Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60299.t1 | XP_013465800.1 | 99.5 | 381 | 2 | 0 | 1 | 381 | 1 | 381 | 1.10E-208 | 735.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60299.t1 | Q03730 | 32.2 | 376 | 228 | 9 | 5 | 372 | 12 | 368 | 2.3e-42 | 174.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60299.t1 | A0A072VDI4 | 99.5 | 381 | 2 | 0 | 1 | 381 | 1 | 381 | 7.7e-209 | 735.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050426 | MS.gene60299 | 0.802401 | 5.71E-49 | -1.69E-46 |
| MS.gene051171 | MS.gene60299 | -0.80995 | 1.47E-50 | -1.69E-46 |
| MS.gene051242 | MS.gene60299 | -0.810355 | 1.20E-50 | -1.69E-46 |
| MS.gene053330 | MS.gene60299 | -0.812488 | 4.13E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene60299 | -0.802651 | 5.07E-49 | -1.69E-46 |
| MS.gene056633 | MS.gene60299 | -0.819618 | 1.06E-52 | -1.69E-46 |
| MS.gene056664 | MS.gene60299 | -0.824857 | 6.43E-54 | -1.69E-46 |
| MS.gene058276 | MS.gene60299 | -0.802268 | 6.08E-49 | -1.69E-46 |
| MS.gene058746 | MS.gene60299 | -0.807932 | 3.97E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene60299 | -0.804028 | 2.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60299.t1 | MTR_1g012790 | 99.475 | 381 | 2 | 0 | 1 | 381 | 1 | 381 | 0.0 | 767 |
| MS.gene60299.t1 | MTR_1g012790 | 99.333 | 300 | 2 | 0 | 82 | 381 | 1 | 300 | 0.0 | 601 |
| MS.gene60299.t1 | MTR_7g058520 | 28.989 | 376 | 226 | 13 | 26 | 371 | 34 | 398 | 1.38e-28 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60299.t1 | AT4G32140 | 73.657 | 391 | 89 | 6 | 5 | 381 | 4 | 394 | 0.0 | 559 |
| MS.gene60299.t1 | AT3G07080 | 26.980 | 404 | 245 | 11 | 5 | 371 | 7 | 397 | 8.89e-27 | 111 |
Find 92 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTTCTTTCAGACTATTTC+TGG | 0.204238 | 1.1:-8360772 | MS.gene60299:intron |
| CAAAAGCTGTTTGGATATAT+TGG | 0.204733 | 1.1:-8361180 | MS.gene60299:CDS |
| ACAAAGGAAATTGCTACTTA+TGG | 0.246035 | 1.1:-8362466 | MS.gene60299:CDS |
| TAGGTACTGTTGTTATCATC+TGG | 0.272041 | 1.1:-8364071 | MS.gene60299:CDS |
| ACTCCCCTTGTGGCCACTTT+GGG | 0.275531 | 1.1:-8360644 | MS.gene60299:CDS |
| ATGTCCTATGGTCTATTTAC+TGG | 0.282086 | 1.1:-8361340 | MS.gene60299:intron |
| CCTCCCAATAGCATTCATTA+AGG | 0.294336 | 1.1:-8362698 | MS.gene60299:CDS |
| AAGGCTGGGTTGTTTCTTAT+AGG | 0.299851 | 1.1:-8364090 | MS.gene60299:CDS |
| CAATCCTTAATGAATGCTAT+TGG | 0.302206 | 1.1:+8362694 | None:intergenic |
| TTGTGTTAACAGGTATTTGC+TGG | 0.303613 | 1.1:-8359952 | MS.gene60299:intron |
| AACTCCCCTTGTGGCCACTT+TGG | 0.318536 | 1.1:-8360645 | MS.gene60299:CDS |
| TAAATATAATGAAACTAGTT+TGG | 0.358884 | 1.1:-8362512 | MS.gene60299:CDS |
| GCTGTCTTGGTCAGCATGAC+CGG | 0.385354 | 1.1:-8362168 | MS.gene60299:CDS |
| GCATGTATAATGCTGAATAA+TGG | 0.388353 | 1.1:+8360567 | None:intergenic |
| CACTATTCCTCTTGCTATGA+TGG | 0.389037 | 1.1:-8360612 | MS.gene60299:CDS |
| CTGTCTTGGTCAGCATGACC+GGG | 0.400569 | 1.1:-8362167 | MS.gene60299:CDS |
| GATATAGACCTTTCAACTCT+TGG | 0.402976 | 1.1:-8362556 | MS.gene60299:CDS |
| CGATTATAAGCAGCCATTTG+TGG | 0.406777 | 1.1:-8362755 | MS.gene60299:CDS |
| AGATTGGGCGACAAAGAGAT+TGG | 0.407802 | 1.1:-8359908 | MS.gene60299:CDS |
| AAGAACCACTTCATCCATTC+TGG | 0.413869 | 1.1:+8360814 | None:intergenic |
| CACAAATGGCTGCTTATAAT+CGG | 0.418029 | 1.1:+8362756 | None:intergenic |
| AATCCTTAATGAATGCTATT+GGG | 0.420479 | 1.1:+8362695 | None:intergenic |
| ACAGTATTGTCATCTACTTC+AGG | 0.423690 | 1.1:-8362255 | MS.gene60299:CDS |
| GTTGACGTGCAAAAGCTGTT+TGG | 0.432446 | 1.1:-8361189 | MS.gene60299:CDS |
| CGGGGTTGCCATGACAACTC+TGG | 0.432955 | 1.1:-8362148 | MS.gene60299:CDS |
| GATAGCAAATCTTTCAGATT+GGG | 0.433970 | 1.1:-8359923 | MS.gene60299:CDS |
| ATCAAAAGTAGTTGCTGTCT+TGG | 0.435118 | 1.1:-8362181 | MS.gene60299:CDS |
| CCGAGATATGTCACCACAAA+TGG | 0.437294 | 1.1:+8362742 | None:intergenic |
| CTTCTTTCAGCCATGTCCTA+TGG | 0.438314 | 1.1:-8361352 | MS.gene60299:CDS |
| AATGGACAGCGCTCTCTTGT+TGG | 0.443121 | 1.1:-8361388 | MS.gene60299:CDS |
| TTCTGGCGAAGAAGGTGAAC+GGG | 0.443641 | 1.1:-8361211 | MS.gene60299:CDS |
| TATTCAGCATTATACATGCT+TGG | 0.446661 | 1.1:-8360563 | MS.gene60299:CDS |
| TGATAGCAAATCTTTCAGAT+TGG | 0.460487 | 1.1:-8359924 | MS.gene60299:CDS |
| TGACAACTCTGGGCAAGACT+TGG | 0.464560 | 1.1:-8362137 | MS.gene60299:CDS |
| GTTCTTGCAAATGGACTTGT+TGG | 0.469958 | 1.1:-8360797 | MS.gene60299:CDS |
| AGGTACTGTTGTTATCATCT+GGG | 0.471977 | 1.1:-8364070 | MS.gene60299:CDS |
| TTGCTCAGTCTGGCCATTGT+CGG | 0.472274 | 1.1:-8360876 | MS.gene60299:intron |
| CAATAGCATTCATTAAGGAT+TGG | 0.479937 | 1.1:-8362693 | MS.gene60299:CDS |
