Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60354.t1 | RHN63526.1 | 87.6 | 482 | 20 | 3 | 1 | 478 | 10 | 455 | 1.50E-236 | 828.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60354.t1 | Q6GNS3 | 44.7 | 468 | 242 | 9 | 21 | 478 | 13 | 473 | 6.1e-109 | 396.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60354.t1 | A0A396ID67 | 87.6 | 482 | 20 | 3 | 1 | 478 | 10 | 455 | 1.1e-236 | 828.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015887 | MS.gene60354 | PPI |
| MS.gene021568 | MS.gene60354 | PPI |
| MS.gene54064 | MS.gene60354 | PPI |
| MS.gene86289 | MS.gene60354 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60354.t1 | MTR_4g107030 | 85.350 | 471 | 19 | 3 | 1 | 467 | 1 | 425 | 0.0 | 816 |
| MS.gene60354.t1 | MTR_3g064880 | 72.868 | 516 | 91 | 6 | 7 | 478 | 1 | 511 | 0.0 | 738 |
| MS.gene60354.t1 | MTR_5g091890 | 54.545 | 462 | 192 | 6 | 19 | 472 | 14 | 465 | 8.96e-165 | 474 |
| MS.gene60354.t1 | MTR_5g089690 | 39.297 | 313 | 155 | 9 | 164 | 454 | 5 | 304 | 3.59e-51 | 177 |
| MS.gene60354.t1 | MTR_5g091160 | 38.462 | 312 | 158 | 7 | 164 | 454 | 5 | 303 | 5.83e-50 | 174 |
| MS.gene60354.t1 | MTR_5g090460 | 39.527 | 296 | 153 | 10 | 165 | 454 | 16 | 291 | 5.53e-47 | 166 |
| MS.gene60354.t1 | MTR_5g008620 | 38.585 | 311 | 142 | 10 | 164 | 454 | 5 | 286 | 1.98e-46 | 164 |
| MS.gene60354.t1 | MTR_5g006990 | 37.188 | 320 | 143 | 9 | 164 | 454 | 5 | 295 | 6.19e-46 | 163 |
| MS.gene60354.t1 | MTR_5g011640 | 35.913 | 323 | 151 | 10 | 164 | 451 | 5 | 306 | 1.66e-43 | 157 |
| MS.gene60354.t1 | MTR_5g011470 | 35.913 | 323 | 151 | 10 | 164 | 451 | 5 | 306 | 2.22e-43 | 157 |
| MS.gene60354.t1 | MTR_5g091490 | 38.889 | 270 | 119 | 8 | 166 | 417 | 9 | 250 | 3.18e-39 | 144 |
| MS.gene60354.t1 | MTR_5g092540 | 46.703 | 182 | 81 | 3 | 250 | 417 | 8 | 187 | 3.47e-39 | 142 |
| MS.gene60354.t1 | MTR_5g090030 | 40.678 | 236 | 120 | 5 | 216 | 451 | 20 | 235 | 2.70e-38 | 141 |
| MS.gene60354.t1 | MTR_8g442440 | 60.345 | 58 | 23 | 0 | 249 | 306 | 12 | 69 | 3.20e-16 | 74.3 |
| MS.gene60354.t1 | MTR_4g069000 | 35.542 | 166 | 80 | 5 | 312 | 454 | 31 | 192 | 9.90e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60354.t1 | AT2G03820 | 58.873 | 479 | 167 | 10 | 10 | 471 | 6 | 471 | 0.0 | 563 |
Find 104 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATCAACTCCTCCAATTC+AGG | 0.234477 | 8.2:+19208573 | None:intergenic |
| GGAACGTGATCAATTCTTAA+AGG | 0.234838 | 8.2:-19208598 | MS.gene60354:CDS |
| TACATAGCTTTGGGAAATAT+TGG | 0.252016 | 8.2:-19209110 | MS.gene60354:CDS |
| TGCTCAAGTTGCTCGAGTTT+TGG | 0.255945 | 8.2:-19208862 | MS.gene60354:CDS |
