Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60546.t1 | XP_003591748.3 | 99.1 | 843 | 7 | 1 | 1 | 842 | 1 | 843 | 0.00E+00 | 1678.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60546.t1 | F4J3T8 | 66.4 | 851 | 266 | 7 | 1 | 842 | 1 | 840 | 0.0e+00 | 1112.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60546.t1 | A0A396JSR1 | 99.1 | 843 | 7 | 1 | 1 | 842 | 1 | 843 | 0.0e+00 | 1678.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene60546 | MS.gene91547 | PPI |
| MS.gene60546 | MS.gene73119 | PPI |
| MS.gene064542 | MS.gene60546 | PPI |
| MS.gene44056 | MS.gene60546 | PPI |
| MS.gene60546 | MS.gene52620 | PPI |
| MS.gene035805 | MS.gene60546 | PPI |
| MS.gene005189 | MS.gene60546 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60546.t1 | MTR_1g492590 | 99.254 | 536 | 4 | 0 | 307 | 842 | 7 | 542 | 0.0 | 1111 |
| MS.gene60546.t1 | MTR_1g092570 | 98.387 | 310 | 4 | 1 | 1 | 309 | 1 | 310 | 0.0 | 625 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60546.t1 | AT3G10550 | 66.510 | 851 | 265 | 7 | 1 | 842 | 1 | 840 | 0.0 | 1140 |
| MS.gene60546.t1 | AT5G04540 | 63.822 | 832 | 282 | 5 | 13 | 839 | 13 | 830 | 0.0 | 1045 |
Find 200 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCCAATGGTGCGATTAT+TGG | 0.179147 | 1.2:+68767125 | MS.gene60546:CDS |
| TCGGACATTCAGAGGGTTTC+AGG | 0.180121 | 1.2:+68770737 | MS.gene60546:CDS |
| TCCCCACTATGTGCTTCTTC+TGG | 0.182525 | 1.2:-68773301 | None:intergenic |
| TTGGAAACTTCTTCTTTAAT+AGG | 0.208642 | 1.2:+68772220 | MS.gene60546:CDS |
| TGAAAAGGGAACCTCAATTT+TGG | 0.235304 | 1.2:-68761505 | None:intergenic |
| GTACTTCAGTGGATCATAAA+AGG | 0.243637 | 1.2:-68773203 | None:intergenic |
| GATATGAGAATTATAGTCTT+TGG | 0.249660 | 1.2:+68766419 | MS.gene60546:CDS |
| GTACAAAGCCCACAATATTA+TGG | 0.253124 | 1.2:+68767058 | MS.gene60546:CDS |
| ATGAATTACCTAATGCTCTT+TGG | 0.263678 | 1.2:-68767303 | None:intergenic |
| CTTCTGTTCTTGTTCATTGC+AGG | 0.263762 | 1.2:+68770548 | MS.gene60546:CDS |
| AAGCCCAACGAAGGTGAAAT+TGG | 0.268121 | 1.2:-68773276 | None:intergenic |
| CCTCTGAATGTCCGATAATA+TGG | 0.271777 | 1.2:-68770729 | None:intergenic |
| GATCTTTATGCTTATTCGTC+TGG | 0.282063 | 1.2:+68767081 | MS.gene60546:CDS |
| GTCGGGGCTAACGCTGCTGC+TGG | 0.282113 | 1.2:-68773244 | None:intergenic |
| GCCGTCTGCCTGTAATTTCT+TGG | 0.302001 | 1.2:+68767467 | MS.gene60546:CDS |
| TTTCATTATTAAGGCTTTCC+TGG | 0.313939 | 1.2:+68772164 | MS.gene60546:intron |
| CAGCGTTAGCCCCGACTATA+TGG | 0.337540 | 1.2:+68773251 | MS.gene60546:CDS |
