Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61035.t1 | KEH16899.1 | 74.9 | 323 | 81 | 0 | 7 | 329 | 11 | 333 | 1.80E-143 | 518.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61035.t1 | P52839 | 50.9 | 328 | 155 | 2 | 2 | 329 | 3 | 324 | 3.8e-94 | 346.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61035.t1 | G7IXE9 | 74.9 | 323 | 81 | 0 | 7 | 329 | 11 | 333 | 1.3e-143 | 518.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054277 | MS.gene61035 | 0.820042 | 8.45E-53 | -1.69E-46 |
| MS.gene054742 | MS.gene61035 | 0.821239 | 4.49E-53 | -1.69E-46 |
| MS.gene056330 | MS.gene61035 | 0.806925 | 6.49E-50 | -1.69E-46 |
| MS.gene056920 | MS.gene61035 | 0.811815 | 5.80E-51 | -1.69E-46 |
| MS.gene056924 | MS.gene61035 | 0.801176 | 1.02E-48 | -1.69E-46 |
| MS.gene060087 | MS.gene61035 | 0.802156 | 6.41E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55382 | MS.gene61035 | PPI |
| MS.gene61035 | MS.gene53169 | PPI |
| MS.gene61035 | MS.gene99693 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61035.t1 | MTR_0071s0010 | 74.923 | 323 | 81 | 0 | 7 | 329 | 11 | 333 | 0.0 | 514 |
| MS.gene61035.t1 | MTR_3g046670 | 74.923 | 323 | 81 | 0 | 7 | 329 | 11 | 333 | 0.0 | 514 |
| MS.gene61035.t1 | MTR_3g435130 | 72.171 | 327 | 91 | 0 | 3 | 329 | 8 | 334 | 5.45e-180 | 501 |
| MS.gene61035.t1 | MTR_8g066220 | 69.419 | 327 | 99 | 1 | 3 | 329 | 8 | 333 | 6.05e-168 | 470 |
| MS.gene61035.t1 | MTR_8g066210 | 67.584 | 327 | 90 | 2 | 3 | 329 | 8 | 318 | 1.11e-159 | 449 |
| MS.gene61035.t1 | MTR_3g013500 | 52.351 | 319 | 151 | 1 | 11 | 329 | 20 | 337 | 5.57e-121 | 352 |
| MS.gene61035.t1 | MTR_7g007710 | 50.621 | 322 | 147 | 4 | 15 | 329 | 16 | 332 | 1.12e-114 | 335 |
| MS.gene61035.t1 | MTR_7g007680 | 47.799 | 318 | 157 | 4 | 15 | 329 | 22 | 333 | 6.00e-107 | 317 |
| MS.gene61035.t1 | MTR_8g040820 | 46.708 | 319 | 165 | 4 | 15 | 329 | 27 | 344 | 1.85e-105 | 312 |
| MS.gene61035.t1 | MTR_8g035720 | 45.897 | 329 | 174 | 2 | 5 | 329 | 78 | 406 | 2.24e-105 | 314 |
| MS.gene61035.t1 | MTR_8g040430 | 45.566 | 327 | 172 | 5 | 8 | 329 | 20 | 345 | 3.35e-101 | 301 |
| MS.gene61035.t1 | MTR_8g040490 | 45.963 | 322 | 170 | 3 | 11 | 329 | 23 | 343 | 4.28e-101 | 303 |
| MS.gene61035.t1 | MTR_8g066280 | 73.936 | 188 | 49 | 0 | 142 | 329 | 22 | 209 | 6.64e-98 | 288 |
| MS.gene61035.t1 | MTR_8g041790 | 46.082 | 319 | 148 | 6 | 16 | 329 | 26 | 325 | 9.82e-97 | 290 |
| MS.gene61035.t1 | MTR_8g040520 | 48.254 | 315 | 155 | 4 | 11 | 321 | 23 | 333 | 1.40e-93 | 282 |