| TGGTAAATGCAGAATTTATT+TGG | 0.256762 | 8.2:-19209613 | MS.gene60354:CDS |
| CTTACCATGTCAGGTTTATC+AGG | 0.270325 | 8.2:-19209932 | None:intergenic |
| CCCAAAGCTATGTAAGCTTT+AGG | 0.296946 | 8.2:+19209119 | None:intergenic |
| TTATCATTACGACTCTTAAT+AGG | 0.312963 | 8.2:+19209245 | None:intergenic |
| TTCTTTATTAAAATCACTTC+AGG | 0.335878 | 8.2:+19208699 | None:intergenic |
| TCCTAAAGCTTACATAGCTT+TGG | 0.338275 | 8.2:-19209120 | MS.gene60354:CDS |
| GTTCAGAAGGAGGTTTATAA+TGG | 0.347373 | 8.2:-19209551 | MS.gene60354:CDS |
| ATTCTTAAAGGACCCTGAAT+TGG | 0.356998 | 8.2:-19208586 | MS.gene60354:CDS |
| AATTAAATCCTCGCGACAAA+TGG | 0.363763 | 8.2:+19209151 | None:intergenic |
| CAGACACTTCAGACACATAT+TGG | 0.363886 | 8.2:+19209817 | None:intergenic |
| CTCTTGGTTATGACCTGTAT+AGG | 0.365703 | 8.2:-19208767 | MS.gene60354:CDS |
| ACTTACTAGCAGAGAGTTAG+TGG | 0.368478 | 8.2:-19208973 | MS.gene60354:CDS |
| TTTATCTCCCTTACCATGTC+AGG | 0.377835 | 8.2:-19209941 | None:intergenic |
| TGGTCCATCTGAGATTACTA+TGG | 0.385953 | 8.2:-19208910 | MS.gene60354:CDS |
| TCCTATGGAGATTGATGATA+AGG | 0.388205 | 8.2:-19208640 | MS.gene60354:CDS |
| CCTAAAGCTTACATAGCTTT+GGG | 0.388692 | 8.2:-19209119 | MS.gene60354:CDS |
| TGAATCCCTTGATCTGTTTG+AGG | 0.388839 | 8.2:-19208544 | MS.gene60354:CDS |
| GATGTGGGAAGCCTCGTTCT+TGG | 0.390234 | 8.2:-19208671 | MS.gene60354:CDS |
| CCTTGTTGAGTACGTTCAAC+AGG | 0.393536 | 8.2:-19209507 | MS.gene60354:CDS |
| ATTAAATCCTCGCGACAAAT+GGG | 0.395990 | 8.2:+19209152 | None:intergenic |
| CCCTGAATTGGAGGAGTTGA+TGG | 0.406602 | 8.2:-19208574 | MS.gene60354:CDS |
| AGACACATATTGGTTGTGTT+TGG | 0.408070 | 8.2:+19209827 | None:intergenic |
| TTCTTGGAAATCACTTCCTA+TGG | 0.410620 | 8.2:-19208655 | MS.gene60354:CDS |
| ACTTGCAGCCACCGAGAACT+TGG | 0.412238 | 8.2:-19209721 | MS.gene60354:CDS |
| ACAACTGCAACCCACTGATC+AGG | 0.417342 | 8.2:+19209446 | None:intergenic |
| ATCTAAGAAACTGTACTTCA+AGG | 0.423477 | 8.2:+19209031 | None:intergenic |
| TCTTGGTTATGACCTGTATA+GGG | 0.432161 | 8.2:-19208766 | MS.gene60354:CDS |
| TCGGTGGCTGCAAGTAGCTT+TGG | 0.434736 | 8.2:+19209729 | None:intergenic |
| TTCACAGTTTATCAAACAAT+CGG | 0.439106 | 8.2:-19209887 | MS.gene60354:CDS |
| CTTCATCCTCAAACAGATCA+AGG | 0.439568 | 8.2:+19208538 | None:intergenic |
| GGAATATATAGTGTTGGATC+TGG | 0.443227 | 8.2:-19208952 | MS.gene60354:CDS |
| GCTAGTAAGTAAGGATTTGA+AGG | 0.443338 | 8.2:+19208986 | None:intergenic |
| TCTTAGATGCTGATCAGTAT+TGG | 0.445513 | 8.2:-19209016 | MS.gene60354:CDS |
| TAACTCTCTGCTAGTAAGTA+AGG | 0.447479 | 8.2:+19208977 | None:intergenic |