| AGAGACATGGTGGGTCGATA+TGG | 0.337896 | 1.2:+68770398 | MS.gene60546:intron |
| ACTCTGGCACATTGTATAAC+TGG | 0.340220 | 1.2:-68767259 | None:intergenic |
| TGGATGTTTGTGGGCATACT+TGG | 0.348237 | 1.2:+68773135 | MS.gene60546:CDS |
| TGTTGCTTGATCCATATTAT+CGG | 0.355341 | 1.2:+68770718 | MS.gene60546:CDS |
| TGGTTGTTCCAAAGAGCATT+AGG | 0.357442 | 1.2:+68767295 | MS.gene60546:CDS |
| TCGGGGCTAACGCTGCTGCT+GGG | 0.359394 | 1.2:-68773243 | None:intergenic |
| AAGCGTGCAATTCAGTCAAT+TGG | 0.363650 | 1.2:+68773742 | MS.gene60546:CDS |
| CCCCACTATGTGCTTCTTCT+GGG | 0.364165 | 1.2:-68773300 | None:intergenic |
| GGAGAGACAAAACGCGAAAT+TGG | 0.366962 | 1.2:-68761598 | None:intergenic |
| TGCATGCTTTCTTCTCGCTT+TGG | 0.368459 | 1.2:+68772201 | MS.gene60546:CDS |
| ATTTAGGAACTCAATTTACT+TGG | 0.383255 | 1.2:-68774106 | None:intergenic |
| CTGACTCCTCCACCGGTAGC+TGG | 0.384134 | 1.2:+68761466 | MS.gene60546:CDS |
| AGCCCAACGAAGGTGAAATT+GGG | 0.384756 | 1.2:-68773275 | None:intergenic |
| GATGATGGAAACGATGTTAT+TGG | 0.384760 | 1.2:+68773928 | MS.gene60546:CDS |
| TCACCAATGCGCCAGCCATC+AGG | 0.388168 | 1.2:+68771053 | MS.gene60546:CDS |
| TGTGGGCATACTTGGCTGAT+AGG | 0.391042 | 1.2:+68773143 | MS.gene60546:CDS |
| CGGGGCTAACGCTGCTGCTG+GGG | 0.391769 | 1.2:-68773242 | None:intergenic |
| CATGAGTGTCTATGAATTCT+CGG | 0.393322 | 1.2:-68769852 | None:intergenic |
| TGCTGTGATTAACGACAAAA+AGG | 0.394698 | 1.2:+68773873 | MS.gene60546:CDS |
| ACGTGTCTTTCGAGTTATCT+AGG | 0.396410 | 1.2:+68771006 | MS.gene60546:CDS |
| CTCCATCTTTCGTACGAAAC+GGG | 0.397679 | 1.2:-68773972 | None:intergenic |
| CAACTAGGTAGCCAGTTTGT+TGG | 0.399476 | 1.2:+68774024 | MS.gene60546:CDS |
| GGCTGGCGCATTGGTGATGA+TGG | 0.401459 | 1.2:-68771047 | None:intergenic |
| ATCTTTATGCTTATTCGTCT+GGG | 0.406653 | 1.2:+68767082 | MS.gene60546:CDS |
| AAGTTTGGATGTGCTCCCGC+TGG | 0.409201 | 1.2:-68773820 | None:intergenic |
| GGCCCCAATTTCACCTTCGT+TGG | 0.409598 | 1.2:+68773272 | MS.gene60546:CDS |
| CTAGAGGAACAATACAAGTT+TGG | 0.409967 | 1.2:-68773835 | None:intergenic |
| GAGACATGGTGGGTCGATAT+GGG | 0.413049 | 1.2:+68770399 | MS.gene60546:intron |
| GAAATTGGGGCCATATAGTC+GGG | 0.423097 | 1.2:-68773261 | None:intergenic |
| AATTAGCAAGTGAAACTAAC+TGG | 0.423507 | 1.2:-68770695 | None:intergenic |
| GCGGTAATGTCCCTGATGGC+TGG | 0.423930 | 1.2:-68771064 | None:intergenic |
| CCATCTCATGCACATAGTTC+AGG | 0.427292 | 1.2:+68771092 | MS.gene60546:CDS |
| TGCCCGTTTCGTACGAAAGA+TGG | 0.429206 | 1.2:+68773970 | MS.gene60546:CDS |
| CTGCTTCAGTATCAACCCTT+GGG | 0.431439 | 1.2:+68770446 | MS.gene60546:CDS |
