AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60298


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60298.t1 MTR_1g012760 92.832 279 18 1 1 279 1 277 0.0 538
MS.gene60298.t1 MTR_1g012760 89.455 275 27 1 5 279 16 288 0.0 508
MS.gene60298.t1 MTR_2g090505 39.773 176 100 2 35 204 83 258 6.93e-38 136
MS.gene60298.t1 MTR_1g099140 44.242 165 86 2 40 198 88 252 1.81e-36 136
MS.gene60298.t1 MTR_6g029530 41.243 177 94 3 30 196 493 669 2.80e-34 131
MS.gene60298.t1 MTR_3g116710 40.678 177 96 4 26 194 67 242 1.11e-33 123
MS.gene60298.t1 MTR_3g077875 35.795 176 106 3 35 204 78 252 4.15e-33 122
MS.gene60298.t1 MTR_3g015530 39.490 157 91 2 32 184 46 202 5.35e-33 121
MS.gene60298.t1 MTR_3g034840 39.490 157 88 3 24 174 57 212 5.78e-31 115
MS.gene60298.t1 MTR_0599s0020 39.490 157 88 3 24 174 57 212 5.78e-31 115
MS.gene60298.t1 MTR_3g072200 39.735 151 87 2 49 195 59 209 3.12e-30 119
MS.gene60298.t1 MTR_6g464570 37.931 145 83 3 29 166 8 152 3.72e-28 106
MS.gene60298.t1 MTR_5g046145 43.165 139 70 2 40 175 124 256 5.40e-28 110
MS.gene60298.t1 MTR_4g119600 38.636 176 93 4 35 201 60 229 2.05e-27 108
MS.gene60298.t1 MTR_5g006100 36.585 164 97 3 47 204 66 228 1.53e-26 108
MS.gene60298.t1 MTR_6g075990 37.356 174 94 4 35 199 78 245 2.78e-26 103
MS.gene60298.t1 MTR_0528s0010 42.105 114 66 0 91 204 6 119 6.26e-26 100
MS.gene60298.t1 MTR_5g046160 38.509 161 75 5 50 204 55 197 4.59e-25 100
MS.gene60298.t1 MTR_5g032220 34.682 173 97 2 35 204 71 230 6.81e-25 103
MS.gene60298.t1 MTR_3g087440 38.028 142 81 3 41 176 84 224 3.79e-24 97.8
MS.gene60298.t1 MTR_5g031650 39.333 150 76 4 35 175 82 225 6.82e-24 97.1
MS.gene60298.t1 MTR_4g120790 32.571 175 89 2 31 204 60 206 7.11e-24 97.1
MS.gene60298.t1 MTR_2g026585 30.178 169 90 2 32 199 60 201 1.04e-21 94.0
MS.gene60298.t1 MTR_1g081740 31.646 158 80 2 32 188 59 189 3.25e-21 89.0
MS.gene60298.t1 MTR_2g461140 33.962 159 72 3 45 197 51 182 4.55e-21 88.2
MS.gene60298.t1 MTR_2g023130 34.132 167 67 3 41 204 30 156 6.53e-21 89.0
MS.gene60298.t1 MTR_4g057300 38.281 128 75 2 81 204 2 129 1.24e-19 87.4
MS.gene60298.t1 MTR_3g030230 41.346 104 57 2 77 176 68 171 1.97e-19 83.6
MS.gene60298.t1 MTR_2g067930 35.294 153 89 3 57 199 44 196 3.60e-19 83.6
MS.gene60298.t1 MTR_8g107490 33.333 177 107 5 9 175 7 182 5.23e-19 85.1
MS.gene60298.t1 MTR_1g058140 37.615 109 67 1 92 199 89 197 9.80e-19 83.2
MS.gene60298.t1 MTR_3g067290 35.252 139 85 3 56 190 83 220 1.38e-18 82.4
MS.gene60298.t1 MTR_4g057975 32.099 162 98 5 21 176 43 198 1.95e-18 81.6
MS.gene60298.t1 MTR_7g065910 35.385 130 69 3 81 204 34 154 2.80e-18 84.0
MS.gene60298.t1 MTR_8g445570 35.849 106 66 2 100 204 6 110 5.04e-18 78.2
MS.gene60298.t1 MTR_0156s0040 38.462 130 74 2 81 204 2 131 5.47e-18 80.1
MS.gene60298.t1 MTR_7g050385 36.134 119 72 2 32 146 111 229 8.20e-18 80.9
MS.gene60298.t1 MTR_3g462670 32.237 152 98 3 57 204 38 188 1.05e-17 80.1
MS.gene60298.t1 MTR_5g079560 31.169 154 95 5 35 178 74 226 2.40e-17 79.7
MS.gene60298.t1 MTR_4g100470 38.835 103 63 0 102 204 71 173 3.77e-17 78.2
MS.gene60298.t1 MTR_1g098990 32.941 170 84 3 35 203 60 200 4.05e-17 79.7
MS.gene60298.t1 MTR_7g106560 37.113 97 60 1 109 204 92 188 5.01e-17 77.8
MS.gene60298.t1 MTR_0116s0050 30.899 178 89 4 20 196 27 171 6.75e-17 76.6
MS.gene60298.t1 MTR_8g103800 30.220 182 101 4 21 201 43 199 1.47e-16 78.2
MS.gene60298.t1 MTR_8g009330 35.915 142 71 5 25 157 76 206 2.37e-16 76.6
MS.gene60298.t1 MTR_1g043440 36.170 141 69 4 121 255 176 301 4.41e-16 77.0
