTATATCAGATGAA+GGG | + | chr5.4:43816445-43816464 | None:intergenic | 30.0% | |
| TGAGTGATGAAGAATTGTTA+TGG | - | chr5.4:43814732-43814751 | MS.gene59707:CDS | 30.0% | |
| TGGAATCAAATACTATTGGT+TGG | + | chr5.4:43814649-43814668 | None:intergenic | 30.0% | |
| TGTCTGTATATAGCATTTCA+TGG | - | chr5.4:43815680-43815699 | MS.gene59707:intron | 30.0% | |
| TTCTGCATTATATCAGATGA+AGG | + | chr5.4:43816446-43816465 | None:intergenic | 30.0% | |
| ! | AAATTCTTCAAAGGGCATAA+AGG | - | chr5.4:43814863-43814882 | MS.gene59707:CDS | 30.0% |
| ! | AATTCTTCAAAGGGCATAAA+GGG | - | chr5.4:43814864-43814883 | MS.gene59707:CDS | 30.0% |
| ! | AGAGGTTACTTGTGAATTTT+TGG | - | chr5.4:43816946-43816965 | MS.gene59707:CDS | 30.0% |
| !! | GTGAATTTTTGGAGAATTTG+AGG | - | chr5.4:43816957-43816976 | MS.gene59707:CDS | 30.0% |
| !! | TGCAATATTTTCTGAAAACC+GGG | + | chr5.4:43816790-43816809 | None:intergenic | 30.0% |
| !!! | GTATTTTGACTATGGAATAC+TGG | + | chr5.4:43815763-43815782 | None:intergenic | 30.0% |
| AAACTCAGACAATGGAGAAA+AGG | - | chr5.4:43816701-43816720 | MS.gene59707:CDS | 35.0% | |
| AAAGGTGGTAGGAATTTAGA+TGG | + | chr5.4:43816107-43816126 | None:intergenic | 35.0% | |
| AACTATCCTCTTCCATACTA+CGG | + | chr5.4:43815626-43815645 | None:intergenic | 35.0% | |
| AACTCAGACAATGGAGAAAA+GGG | - | chr5.4:43816702-43816721 | MS.gene59707:CDS | 35.0% | |
| AACTGAGAATAGATAGCTGT+TGG | - | chr5.4:43816010-43816029 | MS.gene59707:intron | 35.0% | |
| AATTAAATGAAGCAGAGCAG+AGG | - | chr5.4:43815302-43815321 | MS.gene59707:intron | 35.0% | |
| ACTTCAGAACCATTGTAAGA+TGG | + | chr5.4:43814917-43814936 | None:intergenic | 35.0% | |
| AGGCTGGAATCAAATACTAT+TGG | + | chr5.4:43814653-43814672 | None:intergenic | 35.0% | |
| AGTTAAATATGTGAGACCAG+AGG | - | chr5.4:43816928-43816947 | MS.gene59707:CDS | 35.0% | |
| ATAATCTATGAGGTGGCAAA+TGG | + | chr5.4:43815942-43815961 | None:intergenic | 35.0% | |
| ATAGATAGCTGTTGGAAGTT+TGG | - | chr5.4:43816018-43816037 | MS.gene59707:intron | 35.0% | |
| ATTAAATGAAGCAGAGCAGA+GGG | - | chr5.4:43815303-43815322 | MS.gene59707:intron | 35.0% | |
| CTATGGGAGAAATTCTTCAA+AGG | - | chr5.4:43814854-43814873 | MS.gene59707:CDS | 35.0% | |
| CTGATATGAGAACAAATCGT+TGG | + | chr5.4:43816544-43816563 | None:intergenic | 35.0% | |
| CTGGTCTCACATATTTAACT+GGG | + | chr5.4:43816928-43816947 | None:intergenic | 35.0% | |
| GAAGACTATAATCTATGAGG+TGG | + | chr5.4:43815949-43815968 | None:intergenic | 35.0% | |
| GGCAAGGATTAAAAAAACCT+TGG | + | chr5.4:43815486-43815505 | None:intergenic | 35.0% | |
| TAAGGTAGTTATGGTCTCAA+TGG | + | chr5.4:43815455-43815474 | None:intergenic | 35.0% | |
| TCTGGTCTCACATATTTAAC+TGG | + | chr5.4:43816929-43816948 | None:intergenic | 35.0% | |