| ACATGTGTGAATCATGTTCC+AGG | 0.458655 | 8.2:-19209481 | MS.gene60354:CDS |
| AAGCCTGGTGACCATGCTCT+TGG | 0.462066 | 8.2:-19208783 | MS.gene60354:CDS |
| AGCTGTCAGAATCAAACAAA+TGG | 0.463377 | 8.2:-19209342 | MS.gene60354:CDS |
| CTTAAAGGACCCTGAATTGG+AGG | 0.464001 | 8.2:-19208583 | MS.gene60354:CDS |
| CTGCAAGTAGCTTTGGCACA+CGG | 0.464118 | 8.2:+19209736 | None:intergenic |
| TGAAGATGAGGAGGATAACA+TGG | 0.467885 | 8.2:-19208520 | MS.gene60354:CDS |
| TGTAGTCTGACCCAAGTTCT+CGG | 0.487384 | 8.2:+19209710 | None:intergenic |
| CATTACTGTTAGCCCTATAC+AGG | 0.490027 | 8.2:+19208754 | None:intergenic |
| AAACTGTACTTCAAGGTAAG+TGG | 0.497823 | 8.2:+19209038 | None:intergenic |
| GGGTTGCAGTTGTGCAACTC+AGG | 0.502047 | 8.2:-19209436 | MS.gene60354:CDS |
| CCATCAACTCCTCCAATTCA+GGG | 0.502743 | 8.2:+19208574 | None:intergenic |
| ACCTTGGTGCAAATCACAAT+AGG | 0.504166 | 8.2:+19209086 | None:intergenic |
| TAATAAAGAAGAAGAGATGT+GGG | 0.504765 | 8.2:-19208686 | MS.gene60354:CDS |
| TGCAAGTAGCTTTGGCACAC+GGG | 0.512112 | 8.2:+19209737 | None:intergenic |
| AGAATCAAACAAATGGATCA+TGG | 0.514811 | 8.2:-19209335 | MS.gene60354:CDS |
| TGAATCATGTTCCAGGGTGC+AGG | 0.515850 | 8.2:-19209474 | MS.gene60354:CDS |
| AGCAATGCTGTTAGTAACCT+TGG | 0.515955 | 8.2:+19209070 | None:intergenic |
| GAATTGGAGGAGTTGATGGC+TGG | 0.520156 | 8.2:-19208570 | MS.gene60354:CDS |
| GAGGCTGTTTCATCTAAAGT+TGG | 0.520425 | 8.2:-19208930 | MS.gene60354:CDS |
| AGTCAAAGTCAGTGTTCAGA+AGG | 0.524406 | 8.2:-19209564 | MS.gene60354:CDS |
| CAAAGTCAGTGTTCAGAAGG+AGG | 0.524866 | 8.2:-19209561 | MS.gene60354:CDS |
| TAACCAAGAGCATGGTCACC+AGG | 0.533294 | 8.2:+19208780 | None:intergenic |
| GAATGTCAATAAAGTGATGC+TGG | 0.539343 | 8.2:-19209633 | MS.gene60354:CDS |
| ATGGAGATTGATGATAAGGT+TGG | 0.544248 | 8.2:-19208636 | MS.gene60354:CDS |
| ATTAGAAACAAAGGAGCTGT+TGG | 0.544271 | 8.2:-19209687 | MS.gene60354:CDS |
| AAATGCAGAATTTATTTGGA+CGG | 0.551243 | 8.2:-19209609 | MS.gene60354:CDS |
| GCAGGCTAACCCTGATCAGT+GGG | 0.552421 | 8.2:-19209456 | MS.gene60354:CDS |
| GTTAGTGGAATATATAGTGT+TGG | 0.553313 | 8.2:-19208958 | MS.gene60354:CDS |
| CATGTCAGGTTTATCAGGCA+TGG | 0.555533 | 8.2:-19209927 | MS.gene60354:CDS |
| TAGATGCTGATCAGTATTGG+AGG | 0.561272 | 8.2:-19209013 | MS.gene60354:CDS |
| GGTTGGAGTTGATTACAACT+TGG | 0.561543 | 8.2:-19208619 | MS.gene60354:CDS |
| TCCTATTGTGATTTGCACCA+AGG | 0.561646 | 8.2:-19209087 | MS.gene60354:CDS |
| TTAATAAAGAAGAAGAGATG+TGG | 0.569687 | 8.2:-19208687 | MS.gene60354:CDS |
| ACTCAACAAGGTAAGACTGT+TGG | 0.572997 | 8.2:+19209519 | None:intergenic |
| CCTGTTGAACGTACTCAACA+AGG | 0.574739 | 8.2:+19209507 | None:intergenic |