| TTGAAAGTTGTGGATGTTTG+TGG | 0.432364 | 1.2:+68773125 | MS.gene60546:CDS |
| CGTTCTTCCCAACCTTTAGT+TGG | 0.432900 | 1.2:+68767657 | MS.gene60546:CDS |
| AAACTTGTGGCCGCACTTTG+TGG | 0.438003 | 1.2:+68768131 | MS.gene60546:CDS |
| GTGGGAACACCGTCTATCTC+TGG | 0.440063 | 1.2:+68770975 | MS.gene60546:CDS |
| CCAGAGTTATCCATTTGCTT+TGG | 0.442979 | 1.2:+68767275 | MS.gene60546:CDS |
| GCCCCAATTTCACCTTCGTT+GGG | 0.446668 | 1.2:+68773273 | MS.gene60546:CDS |
| TACAAAGCCCACAATATTAT+GGG | 0.447087 | 1.2:+68767059 | MS.gene60546:CDS |
| AGCTTCTCATCATGCTTCAA+TGG | 0.447240 | 1.2:+68767173 | MS.gene60546:CDS |
| TCGCTTTCAAACCAACAAAC+TGG | 0.447453 | 1.2:-68774035 | None:intergenic |
| TTCTCCACAAGTCATTTGAC+AGG | 0.447739 | 1.2:-68767221 | None:intergenic |
| TTATCTAGGCAGTCTTCAAC+TGG | 0.448887 | 1.2:+68771020 | MS.gene60546:CDS |
| AGTTGAGCACAACCACCATT+TGG | 0.453492 | 1.2:-68774006 | None:intergenic |
| CAAAGACTGCTGCAGGTGAT+TGG | 0.455555 | 1.2:+68766024 | MS.gene60546:CDS |
| TGTTCTTTGGTAGTGATGGA+TGG | 0.455718 | 1.2:+68770661 | MS.gene60546:intron |
| TTGCACGGAATTTGCAAGCC+TGG | 0.457643 | 1.2:-68767441 | None:intergenic |
| GGATGACACCAAGAAATTAC+AGG | 0.458798 | 1.2:-68767475 | None:intergenic |
| ACTAGAAAAGTTATTGCCCT+TGG | 0.465404 | 1.2:+68765293 | MS.gene60546:CDS |
| TGGAGAGGTGTTCTTAAAAG+TGG | 0.466314 | 1.2:-68767109 | None:intergenic |
| TGTCTTGTTAAACTTCTCAA+TGG | 0.471583 | 1.2:-68765333 | None:intergenic |
| TGCTCGTGTTGCTATGGAAA+AGG | 0.473459 | 1.2:+68770525 | MS.gene60546:CDS |
| TGAAAGTTGTGGATGTTTGT+GGG | 0.475142 | 1.2:+68773126 | MS.gene60546:CDS |
| GAGGATAACCAAAGAAAATA+CGG | 0.475246 | 1.2:+68773714 | MS.gene60546:CDS |
| GTTGGTGTGGCACGGTGTCT+CGG | 0.476756 | 1.2:-68761423 | None:intergenic |
| GGCATCCCAGCTACCGGTGG+AGG | 0.478455 | 1.2:-68761472 | None:intergenic |
| AACTGTCATCAATTGAAAGT+TGG | 0.478726 | 1.2:-68774074 | None:intergenic |
| CAAACTTGTATTGTTCCTCT+AGG | 0.478848 | 1.2:+68773836 | MS.gene60546:CDS |
| CATGAGACCAACTAAAGGTT+GGG | 0.480942 | 1.2:-68767664 | None:intergenic |
| GATTGCTGCTCGTGTTGCTA+TGG | 0.482381 | 1.2:+68770519 | MS.gene60546:CDS |
| GGCATACTTGGCTGATAGGC+GGG | 0.484201 | 1.2:+68773147 | MS.gene60546:CDS |
| GTAATTTCTTGGTGTCATCC+TGG | 0.484344 | 1.2:+68767478 | MS.gene60546:CDS |
| TTTGGAACAACCAAAGCAAA+TGG | 0.486763 | 1.2:-68767285 | None:intergenic |
| ATGGGTTCTGTTTAGAGACA+TGG | 0.490337 | 1.2:+68770385 | MS.gene60546:intron |
| CCTTGAATGGACCAAAATTG+AGG | 0.495563 | 1.2:+68761494 | MS.gene60546:CDS |
| GTAGCTGGGATGCCCTTGAA+TGG | 0.505594 | 1.2:+68761481 | MS.gene60546:CDS |