| TGAAAACCGGGTAATATGTT+CGG | + | chr5.4:43816778-43816797 | None:intergenic | 35.0% | |
| TGGCAAATGGCAATTTATCT+GGG | + | chr5.4:43815929-43815948 | None:intergenic | 35.0% | |
| TTGAAGAATTTCTCCCATAG+AGG | + | chr5.4:43814854-43814873 | None:intergenic | 35.0% | |
| ! | AATACTATTGGTTGGCGTAA+CGG | + | chr5.4:43814641-43814660 | None:intergenic | 35.0% |
| ! | ACTAACATGTGTCCTCTTTT+TGG | + | chr5.4:43815711-43815730 | None:intergenic | 35.0% |
| !! | AATTTTAGTGTTGTGTAGGG+AGG | - | chr5.4:43816133-43816152 | MS.gene59707:intron | 35.0% |
| !! | ATCTTACAATGGTTCTGAAG+TGG | - | chr5.4:43814916-43814935 | MS.gene59707:CDS | 35.0% |
| !! | ATTTTAGTGTTGTGTAGGGA+GGG | - | chr5.4:43816134-43816153 | MS.gene59707:intron | 35.0% |
| !! | GTGACATGTACGTTTTAAGT+TGG | - | chr5.4:43815422-43815441 | MS.gene59707:intron | 35.0% |
| !!! | AAAACTTTTTTGAGGGGAAG+AGG | - | chr5.4:43815522-43815541 | MS.gene59707:intron | 35.0% |
| AAAACCTTGGCACTCAGTTA+AGG | + | chr5.4:43815473-43815492 | None:intergenic | 40.0% | |
| AAGAACAAAAACGCCACCTT+CGG | + | chr5.4:43814806-43814825 | None:intergenic | 40.0% | |
| ACTGTTGAGAAGTTGAAGAG+TGG | + | chr5.4:43816578-43816597 | None:intergenic | 40.0% | |
| AGACCAGAGATAGAAAATGC+AGG | - | chr5.4:43816265-43816284 | MS.gene59707:intron | 40.0% | |
| ATCAGACCGAACATATTACC+CGG | - | chr5.4:43816769-43816788 | MS.gene59707:CDS | 40.0% | |
| ATCCTTCATGACTACCATTG+AGG | + | chr5.4:43814673-43814692 | None:intergenic | 40.0% | |
| ATGAGCCTTGACAATGAAGT+AGG | + | chr5.4:43817049-43817068 | None:intergenic | 40.0% | |
| CACTCGAATCCATCTTACAA+TGG | - | chr5.4:43814905-43814924 | MS.gene59707:CDS | 40.0% | |
| CATTGTCTGAGTTTGATCGT+AGG | + | chr5.4:43816695-43816714 | None:intergenic | 40.0% | |
| CTACGATCAAACTCAGACAA+TGG | - | chr5.4:43816693-43816712 | MS.gene59707:CDS | 40.0% | |
| CTATCTCTGGTCTGTTTCAT+TGG | + | chr5.4:43816258-43816277 | None:intergenic | 40.0% | |
| CTCAACAAAAAGCTACGTCA+TGG | - | chr5.4:43816616-43816635 | MS.gene59707:CDS | 40.0% | |
| CTCACATATTTAACTGGGTG+TGG | + | chr5.4:43816923-43816942 | None:intergenic | 40.0% | |
| GACCAGAGATAGAAAATGCA+GGG | - | chr5.4:43816266-43816285 | MS.gene59707:intron | 40.0% | |
| GCACTCAGTTAAGGTAGTTA+TGG | + | chr5.4:43815464-43815483 | None:intergenic | 40.0% | |
| GGTCATGAGGACCAAAATTA+AGG | - | chr5.4:43815978-43815997 | MS.gene59707:intron | 40.0% | |
| GTATTTGATTCCAGCCTCAA+TGG | - | chr5.4:43814656-43814675 | MS.gene59707:CDS | 40.0% | |
| GTGGCAAATGGCAATTTATC+TGG | + | chr5.4:43815930-43815949 | None:intergenic | 40.0% | |
| GTTATGGTCTCAATGGATCA+TGG | + | chr5.4:43815448-43815467 | None:intergenic | 40.0% | |