MS.gene60298.t1 MTR_5g072970 38.298 94 58 0 111 204 33 126 9.18e-16 75.9
MS.gene60298.t1 MTR_7g034570 38.739 111 62 2 81 190 76 181 5.96e-15 72.0
MS.gene60298.t1 MTR_4g113170 37.079 89 55 1 110 197 74 162 7.20e-15 74.7
MS.gene60298.t1 MTR_5g060540 29.333 150 85 1 35 184 42 170 1.03e-14 73.9
MS.gene60298.t1 MTR_6g089230 34.211 114 56 3 92 204 38 133 1.27e-14 72.0
MS.gene60298.t1 MTR_7g010970 40.217 92 48 3 84 169 5 95 2.99e-14 70.9
MS.gene60298.t1 MTR_5g046245 39.175 97 58 1 109 204 6 102 8.32e-14 69.3
MS.gene60298.t1 MTR_7g024830 40.845 71 42 0 134 204 1 71 9.31e-14 65.5
MS.gene60298.t1 MTR_5g073000 36.000 100 64 0 109 208 109 208 9.50e-14 71.2
MS.gene60298.t1 MTR_7g056020 25.405 185 112 3 25 204 373 536 9.93e-14 71.2
MS.gene60298.t1 MTR_7g064870 38.938 113 61 3 46 152 54 164 2.38e-13 67.4
MS.gene60298.t1 MTR_2g027000 42.466 73 42 0 121 193 101 173 2.87e-13 67.0
MS.gene60298.t1 MTR_5g070810 38.000 100 55 3 60 153 14 112 3.07e-13 65.5
MS.gene60298.t1 MTR_8g020433 31.933 119 80 1 92 209 70 188 4.82e-13 68.9
MS.gene60298.t1 MTR_3g437000 37.500 88 52 1 32 116 38 125 9.49e-13 64.3
MS.gene60298.t1 MTR_6g081290 42.708 96 51 2 81 173 3 97 1.06e-12 63.2
MS.gene60298.t1 MTR_8g016360 31.618 136 85 3 16 146 1 133 1.47e-12 63.9
MS.gene60298.t1 MTR_4g051638 30.579 121 80 2 32 148 120 240 1.61e-12 66.2
MS.gene60298.t1 MTR_8g038805 39.744 78 43 2 83 156 55 132 4.25e-12 62.8
MS.gene60298.t1 MTR_7g050365 35.246 122 53 4 86 204 20 118 7.35e-12 63.5
MS.gene60298.t1 MTR_1g080040 35.789 95 55 2 81 169 1 95 8.62e-12 62.0
MS.gene60298.t1 MTR_1g052890 37.037 81 51 0 121 201 13 93 2.79e-11 63.2
MS.gene60298.t1 MTR_3g467720 33.010 103 56 1 88 190 49 138 5.71e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 57 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACCAACACTTCAGATTT+TGG 0.127175 1.1:-8373884 None:intergenic
GGACATGGCGCCATCGTTTC+TGG 0.166049 1.1:-8374147 None:intergenic
GCCAGAGTTGGAAGCGATTC+AGG 0.243223 1.1:+8373952 MS.gene60298:CDS
CAGAGAAGGAGAAGGAAAAT+TGG 0.276242 1.1:+8374175 MS.gene60298:CDS
CGAGGTGAAGCAGCCAAGTT+AGG 0.314453 1.1:+8373458 MS.gene60298:CDS
TCATTTAAACGGCCTGCAAT+AGG 0.361423 1.1:-8373710 None:intergenic
TTAGAAGAACAGCCTATTGC+AGG 0.373206 1.1:+8373698 MS.gene60298:CDS
TCTGGCAAAATAGATATATC+TGG 0.373242 1.1:-8373935 None:intergenic
TCGATTACGAAATTCTTTAT+CGG 0.375032 1.1:-8373414 None:intergenic
TGAGTGTCCATTCAGATTGC+GGG 0.385405 1.1:+8373601 MS.gene60298:CDS
ATATCTGGTTGATCTTCCTT+TGG 0.393013 1.1:-8373920 None:intergenic
TCATCTCTTCCTCATTTAAA+CGG 0.399399 1.1:-8373721 None:intergenic
TCGACTGGTTCAGCACTGTT+AGG 0.410500 1.1:-8373359 None:intergenic
ACCTGAATCGCTTCCAACTC+TGG 0.412695 1.1:-8373953 None:intergenic
TTTCTCCGTCAACCCTTGTC+AGG 0.435693 1.1:+8371080 MS.gene60298:CDS
AACAATACCAAACCCTAACT+TGG 0.442441 1.1:-8373471 None:intergenic
GAAGCAGCCAAGTTAGGGTT+TGG 0.454402 1.1:+8373464 MS.gene60298:CDS
GGTATGGAGGATCCCTCTGC+TGG 0.464129 1.1:+8373329 MS.gene60298:intron
TCCTTCTCTGCAGGAGGACA+TGG 0.465704 1.1:-8374162 None:intergenic
CTCTTATACTTGAATGCAAA+AGG 0.466270 1.1:+8373525 MS.gene60298:CDS
ATTTCAAAGTCAAATAATAG+AGG 0.466691 1.1:+8373494 MS.gene60298:CDS
GACATGGCGCCATCGTTTCT+GGG 0.467856 1.1:-8374146 None:intergenic
TCCTTCTCCTTCTCTGCAGG+AGG 0.477318 1.1:-8374168 None:intergenic
AGAGAAGGAGAAGGAAAATT+GGG 0.484008 1.1:+8374176 MS.gene60298:CDS
AAATAACCCCGCAATCTGAA+TGG 0.485974 1.1:-8373608 None:intergenic