| GTCCCTGATGGCTGGCGCAT+TGG | 0.505641 | 1.2:-68771056 | None:intergenic |
| TGACTCCTCCACCGGTAGCT+GGG | 0.505756 | 1.2:+68761467 | MS.gene60546:CDS |
| GGGGCTAACGCTGCTGCTGG+GGG | 0.506577 | 1.2:-68773241 | None:intergenic |
| TCTGCTTCAGTATCAACCCT+TGG | 0.507545 | 1.2:+68770445 | MS.gene60546:CDS |
| GTTCTTTGGTAGTGATGGAT+GGG | 0.509830 | 1.2:+68770662 | MS.gene60546:intron |
| GCTAATGGAGCCATGGGAGG+TGG | 0.510157 | 1.2:+68769642 | MS.gene60546:CDS |
| TGCAATGTGTTTGAAAGTTG+TGG | 0.511797 | 1.2:+68773115 | MS.gene60546:CDS |
| CCTCCATCTTTCGTACGAAA+CGG | 0.512251 | 1.2:-68773973 | None:intergenic |
| GGCTGCAGGTGGCCAAATGG+TGG | 0.513018 | 1.2:+68773994 | MS.gene60546:CDS |
| TACTTCAGTGGATCATAAAA+GGG | 0.515443 | 1.2:-68773202 | None:intergenic |
| TCATCCAATAATCGCACCAT+TGG | 0.515465 | 1.2:-68767129 | None:intergenic |
| AGCGTGCAATTCAGTCAATT+GGG | 0.518763 | 1.2:+68773743 | MS.gene60546:CDS |
| TGCATTAGCTAATGGAGCCA+TGG | 0.520047 | 1.2:+68769635 | MS.gene60546:CDS |
| TTTAGGAACTCAATTTACTT+GGG | 0.520091 | 1.2:-68774105 | None:intergenic |
| TGAAATTGGGGCCATATAGT+CGG | 0.520224 | 1.2:-68773262 | None:intergenic |
| GGAGGCTGCAGGTGGCCAAA+TGG | 0.523171 | 1.2:+68773991 | MS.gene60546:CDS |
| GCAGAAAACTCAAACGCAAA+AGG | 0.523563 | 1.2:-68772064 | None:intergenic |
| GTACGAAAGATGGAGGCTGC+AGG | 0.523660 | 1.2:+68773980 | MS.gene60546:CDS |
| CCATATTATCGGACATTCAG+AGG | 0.523878 | 1.2:+68770729 | MS.gene60546:CDS |
| TCATGAGACCAACTAAAGGT+TGG | 0.524291 | 1.2:-68767665 | None:intergenic |
| TGCTAGTGGTATTGTTCCAA+GGG | 0.525165 | 1.2:-68765309 | None:intergenic |
| TAAAGATCCCATAATATTGT+GGG | 0.526056 | 1.2:-68767066 | None:intergenic |
| ACCAACACAAAGACTGCTGC+AGG | 0.527140 | 1.2:+68766017 | MS.gene60546:CDS |
| TTCAAGGGCATCCCAGCTAC+CGG | 0.528328 | 1.2:-68761478 | None:intergenic |
| TTGCTAGTGGTATTGTTCCA+AGG | 0.536488 | 1.2:-68765310 | None:intergenic |
| TCACCCTGTCAAATGACTTG+TGG | 0.539321 | 1.2:+68767217 | MS.gene60546:CDS |
| CACCAATGCGCCAGCCATCA+GGG | 0.539335 | 1.2:+68771054 | MS.gene60546:CDS |
| CAACCCTTGGGGACAGTGGA+TGG | 0.540084 | 1.2:+68770458 | MS.gene60546:CDS |
| TGCCCAGAAGAAGCACATAG+TGG | 0.542796 | 1.2:+68773298 | MS.gene60546:CDS |
| ACAGAAGATGACGGTGATGA+TGG | 0.543703 | 1.2:+68773913 | MS.gene60546:CDS |
| ATAAAGATCCCATAATATTG+TGG | 0.545906 | 1.2:-68767067 | None:intergenic |
| ACACCGTCTATCTCTGGAAG+TGG | 0.547187 | 1.2:+68770981 | MS.gene60546:CDS |
| AGCAAGAAATCAAGATTCGC+GGG | 0.549836 | 1.2:-68761619 | None:intergenic |