| CGGGGCAATGCACGAGCACG+TGG | 0.577187 | 8.2:+19209756 | None:intergenic |
| CAACTGCAACCCACTGATCA+GGG | 0.578615 | 8.2:+19209447 | None:intergenic |
| TGCAGGCTAACCCTGATCAG+TGG | 0.581561 | 8.2:-19209457 | MS.gene60354:CDS |
| GGTCCATCTGAGATTACTAT+GGG | 0.584432 | 8.2:-19208909 | MS.gene60354:CDS |
| GCAGAAGTTGATATTACAGA+AGG | 0.588364 | 8.2:-19209791 | MS.gene60354:CDS |
| CCACCCATAGTAATCTCAGA+TGG | 0.590820 | 8.2:+19208906 | None:intergenic |
| TCAGGCAACATGTCTCTCAC+AGG | 0.606692 | 8.2:-19209418 | MS.gene60354:CDS |
| TTCATCCTCAAACAGATCAA+GGG | 0.607113 | 8.2:+19208539 | None:intergenic |
| TCTGTTTGAGGATGAAGATG+AGG | 0.610516 | 8.2:-19208532 | MS.gene60354:CDS |
| GTTTGAGGATGAAGATGAGG+AGG | 0.612046 | 8.2:-19208529 | MS.gene60354:CDS |
| CTTGCAGCCACCGAGAACTT+GGG | 0.612111 | 8.2:-19209720 | MS.gene60354:CDS |
| TTTCTATTAGAACTCATTTG+GGG | 0.613658 | 8.2:-19208815 | MS.gene60354:CDS |
| CAGACTACAATTAGAAACAA+AGG | 0.614245 | 8.2:-19209696 | MS.gene60354:CDS |
| GCAAGTAGCTTTGGCACACG+GGG | 0.617238 | 8.2:+19209738 | None:intergenic |
| TTAAATCCTCGCGACAAATG+GGG | 0.624671 | 8.2:+19209153 | None:intergenic |
| ACCTTATCATCAATCTCCAT+AGG | 0.628583 | 8.2:+19208639 | None:intergenic |
| GACGGAGCCCCATTCCAAGA+GGG | 0.629548 | 8.2:-19209591 | MS.gene60354:CDS |
| GAGCAGCTAATTCTGAAGCA+TGG | 0.629749 | 8.2:-19209377 | MS.gene60354:CDS |
| TATTTCTCTAAACGAAGTGA+CGG | 0.633761 | 8.2:-19209302 | MS.gene60354:CDS |
| CCATCTGAGATTACTATGGG+TGG | 0.634830 | 8.2:-19208906 | MS.gene60354:CDS |
| CATGCCTGATAAACCTGACA+TGG | 0.635117 | 8.2:+19209928 | None:intergenic |
| ACAGGTCATAACCAAGAGCA+TGG | 0.640269 | 8.2:+19208772 | None:intergenic |
| AATCAGCCCCATTTGTCGCG+AGG | 0.643382 | 8.2:-19209159 | MS.gene60354:CDS |
| ATATATAGTGTTGGATCTGG+AGG | 0.644394 | 8.2:-19208949 | MS.gene60354:CDS |
| AGATGCTGATCAGTATTGGA+GGG | 0.645940 | 8.2:-19209012 | MS.gene60354:CDS |
| ATCAGGGTTAGCCTGCACCC+TGG | 0.646953 | 8.2:+19209463 | None:intergenic |
| GGAAGTGATTTCCAAGAACG+AGG | 0.668709 | 8.2:+19208660 | None:intergenic |
| GCTGAATATGACAAGTACAA+AGG | 0.669807 | 8.2:-19208729 | MS.gene60354:CDS |
| GGACGGAGCCCCATTCCAAG+AGG | 0.670484 | 8.2:-19209592 | MS.gene60354:CDS |
| CATGTGTGAATCATGTTCCA+GGG | 0.675490 | 8.2:-19209480 | MS.gene60354:CDS |
| AGTCTGACCCAAGTTCTCGG+TGG | 0.743468 | 8.2:+19209713 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTTATTAAAATCACTTC+AGG | + | chr8.2:19209742-19209761 | None:intergenic | 20.0% |
| !!! | AACAACTTTTTGGAATTTAT+TGG | - | chr8.2:19209160-19209179 | MS.gene60354:CDS | 20.0% |