GAGGTATAACAAGTCTATGA+AGG 0.500697 1.1:+8373859 MS.gene60298:CDS
CACCTCGAACCCACTTCAGC+AGG 0.515291 1.1:-8373442 None:intergenic
AAAACACAATCATGAGATGA+TGG 0.519225 1.1:+8373670 MS.gene60298:CDS
GAGGTGAAGCAGCCAAGTTA+GGG 0.528533 1.1:+8373459 MS.gene60298:CDS
AGATTTATAATGCACGTTCG+AGG 0.531682 1.1:+8373840 MS.gene60298:CDS
TATTGCAGGCCGTTTAAATG+AGG 0.536027 1.1:+8373712 MS.gene60298:CDS
GCCATGTCCTCCTGCAGAGA+AGG 0.538358 1.1:+8374161 MS.gene60298:CDS
ATTTACCTGACAAGGGTTGA+CGG 0.539125 1.1:-8371085 None:intergenic
TAGTGAATATTTACCTGACA+AGG 0.545419 1.1:-8371093 None:intergenic
ATCGAGATGACCTGCTGAAG+TGG 0.550843 1.1:+8373432 MS.gene60298:CDS
ATTACGAAATTCTTTATCGG+TGG 0.564422 1.1:-8373411 None:intergenic
TGGGAAGTTACCGTAGTATG+TGG 0.565876 1.1:+8373647 MS.gene60298:CDS
GACCTGCTGAAGTGGGTTCG+AGG 0.578355 1.1:+8373440 MS.gene60298:CDS
GTGAGTGTCCATTCAGATTG+CGG 0.585943 1.1:+8373600 MS.gene60298:CDS
AAATCAAGAGACTCATCGAC+TGG 0.594128 1.1:-8373374 None:intergenic
AGAAAAGAAGAGCTGACGAT+GGG 0.596743 1.1:+8373804 MS.gene60298:CDS
AAGAAAAGAAGAGCTGACGA+TGG 0.604104 1.1:+8373803 MS.gene60298:CDS
AGGTATAACAAGTCTATGAA+GGG 0.614739 1.1:+8373860 MS.gene60298:CDS
GGTAACTTCCCATACGCCAG+AGG 0.621236 1.1:-8373636 None:intergenic
TGATGATGACGGTGTGCCAA+AGG 0.622138 1.1:+8373904 MS.gene60298:CDS
TGATACCATTTCAGGTATGG+AGG 0.622154 1.1:+8373316 MS.gene60298:intron
TCCTCCTGCAGAGAAGGAGA+AGG 0.625108 1.1:+8374167 MS.gene60298:CDS
TCGAGATGACCTGCTGAAGT+GGG 0.628333 1.1:+8373433 MS.gene60298:CDS
TTAGGCTTCAAACCAGCAGA+GGG 0.633057 1.1:-8373341 None:intergenic
GGGTCCAAAATCTGAAGTGT+TGG 0.635922 1.1:+8373880 MS.gene60298:CDS
ATACTTGAATGCAAAAGGAG+TGG 0.641681 1.1:+8373530 MS.gene60298:CDS
GTAACTTCCCATACGCCAGA+GGG 0.653240 1.1:-8373635 None:intergenic
AATAGCTTTCCCAGAAACGA+TGG 0.655369 1.1:+8374137 MS.gene60298:CDS
AGTGAATATTTACCTGACAA+GGG 0.658458 1.1:-8371092 None:intergenic
GAGTGTCCATTCAGATTGCG+GGG 0.660517 1.1:+8373602 MS.gene60298:CDS
GTTAGGCTTCAAACCAGCAG+AGG 0.669794 1.1:-8373342 None:intergenic
GAAGTGTTGGTTGATGATGA+CGG 0.720616 1.1:+8373893 MS.gene60298:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAGGAAAATTAAAATT+TGG - chr1.1:8372705-8372724 None:intergenic 10.0%
!!! ATTTTATAGAATTTTAAAAC+AGG + chr1.1:8372578-8372597 MS.gene60298:intron 10.0%
!!! TTTTTTTTAATTTTCAGATT+CGG + chr1.1:8374061-8374080 MS.gene60298:intron 10.0%
!! AAATTGAAAAGTAATTACAT+TGG - chr1.1:8371308-8371327 None:intergenic 15.0%
!! AATTGTGCAAATATAATTAA+TGG - chr1.1:8373119-8373138 None:intergenic 15.0%
!!! AAAGTCATAAGAATATTTTT+TGG - chr1.1:8373782-8373801 None:intergenic 15.0%
!!! AAATATAATTAATGGATGAT+AGG - chr1.1:8373111-8373130 None:intergenic 15.0%
!!! AATTTTGAAAATATTTCAAG+AGG + chr1.1:8371362-8371381 MS.gene60298:intron 15.0%
!!! CAATCTTTTCATTTTAAAAA+GGG + chr1.1:8373234-8373253 MS.gene60298:intron 15.0%
!!! GTATTTTTATTCTAAGTATT+TGG + chr1.1:8372414-8372433 MS.gene60298:intron 15.0%
!!! TTATAAGACAATAACATTTT+GGG + chr1.1:8372102-8372121 MS.gene60298:intron 15.0%
!!! TTTATAAGACAATAACATTT+TGG + chr1.1:8372101-8372120 MS.gene60298:intron 15.0%
!!! TTTTTTATTATCAAGTTTGT+AGG + chr1.1:8371895-8371914 MS.gene60298:intron 15.0%
!! AAAAACTTAAATCCCTAAAA+CGG + chr1.1:8371148-8371167 MS.gene60298:intron 20.0%
!! AAAGTTAATTACAAGTCATA+CGG - chr1.1:8372914-8372933 None:intergenic 20.0%
!! ATTAACTTTGTAGTTATAAC+AGG + chr1.1:8372925-8372944 MS.gene60298:intron 20.0%
!! ATTTCAAAGTCAAATAATAG+AGG + chr1.1:8373494-8373513 MS.gene60298:CDS 20.0%