| TTCAGCATGCAATGATTGCA+TGG | 0.551343 | 1.2:-68773644 | None:intergenic |
| AAGATTCACATTTCTAGTAG+TGG | 0.553387 | 1.2:+68773769 | MS.gene60546:CDS |
| GCATTAGCTAATGGAGCCAT+GGG | 0.557242 | 1.2:+68769636 | MS.gene60546:CDS |
| GTTCCCACACGATCAGAAAA+CGG | 0.557307 | 1.2:-68770960 | None:intergenic |
| AATGACTTGTGGAGAATAAG+TGG | 0.557540 | 1.2:+68767228 | MS.gene60546:CDS |
| GTGTCTCTTAGAGAGGTTGT+TGG | 0.559932 | 1.2:-68761441 | None:intergenic |
| AGGCTAAAGAAGTGGCAGAA+AGG | 0.561343 | 1.2:+68773599 | MS.gene60546:intron |
| CACTCATGGCAGAACATCAT+CGG | 0.561431 | 1.2:+68769867 | MS.gene60546:CDS |
| GCCCAGAAGAAGCACATAGT+GGG | 0.563525 | 1.2:+68773299 | MS.gene60546:CDS |
| GCTGATAGGCGGGCATCAGA+AGG | 0.564887 | 1.2:+68773157 | MS.gene60546:CDS |
| CTTGTCAATACAGATGATGC+AGG | 0.565899 | 1.2:+68764499 | MS.gene60546:CDS |
| GGGAGATTGAAGCACAATGT+AGG | 0.566070 | 1.2:+68773320 | MS.gene60546:CDS |
| ATAACCATCCACTGTCCCCA+AGG | 0.568590 | 1.2:-68770462 | None:intergenic |
| GGTGGGTCGATATGGGGTGG+CGG | 0.570020 | 1.2:+68770406 | MS.gene60546:CDS |
| GCTCGATGACGAACAAGTTG+TGG | 0.571654 | 1.2:+68761639 | MS.gene60546:CDS |
| AATGGTGGTTGTGCTCAACT+AGG | 0.572409 | 1.2:+68774009 | MS.gene60546:CDS |
| GGTGTTTACTTTCAGGGACA+CGG | 0.575985 | 1.2:+68764469 | MS.gene60546:intron |
| TGATTCTGAACCACCTCCCA+TGG | 0.576170 | 1.2:-68769652 | None:intergenic |
| ACCTGCAGCAGTCTTTGTGT+TGG | 0.577544 | 1.2:-68766018 | None:intergenic |
| TTGTATTGTTCCTCTAGGCA+AGG | 0.577976 | 1.2:+68773841 | MS.gene60546:CDS |
| TTGGTAGTGATGGATGGGAT+AGG | 0.578391 | 1.2:+68770667 | MS.gene60546:intron |
| AAGTGATGATGAAGTGCTCC+AGG | 0.578623 | 1.2:+68767423 | MS.gene60546:intron |
| AACTTCTCAATGGTTGCTAG+TGG | 0.579962 | 1.2:-68765323 | None:intergenic |
| GACATTGAAAACAACCCAGC+GGG | 0.581375 | 1.2:+68773805 | MS.gene60546:CDS |
| GGGCATACTTGGCTGATAGG+CGG | 0.581465 | 1.2:+68773146 | MS.gene60546:CDS |
| TTGGTCTCATGATGAATATG+AGG | 0.582357 | 1.2:+68767676 | MS.gene60546:CDS |
| ACCTCTTTGAGCCATCGTCA+AGG | 0.583283 | 1.2:-68768157 | None:intergenic |
| CAGGCAGACGGCATCTTGCA+CGG | 0.585052 | 1.2:-68767456 | None:intergenic |
| CTTTGTGGCAACCTTGACGA+TGG | 0.587381 | 1.2:+68768146 | MS.gene60546:CDS |
| CAAGTCATTTGACAGGGTGA+AGG | 0.587579 | 1.2:-68767214 | None:intergenic |
| GAGAGGTTGTTGGTGTGGCA+CGG | 0.588469 | 1.2:-68761431 | None:intergenic |
| GGTTCTGTTTAGAGACATGG+TGG | 0.592082 | 1.2:+68770388 | MS.gene60546:intron |
| AGAGGACCGCTGTACTTCAG+TGG | 0.593225 | 1.2:-68773214 | None:intergenic |
| AGTTTGGATGTGCTCCCGCT+GGG | 0.595582 | 1.2:-68773819 | None:intergenic |