| AATGCAGAAAGACTTTGAAA+TGG | 0.481429 | 1.1:-8362608 | MS.gene60299:CDS |
| TCTATAACTTTCTTAAACAC+CGG | 0.481506 | 1.1:-8362669 | MS.gene60299:CDS |
| GATTGGGCGACAAAGAGATT+GGG | 0.489020 | 1.1:-8359907 | MS.gene60299:CDS |
| CCAGGGCACTCTGCGTCGTA+TGG | 0.491982 | 1.1:-8360670 | MS.gene60299:intron |
| AAACTTAGGTTCAATTCCTA+AGG | 0.495621 | 1.1:+8360853 | None:intergenic |
| TGTTTACACTTGTAGCGCTA+TGG | 0.496686 | 1.1:-8361155 | MS.gene60299:CDS |
| CCATTTGTGGTGACATATCT+CGG | 0.499618 | 1.1:-8362742 | MS.gene60299:CDS |
| GTCTGGCCATTGTCGGCCTT+AGG | 0.506848 | 1.1:-8360869 | MS.gene60299:CDS |
| TGTGTTAACAGGTATTTGCT+GGG | 0.511890 | 1.1:-8359951 | MS.gene60299:intron |
| GATGAAGTGGTTCTTGCAAA+TGG | 0.516520 | 1.1:-8360806 | MS.gene60299:CDS |
| GAGTGCGGAATCGCAAACTT+AGG | 0.519656 | 1.1:+8360839 | None:intergenic |
| AAAGACTTTGAAATGGAACT+AGG | 0.520018 | 1.1:-8362601 | MS.gene60299:CDS |
| GACAACTCTGGGCAAGACTT+GGG | 0.523756 | 1.1:-8362136 | MS.gene60299:CDS |
| GGGGTTGCCATGACAACTCT+GGG | 0.526807 | 1.1:-8362147 | MS.gene60299:CDS |
| ATACATGCTTGGATCAGCTC+AGG | 0.536294 | 1.1:-8360552 | MS.gene60299:intron |
| AATGGGTAGTTTGAGATACA+AGG | 0.538250 | 1.1:-8364109 | MS.gene60299:CDS |
| AAACACCGGTCTTCTAAAAG+TGG | 0.541403 | 1.1:-8362655 | MS.gene60299:CDS |
| TCATTATATTTAGCCACCAA+TGG | 0.542103 | 1.1:+8362523 | None:intergenic |
| TCTTGGAGAGATAGCACCAT+TGG | 0.547273 | 1.1:-8362539 | MS.gene60299:CDS |
| CATAGGACATGGCTGAAAGA+AGG | 0.549347 | 1.1:+8361353 | None:intergenic |
| ACCTCTGTTATAAACCAGAT+AGG | 0.552608 | 1.1:+8362430 | None:intergenic |
| CTCTGCCAGAATGGATGAAG+TGG | 0.556106 | 1.1:-8360819 | MS.gene60299:CDS |
| TCTTGCTATGATGGCTGACA+TGG | 0.559140 | 1.1:-8360603 | MS.gene60299:CDS |
| AAGACTTTGAAATGGAACTA+GGG | 0.560811 | 1.1:-8362600 | MS.gene60299:CDS |
| GGTAGTTTGAGATACAAGGC+TGG | 0.567672 | 1.1:-8364105 | MS.gene60299:CDS |
| GATTCCGCACTCTGCCAGAA+TGG | 0.568923 | 1.1:-8360828 | MS.gene60299:CDS |
| ATGCTGAATAATGGCGACCA+TGG | 0.574214 | 1.1:+8360576 | None:intergenic |
| AGTCTTGCCCAGAGTTGTCA+TGG | 0.578695 | 1.1:+8362140 | None:intergenic |
| TGAAATGGAACTAGGGAATG+TGG | 0.579208 | 1.1:-8362593 | MS.gene60299:CDS |
| ACATGCCCAAAGTGGCCACA+AGG | 0.585445 | 1.1:+8360639 | None:intergenic |
| TAATGAAACTAGTTTGGCAA+AGG | 0.593482 | 1.1:-8362506 | MS.gene60299:CDS |
| TGGAGAGATAGCACCATTGG+TGG | 0.594581 | 1.1:-8362536 | MS.gene60299:CDS |
| TTTCTGGCGAAGAAGGTGAA+CGG | 0.596044 | 1.1:-8361212 | MS.gene60299:CDS |
| CTATCTCTCCAAGAGTTGAA+AGG | 0.601207 | 1.1:+8362548 | None:intergenic |
| ATATCTCGGAGCTTCTCTCA+TGG | 0.603748 | 1.1:-8362728 | MS.gene60299:CDS |
| ATGTCAGCCATCATAGCAAG+AGG | 0.609091 | 1.1:+8360605 | None:intergenic |
| ACCTATCTGGTTTATAACAG+AGG | 0.609256 | 1.1:-8362431 | MS.gene60299:intron |
| CTAACCAGTAAATAGACCAT+AGG | 0.614259 | 1.1:+8361336 | None:intergenic |
| CTCCTCTGCTGAAGTCACCC+AGG | 0.614844 | 1.1:-8364046 | MS.gene60299:intron |
| ATTAAATTGCGAGTCATCTG+CGG | 0.615941 | 1.1:+8362113 | None:intergenic |
| TTACACTTGTAGCGCTATGG+TGG | 0.616387 | 1.1:-8361152 | MS.gene60299:CDS |
| CAGAGTTGTCATGGCAACCC+CGG | 0.616550 | 1.1:+8362149 | None:intergenic |
| ATGCCCAAAGTGGCCACAAG+GGG | 0.623395 | 1.1:+8360641 | None:intergenic |
| CGTATGGACAACTCCCCTTG+TGG | 0.623612 | 1.1:-8360654 | MS.gene60299:CDS |
| CATGCCCAAAGTGGCCACAA+GGG | 0.624135 | 1.1:+8360640 | None:intergenic |
| GTAGTTTGAGATACAAGGCT+GGG | 0.626160 | 1.1:-8364104 | MS.gene60299:CDS |
| TCAATTCCTAAGGCCGACAA+TGG | 0.628466 | 1.1:+8360863 | None:intergenic |
| AGTGAGTGACATGCCCAAAG+TGG | 0.633604 | 1.1:+8360631 | None:intergenic |
| TACCTGGGTGACTTCAGCAG+AGG | 0.640381 | 1.1:+8364044 | None:intergenic |
| CCTTAATGAATGCTATTGGG+AGG | 0.648867 | 1.1:+8362698 | None:intergenic |
| TCATCCATTCTGGCAGAGTG+CGG | 0.658428 | 1.1:+8360824 | None:intergenic |
| AGTAAATAGACCATAGGACA+TGG | 0.668086 | 1.1:+8361342 | None:intergenic |
| ATGGCTGACATGGTAATCCA+TGG | 0.681409 | 1.1:-8360593 | MS.gene60299:CDS |
| TGTCTTGGTCAGCATGACCG+GGG | 0.713176 | 1.1:-8362166 | MS.gene60299:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAATAATTTTACATCA+TGG | + | chr1.1:8360010-8360029 | None:intergenic | 10.0% |
| !!! | GTTTTTTTGTTATATTTTTT+AGG | - | chr1.1:8360088-8360107 | MS.gene60299:intron | 10.0% |
| !!! | TCAATTTTTTTTTTTAAACT+CGG | - | chr1.1:8360307-8360326 | MS.gene60299:intron | 10.0% |
| !! | TAAATATAATGAAACTAGTT+TGG | - | chr1.1:8361496-8361515 | MS.gene60299:intron | 15.0% |
| !! | TTAATTATGTCATAGTATAT+AGG | - | chr1.1:8360157-8360176 | MS.gene60299:intron | 15.0% |
| !! | TTGAAAAAAAATCAAAGTAT+AGG | + | chr1.1:8362304-8362323 | None:intergenic | 15.0% |