!! TAACATAAACACTCAAAATT+TGG - chr1.1:8372959-8372978 None:intergenic 20.0%
!!! AACACACATTTTGTAAAATA+AGG - chr1.1:8373076-8373095 None:intergenic 20.0%
!!! ACACACATTTTGTAAAATAA+GGG - chr1.1:8373075-8373094 None:intergenic 20.0%
!!! ATTTTCATATATCATGATCT+TGG + chr1.1:8371333-8371352 MS.gene60298:intron 20.0%
!!! CATTTTTACAAATGCAAAAT+GGG + chr1.1:8372511-8372530 MS.gene60298:intron 20.0%
!!! CCAATCTTTTCATTTTAAAA+AGG + chr1.1:8373233-8373252 MS.gene60298:intron 20.0%
!!! CCTTTTTAAAATGAAAAGAT+TGG - chr1.1:8373236-8373255 None:intergenic 20.0%
!!! CTTTGTAATTTTATAAATGC+AGG + chr1.1:8372539-8372558 MS.gene60298:intron 20.0%
!!! GTTTTTATTATCAAGTTTGT+TGG + chr1.1:8371782-8371801 MS.gene60298:intron 20.0%
!!! TATTTTTACTGTTTCATCAT+CGG + chr1.1:8372483-8372502 MS.gene60298:intron 20.0%
!!! TCATAAGAATATTTTTTGGA+CGG - chr1.1:8373778-8373797 None:intergenic 20.0%
!!! TCATTTTTACAAATGCAAAA+TGG + chr1.1:8372510-8372529 MS.gene60298:intron 20.0%
!!! TCTGGTAAATTATTTAGTTT+TGG + chr1.1:8372158-8372177 MS.gene60298:intron 20.0%
!!! TTTAGTGAATTTTCTCAATT+GGG + chr1.1:8372754-8372773 MS.gene60298:intron 20.0%
!!! TTTTCTAGATCTAAATGTTA+GGG + chr1.1:8371251-8371270 MS.gene60298:intron 20.0%
!!! TTTTTCTAGATCTAAATGTT+AGG + chr1.1:8371250-8371269 MS.gene60298:intron 20.0%
! AAATCTTAACACCAAATTTG+CGG - chr1.1:8371606-8371625 None:intergenic 25.0%
! AACAAACAAGGTGTAAATTT+AGG - chr1.1:8371184-8371203 None:intergenic 25.0%
! AATTAAACCCAAAAACACAT+TGG + chr1.1:8372008-8372027 MS.gene60298:intron 25.0%
! ATCATGTTCATGAGAAAAAT+AGG - chr1.1:8373300-8373319 None:intergenic 25.0%
! ATTCAATAGTAATTCTGTTC+TGG + chr1.1:8373979-8373998 MS.gene60298:intron 25.0%
! CTTGAAACAAATCAACAAAT+TGG + chr1.1:8372250-8372269 MS.gene60298:intron 25.0%
! TAAAAATACAGTGTTCAATG+TGG - chr1.1:8372403-8372422 None:intergenic 25.0%
! TATGATCCTTGTGTTATATT+TGG + chr1.1:8372041-8372060 MS.gene60298:intron 25.0%
! TCAAGTATGTAAATTGATGT+TGG + chr1.1:8372845-8372864 MS.gene60298:intron 25.0%
! TCGATTACGAAATTCTTTAT+CGG - chr1.1:8373417-8373436 None:intergenic 25.0%
!! AAAACTCAAGGGTAAAATTT+TGG + chr1.1:8371634-8371653 MS.gene60298:intron 25.0%
!! AAACTCAAGGGTAAAATTTT+GGG + chr1.1:8371635-8371654 MS.gene60298:intron 25.0%
!! ACTATGCATTTTTATAAGTG+TGG + chr1.1:8372444-8372463 MS.gene60298:intron 25.0%
!! AGAATTTGTTTCATCTAGAA+GGG - chr1.1:8374026-8374045 None:intergenic 25.0%
!! GTTTAGTGAATTTTCTCAAT+TGG + chr1.1:8372753-8372772 MS.gene60298:intron 25.0%
!!! ATTTTTTGAATCTTGTGTCT+TGG - chr1.1:8373580-8373599 None:intergenic 25.0%
!!! GTTTTGTTTTTACGTATTAC+TGG + chr1.1:8373195-8373214 MS.gene60298:intron 25.0%
!!! TTGTTTTATTTCCGCAAATT+TGG + chr1.1:8371592-8371611 MS.gene60298:intron 25.0%
AAAACACAATCATGAGATGA+TGG + chr1.1:8373670-8373689 MS.gene60298:CDS 30.0%
ACGCAAAAGAAACAATTAGA+AGG - chr1.1:8373177-8373196 None:intergenic 30.0%
AGGTATAACAAGTCTATGAA+GGG + chr1.1:8373860-8373879 MS.gene60298:CDS 30.0%
AGTGAATATTTACCTGACAA+GGG - chr1.1:8371095-8371114 None:intergenic 30.0%
ATACGTAACTTCTTTCAGTA+TGG + chr1.1:8372797-8372816 MS.gene60298:intron 30.0%
ATTACGAAATTCTTTATCGG+TGG - chr1.1:8373414-8373433 None:intergenic 30.0%
ATTGAATGTAATTGTCGTTG+TGG + chr1.1:8371466-8371485 MS.gene60298:intron 30.0%
ATTTGCAATTGCAAAACTCA+AGG + chr1.1:8371622-8371641 MS.gene60298:intron 30.0%
CAAGGAAATTAAGAATGTTC+TGG + chr1.1:8372140-8372159 MS.gene60298:intron 30.0%
CAAGTTTGTAGGATGAATAT+TGG + chr1.1:8371906-8371925 MS.gene60298:intron 30.0%