| GAGCAAGAAATCAAGATTCG+CGG | 0.598188 | 1.2:-68761620 | None:intergenic |
| CATATTATCGGACATTCAGA+GGG | 0.598656 | 1.2:+68770730 | MS.gene60546:CDS |
| GTATCAACCCTTGGGGACAG+TGG | 0.598834 | 1.2:+68770454 | MS.gene60546:CDS |
| CGAGAATTCATAGACACTCA+TGG | 0.599136 | 1.2:+68769853 | MS.gene60546:CDS |
| TCTTAGAGAGGTTGTTGGTG+TGG | 0.603090 | 1.2:-68761436 | None:intergenic |
| TTCATCATGAGACCAACTAA+AGG | 0.603931 | 1.2:-68767669 | None:intergenic |
| CCAAAGCAAATGGATAACTC+TGG | 0.604966 | 1.2:-68767275 | None:intergenic |
| GTCAGATGTGTCTCTTAGAG+AGG | 0.605249 | 1.2:-68761448 | None:intergenic |
| CTATGTGCATGAGATGGAGC+TGG | 0.608013 | 1.2:-68771086 | None:intergenic |
| GAGGTGTTCTTAAAAGTGGA+AGG | 0.610307 | 1.2:-68767105 | None:intergenic |
| CCTGAACTATGTGCATGAGA+TGG | 0.611367 | 1.2:-68771092 | None:intergenic |
| CGAAAGATGGAGGCTGCAGG+TGG | 0.612620 | 1.2:+68773983 | MS.gene60546:CDS |
| ACCAAGAAATTACAGGCAGA+CGG | 0.615128 | 1.2:-68767468 | None:intergenic |
| CATTATTAAGGCTTTCCTGG+TGG | 0.615141 | 1.2:+68772167 | MS.gene60546:intron |
| ATGGTAACAGGCTAAAGAAG+TGG | 0.615148 | 1.2:+68773591 | MS.gene60546:intron |
| GTCAAGGTTGCCACAAAGTG+CGG | 0.618707 | 1.2:-68768141 | None:intergenic |
| AAGGGCATCCCAGCTACCGG+TGG | 0.625691 | 1.2:-68761475 | None:intergenic |
| CATGGCAGAACATCATCGGA+TGG | 0.626026 | 1.2:+68769871 | MS.gene60546:CDS |
| AGACATGGTGGGTCGATATG+GGG | 0.626724 | 1.2:+68770400 | MS.gene60546:CDS |
| GACACATCTGACTCCTCCAC+CGG | 0.627294 | 1.2:+68761459 | MS.gene60546:CDS |
| TGCAGTCTAAGAAGTCCACC+AGG | 0.629081 | 1.2:-68772182 | None:intergenic |
| GCTGGCGCATTGGTGATGAT+GGG | 0.632732 | 1.2:-68771046 | None:intergenic |
| TCAATGGACATGATTGAAAG+TGG | 0.636766 | 1.2:+68767189 | MS.gene60546:CDS |
| CATGGTGGGTCGATATGGGG+TGG | 0.639162 | 1.2:+68770403 | MS.gene60546:CDS |
| CAATAATCGCACCATTGGAG+AGG | 0.640586 | 1.2:-68767124 | None:intergenic |
| ATATCGCTGATGCGAGACCA+AGG | 0.640867 | 1.2:+68769607 | MS.gene60546:CDS |
| TCTCCACAAGTCATTTGACA+GGG | 0.643859 | 1.2:-68767220 | None:intergenic |
| GTCTCATGATGAATATGAGG+AGG | 0.645065 | 1.2:+68767679 | MS.gene60546:CDS |
| GCTGGCGGTAATGTCCCTGA+TGG | 0.645642 | 1.2:-68771068 | None:intergenic |
| CCGTTTCGTACGAAAGATGG+AGG | 0.645973 | 1.2:+68773973 | MS.gene60546:CDS |
| CTTCTGGGCAAGCCCAACGA+AGG | 0.647320 | 1.2:-68773285 | None:intergenic |
| GATAGGCGGGCATCAGAAGG+AGG | 0.651664 | 1.2:+68773160 | MS.gene60546:CDS |
| TAACCATCCACTGTCCCCAA+GGG | 0.651855 | 1.2:-68770461 | None:intergenic |
| CAGCTATGAACACAGCGAAG+AGG | 0.653446 | 1.2:+68773695 | MS.gene60546:CDS |