| !!! | TTTTCTATTAGAACTCATTT+GGG | - | chr8.2:19209622-19209641 | MS.gene60354:CDS | 20.0% |
| ! | AAATGCAGAATTTATTTGGA+CGG | - | chr8.2:19208829-19208848 | MS.gene60354:CDS | 25.0% |
| ! | TAATAAAGAAGAAGAGATGT+GGG | - | chr8.2:19209752-19209771 | MS.gene60354:CDS | 25.0% |
| ! | TGGTAAATGCAGAATTTATT+TGG | - | chr8.2:19208825-19208844 | MS.gene60354:CDS | 25.0% |
| ! | TTAATAAAGAAGAAGAGATG+TGG | - | chr8.2:19209751-19209770 | MS.gene60354:CDS | 25.0% |
| ! | TTATCATTACGACTCTTAAT+AGG | + | chr8.2:19209196-19209215 | None:intergenic | 25.0% |
| ! | TTCACAGTTTATCAAACAAT+CGG | - | chr8.2:19208551-19208570 | MS.gene60354:CDS | 25.0% |
| ! | TTTCTATTAGAACTCATTTG+GGG | - | chr8.2:19209623-19209642 | MS.gene60354:CDS | 25.0% |
| !! | CTTTTCTATTAGAACTCATT+TGG | - | chr8.2:19209621-19209640 | MS.gene60354:CDS | 25.0% |
| AGAATCAAACAAATGGATCA+TGG | - | chr8.2:19209103-19209122 | MS.gene60354:CDS | 30.0% | |
| ATCTAAGAAACTGTACTTCA+AGG | + | chr8.2:19209410-19209429 | None:intergenic | 30.0% | |
| CAGACTACAATTAGAAACAA+AGG | - | chr8.2:19208742-19208761 | MS.gene60354:CDS | 30.0% | |
| GTTAGTGGAATATATAGTGT+TGG | - | chr8.2:19209480-19209499 | MS.gene60354:CDS | 30.0% | |
| TATTTCTCTAAACGAAGTGA+CGG | - | chr8.2:19209136-19209155 | MS.gene60354:CDS | 30.0% | |
| !! | TACATAGCTTTGGGAAATAT+TGG | - | chr8.2:19209328-19209347 | MS.gene60354:CDS | 30.0% |
| AAACTGTACTTCAAGGTAAG+TGG | + | chr8.2:19209403-19209422 | None:intergenic | 35.0% | |
| AATTAAATCCTCGCGACAAA+TGG | + | chr8.2:19209290-19209309 | None:intergenic | 35.0% | |
| ACCTTATCATCAATCTCCAT+AGG | + | chr8.2:19209802-19209821 | None:intergenic | 35.0% | |
| AGCTGTCAGAATCAAACAAA+TGG | - | chr8.2:19209096-19209115 | MS.gene60354:CDS | 35.0% | |
| ATTAAATCCTCGCGACAAAT+GGG | + | chr8.2:19209289-19209308 | None:intergenic | 35.0% | |
| ATTAGAAACAAAGGAGCTGT+TGG | - | chr8.2:19208751-19208770 | MS.gene60354:CDS | 35.0% | |
| ATTCTTAAAGGACCCTGAAT+TGG | - | chr8.2:19209852-19209871 | MS.gene60354:CDS | 35.0% | |
| CCTAAAGCTTACATAGCTTT+GGG | - | chr8.2:19209319-19209338 | MS.gene60354:CDS | 35.0% | |
| GAATGTCAATAAAGTGATGC+TGG | - | chr8.2:19208805-19208824 | MS.gene60354:CDS | 35.0% | |
| GCTAGTAAGTAAGGATTTGA+AGG | + | chr8.2:19209455-19209474 | None:intergenic | 35.0% | |
| GCTGAATATGACAAGTACAA+AGG | - | chr8.2:19209709-19209728 | MS.gene60354:CDS | 35.0% | |
| GGAACGTGATCAATTCTTAA+AGG | - | chr8.2:19209840-19209859 | MS.gene60354:CDS | 35.0% | |
| GTTCAGAAGGAGGTTTATAA+TGG | - | chr8.2:19208887-19208906 | MS.gene60354:CDS | 35.0% | |
| TAACTCTCTGCTAGTAAGTA+AGG | + | chr8.2:19209464-19209483 | None:intergenic | 35.0% | |