CTCTTATACTTGAATGCAAA+AGG + chr1.1:8373525-8373544 MS.gene60298:CDS 30.0%
GATGAATATTGACAGAATGT+AGG + chr1.1:8371804-8371823 MS.gene60298:intron 30.0%
GTACAACCAAATATAACACA+AGG - chr1.1:8372050-8372069 None:intergenic 30.0%
TAAATGAGAGTTGAAGATGA+CGG - chr1.1:8373034-8373053 None:intergenic 30.0%
TAGTGAATATTTACCTGACA+AGG - chr1.1:8371096-8371115 None:intergenic 30.0%
TAGTGACAAAATAGCACTAT+CGG - chr1.1:8372619-8372638 None:intergenic 30.0%
TCAAATATCACCAGTAACTT+TGG + chr1.1:8372375-8372394 MS.gene60298:intron 30.0%
TCATCTCTTCCTCATTTAAA+CGG - chr1.1:8373724-8373743 None:intergenic 30.0%
TCTGGCAAAATAGATATATC+TGG - chr1.1:8373938-8373957 None:intergenic 30.0%
TTTGCAATTGCAAAACTCAA+GGG + chr1.1:8371623-8371642 MS.gene60298:intron 30.0%
! AAAAAACCTTACCTTTTGCT+AGG - chr1.1:8371703-8371722 None:intergenic 30.0%
! AAAAACCTTACCTTTTGCTA+GGG - chr1.1:8371702-8371721 None:intergenic 30.0%
! ATTCTGAACCAATGTGTTTT+TGG - chr1.1:8372019-8372038 None:intergenic 30.0%
! ATTGTGTTTTCCACATACTA+CGG - chr1.1:8373660-8373679 None:intergenic 30.0%
! GAGAATTTGTTTCATCTAGA+AGG - chr1.1:8374027-8374046 None:intergenic 30.0%
! TATATCTATTTTGCCAGAGT+TGG + chr1.1:8373940-8373959 MS.gene60298:CDS 30.0%
! TTCTGAACCAATGTGTTTTT+GGG - chr1.1:8372018-8372037 None:intergenic 30.0%
! TTTGAGTTTATGTCAAACAC+TGG + chr1.1:8372981-8373000 MS.gene60298:intron 30.0%
! TTTTCGTGAATGCTGTTAAT+AGG - chr1.1:8372720-8372739 None:intergenic 30.0%
!! ATTTTAAAAAGGGTCCAGAT+GGG + chr1.1:8373244-8373263 MS.gene60298:intron 30.0%
!! TTTAAGTTTTTACAGAGACG+CGG - chr1.1:8371139-8371158 None:intergenic 30.0%
AAATGAGAGTTGAAGATGAC+GGG - chr1.1:8373033-8373052 None:intergenic 35.0%
AACAATACCAAACCCTAACT+TGG - chr1.1:8373474-8373493 None:intergenic 35.0%
AACTCCTATGCCAAAATAAG+AGG - chr1.1:8372196-8372215 None:intergenic 35.0%
AGAGAAGGAGAAGGAAAATT+GGG + chr1.1:8374176-8374195 MS.gene60298:CDS 35.0%
AGATTTATAATGCACGTTCG+AGG + chr1.1:8373840-8373859 MS.gene60298:CDS 35.0%
AGTAAGTACACATTCTGAGT+TGG - chr1.1:8373270-8373289 None:intergenic 35.0%
AGTGACAAAATAGCACTATC+GGG - chr1.1:8372618-8372637 None:intergenic 35.0%
ATACTTGAATGCAAAAGGAG+TGG + chr1.1:8373530-8373549 MS.gene60298:CDS 35.0%
ATATCTGGTTGATCTTCCTT+TGG - chr1.1:8373923-8373942 None:intergenic 35.0%
CATGAACATGATACCATTTC+AGG + chr1.1:8373308-8373327 MS.gene60298:intron 35.0%
CTGAAAGAAGTTACGTATCA+AGG - chr1.1:8372795-8372814 None:intergenic 35.0%
GAGGTATAACAAGTCTATGA+AGG + chr1.1:8373859-8373878 MS.gene60298:CDS 35.0%
TATTAGTAAACCTTCCGGTT+GGG + chr1.1:8372870-8372889 MS.gene60298:intron 35.0%
TATTGACAGAATGTAGGTTC+TGG + chr1.1:8371810-8371829 MS.gene60298:intron 35.0%
TGGTCTATTAGTAAACCTTC+CGG + chr1.1:8372865-8372884 MS.gene60298:intron 35.0%
! ACATGATACCATTTCAGGTA+TGG + chr1.1:8373313-8373332 MS.gene60298:intron 35.0%
! TCAACCAACACTTCAGATTT+TGG - chr1.1:8373887-8373906 None:intergenic 35.0%
! TTAAGTTTTTACAGAGACGC+GGG - chr1.1:8371138-8371157 None:intergenic 35.0%
!! CATTTTAAAAAGGGTCCAGA+TGG + chr1.1:8373243-8373262 MS.gene60298:intron 35.0%
!! TAACTGCAATCAGCTTGTTA+AGG + chr1.1:8372274-8372293 MS.gene60298:intron 35.0%
!! TCTGATCGATCCTCTTATTT+TGG + chr1.1:8372183-8372202 MS.gene60298:intron 35.0%
!!! ACATTTTGGGTTCGTGAATT+TGG + chr1.1:8372115-8372134 MS.gene60298:intron 35.0%
!!! CCTTGTTTGTTTTTTCTTGC+CGG + chr1.1:8371193-8371212 MS.gene60298:intron 35.0%
AAACGACACATATGCAGGAA+GGG - chr1.1:8371669-8371688 None:intergenic 40.0%
AAATAACCCCGCAATCTGAA+TGG - chr1.1:8373611-8373630 None:intergenic 40.0%