| CCCAGAAGAAGCACATAGTG+GGG | 0.655565 | 1.2:+68773300 | MS.gene60546:CDS |
| GCCCAACGAAGGTGAAATTG+GGG | 0.657364 | 1.2:-68773274 | None:intergenic |
| TTTCCACTTCCAGAGATAGA+CGG | 0.662759 | 1.2:-68770984 | None:intergenic |
| ACCTTGACGATGGCTCAAAG+AGG | 0.665568 | 1.2:+68768156 | MS.gene60546:CDS |
| TTAGCTAATGGAGCCATGGG+AGG | 0.673806 | 1.2:+68769639 | MS.gene60546:CDS |
| TGCTTCAGTATCAACCCTTG+GGG | 0.678743 | 1.2:+68770447 | MS.gene60546:CDS |
| ACTACTTGATCCTTGCCTAG+AGG | 0.684942 | 1.2:-68773851 | None:intergenic |
| ATGTCTGTAACAGAAGATGA+CGG | 0.688061 | 1.2:+68773904 | MS.gene60546:CDS |
| GTTCTGTTTAGAGACATGGT+GGG | 0.696169 | 1.2:+68770389 | MS.gene60546:intron |
| TATGATCCACTGAAGTACAG+CGG | 0.717034 | 1.2:+68773208 | MS.gene60546:CDS |
| AAATTGGGGCCATATAGTCG+GGG | 0.720716 | 1.2:-68773260 | None:intergenic |
| TGTGCATGAGATGGAGCTGG+CGG | 0.759017 | 1.2:-68771083 | None:intergenic |
| ATTGTGTGTCACAACTACTG+CGG | 0.765787 | 1.2:+68772035 | MS.gene60546:CDS |
| TGACATTGAAAACAACCCAG+CGG | 0.773121 | 1.2:+68773804 | MS.gene60546:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 68761414 | 68774113 | 68761414 | ID=MS.gene60546 |
| chr1.2 | mRNA | 68761414 | 68774113 | 68761414 | ID=MS.gene60546.t1;Parent=MS.gene60546 |
| chr1.2 | exon | 68761414 | 68761515 | 68761414 | ID=MS.gene60546.t1.exon1;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68761414 | 68761515 | 68761414 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68761598 | 68761666 | 68761598 | ID=MS.gene60546.t1.exon2;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68761598 | 68761666 | 68761598 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68764484 | 68764558 | 68764484 | ID=MS.gene60546.t1.exon3;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68764484 | 68764558 | 68764484 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68765284 | 68765355 | 68765284 | ID=MS.gene60546.t1.exon4;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68765284 | 68765355 | 68765284 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68765976 | 68766045 | 68765976 | ID=MS.gene60546.t1.exon5;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68765976 | 68766045 | 68765976 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68766414 | 68766463 | 68766414 | ID=MS.gene60546.t1.exon6;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68766414 | 68766463 | 68766414 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68767027 | 68767316 | 68767027 | ID=MS.gene60546.t1.exon7;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68767027 | 68767316 | 68767027 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68767426 | 68767499 | 68767426 | ID=MS.gene60546.t1.exon8;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68767426 | 68767499 | 68767426 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68767637 | 68767700 | 68767637 | ID=MS.gene60546.t1.exon9;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68767637 | 68767700 | 68767637 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68768118 | 68768177 | 68768118 | ID=MS.gene60546.t1.exon10;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68768118 | 68768177 | 68768118 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68769599 | 68769698 | 68769599 | ID=MS.gene60546.t1.exon11;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68769599 | 68769698 | 68769599 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68769796 | 68769909 | 68769796 | ID=MS.gene60546.t1.exon12;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68769796 | 68769909 | 68769796 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68770400 | 68770569 | 68770400 | ID=MS.gene60546.t1.exon13;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68770400 | 68770569 | 68770400 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68770674 | 68770758 | 68770674 | ID=MS.gene60546.t1.exon14;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68770674 | 68770758 | 68770674 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68770924 | 68771139 | 68770924 | ID=MS.gene60546.t1.exon15;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68770924 | 68771139 | 68770924 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68772028 | 68772087 | 68772028 | ID=MS.gene60546.t1.exon16;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68772028 | 68772087 | 68772028 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68772177 | 68772241 | 68772177 | ID=MS.gene60546.t1.exon17;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68772177 | 68772241 | 68772177 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68773096 | 68773375 | 68773096 | ID=MS.gene60546.t1.exon18;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68773096 | 68773375 | 68773096 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| chr1.2 | exon | 68773601 | 68774113 | 68773601 | ID=MS.gene60546.t1.exon19;Parent=MS.gene60546.t1 |
| chr1.2 | CDS | 68773601 | 68774113 | 68773601 | ID=cds.MS.gene60546.t1;Parent=MS.gene60546.t1 |
| Gene Sequence |
| Protein sequence |