| !!! | ATTTAATTTTCTCATAAGTT+TGG | - | chr1.1:8360022-8360041 | MS.gene60299:intron | 15.0% |
| !!! | TCTTTGTAATACTATTTTTT+GGG | - | chr1.1:8362570-8362589 | MS.gene60299:CDS | 15.0% |
| !! | AAAAGATGAAAAATTTACCT+GGG | + | chr1.1:8359982-8360001 | None:intergenic | 20.0% |
| !! | AAAGAACTTATTGTTTACAT+TGG | + | chr1.1:8360764-8360783 | None:intergenic | 20.0% |
| !! | AATCATTAACTATAACTAGA+TGG | + | chr1.1:8363903-8363922 | None:intergenic | 20.0% |
| !! | TAAAAGGAATTCAACAATAT+TGG | - | chr1.1:8362216-8362235 | MS.gene60299:CDS | 20.0% |
| !! | TAATTGTACAACAATCATTT+AGG | - | chr1.1:8360193-8360212 | MS.gene60299:intron | 20.0% |
| !! | TCAATTCAATTTAATGATTG+TGG | - | chr1.1:8360131-8360150 | MS.gene60299:intron | 20.0% |
| !! | TCTAGTTATAGTTAATGATT+TGG | - | chr1.1:8363903-8363922 | MS.gene60299:intron | 20.0% |
| !! | TTGTTGTACAATTAACAATA+AGG | + | chr1.1:8360187-8360206 | None:intergenic | 20.0% |
| !!! | AGTTTGTGTTTTTTCTATAA+AGG | - | chr1.1:8360575-8360594 | MS.gene60299:CDS | 20.0% |
| !!! | CATTTTCTTTAAATTATTGC+TGG | - | chr1.1:8363749-8363768 | MS.gene60299:intron | 20.0% |
| !!! | CTCTTTGTAATACTATTTTT+TGG | - | chr1.1:8362569-8362588 | MS.gene60299:CDS | 20.0% |
| !!! | TAGGTGGAAATATTTTTAAA+AGG | - | chr1.1:8362200-8362219 | MS.gene60299:CDS | 20.0% |
| !!! | TGTATCTTTGTTATTTATTC+TGG | - | chr1.1:8361624-8361643 | MS.gene60299:intron | 20.0% |
| ! | AAAAATTCCTATTTACCTCT+TGG | - | chr1.1:8363602-8363621 | MS.gene60299:intron | 25.0% |
| ! | AACAATATTGGATACTTTCT+TGG | - | chr1.1:8362228-8362247 | MS.gene60299:CDS | 25.0% |
| ! | AATCCTTAATGAATGCTATT+GGG | + | chr1.1:8361316-8361335 | None:intergenic | 25.0% |
| ! | ACAAAGGGATCAATTATATT+AGG | + | chr1.1:8362368-8362387 | None:intergenic | 25.0% |
| ! | ACAATATTGGATACTTTCTT+GGG | - | chr1.1:8362229-8362248 | MS.gene60299:CDS | 25.0% |
| ! | ACATCATATAGGAAATGTAA+TGG | - | chr1.1:8361653-8361672 | MS.gene60299:intron | 25.0% |
| ! | AGAAAAAGAACTTACTACAA+AGG | - | chr1.1:8361526-8361545 | MS.gene60299:intron | 25.0% |
| ! | AGTTATGGTGCAAAATATTA+AGG | - | chr1.1:8362508-8362527 | MS.gene60299:CDS | 25.0% |
| ! | ATAGAATAACGAAGCTAATT+TGG | + | chr1.1:8361952-8361971 | None:intergenic | 25.0% |
| ! | ATATAATTGATCCCTTTGTA+TGG | - | chr1.1:8362369-8362388 | MS.gene60299:intron | 25.0% |
| ! | ATCAGAATTTCAAATTGCAA+TGG | + | chr1.1:8361126-8361145 | None:intergenic | 25.0% |
| ! | ATCGATTGACATCTTAAAAT+TGG | + | chr1.1:8361976-8361995 | None:intergenic | 25.0% |
| ! | ATTAACATGCATAAAGTCAA+AGG | + | chr1.1:8363873-8363892 | None:intergenic | 25.0% |
| ! | ATTATGTCATAGTATATAGG+AGG | - | chr1.1:8360160-8360179 | MS.gene60299:intron | 25.0% |
| ! | CAAAGGGATCAATTATATTA+GGG | + | chr1.1:8362367-8362386 | None:intergenic | 25.0% |
| ! | CATTATTCATCTAGATTATC+TGG | + | chr1.1:8362735-8362754 | None:intergenic | 25.0% |
| ! | GAAAAGATGAAAAATTTACC+TGG | + | chr1.1:8359983-8360002 | None:intergenic | 25.0% |
| ! | GGATACTTCTTAGTAATAAT+TGG | - | chr1.1:8360723-8360742 | MS.gene60299:intron | 25.0% |
| ! | TACTTCTTAGTAATAATTGG+AGG | - | chr1.1:8360726-8360745 | MS.gene60299:intron | 25.0% |
| ! | TATTAGGGATATAGTCATAT+AGG | + | chr1.1:8362352-8362371 | None:intergenic | 25.0% |
| ! | TCTATAACTTTCTTAAACAC+CGG | - | chr1.1:8361339-8361358 | MS.gene60299:intron | 25.0% |
| ! | TGTATTAATATACTCATGTG+AGG | + | chr1.1:8362418-8362437 | None:intergenic | 25.0% |
| ! | TTATATATAATATGCCACTG+CGG | - | chr1.1:8360915-8360934 | MS.gene60299:intron | 25.0% |
| !! | AATTTGAAATTCTGATCAAG+TGG | - | chr1.1:8361130-8361149 | MS.gene60299:intron | 25.0% |
| !! | ACATATTGATGGAATTGTTT+TGG | - | chr1.1:8364031-8364050 | MS.gene60299:intron | 25.0% |
| !! | ATTATGTTGATAGAGATAGA+GGG | - | chr1.1:8362448-8362467 | MS.gene60299:CDS | 25.0% |
| !! | GTTCTTCTTAAAAAGTTTTC+TGG | - | chr1.1:8362780-8362799 | MS.gene60299:intron | 25.0% |
| !!! | CATAGCTAATGTTTTAGTTA+TGG | - | chr1.1:8362493-8362512 | MS.gene60299:CDS | 25.0% |
| AAACACAAAAACCAAGTTAG+AGG | + | chr1.1:8362963-8362982 | None:intergenic | 30.0% | |
| AAACTTAGGTTCAATTCCTA+AGG | + | chr1.1:8363158-8363177 | None:intergenic | 30.0% | |
| ACAAAACATTTAACACCAAG+AGG | + | chr1.1:8363620-8363639 | None:intergenic | 30.0% | |
| ACATCAAACATGCATTCAAT+AGG | + | chr1.1:8363686-8363705 | None:intergenic | 30.0% | |
| ATCATTCATGATACAAAGCT+TGG | + | chr1.1:8361196-8361215 | None:intergenic | 30.0% | |
| ATTAATATACTCATGTGAGG+AGG | + | chr1.1:8362415-8362434 | None:intergenic | 30.0% | |
| CAAAAGCTGTTTGGATATAT+TGG | - | chr1.1:8362828-8362847 | MS.gene60299:intron | 30.0% | |
| CAACTTATGCAACATATAAC+TGG | + | chr1.1:8360953-8360972 | None:intergenic | 30.0% | |