| TCCTAAAGCTTACATAGCTT+TGG | - | chr8.2:19209318-19209337 | MS.gene60354:CDS | 35.0% | |
| TCTTAGATGCTGATCAGTAT+TGG | - | chr8.2:19209422-19209441 | MS.gene60354:CDS | 35.0% | |
| TCTTGGTTATGACCTGTATA+GGG | - | chr8.2:19209672-19209691 | MS.gene60354:CDS | 35.0% | |
| TTCATCCTCAAACAGATCAA+GGG | + | chr8.2:19209902-19209921 | None:intergenic | 35.0% | |
| TTCTTGGAAATCACTTCCTA+TGG | - | chr8.2:19209783-19209802 | MS.gene60354:CDS | 35.0% | |
| ! | AAGTGACGGTAACAACTTTT+TGG | - | chr8.2:19209150-19209169 | MS.gene60354:CDS | 35.0% |
| ! | AATGTTTTGTGCTGCAAATG+TGG | - | chr8.2:19208575-19208594 | MS.gene60354:CDS | 35.0% |
| ! | AGACACATATTGGTTGTGTT+TGG | + | chr8.2:19208614-19208633 | None:intergenic | 35.0% |
| ! | ATATATAGTGTTGGATCTGG+AGG | - | chr8.2:19209489-19209508 | MS.gene60354:CDS | 35.0% |
| ! | ATGGAGATTGATGATAAGGT+TGG | - | chr8.2:19209802-19209821 | MS.gene60354:CDS | 35.0% |
| ! | ATGTTTTGTGCTGCAAATGT+GGG | - | chr8.2:19208576-19208595 | MS.gene60354:CDS | 35.0% |
| ! | CAGGCGTACTTTCTTTTATT+TGG | - | chr8.2:19209039-19209058 | MS.gene60354:CDS | 35.0% |
| ! | GGAATATATAGTGTTGGATC+TGG | - | chr8.2:19209486-19209505 | MS.gene60354:CDS | 35.0% |
| ! | TCCTATGGAGATTGATGATA+AGG | - | chr8.2:19209798-19209817 | MS.gene60354:CDS | 35.0% |
| !! | GCAGAAGTTGATATTACAGA+AGG | - | chr8.2:19208647-19208666 | MS.gene60354:CDS | 35.0% |
| ACATGTGTGAATCATGTTCC+AGG | - | chr8.2:19208957-19208976 | MS.gene60354:CDS | 40.0% | |
| ACTCAACAAGGTAAGACTGT+TGG | + | chr8.2:19208922-19208941 | None:intergenic | 40.0% | |
| ACTTACTAGCAGAGAGTTAG+TGG | - | chr8.2:19209465-19209484 | MS.gene60354:CDS | 40.0% | |
| AGCAATGCTGTTAGTAACCT+TGG | + | chr8.2:19209371-19209390 | None:intergenic | 40.0% | |
| AGTCAAAGTCAGTGTTCAGA+AGG | - | chr8.2:19208874-19208893 | MS.gene60354:CDS | 40.0% | |
| CAGACACTTCAGACACATAT+TGG | + | chr8.2:19208624-19208643 | None:intergenic | 40.0% | |
| CATGTGTGAATCATGTTCCA+GGG | - | chr8.2:19208958-19208977 | MS.gene60354:CDS | 40.0% | |
| CATTACTGTTAGCCCTATAC+AGG | + | chr8.2:19209687-19209706 | None:intergenic | 40.0% | |
| CCCAAAGCTATGTAAGCTTT+AGG | + | chr8.2:19209322-19209341 | None:intergenic | 40.0% | |
| CTCTTGGTTATGACCTGTAT+AGG | - | chr8.2:19209671-19209690 | MS.gene60354:CDS | 40.0% | |
| CTTCATCCTCAAACAGATCA+AGG | + | chr8.2:19209903-19209922 | None:intergenic | 40.0% | |
| TCTGTTTGAGGATGAAGATG+AGG | - | chr8.2:19209906-19209925 | MS.gene60354:CDS | 40.0% | |
| TGAAGATGAGGAGGATAACA+TGG | - | chr8.2:19209918-19209937 | MS.gene60354:CDS | 40.0% | |
| TGAATCCCTTGATCTGTTTG+AGG | - | chr8.2:19209894-19209913 | MS.gene60354:CDS | 40.0% | |