AAATCAAGAGACTCATCGAC+TGG - chr1.1:8373377-8373396 None:intergenic 40.0%
AAGAAAAGAAGAGCTGACGA+TGG + chr1.1:8373803-8373822 MS.gene60298:CDS 40.0%
AATAGCTTTCCCAGAAACGA+TGG + chr1.1:8374137-8374156 MS.gene60298:CDS 40.0%
AGAAAAGAAGAGCTGACGAT+GGG + chr1.1:8373804-8373823 MS.gene60298:CDS 40.0%
ATATTTGATCAGCGCGTTCA+TGG - chr1.1:8372363-8372382 None:intergenic 40.0%
ATTTACCTGACAAGGGTTGA+CGG - chr1.1:8371088-8371107 None:intergenic 40.0%
CAAAGAAACGACACATATGC+AGG - chr1.1:8371674-8371693 None:intergenic 40.0%
CAGAGAAGGAGAAGGAAAAT+TGG + chr1.1:8374175-8374194 MS.gene60298:CDS 40.0%
CCGGCAAGAAAAAACAAACA+AGG - chr1.1:8371196-8371215 None:intergenic 40.0%
CTATTAGTAAACCTTCCGGT+TGG + chr1.1:8372869-8372888 MS.gene60298:intron 40.0%
CTTTGTTCTACCCTAGCAAA+AGG + chr1.1:8371689-8371708 MS.gene60298:intron 40.0%
GGTATTTCACACATCCGAAT+TGG + chr1.1:8374000-8374019 MS.gene60298:intron 40.0%
TATTGCAGGCCGTTTAAATG+AGG + chr1.1:8373712-8373731 MS.gene60298:CDS 40.0%
TCATTTAAACGGCCTGCAAT+AGG - chr1.1:8373713-8373732 None:intergenic 40.0%
TGTAATTGTCGTTGTGGTGT+TGG + chr1.1:8371472-8371491 MS.gene60298:intron 40.0%
TTAGAAGAACAGCCTATTGC+AGG + chr1.1:8373698-8373717 MS.gene60298:CDS 40.0%
TTCATCTAGAAGGGCCAATT+CGG - chr1.1:8374017-8374036 None:intergenic 40.0%
TTCTACCCTAGCAAAAGGTA+AGG + chr1.1:8371694-8371713 MS.gene60298:intron 40.0%
! AGGTGAAACGAAACCGTTTT+AGG - chr1.1:8371164-8371183 None:intergenic 40.0%
! GGTGAAACGAAACCGTTTTA+GGG - chr1.1:8371163-8371182 None:intergenic 40.0%
! TGATACCATTTCAGGTATGG+AGG + chr1.1:8373316-8373335 MS.gene60298:intron 40.0%
!! GAAGTGTTGGTTGATGATGA+CGG + chr1.1:8373893-8373912 MS.gene60298:CDS 40.0%
!!! CGATCCTCTTATTTTGGCAT+AGG + chr1.1:8372189-8372208 MS.gene60298:intron 40.0%
!!! TGTTTGTTTTTTCTTGCCGG+TGG + chr1.1:8371196-8371215 MS.gene60298:intron 40.0%
CAATGTGGCTCCAAAGTTAC+TGG - chr1.1:8372388-8372407 None:intergenic 45.0%
GAAACGACACATATGCAGGA+AGG - chr1.1:8371670-8371689 None:intergenic 45.0%
GTGAGTGTCCATTCAGATTG+CGG + chr1.1:8373600-8373619 MS.gene60298:CDS 45.0%
TGAGTGTCCATTCAGATTGC+GGG + chr1.1:8373601-8373620 MS.gene60298:CDS 45.0%
TGGGAAGTTACCGTAGTATG+TGG + chr1.1:8373647-8373666 MS.gene60298:CDS 45.0%
TGTCAGTGTCGTGTAGTGTT+CGG - chr1.1:8371411-8371430 None:intergenic 45.0%
TTAGGCTTCAAACCAGCAGA+GGG - chr1.1:8373344-8373363 None:intergenic 45.0%
TTGCATTGCCTGAACAGCTA+GGG + chr1.1:8372314-8372333 MS.gene60298:intron 45.0%
! GGGTCCAAAATCTGAAGTGT+TGG + chr1.1:8373880-8373899 MS.gene60298:CDS 45.0%
! GGGTTCGTGAATTTGGTTCA+AGG + chr1.1:8372122-8372141 MS.gene60298:intron 45.0%
! TGTCATTTCCCTAGCTGTTC+AGG - chr1.1:8372325-8372344 None:intergenic 45.0%
! TTCTGATGGAAGGGCATGTT+CGG - chr1.1:8371501-8371520 None:intergenic 45.0%
! TTTTCCTTCTCCTTCTCTGC+AGG - chr1.1:8374174-8374193 None:intergenic 45.0%
!!! ATTTTTTGCCCTCTGGCGTA+TGG + chr1.1:8373627-8373646 MS.gene60298:CDS 45.0%
!!! TACGGCATCGACTTTTCAAC+AGG - chr1.1:8372896-8372915 None:intergenic 45.0%
!!! TTTTTTGCCCTCTGGCGTAT+GGG + chr1.1:8373628-8373647 MS.gene60298:CDS 45.0%
ACCCTAACAGCTTCTTCCAC+CGG - chr1.1:8371215-8371234 None:intergenic 50.0%
ACCTGAATCGCTTCCAACTC+TGG - chr1.1:8373956-8373975 None:intergenic 50.0%
ATCGAGATGACCTGCTGAAG+TGG + chr1.1:8373432-8373451 MS.gene60298:CDS 50.0%
CACGGACACTTCTGATGGAA+GGG - chr1.1:8371510-8371529 None:intergenic 50.0%
CTTGCATTGCCTGAACAGCT+AGG + chr1.1:8372313-8372332 MS.gene60298:intron 50.0%
GAAGCAGCCAAGTTAGGGTT+TGG + chr1.1:8373464-8373483 MS.gene60298:CDS 50.0%