| CAATAGCATTCATTAAGGAT+TGG | - | chr1.1:8361315-8361334 | MS.gene60299:intron | 30.0% | |
| CAATCCTTAATGAATGCTAT+TGG | + | chr1.1:8361317-8361336 | None:intergenic | 30.0% | |
| CTCTATCTCTATCAACATAA+TGG | + | chr1.1:8362449-8362468 | None:intergenic | 30.0% | |
| GATAGCAAATCTTTCAGATT+GGG | - | chr1.1:8364085-8364104 | MS.gene60299:CDS | 30.0% | |
| GCATGTATAATGCTGAATAA+TGG | + | chr1.1:8363444-8363463 | None:intergenic | 30.0% | |
| TAATCTAGACGAAATTTCCT+AGG | + | chr1.1:8363941-8363960 | None:intergenic | 30.0% | |
| TATTCAGCATTATACATGCT+TGG | - | chr1.1:8363445-8363464 | MS.gene60299:intron | 30.0% | |
| TCATTATATTTAGCCACCAA+TGG | + | chr1.1:8361488-8361507 | None:intergenic | 30.0% | |
| TCCTTTAAATCAAAGCAATG+AGG | + | chr1.1:8360880-8360899 | None:intergenic | 30.0% | |
| TCTGGTATATGACATCATAT+AGG | - | chr1.1:8361642-8361661 | MS.gene60299:intron | 30.0% | |
| TGATAGCAAATCTTTCAGAT+TGG | - | chr1.1:8364084-8364103 | MS.gene60299:CDS | 30.0% | |
| TTAATAGCCAGTTGACAATA+TGG | + | chr1.1:8363966-8363985 | None:intergenic | 30.0% | |
| TTGATATTTGTGTTCAGCAA+TGG | - | chr1.1:8362602-8362621 | MS.gene60299:CDS | 30.0% | |
| TTTAACACCAAGAGGTAAAT+AGG | + | chr1.1:8363612-8363631 | None:intergenic | 30.0% | |
| ! | AAGATGTATCTGAGAAGTAT+AGG | - | chr1.1:8362181-8362200 | MS.gene60299:CDS | 30.0% |
| ! | AATGCAGAAAGACTTTGAAA+TGG | - | chr1.1:8361400-8361419 | MS.gene60299:intron | 30.0% |
| ! | ACAAAGGAAATTGCTACTTA+TGG | - | chr1.1:8361542-8361561 | MS.gene60299:intron | 30.0% |
| ! | CATTATGTTGATAGAGATAG+AGG | - | chr1.1:8362447-8362466 | MS.gene60299:CDS | 30.0% |
| ! | CGTTTTTGTTGACATATTGA+TGG | - | chr1.1:8364020-8364039 | MS.gene60299:intron | 30.0% |
| ! | CTTTTCATTGGTGTGTTAAT+GGG | - | chr1.1:8361786-8361805 | MS.gene60299:intron | 30.0% |
| ! | GATCAAGTGGTATCTTTTAT+TGG | - | chr1.1:8361143-8361162 | MS.gene60299:intron | 30.0% |
| ! | GGCTAAGAATGATTTAGTTT+AGG | - | chr1.1:8360622-8360641 | MS.gene60299:CDS | 30.0% |
| ! | TAATGAAACTAGTTTGGCAA+AGG | - | chr1.1:8361502-8361521 | MS.gene60299:intron | 30.0% |
| ! | TCAATTAAAATTTTCTGCGC+AGG | - | chr1.1:8361220-8361239 | MS.gene60299:CDS | 30.0% |
| ! | TCCTCATTGCTTTGATTTAA+AGG | - | chr1.1:8360876-8360895 | MS.gene60299:intron | 30.0% |
| ! | TCTTTTCATTGGTGTGTTAA+TGG | - | chr1.1:8361785-8361804 | MS.gene60299:intron | 30.0% |
| !! | AAAGACTTTGAAATGGAACT+AGG | - | chr1.1:8361407-8361426 | MS.gene60299:intron | 30.0% |
| !! | AAGACTTTGAAATGGAACTA+GGG | - | chr1.1:8361408-8361427 | MS.gene60299:intron | 30.0% |
| !! | ACAATAAGTTCTTTTGAGAG+AGG | - | chr1.1:8360770-8360789 | MS.gene60299:intron | 30.0% |
| !! | GAATCTTTGAAACAGACATT+GGG | + | chr1.1:8363802-8363821 | None:intergenic | 30.0% |
| !! | TGAATCTTTGAAACAGACAT+TGG | + | chr1.1:8363803-8363822 | None:intergenic | 30.0% |
| !! | TGTCAATCGATTTTTCTAGT+AGG | - | chr1.1:8361985-8362004 | MS.gene60299:intron | 30.0% |
| !! | TTTTTCCACTTTTAGAAGAC+CGG | + | chr1.1:8361361-8361380 | None:intergenic | 30.0% |
| !!! | CTTGGTGTTAAATGTTTTGT+TGG | - | chr1.1:8363620-8363639 | MS.gene60299:intron | 30.0% |
| !!! | TTTTTTCTTTTTGCTCAGTC+TGG | - | chr1.1:8363122-8363141 | MS.gene60299:intron | 30.0% |
| AAGAAAATGATTGAAACCCC+CGG | + | chr1.1:8360537-8360556 | None:intergenic | 35.0% | |
| ACAACAATCATTTAGGAAGC+TGG | - | chr1.1:8360200-8360219 | MS.gene60299:intron | 35.0% | |
| ACAGTATTGTCATCTACTTC+AGG | - | chr1.1:8361753-8361772 | MS.gene60299:intron | 35.0% | |
| ACCTCTGTTATAAACCAGAT+AGG | + | chr1.1:8361581-8361600 | None:intergenic | 35.0% | |
| AGTAAATAGACCATAGGACA+TGG | + | chr1.1:8362669-8362688 | None:intergenic | 35.0% | |
| AGTGGAAAAAATGCAGAAAG+CGG | - | chr1.1:8361371-8361390 | MS.gene60299:CDS | 35.0% | |
| AGTTAGAGGAGCAAATGAAA+AGG | + | chr1.1:8362949-8362968 | None:intergenic | 35.0% | |
| AGTTTGTAACAGTAGCCAAT+CGG | - | chr1.1:8363527-8363546 | MS.gene60299:intron | 35.0% | |
| ATAAGTCATCCTATCATCGA+TGG | + | chr1.1:8363648-8363667 | None:intergenic | 35.0% | |
| ATCAAAAGTAGTTGCTGTCT+TGG | - | chr1.1:8361827-8361846 | MS.gene60299:intron | 35.0% | |
| ATGTCCTATGGTCTATTTAC+TGG | - | chr1.1:8362668-8362687 | MS.gene60299:CDS | 35.0% | |
| ATTAAATTGCGAGTCATCTG+CGG | + | chr1.1:8361898-8361917 | None:intergenic | 35.0% | |
| ATTAAGGACCGACTAATCTA+GGG | - | chr1.1:8360337-8360356 | MS.gene60299:intron | 35.0% | |
| CACAAATGGCTGCTTATAAT+CGG | + | chr1.1:8361255-8361274 | None:intergenic | 35.0% | |
| CTAACCAGTAAATAGACCAT+AGG | + | chr1.1:8362675-8362694 | None:intergenic | 35.0% | |
| GATATAGACCTTTCAACTCT+TGG | - | chr1.1:8361452-8361471 | MS.gene60299:intron | 35.0% | |