| TTAAATCCTCGCGACAAATG+GGG | + | chr8.2:19209288-19209307 | None:intergenic | 40.0% | |
| ! | ACCTTGGTGCAAATCACAAT+AGG | + | chr8.2:19209355-19209374 | None:intergenic | 40.0% |
| ! | ACTTTTACCCTCTTGGAATG+GGG | + | chr8.2:19208857-19208876 | None:intergenic | 40.0% |
| ! | AGATGCTGATCAGTATTGGA+GGG | - | chr8.2:19209426-19209445 | MS.gene60354:CDS | 40.0% |
| ! | GACTTTTACCCTCTTGGAAT+GGG | + | chr8.2:19208858-19208877 | None:intergenic | 40.0% |
| ! | GAGGCTGTTTCATCTAAAGT+TGG | - | chr8.2:19209508-19209527 | MS.gene60354:CDS | 40.0% |
| ! | GGTCCATCTGAGATTACTAT+GGG | - | chr8.2:19209529-19209548 | MS.gene60354:CDS | 40.0% |
| ! | GGTTGGAGTTGATTACAACT+TGG | - | chr8.2:19209819-19209838 | MS.gene60354:CDS | 40.0% |
| ! | TAGATGCTGATCAGTATTGG+AGG | - | chr8.2:19209425-19209444 | MS.gene60354:CDS | 40.0% |
| ! | TCCTATTGTGATTTGCACCA+AGG | - | chr8.2:19209351-19209370 | MS.gene60354:CDS | 40.0% |
| ! | TGACTTTTACCCTCTTGGAA+TGG | + | chr8.2:19208859-19208878 | None:intergenic | 40.0% |
| ! | TGGTCCATCTGAGATTACTA+TGG | - | chr8.2:19209528-19209547 | MS.gene60354:CDS | 40.0% |
| !! | GACTTTGACTTTTACCCTCT+TGG | + | chr8.2:19208864-19208883 | None:intergenic | 40.0% |
| !!! | GTTGCTCGAGTTTTGGATTT+TGG | - | chr8.2:19209583-19209602 | MS.gene60354:CDS | 40.0% |
| ACAGGTCATAACCAAGAGCA+TGG | + | chr8.2:19209669-19209688 | None:intergenic | 45.0% | |
| CAAAGTCAGTGTTCAGAAGG+AGG | - | chr8.2:19208877-19208896 | MS.gene60354:CDS | 45.0% | |
| CCACCCATAGTAATCTCAGA+TGG | + | chr8.2:19209535-19209554 | None:intergenic | 45.0% | |
| CCATCAACTCCTCCAATTCA+GGG | + | chr8.2:19209867-19209886 | None:intergenic | 45.0% | |
| CCTGTTGAACGTACTCAACA+AGG | + | chr8.2:19208934-19208953 | None:intergenic | 45.0% | |
| CCTTGTTGAGTACGTTCAAC+AGG | - | chr8.2:19208931-19208950 | MS.gene60354:CDS | 45.0% | |
| CTTAAAGGACCCTGAATTGG+AGG | - | chr8.2:19209855-19209874 | MS.gene60354:CDS | 45.0% | |
| GGAAGTGATTTCCAAGAACG+AGG | + | chr8.2:19209781-19209800 | None:intergenic | 45.0% | |
| GTTTGAGGATGAAGATGAGG+AGG | - | chr8.2:19209909-19209928 | MS.gene60354:CDS | 45.0% | |
| TGTAGTCTGACCCAAGTTCT+CGG | + | chr8.2:19208731-19208750 | None:intergenic | 45.0% | |
| ! | CCATCTGAGATTACTATGGG+TGG | - | chr8.2:19209532-19209551 | MS.gene60354:CDS | 45.0% |
| !! | GAGCAGCTAATTCTGAAGCA+TGG | - | chr8.2:19209061-19209080 | MS.gene60354:CDS | 45.0% |
| !! | TGCTCAAGTTGCTCGAGTTT+TGG | - | chr8.2:19209576-19209595 | MS.gene60354:CDS | 45.0% |
| !!! | TTGGGGCATCTTTTAAAGCC+TGG | - | chr8.2:19209640-19209659 | MS.gene60354:CDS | 45.0% |
| ACAACTGCAACCCACTGATC+AGG | + | chr8.2:19208995-19209014 | None:intergenic | 50.0% | |