GAGGTGAAGCAGCCAAGTTA+GGG + chr1.1:8373459-8373478 MS.gene60298:CDS 50.0%
GAGTGTCCATTCAGATTGCG+GGG + chr1.1:8373602-8373621 MS.gene60298:CDS 50.0%
GGGATCCTCCATACCTGAAA+TGG - chr1.1:8373324-8373343 None:intergenic 50.0%
GTAACTTCCCATACGCCAGA+GGG - chr1.1:8373638-8373657 None:intergenic 50.0%
GTTAGGCTTCAAACCAGCAG+AGG - chr1.1:8373345-8373364 None:intergenic 50.0%
TCGAGATGACCTGCTGAAGT+GGG + chr1.1:8373433-8373452 MS.gene60298:CDS 50.0%
TTACTCCAACCTCCGTAGCA+CGG - chr1.1:8371528-8371547 None:intergenic 50.0%
TTTCTCCGTCAACCCTTGTC+AGG + chr1.1:8371080-8371099 MS.gene60298:CDS 50.0%
! ACATTCTGAGTTGGCCCATC+TGG - chr1.1:8373261-8373280 None:intergenic 50.0%
! GACTTTTCAACAGGCCCAAC+CGG - chr1.1:8372887-8372906 None:intergenic 50.0%
! TCGACTGGTTCAGCACTGTT+AGG - chr1.1:8373362-8373381 None:intergenic 50.0%
!! CATCAGAAGTGTCCGTGCTA+CGG + chr1.1:8371513-8371532 MS.gene60298:intron 50.0%
!! TGATGATGACGGTGTGCCAA+AGG + chr1.1:8373904-8373923 MS.gene60298:CDS 50.0%
!!! CGGGGTTATTTTTTGCCCTC+TGG + chr1.1:8373620-8373639 MS.gene60298:CDS 50.0%
CGAGGTGAAGCAGCCAAGTT+AGG + chr1.1:8373458-8373477 MS.gene60298:CDS 55.0%
CGTAGCACGGACACTTCTGA+TGG - chr1.1:8371515-8371534 None:intergenic 55.0%
GACATGGCGCCATCGTTTCT+GGG - chr1.1:8374149-8374168 None:intergenic 55.0%
GCACGGACACTTCTGATGGA+AGG - chr1.1:8371511-8371530 None:intergenic 55.0%
GCCAGAGTTGGAAGCGATTC+AGG + chr1.1:8373952-8373971 MS.gene60298:CDS 55.0%
GCCGGTGGAAGAAGCTGTTA+GGG + chr1.1:8371211-8371230 MS.gene60298:intron 55.0%
GGTAACTTCCCATACGCCAG+AGG - chr1.1:8373639-8373658 None:intergenic 55.0%
TACAGAGACGCGGGAGAGAA+GGG - chr1.1:8371129-8371148 None:intergenic 55.0%
TCCTCCTGCAGAGAAGGAGA+AGG + chr1.1:8374167-8374186 MS.gene60298:CDS 55.0%
TCCTTCTCCTTCTCTGCAGG+AGG - chr1.1:8374171-8374190 None:intergenic 55.0%
TCCTTCTCTGCAGGAGGACA+TGG - chr1.1:8374165-8374184 None:intergenic 55.0%
TGCCGGTGGAAGAAGCTGTT+AGG + chr1.1:8371210-8371229 MS.gene60298:intron 55.0%
TTACAGAGACGCGGGAGAGA+AGG - chr1.1:8371130-8371149 None:intergenic 55.0%
TTTCAACAGGCCCAACCGGA+AGG - chr1.1:8372883-8372902 None:intergenic 55.0%
AGTGTCCGTGCTACGGAGGT+TGG + chr1.1:8371520-8371539 MS.gene60298:intron 60.0%
CACCTCGAACCCACTTCAGC+AGG - chr1.1:8373445-8373464 None:intergenic 60.0%
GCCATGTCCTCCTGCAGAGA+AGG + chr1.1:8374161-8374180 MS.gene60298:CDS 60.0%
GGACATGGCGCCATCGTTTC+TGG - chr1.1:8374150-8374169 None:intergenic 60.0%
GGTATGGAGGATCCCTCTGC+TGG + chr1.1:8373329-8373348 MS.gene60298:intron 60.0%
! GACCTGCTGAAGTGGGTTCG+AGG + chr1.1:8373440-8373459 MS.gene60298:CDS 60.0%
!! CAGAAGTGTCCGTGCTACGG+AGG + chr1.1:8371516-8371535 MS.gene60298:intron 60.0%
GAGACGCGGGAGAGAAGGGA+AGG - chr1.1:8371125-8371144 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 8371059 8374230 8371059 ID=MS.gene60298
chr1.1 mRNA 8371059 8374230 8371059 ID=MS.gene60298.t1;Parent=MS.gene60298
chr1.1 exon 8371059 8371101 8371059 ID=MS.gene60298.t1.exon1;Parent=MS.gene60298.t1
chr1.1 CDS 8371059 8371101 8371059 ID=cds.MS.gene60298.t1;Parent=MS.gene60298.t1
chr1.1 exon 8373330 8373973 8373330 ID=MS.gene60298.t1.exon2;Parent=MS.gene60298.t1
chr1.1 CDS 8373330 8373973 8373330 ID=cds.MS.gene60298.t1;Parent=MS.gene60298.t1
chr1.1 exon 8374078 8374230 8374078 ID=MS.gene60298.t1.exon3;Parent=MS.gene60298.t1
chr1.1 CDS 8374078 8374230 8374078 ID=cds.MS.gene60298.t1;Parent=MS.gene60298.t1
Gene Sequence

>MS.gene60298