| GATTAGACCATATTGTCAAC+TGG | - | chr1.1:8363956-8363975 | MS.gene60299:intron | 35.0% | |
| GCAACATATAACTGGAACAA+TGG | + | chr1.1:8360945-8360964 | None:intergenic | 35.0% | |
| GGTCATCAAAGAGATAGAAA+GGG | + | chr1.1:8361931-8361950 | None:intergenic | 35.0% | |
| GTAATCCTGTTCAAGACTAA+CGG | + | chr1.1:8360812-8360831 | None:intergenic | 35.0% | |
| GTGATCATATAAGTCGAGTT+TGG | + | chr1.1:8362923-8362942 | None:intergenic | 35.0% | |
| GTGTTCTTTCAGACTATTTC+TGG | - | chr1.1:8363236-8363255 | MS.gene60299:intron | 35.0% | |
| TAAACTCGGTATCCAGATTA+AGG | - | chr1.1:8360321-8360340 | MS.gene60299:intron | 35.0% | |
| TATTAGCACACTGCATGATA+TGG | + | chr1.1:8361172-8361191 | None:intergenic | 35.0% | |
| TCAATGTGATGCCATACAAA+GGG | + | chr1.1:8362383-8362402 | None:intergenic | 35.0% | |
| TCCAATAAGCCAATCTCATT+GGG | + | chr1.1:8360666-8360685 | None:intergenic | 35.0% | |
| TCTAAGTCCTTATCTAAGCA+CGG | - | chr1.1:8361076-8361095 | MS.gene60299:intron | 35.0% | |
| TGGTCATCAAAGAGATAGAA+AGG | + | chr1.1:8361932-8361951 | None:intergenic | 35.0% | |
| TGTGTTAACAGGTATTTGCT+GGG | - | chr1.1:8364057-8364076 | MS.gene60299:CDS | 35.0% | |
| TTAGTAATAATTGGAGGTCC+TGG | - | chr1.1:8360732-8360751 | MS.gene60299:intron | 35.0% | |
| TTCAATGTGATGCCATACAA+AGG | + | chr1.1:8362384-8362403 | None:intergenic | 35.0% | |
| TTCCAATAAGCCAATCTCAT+TGG | + | chr1.1:8360667-8360686 | None:intergenic | 35.0% | |
| TTGAATGCATGTTTGATGTC+TGG | - | chr1.1:8363687-8363706 | MS.gene60299:intron | 35.0% | |
| TTGCTTCATGTGACTTGATT+TGG | - | chr1.1:8360257-8360276 | MS.gene60299:intron | 35.0% | |
| TTGTGTTAACAGGTATTTGC+TGG | - | chr1.1:8364056-8364075 | MS.gene60299:CDS | 35.0% | |
| TTTCATTTGCTCCTCTAACT+TGG | - | chr1.1:8362949-8362968 | MS.gene60299:intron | 35.0% | |
| ! | ACCTATCTGGTTTATAACAG+AGG | - | chr1.1:8361577-8361596 | MS.gene60299:intron | 35.0% |
| ! | AGATAGAGGGTATAAGAGAA+AGG | - | chr1.1:8362461-8362480 | MS.gene60299:CDS | 35.0% |
| ! | AGGTACTGTTGTTATCATCT+GGG | - | chr1.1:8359938-8359957 | MS.gene60299:CDS | 35.0% |
| ! | ATGTATCTGAGAAGTATAGG+TGG | - | chr1.1:8362184-8362203 | MS.gene60299:CDS | 35.0% |
| ! | GATTTTACATTGCACCTATC+TGG | - | chr1.1:8361564-8361583 | MS.gene60299:intron | 35.0% |
| ! | TAGGTACTGTTGTTATCATC+TGG | - | chr1.1:8359937-8359956 | MS.gene60299:CDS | 35.0% |
| ! | TCTCTTGTTGGAGATCTTTT+TGG | - | chr1.1:8362632-8362651 | MS.gene60299:CDS | 35.0% |
| ! | TTTTCTATAAAGGTCGTGTG+AGG | - | chr1.1:8360585-8360604 | MS.gene60299:CDS | 35.0% |
| !! | AAAAAGTTTTCTGGCGAAGA+AGG | - | chr1.1:8362789-8362808 | MS.gene60299:intron | 35.0% |
| !!! | TGTTTTGGCATTGTGTTAAC+AGG | - | chr1.1:8364046-8364065 | MS.gene60299:intron | 35.0% |
| AAAAATGCAGAAAGCGGCAA+TGG | - | chr1.1:8361377-8361396 | MS.gene60299:CDS | 40.0% | |
| AAATCCCACTGTCTACTAGT+GGG | - | chr1.1:8360363-8360382 | MS.gene60299:intron | 40.0% | |
| AAGAACCACTTCATCCATTC+TGG | + | chr1.1:8363197-8363216 | None:intergenic | 40.0% | |
| AAGCTGGTGTATTTGAGAGA+GGG | - | chr1.1:8360216-8360235 | MS.gene60299:intron | 40.0% | |
| AAGTGGAGAGGATGTGTATA+AGG | - | chr1.1:8360702-8360721 | MS.gene60299:intron | 40.0% | |
| AATTTATGTGTTGGGCGAGA+CGG | + | chr1.1:8360428-8360447 | None:intergenic | 40.0% | |
| ACACATAAATTGTTGGCGCT+TGG | - | chr1.1:8360437-8360456 | MS.gene60299:intron | 40.0% | |
| ACACTGTTGTCTAAGCTTGA+AGG | - | chr1.1:8361002-8361021 | MS.gene60299:intron | 40.0% | |
| ACATAAATTGTTGGCGCTTG+GGG | - | chr1.1:8360439-8360458 | MS.gene60299:intron | 40.0% | |
| ACCTAATGACCCAATGAGAT+TGG | - | chr1.1:8360654-8360673 | MS.gene60299:CDS | 40.0% | |
| AGAAAATGATTGAAACCCCC+GGG | + | chr1.1:8360536-8360555 | None:intergenic | 40.0% | |
| AGCGCCAACAATTTATGTGT+TGG | + | chr1.1:8360437-8360456 | None:intergenic | 40.0% | |
| ATGTTTGTAAACCAGCTCAG+AGG | + | chr1.1:8362035-8362054 | None:intergenic | 40.0% | |
| CACAGATATCATCCTACCAA+AGG | + | chr1.1:8360834-8360853 | None:intergenic | 40.0% | |
| CACATAAATTGTTGGCGCTT+GGG | - | chr1.1:8360438-8360457 | MS.gene60299:intron | 40.0% | |
| CCATTTGTGGTGACATATCT+CGG | - | chr1.1:8361266-8361285 | MS.gene60299:intron | 40.0% | |
| CCTCCCAATAGCATTCATTA+AGG | - | chr1.1:8361310-8361329 | MS.gene60299:intron | 40.0% | |
| CCTTAATGAATGCTATTGGG+AGG | + | chr1.1:8361313-8361332 | None:intergenic | 40.0% | |
| CGATTATAAGCAGCCATTTG+TGG | - | chr1.1:8361253-8361272 | MS.gene60299:intron | 40.0% | |
| CTATCTCTCCAAGAGTTGAA+AGG | + | chr1.1:8361463-8361482 | None:intergenic | 40.0% | |
| CTTTGGTAGGATGATATCTG+TGG | - | chr1.1:8360832-8360851 | MS.gene60299:CDS | 40.0% | |