| TCTTGCCTACTTCATTGTCA+AGG | - | chr5.4:43817041-43817060 | MS.gene59707:CDS | 40.0% | |
| TTCATGGTTCCTCCAAAAAG+AGG | - | chr5.4:43815696-43815715 | MS.gene59707:intron | 40.0% | |
| ! | AACATGTGTCCTCTTTTTGG+AGG | + | chr5.4:43815708-43815727 | None:intergenic | 40.0% |
| ! | GCGTTTTTGTTCTTGGTTAG+AGG | - | chr5.4:43814812-43814831 | MS.gene59707:CDS | 40.0% |
| ! | TACCCTGCATTTTCTATCTC+TGG | + | chr5.4:43816271-43816290 | None:intergenic | 40.0% |
| AACCAACCATGACCGTAGTA+TGG | - | chr5.4:43815611-43815630 | MS.gene59707:intron | 45.0% | |
| AATGGAGAAAAGGGTCTCAG+TGG | - | chr5.4:43816711-43816730 | MS.gene59707:CDS | 45.0% | |
| ACTACCTTAACTGAGTGCCA+AGG | - | chr5.4:43815466-43815485 | MS.gene59707:intron | 45.0% | |
| AGCCTCAATGGTAGTCATGA+AGG | - | chr5.4:43814668-43814687 | MS.gene59707:CDS | 45.0% | |
| AGGGTCTCAGTGGTTTGAAA+TGG | - | chr5.4:43816721-43816740 | MS.gene59707:CDS | 45.0% | |
| ATACTACGGTCATGGTTGGT+TGG | + | chr5.4:43815612-43815631 | None:intergenic | 45.0% | |
| ATTCTCCTGCCATGAAACAC+AGG | + | chr5.4:43814947-43814966 | None:intergenic | 45.0% | |
| CCACTGAAGTAGCTTACAAC+TGG | - | chr5.4:43815545-43815564 | MS.gene59707:intron | 45.0% | |
| CCAGTTGTAAGCTACTTCAG+TGG | + | chr5.4:43815548-43815567 | None:intergenic | 45.0% | |
| CTAGAAGGAGAAGGTAAGTG+AGG | + | chr5.4:43814520-43814539 | None:intergenic | 45.0% | |
| CTAGCATGTGGTATCACACT+TGG | - | chr5.4:43814536-43814555 | MS.gene59707:CDS | 45.0% | |
| CTTCAACTAGGTAGGTCATG+AGG | - | chr5.4:43815965-43815984 | MS.gene59707:intron | 45.0% | |
| CTTCATTGTCAAGGCTCATG+AGG | - | chr5.4:43817050-43817069 | MS.gene59707:CDS | 45.0% | |
| GTAACCAGGTGAGTTAGTAC+TGG | - | chr5.4:43815373-43815392 | MS.gene59707:intron | 45.0% | |
| GTGTGATACCACATGCTAGA+AGG | + | chr5.4:43814535-43814554 | None:intergenic | 45.0% | |
| GTTTCCAGTACTAACTCACC+TGG | + | chr5.4:43815380-43815399 | None:intergenic | 45.0% | |
| TACCACATGCTAGAAGGAGA+AGG | + | chr5.4:43814529-43814548 | None:intergenic | 45.0% | |
| TACCTTCTCCTTCTAGCATG+TGG | - | chr5.4:43814524-43814543 | MS.gene59707:CDS | 45.0% | |
| TTCATGACTACCATTGAGGC+TGG | + | chr5.4:43814669-43814688 | None:intergenic | 45.0% | |
| TTCCATACTACGGTCATGGT+TGG | + | chr5.4:43815616-43815635 | None:intergenic | 45.0% | |
| TTCTCCCATAGAGGAGCTAA+AGG | + | chr5.4:43814845-43814864 | None:intergenic | 45.0% | |
| ! | GAAGGTGGCGTTTTTGTTCT+TGG | - | chr5.4:43814805-43814824 | MS.gene59707:CDS | 45.0% |
| ! | TACTACGGTCATGGTTGGTT+GGG | + | chr5.4:43815611-43815630 | None:intergenic | 45.0% |
| ! | TGTGCCTTTAGCTCCTCTAT+GGG | - | chr5.4:43814838-43814857 | MS.gene59707:CDS | 45.0% |
| !! | ACTTGGGTTGACTGGTCAAA+GGG | - | chr5.4:43816893-43816912 | MS.gene59707:CDS | 45.0% |