| CAACTGCAACCCACTGATCA+GGG | + | chr8.2:19208994-19209013 | None:intergenic | 50.0% | |
| CCCTGAATTGGAGGAGTTGA+TGG | - | chr8.2:19209864-19209883 | MS.gene60354:CDS | 50.0% | |
| GCCATCAACTCCTCCAATTC+AGG | + | chr8.2:19209868-19209887 | None:intergenic | 50.0% | |
| TCAGGCAACATGTCTCTCAC+AGG | - | chr8.2:19209020-19209039 | MS.gene60354:CDS | 50.0% | |
| TGAATCATGTTCCAGGGTGC+AGG | - | chr8.2:19208964-19208983 | MS.gene60354:CDS | 50.0% | |
| ! | TAACCAAGAGCATGGTCACC+AGG | + | chr8.2:19209661-19209680 | None:intergenic | 50.0% |
| !! | CTGCAAGTAGCTTTGGCACA+CGG | + | chr8.2:19208705-19208724 | None:intergenic | 50.0% |
| !! | GAATTGGAGGAGTTGATGGC+TGG | - | chr8.2:19209868-19209887 | MS.gene60354:CDS | 50.0% |
| !! | TGCAAGTAGCTTTGGCACAC+GGG | + | chr8.2:19208704-19208723 | None:intergenic | 50.0% |
| AAGCCTGGTGACCATGCTCT+TGG | - | chr8.2:19209655-19209674 | MS.gene60354:CDS | 55.0% | |
| AATCAGCCCCATTTGTCGCG+AGG | - | chr8.2:19209279-19209298 | MS.gene60354:CDS | 55.0% | |
| ACTTGCAGCCACCGAGAACT+TGG | - | chr8.2:19208717-19208736 | MS.gene60354:CDS | 55.0% | |
| AGTCTGACCCAAGTTCTCGG+TGG | + | chr8.2:19208728-19208747 | None:intergenic | 55.0% | |
| CTTGCAGCCACCGAGAACTT+GGG | - | chr8.2:19208718-19208737 | MS.gene60354:CDS | 55.0% | |
| GATGTGGGAAGCCTCGTTCT+TGG | - | chr8.2:19209767-19209786 | MS.gene60354:CDS | 55.0% | |
| GCAGGCTAACCCTGATCAGT+GGG | - | chr8.2:19208982-19209001 | MS.gene60354:CDS | 55.0% | |
| GGGTTGCAGTTGTGCAACTC+AGG | - | chr8.2:19209002-19209021 | MS.gene60354:CDS | 55.0% | |
| TCGGTGGCTGCAAGTAGCTT+TGG | + | chr8.2:19208712-19208731 | None:intergenic | 55.0% | |
| TGCAGGCTAACCCTGATCAG+TGG | - | chr8.2:19208981-19209000 | MS.gene60354:CDS | 55.0% | |
| !! | GCAAGTAGCTTTGGCACACG+GGG | + | chr8.2:19208703-19208722 | None:intergenic | 55.0% |
| GACGGAGCCCCATTCCAAGA+GGG | - | chr8.2:19208847-19208866 | MS.gene60354:CDS | 60.0% | |
| !! | ATCAGGGTTAGCCTGCACCC+TGG | + | chr8.2:19208978-19208997 | None:intergenic | 60.0% |
| GGACGGAGCCCCATTCCAAG+AGG | - | chr8.2:19208846-19208865 | MS.gene60354:CDS | 65.0% | |
| CGGGGCAATGCACGAGCACG+TGG | + | chr8.2:19208685-19208704 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 19208512 | 19209948 | 19208512 | ID=MS.gene60354 |
| chr8.2 | mRNA | 19208512 | 19209948 | 19208512 | ID=MS.gene60354.t1;Parent=MS.gene60354 |
| chr8.2 | exon | 19208512 | 19209948 | 19208512 | ID=MS.gene60354.t1.exon1;Parent=MS.gene60354.t1 |
| chr8.2 | CDS | 19208512 | 19209948 | 19208512 | ID=cds.MS.gene60354.t1;Parent=MS.gene60354.t1 |
| Gene Sequence |
| Protein sequence |