| GATGAAGTGGTTCTTGCAAA+TGG | - | chr1.1:8363202-8363221 | MS.gene60299:intron | 40.0% | |
| GATTAAGGACCGACTAATCT+AGG | - | chr1.1:8360336-8360355 | MS.gene60299:intron | 40.0% | |
| GATTTGTCCCCTAGATTAGT+CGG | + | chr1.1:8360348-8360367 | None:intergenic | 40.0% | |
| GCGCCAACAATTTATGTGTT+GGG | + | chr1.1:8360436-8360455 | None:intergenic | 40.0% | |
| GTCTTACATATGTAGACCAG+AGG | - | chr1.1:8360979-8360998 | MS.gene60299:intron | 40.0% | |
| GTCTTGAACAGGATTACCTT+TGG | - | chr1.1:8360815-8360834 | MS.gene60299:CDS | 40.0% | |
| TCAAGACTAACGGAGCAAAA+GGG | + | chr1.1:8360802-8360821 | None:intergenic | 40.0% | |
| TCGCCCAACACATAAATTGT+TGG | - | chr1.1:8360430-8360449 | MS.gene60299:intron | 40.0% | |
| TGAAAGAAAGATCCTCCGAT+TGG | + | chr1.1:8363545-8363564 | None:intergenic | 40.0% | |
| TGAAATGGAACTAGGGAATG+TGG | - | chr1.1:8361415-8361434 | MS.gene60299:intron | 40.0% | |
| TGAACAGGATTACCTTTGGT+AGG | - | chr1.1:8360819-8360838 | MS.gene60299:CDS | 40.0% | |
| TGTATTTGAGAGAGGGATGT+AGG | - | chr1.1:8360223-8360242 | MS.gene60299:intron | 40.0% | |
| TGTTTACACTTGTAGCGCTA+TGG | - | chr1.1:8362853-8362872 | MS.gene60299:intron | 40.0% | |
| TGTTTACATTGGATCGAACC+AGG | + | chr1.1:8360753-8360772 | None:intergenic | 40.0% | |
| TGTTTGTAAACCAGCTCAGA+GGG | + | chr1.1:8362034-8362053 | None:intergenic | 40.0% | |
| TTAAGGACCGACTAATCTAG+GGG | - | chr1.1:8360338-8360357 | MS.gene60299:intron | 40.0% | |
| TTCAAGACTAACGGAGCAAA+AGG | + | chr1.1:8360803-8360822 | None:intergenic | 40.0% | |
| TTTACTTGATCTACCACCCA+GGG | - | chr1.1:8363321-8363340 | MS.gene60299:intron | 40.0% | |
| TTTGGTAAGTGTCATAGCCT+AGG | - | chr1.1:8363921-8363940 | MS.gene60299:intron | 40.0% | |
| ! | AAACACCGGTCTTCTAAAAG+TGG | - | chr1.1:8361353-8361372 | MS.gene60299:CDS | 40.0% |
| ! | AGATTAGTCGGTCCTTAATC+TGG | + | chr1.1:8360336-8360355 | None:intergenic | 40.0% |
| ! | AGCAATGAGGACTGCATTTT+TGG | + | chr1.1:8360867-8360886 | None:intergenic | 40.0% |
| ! | ATGCATTCAATAGGAAGTGC+TGG | + | chr1.1:8363677-8363696 | None:intergenic | 40.0% |
| ! | CAATGAGGACTGCATTTTTG+GGG | + | chr1.1:8360865-8360884 | None:intergenic | 40.0% |
| ! | CACTATTCCTCTTGCTATGA+TGG | - | chr1.1:8363396-8363415 | MS.gene60299:intron | 40.0% |
| ! | GCAATGAGGACTGCATTTTT+GGG | + | chr1.1:8360866-8360885 | None:intergenic | 40.0% |
| ! | GGACTCTTCACTCTTTTCAT+TGG | - | chr1.1:8361774-8361793 | MS.gene60299:intron | 40.0% |
| ! | GTAGTTTGAGATACAAGGCT+GGG | - | chr1.1:8359904-8359923 | MS.gene60299:CDS | 40.0% |
| ! | GTGAAGTACTAGACACGATT+TGG | - | chr1.1:8362258-8362277 | MS.gene60299:CDS | 40.0% |
| ! | GTTCTTGCAAATGGACTTGT+TGG | - | chr1.1:8363211-8363230 | MS.gene60299:intron | 40.0% |
| !! | AAGGCTGGGTTGTTTCTTAT+AGG | - | chr1.1:8359918-8359937 | MS.gene60299:CDS | 40.0% |
| !! | ACCCAATGAGATTGGCTTAT+TGG | - | chr1.1:8360662-8360681 | MS.gene60299:CDS | 40.0% |
| !! | TTGTTGGTTCCATCGATGAT+AGG | - | chr1.1:8363636-8363655 | MS.gene60299:intron | 40.0% |
| AAAATGATTGAAACCCCCGG+GGG | + | chr1.1:8360534-8360553 | None:intergenic | 45.0% | |
| AATCCCACTGTCTACTAGTG+GGG | - | chr1.1:8360364-8360383 | MS.gene60299:intron | 45.0% | |
| AGATTGGGCGACAAAGAGAT+TGG | - | chr1.1:8364100-8364119 | MS.gene60299:CDS | 45.0% | |
| AGTCCTTATCTAAGCACGGT+TGG | - | chr1.1:8361080-8361099 | MS.gene60299:intron | 45.0% | |
| AGTTAGGGCAAAGCTCTGTA+TGG | - | chr1.1:8360397-8360416 | MS.gene60299:intron | 45.0% | |
| ATACACATCCTCTCCACTTG+TGG | + | chr1.1:8360701-8360720 | None:intergenic | 45.0% | |
| ATACATGCTTGGATCAGCTC+AGG | - | chr1.1:8363456-8363475 | MS.gene60299:intron | 45.0% | |
| ATATCTCGGAGCTTCTCTCA+TGG | - | chr1.1:8361280-8361299 | MS.gene60299:intron | 45.0% | |
| ATGCTGAATAATGGCGACCA+TGG | + | chr1.1:8363435-8363454 | None:intergenic | 45.0% | |
| ATGGCTGACATGGTAATCCA+TGG | - | chr1.1:8363415-8363434 | MS.gene60299:intron | 45.0% | |
| ATGTCAGCCATCATAGCAAG+AGG | + | chr1.1:8363406-8363425 | None:intergenic | 45.0% | |
| CAAATCCCACTGTCTACTAG+TGG | - | chr1.1:8360362-8360381 | MS.gene60299:intron | 45.0% | |
| CAAGACTAACGGAGCAAAAG+GGG | + | chr1.1:8360801-8360820 | None:intergenic | 45.0% | |
| CATAAATTGTTGGCGCTTGG+GGG | - | chr1.1:8360440-8360459 | MS.gene60299:intron | 45.0% | |
| CATAGGACATGGCTGAAAGA+AGG | + | chr1.1:8362658-8362677 | None:intergenic | 45.0% | |
| CCGAGATATGTCACCACAAA+TGG | + | chr1.1:8361269-8361288 | None:intergenic | 45.0% | |
| CTTCTTTCAGCCATGTCCTA+TGG | - | chr1.1:8362656-8362675 | MS.gene60299:CDS | 45.0% | |
| GAAAATGATTGAAACCCCCG+GGG | + | chr1.1:8360535-8360554 | None:intergenic | 45.0% | |
| GAAGCTGGTGTATTTGAGAG+AGG | - | chr1.1:8360215-8360234 | MS.gene60299:intron | 45.0% | |