| !! | GAAGTTTGACTTGGGTTGAC+TGG | - | chr5.4:43816885-43816904 | MS.gene59707:CDS | 45.0% |
| !!! | CAATATTTTTTAATTATTAT+AGG | + | chr5.4:43815350-43815369 | None:intergenic | 5.0% |
| ACCTTCGGAACTCGATCGAA+AGG | + | chr5.4:43814791-43814810 | None:intergenic | 50.0% | |
| AGAGTCCTGTGTTTCATGGC+AGG | - | chr5.4:43814939-43814958 | MS.gene59707:CDS | 50.0% | |
| CCATGACCGTAGTATGGAAG+AGG | - | chr5.4:43815617-43815636 | MS.gene59707:intron | 50.0% | |
| CCTCTTCCATACTACGGTCA+TGG | + | chr5.4:43815620-43815639 | None:intergenic | 50.0% | |
| GTGGAGAGTCCTGTGTTTCA+TGG | - | chr5.4:43814935-43814954 | MS.gene59707:CDS | 50.0% | |
| TACGACCAGGCAAGTTCAGT+TGG | - | chr5.4:43816641-43816660 | MS.gene59707:CDS | 50.0% | |
| TCCTTTCGATCGAGTTCCGA+AGG | - | chr5.4:43814787-43814806 | MS.gene59707:CDS | 50.0% | |
| TGGCAGGAGAATTCCCAGTA+AGG | - | chr5.4:43814955-43814974 | MS.gene59707:CDS | 50.0% | |
| TTTCGATCGAGTTCCGAAGG+TGG | - | chr5.4:43814790-43814809 | MS.gene59707:CDS | 50.0% | |
| ! | CATAGAGGAGCTAAAGGCAC+AGG | + | chr5.4:43814839-43814858 | None:intergenic | 50.0% |
| ! | CTGTGCCTTTAGCTCCTCTA+TGG | - | chr5.4:43814837-43814856 | MS.gene59707:CDS | 50.0% |
| ! | GCTCATGAGGTTTGCTCCAA+AGG | - | chr5.4:43817063-43817082 | MS.gene59707:CDS | 50.0% |
| !! | GACTTGGGTTGACTGGTCAA+AGG | - | chr5.4:43816892-43816911 | MS.gene59707:CDS | 50.0% |
| CAAGTTCAGTTGGACGCGGA+CGG | - | chr5.4:43816651-43816670 | MS.gene59707:CDS | 55.0% | |
| CAGGCAAGTTCAGTTGGACG+CGG | - | chr5.4:43816647-43816666 | MS.gene59707:CDS | 55.0% | |
| CTACGTCATGGCTTACGACC+AGG | - | chr5.4:43816628-43816647 | MS.gene59707:CDS | 55.0% | |
| ! | TACGGTCATGGTTGGTTGGG+TGG | + | chr5.4:43815608-43815627 | None:intergenic | 55.0% |
| ! | TGGGTTGACTGGTCAAAGGG+TGG | - | chr5.4:43816896-43816915 | MS.gene59707:CDS | 55.0% |
| CGCGTCCAACTGAACTTGCC+TGG | + | chr5.4:43816649-43816668 | None:intergenic | 60.0% | |
| GTTTGCAAGCAGGCGACGCT+CGG | + | chr5.4:43816501-43816520 | None:intergenic | 60.0% | |
| ! | CGAGAAGCGCGTTTGCAAGC+AGG | + | chr5.4:43816511-43816530 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 43814437 | 43817099 | 43814437 | ID=MS.gene59707 |
| chr5.4 | mRNA | 43814437 | 43817099 | 43814437 | ID=MS.gene59707.t1;Parent=MS.gene59707 |
| chr5.4 | exon | 43816560 | 43817099 | 43816560 | ID=MS.gene59707.t1.exon1;Parent=MS.gene59707.t1 |
| chr5.4 | CDS | 43816560 | 43817099 | 43816560 | ID=cds.MS.gene59707.t1;Parent=MS.gene59707.t1 |
| chr5.4 | exon | 43814437 | 43815072 | 43814437 | ID=MS.gene59707.t1.exon2;Parent=MS.gene59707.t1 |
| chr5.4 | CDS | 43814437 | 43815072 | 43814437 | ID=cds.MS.gene59707.t1;Parent=MS.gene59707.t1 |
| Gene Sequence |
| Protein sequence |