ATGACGGATCGACACAAACATTTTCTCCGTCAACCCTTGTCAGGTAAATATTCACTACTCGTTCCTTCCCTTCTCTCCCGCGTCTCTGTAAAAACTTAAATCCCTAAAACGGTTTCGTTTCACCTAAATTTACACCTTGTTTGTTTTTTCTTGCCGGTGGAAGAAGCTGTTAGGGTTTTTATCTTACTCGATTTTTCTAGATCTAAATGTTAGGGTTTTCAGTACATGCATTTTCTACTTTCATATCCAATGTAATTACTTTTCAATTTGTTTTATTTTCATATATCATGATCTTGGTACTTCAATTTTGAAAATATTTCAAGAGGAGTATGAAGCACATACACTGACACCGAACACTACACGACACTGACATGTTAGTATCGTTCAATTTTTAAAAAAATTAATTAATTGAATGTAATTGTCGTTGTGGTGTTGGACACCGAACATGCCCTTCCATCAGAAGTGTCCGTGCTACGGAGGTTGGAGTAATTCTCATATATTTTCTTTTTGAAATTCTAGTCGTGCTTTTTATTTTGTTTTATTTCCGCAAATTTGGTGTTAAGATTTGCAATTGCAAAACTCAAGGGTAAAATTTTGGGTTTCATTTCCCTTCCTGCATATGTGTCGTTTCTTTGTTCTACCCTAGCAAAAGGTAAGGTTTTTTTTTTTTTTTTTCTGTTTTGTTGTATCTTATTATTCAAATCATTCTTTGTTTCAGACTCTGTTTTTATTATCAAGTTTGTTGGATGAATATTGACAGAATGTAGGTTCTGGCTGATATTTAGCTTTTGTTGTATCTTATTATTCATATTTTTCTTTGTTTTAGACTTCATGTGTTTTTTATTATCAAGTTTGTAGGATGAATATTGGAAGAGTGTAGATTGTGACTGAGATTTAGCTCTGTTCTTGTATTTGTTCTTTAAACATGTGTAAAATAATTCTTCTTGTTAATTAAACCCAAAAACACATTGGTTCAGAATGTTATGATCCTTGTGTTATATTTGGTTGTACATTGTTCTTTTGTTCTAGTACAAGTCTTTAATTTATAAGACAATAACATTTTGGGTTCGTGAATTTGGTTCAAGGAAATTAAGAATGTTCTGGTAAATTATTTAGTTTTGGAGTCTGATCGATCCTCTTATTTTGGCATAGGAGTTAAGTGTGTAATTTTTTTATGCATAGAGATGAAGTCTTGAAACAAATCAACAAATTGGTTAACTGCAATCAGCTTGTTAAGGTGATATTATTAATTTGCTTGCATTGCCTGAACAGCTAGGGAAATGACATCAAGTGTCAATATTCCATGAACGCGCTGATCAAATATCACCAGTAACTTTGGAGCCACATTGAACACTGTATTTTTATTCTAAGTATTTGGAGAGAGAACTATGCATTTTTATAAGTGTGGAATCATATTTGCTTTTTATTTTTACTGTTTCATCATCGGAACTTCATTTTTACAAATGCAAAATGGGATGTGCTTTGTAATTTTATAAATGCAGGATATTAGAAAAGCAATATTTTATAGAATTTTAAAACAGGTTTCTAGTACTCAACCCGATAGTGCTATTTTGTCACTATTACTGTATAATTTTTATTTTATGTAAATTATTTTTCTTACATGTTTTTAGCTGTTGCATTTGCCAAATTTTAATTTTCCTATTAACAGCATTCACGAAAAAAGTTGATTTTCTGTTTAGTGAATTTTCTCAATTGGGTAAATGAATATGCAGCCTTGATACGTAACTTCTTTCAGTATGGATTTCATTATATGCAGAGAATGTTATCAAGTATGTAAATTGATGTTGGTCTATTAGTAAACCTTCCGGTTGGGCCTGTTGAAAAGTCGATGCCGTATGACTTGTAATTAACTTTGTAGTTATAACAGGAATATTAGCCAAATTTTGAGTGTTTATGTTATTTTTGAGTTTATGTCAAACACTGGAAAGTATATACATGATATATTTGAAACCCGTCATCTTCAACTCTCATTTAAAATCACTCTAAATAAAACCCTTATTTTACAAAATGTGTGTTTCATTACTCATTCCTATCATCCATTAATTATATTTGCACAATTTTCATTTGAAAGCAAATGAAACGTGACTCTAATTTCCTTCTAATTGTTTCTTTTGCGTTTTGTTTTTACGTATTACTGGTATCGTTTGAATAAGCCAATCTTTTCATTTTAAAAAGGGTCCAGATGGGCCAACTCAGAATGTGTACTTACTGTATAAGCCTATTTTTCTCATGAACATGATACCATTTCAGGTATGGAGGATCCCTCTGCTGGTTTGAAGCCTAACAGTGCTGAACCAGTCGATGAGTCTCTTGATTTCGCTAAACACTTTGCCACCGATAAAGAATTTCGTAATCGAGATGACCTGCTGAAGTGGGTTCGAGGTGAAGCAGCCAAGTTAGGGTTTGGTATTGTTATTTCAAAGTCAAATAATAGAGGAACACAAACTCTTATACTTGAATGCAAAAGGAGTGGTGTATATAAGAAGCAGTCGAAACGCCAAGACACAAGATTCAAAAAATGTGAGTGTCCATTCAGATTGCGGGGTTATTTTTTGCCCTCTGGCGTATGGGAAGTTACCGTAGTATGTGGAAAACACAATCATGAGATGATGGAAAATTTAGAAGAACAGCCTATTGCAGGCCGTTTAAATGAGGAAGAGATGAAACTCGTTCATGAGATGACAAATAACACTGTCCGTCCAAAAAATATTCTTATGACTTTGAAGAAAAGAAGAGCTGACGATGGGATTACTATCAAGCAGATTTATAATGCACGTTCGAGGTATAACAAGTCTATGAAGGGTCCAAAATCTGAAGTGTTGGTTGATGATGACGGTGTGCCAAAGGAAGATCAACCAGATATATCTATTTTGCCAGAGTTGGAAGCGATTCAGGTTTGATTCAATAGTAATTCTGTTCTGGTATTTCACACATCCGAATTGGCCCTTCTAGATGAAACAAATTCTCATTAAATTTTTAATTTTTTTTTAATTTTCAGATTCGGTTTAACAATGCTGATTACAATACGAAGATACTTATTAAAGAGCAGCTGCATCAAATAGCTTTCCCAGAAACGATGGCGCCATGTCCTCCTGCAGAGAAGGAGAAGGAAAATTGGGACTTTTATGATTTAGAAACTTGTGAAATATGA

Protein sequence

>MS.gene60298.t1

MTDRHKHFLRQPLSGMEDPSAGLKPNSAEPVDESLDFAKHFATDKEFRNRDDLLKWVRGEAAKLGFGIVISKSNNRGTQTLILECKRSGVYKKQSKRQDTRFKKCECPFRLRGYFLPSGVWEVTVVCGKHNHEMMENLEEQPIAGRLNEEEMKLVHEMTNNTVRPKNILMTLKKRRADDGITIKQIYNARSRYNKSMKGPKSEVLVDDDGVPKEDQPDISILPELEAIQIRFNNADYNTKILIKEQLHQIAFPETMAPCPPAEKEKENWDFYDLETCEI