| GAATGCGAAACCACATGTGT+TGG | + | chr1.1:8363720-8363739 | None:intergenic | 45.0% | |
| GATTGGGCGACAAAGAGATT+GGG | - | chr1.1:8364101-8364120 | MS.gene60299:CDS | 45.0% | |
| GCATTAACCAGTGCCAACTT+CGG | - | chr1.1:8363041-8363060 | MS.gene60299:intron | 45.0% | |
| GCCAATCTCATTGGGTCATT+AGG | + | chr1.1:8360658-8360677 | None:intergenic | 45.0% | |
| GCTTTGCCCTAACTTTGACT+AGG | + | chr1.1:8360391-8360410 | None:intergenic | 45.0% | |
| GTTGACGTGCAAAAGCTGTT+TGG | - | chr1.1:8362819-8362838 | MS.gene60299:intron | 45.0% | |
| GTTTACTTGATCTACCACCC+AGG | - | chr1.1:8363320-8363339 | MS.gene60299:intron | 45.0% | |
| TAAACCAGCTCAGAGGGTAA+AGG | + | chr1.1:8362028-8362047 | None:intergenic | 45.0% | |
| TCAATTCCTAAGGCCGACAA+TGG | + | chr1.1:8363148-8363167 | None:intergenic | 45.0% | |
| TCTCCAACCGTGCTTAGATA+AGG | + | chr1.1:8361086-8361105 | None:intergenic | 45.0% | |
| TCTTGGAGAGATAGCACCAT+TGG | - | chr1.1:8361469-8361488 | MS.gene60299:intron | 45.0% | |
| TGGGGACCTAGTCAAAGTTA+GGG | - | chr1.1:8360382-8360401 | MS.gene60299:intron | 45.0% | |
| TTACACTTGTAGCGCTATGG+TGG | - | chr1.1:8362856-8362875 | MS.gene60299:intron | 45.0% | |
| TTGTAACAGTAGCCAATCGG+AGG | - | chr1.1:8363530-8363549 | MS.gene60299:intron | 45.0% | |
| TTTGAACCTGAGACCTAGAG+AGG | - | chr1.1:8360464-8360483 | MS.gene60299:intron | 45.0% | |
| ! | GGTAGTTTGAGATACAAGGC+TGG | - | chr1.1:8359903-8359922 | MS.gene60299:CDS | 45.0% |
| ! | TCTTGCTATGATGGCTGACA+TGG | - | chr1.1:8363405-8363424 | MS.gene60299:intron | 45.0% |
| ! | TGGCTTATTGGAAGCATGCT+TGG | - | chr1.1:8360674-8360693 | MS.gene60299:intron | 45.0% |
| ! | TTTCTGGCGAAGAAGGTGAA+CGG | - | chr1.1:8362796-8362815 | MS.gene60299:intron | 45.0% |
| !! | GAGAGGGATGTAGGTTGATA+TGG | - | chr1.1:8360232-8360251 | MS.gene60299:intron | 45.0% |
| !! | TTGCTCCGTTAGTCTTGAAC+AGG | - | chr1.1:8360804-8360823 | MS.gene60299:CDS | 45.0% |
| AAGCATGCTTGGTCCACAAG+TGG | - | chr1.1:8360685-8360704 | MS.gene60299:intron | 50.0% | |
| AATGGACAGCGCTCTCTTGT+TGG | - | chr1.1:8362620-8362639 | MS.gene60299:CDS | 50.0% | |
| AGTCTTGCCCAGAGTTGTCA+TGG | + | chr1.1:8361871-8361890 | None:intergenic | 50.0% | |
| AGTGAGTGACATGCCCAAAG+TGG | + | chr1.1:8363380-8363399 | None:intergenic | 50.0% | |
| CTCTGCCAGAATGGATGAAG+TGG | - | chr1.1:8363189-8363208 | MS.gene60299:intron | 50.0% | |
| GACAACTCTGGGCAAGACTT+GGG | - | chr1.1:8361872-8361891 | MS.gene60299:intron | 50.0% | |
| GAGTGCGGAATCGCAAACTT+AGG | + | chr1.1:8363172-8363191 | None:intergenic | 50.0% | |
| GCTTAGACAACAGTGTCCTC+TGG | + | chr1.1:8360998-8361017 | None:intergenic | 50.0% | |
| GTGGGGACCTAGTCAAAGTT+AGG | - | chr1.1:8360381-8360400 | MS.gene60299:intron | 50.0% | |
| TAACCAGTGCCAACTTCGGT+GGG | - | chr1.1:8363045-8363064 | MS.gene60299:intron | 50.0% | |
| TCATCCATTCTGGCAGAGTG+CGG | + | chr1.1:8363187-8363206 | None:intergenic | 50.0% | |
| TGACAACTCTGGGCAAGACT+TGG | - | chr1.1:8361871-8361890 | MS.gene60299:intron | 50.0% | |
| TGCTTGGATCAGCTCAGGTA+TGG | - | chr1.1:8363461-8363480 | MS.gene60299:intron | 50.0% | |
| TGGAGAGATAGCACCATTGG+TGG | - | chr1.1:8361472-8361491 | MS.gene60299:intron | 50.0% | |
| TGGCACAACACCAACACATG+TGG | - | chr1.1:8363707-8363726 | MS.gene60299:intron | 50.0% | |
| TGTGAGGTCGAAAGCTCTGT+TGG | - | chr1.1:8360601-8360620 | MS.gene60299:CDS | 50.0% | |
| TTAACCAGTGCCAACTTCGG+TGG | - | chr1.1:8363044-8363063 | MS.gene60299:intron | 50.0% | |
| TTCTGGCGAAGAAGGTGAAC+GGG | - | chr1.1:8362797-8362816 | MS.gene60299:intron | 50.0% | |
| TTGCTCAGTCTGGCCATTGT+CGG | - | chr1.1:8363132-8363151 | MS.gene60299:intron | 50.0% | |
| AACTCCCCTTGTGGCCACTT+TGG | - | chr1.1:8363363-8363382 | MS.gene60299:intron | 55.0% | |
| ACATGCCCAAAGTGGCCACA+AGG | + | chr1.1:8363372-8363391 | None:intergenic | 55.0% | |
| AGGTCCCCACTAGTAGACAG+TGG | + | chr1.1:8360371-8360390 | None:intergenic | 55.0% | |
| ATGCCCAAAGTGGCCACAAG+GGG | + | chr1.1:8363370-8363389 | None:intergenic | 55.0% | |
| CAGAGTTGTCATGGCAACCC+CGG | + | chr1.1:8361862-8361881 | None:intergenic | 55.0% | |
| CATGCCCAAAGTGGCCACAA+GGG | + | chr1.1:8363371-8363390 | None:intergenic | 55.0% | |
| CCAAACTAGCCCACCGAAGT+TGG | + | chr1.1:8363057-8363076 | None:intergenic | 55.0% | |
| CGTATGGACAACTCCCCTTG+TGG | - | chr1.1:8363354-8363373 | MS.gene60299:intron | 55.0% | |
| CTGTCTTGGTCAGCATGACC+GGG | - | chr1.1:8361841-8361860 | MS.gene60299:intron | 55.0% | |
| GATTCCGCACTCTGCCAGAA+TGG | - | chr1.1:8363180-8363199 | MS.gene60299:intron | 55.0% | |
| GCATCCTTTACCCTCTGAGC+TGG | - | chr1.1:8362021-8362040 | MS.gene60299:intron | 55.0% | |
| GCTGTCTTGGTCAGCATGAC+CGG | - | chr1.1:8361840-8361859 | MS.gene60299:intron | 55.0% | |
| GGGGTTGCCATGACAACTCT+GGG | - | chr1.1:8361861-8361880 | MS.gene60299:intron | 55.0% | |
| GGTCCCCACTAGTAGACAGT+GGG | + | chr1.1:8360370-8360389 | None:intergenic | 55.0% | |
| GTGGTGAAGACTTGGGACCT+AGG | + | chr1.1:8360498-8360517 | None:intergenic | 55.0% | |
| TACCTGGGTGACTTCAGCAG+AGG | + | chr1.1:8359967-8359986 | None:intergenic | 55.0% | |
| TGCTTGGTCCACAAGTGGAG+AGG | - | chr1.1:8360690-8360709 | MS.gene60299:intron | 55.0% | |
| TGGCCTCGTGGTGAAGACTT+GGG | + | chr1.1:8360505-8360524 | None:intergenic | 55.0% | |
| TGTCTTGGTCAGCATGACCG+GGG | - | chr1.1:8361842-8361861 | MS.gene60299:intron | 55.0% | |
| TGTGCTCCTCTCTAGGTCTC+AGG | + | chr1.1:8360473-8360492 | None:intergenic | 55.0% | |
| TTGGCCTCGTGGTGAAGACT+TGG | + | chr1.1:8360506-8360525 | None:intergenic | 55.0% | |
| ! | ACTCCCCTTGTGGCCACTTT+GGG | - | chr1.1:8363364-8363383 | MS.gene60299:intron | 55.0% |
| ! | CTAGAGAGGAGCACACTCCT+AGG | - | chr1.1:8360478-8360497 | MS.gene60299:intron | 55.0% |
| ! | CTAGGAGTGTGCTCCTCTCT+AGG | + | chr1.1:8360480-8360499 | None:intergenic | 55.0% |
| !! | CCAACTTCGGTGGGCTAGTT+TGG | - | chr1.1:8363054-8363073 | MS.gene60299:intron | 55.0% |
| CGGGGTTGCCATGACAACTC+TGG | - | chr1.1:8361860-8361879 | MS.gene60299:intron | 60.0% | |
| CTCCTCTGCTGAAGTCACCC+AGG | - | chr1.1:8359962-8359981 | MS.gene60299:intron | 60.0% | |
| GATTGAAACCCCCGGGGGTT+GGG | + | chr1.1:8360529-8360548 | None:intergenic | 60.0% | |
| GGTCCCAAGTCTTCACCACG+AGG | - | chr1.1:8360499-8360518 | MS.gene60299:intron | 60.0% | |
| GTCTGGCCATTGTCGGCCTT+AGG | - | chr1.1:8363139-8363158 | MS.gene60299:intron | 60.0% | |
| TAGCCCACCGAAGTTGGCAC+TGG | + | chr1.1:8363051-8363070 | None:intergenic | 60.0% | |
| TGATTGAAACCCCCGGGGGT+TGG | + | chr1.1:8360530-8360549 | None:intergenic | 60.0% | |
| ! | CATACGACGCAGAGTGCCCT+GGG | + | chr1.1:8363340-8363359 | None:intergenic | 60.0% |
| !! | GGAACAATGGAGCACCGCAG+TGG | + | chr1.1:8360932-8360951 | None:intergenic | 60.0% |
| ! | CCAGGGCACTCTGCGTCGTA+TGG | - | chr1.1:8363338-8363357 | MS.gene60299:intron | 65.0% |
| ! | CCATACGACGCAGAGTGCCC+TGG | + | chr1.1:8363341-8363360 | None:intergenic | 65.0% |
| ACGAGGCCAACCCAACCCCC+GGG | - | chr1.1:8360516-8360535 | MS.gene60299:intron | 70.0% | |
| CACGAGGCCAACCCAACCCC+CGG | - | chr1.1:8360515-8360534 | MS.gene60299:intron | 70.0% | |
| GAAACCCCCGGGGGTTGGGT+TGG | + | chr1.1:8360525-8360544 | None:intergenic | 70.0% | |
| ! | ACGACGCAGAGTGCCCTGGG+TGG | + | chr1.1:8363337-8363356 | None:intergenic | 70.0% |
| CGAGGCCAACCCAACCCCCG+GGG | - | chr1.1:8360517-8360536 | MS.gene60299:intron | 75.0% | |
| GAGGCCAACCCAACCCCCGG+GGG | - | chr1.1:8360518-8360537 | MS.gene60299:intron | 75.0% | |
| !! | CGGGGGTTGGGTTGGCCTCG+TGG | + | chr1.1:8360517-8360536 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 8359900 | 8364130 | 8359900 | ID=MS.gene60299 |
| chr1.1 | mRNA | 8359900 | 8364130 | 8359900 | ID=MS.gene60299.t1;Parent=MS.gene60299 |
| chr1.1 | exon | 8364047 | 8364130 | 8364047 | ID=MS.gene60299.t1.exon1;Parent=MS.gene60299.t1 |
| chr1.1 | CDS | 8364047 | 8364130 | 8364047 | ID=cds.MS.gene60299.t1;Parent=MS.gene60299.t1 |
| chr1.1 | exon | 8362432 | 8362788 | 8362432 | ID=MS.gene60299.t1.exon2;Parent=MS.gene60299.t1 |
| chr1.1 | CDS | 8362432 | 8362788 | 8362432 | ID=cds.MS.gene60299.t1;Parent=MS.gene60299.t1 |
| chr1.1 | exon | 8362108 | 8362322 | 8362108 | ID=MS.gene60299.t1.exon3;Parent=MS.gene60299.t1 |
| chr1.1 | CDS | 8362108 | 8362322 | 8362108 | ID=cds.MS.gene60299.t1;Parent=MS.gene60299.t1 |
| chr1.1 | exon | 8361341 | 8361411 | 8361341 | ID=MS.gene60299.t1.exon4;Parent=MS.gene60299.t1 |
| chr1.1 | CDS | 8361341 | 8361411 | 8361341 | ID=cds.MS.gene60299.t1;Parent=MS.gene60299.t1 |
| chr1.1 | exon | 8361148 | 8361249 | 8361148 | ID=MS.gene60299.t1.exon5;Parent=MS.gene60299.t1 |
| chr1.1 | CDS | 8361148 | 8361249 | 8361148 | ID=cds.MS.gene60299.t1;Parent=MS.gene60299.t1 |
| chr1.1 | exon | 8360773 | 8360890 | 8360773 | ID=MS.gene60299.t1.exon6;Parent=MS.gene60299.t1 |
| chr1.1 | CDS | 8360773 | 8360890 | 8360773 | ID=cds.MS.gene60299.t1;Parent=MS.gene60299.t1 |
| chr1.1 | exon | 8360553 | 8360688 | 8360553 | ID=MS.gene60299.t1.exon7;Parent=MS.gene60299.t1 |
| chr1.1 | CDS | 8360553 | 8360688 | 8360553 | ID=cds.MS.gene60299.t1;Parent=MS.gene60299.t1 |
| chr1.1 | exon | 8359900 | 8359962 | 8359900 | ID=MS.gene60299.t1.exon8;Parent=MS.gene60299.t1 |
| chr1.1 | CDS | 8359900 | 8359962 | 8359900 | ID=cds.MS.gene60299.t1;Parent=MS.gene60299.t1 |
| Gene Sequence |
| Protein sequence |