| MS.gene61035.t1 | MTR_3g434790 | 69.061 | 181 | 56 | 0 | 149 | 329 | 54 | 234 | 2.56e-88 | 265 |
| MS.gene61035.t1 | MTR_3g434790 | 65.306 | 49 | 17 | 0 | 3 | 51 | 9 | 57 | 6.72e-14 | 70.5 |
| MS.gene61035.t1 | MTR_8g040250 | 42.540 | 315 | 141 | 6 | 19 | 329 | 15 | 293 | 1.91e-81 | 249 |
| MS.gene61035.t1 | MTR_8g014380 | 43.729 | 295 | 125 | 5 | 15 | 307 | 26 | 281 | 2.18e-78 | 241 |
| MS.gene61035.t1 | MTR_8g040820 | 46.119 | 219 | 114 | 3 | 115 | 329 | 27 | 245 | 3.19e-69 | 216 |
| MS.gene61035.t1 | MTR_8g040430 | 46.575 | 219 | 113 | 3 | 115 | 329 | 27 | 245 | 3.08e-67 | 211 |
| MS.gene61035.t1 | MTR_8g040730 | 51.381 | 181 | 79 | 5 | 73 | 248 | 39 | 215 | 1.00e-45 | 163 |
| MS.gene61035.t1 | MTR_8g040730 | 46.386 | 166 | 83 | 3 | 16 | 179 | 342 | 503 | 7.84e-38 | 141 |
| MS.gene61035.t1 | MTR_8g040710 | 50.676 | 148 | 71 | 1 | 174 | 319 | 135 | 282 | 1.74e-44 | 154 |
| MS.gene61035.t1 | MTR_8g066190 | 61.111 | 108 | 24 | 1 | 222 | 329 | 3 | 92 | 4.01e-35 | 123 |
| MS.gene61035.t1 | MTR_8g040315 | 44.882 | 127 | 69 | 1 | 203 | 329 | 7 | 132 | 5.45e-27 | 103 |
| MS.gene61035.t1 | MTR_8g040410 | 49.153 | 59 | 29 | 1 | 62 | 119 | 22 | 80 | 1.27e-12 | 65.1 |
| MS.gene61035.t1 | MTR_8g040410 | 33.708 | 89 | 41 | 1 | 213 | 301 | 75 | 145 | 1.67e-11 | 62.0 |
| MS.gene61035.t1 | MTR_8g066200 | 50.847 | 59 | 29 | 0 | 126 | 184 | 4 | 62 | 3.73e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61035.t1 | AT3G45070 | 53.312 | 317 | 145 | 3 | 14 | 329 | 9 | 323 | 4.11e-114 | 333 |
| MS.gene61035.t1 | AT3G45070 | 53.312 | 317 | 145 | 3 | 14 | 329 | 14 | 328 | 4.31e-114 | 333 |
| MS.gene61035.t1 | AT3G45070 | 53.312 | 317 | 145 | 3 | 14 | 329 | 41 | 355 | 5.21e-114 | 334 |
| MS.gene61035.t1 | AT5G07010 | 48.923 | 325 | 164 | 2 | 6 | 329 | 33 | 356 | 1.15e-112 | 331 |
| MS.gene61035.t1 | AT2G03760 | 50.610 | 328 | 156 | 2 | 2 | 329 | 3 | 324 | 1.94e-112 | 329 |
| MS.gene61035.t1 | AT5G07000 | 46.894 | 322 | 167 | 3 | 11 | 329 | 24 | 344 | 1.85e-106 | 315 |
| MS.gene61035.t1 | AT3G45080 | 51.258 | 318 | 151 | 4 | 14 | 329 | 14 | 329 | 1.23e-104 | 310 |
| MS.gene61035.t1 | AT2G03770 | 48.137 | 322 | 154 | 3 | 2 | 321 | 4 | 314 | 1.25e-103 | 307 |
| MS.gene61035.t1 | AT1G13420 | 51.613 | 310 | 142 | 4 | 20 | 327 | 26 | 329 | 4.31e-102 | 303 |
| MS.gene61035.t1 | AT1G28170 | 51.360 | 331 | 154 | 6 | 1 | 329 | 1 | 326 | 9.81e-101 | 300 |
| MS.gene61035.t1 | AT2G03750 | 46.914 | 324 | 169 | 3 | 6 | 329 | 30 | 350 | 4.74e-96 | 288 |
| MS.gene61035.t1 | AT4G26280 | 49.363 | 314 | 138 | 3 | 10 | 321 | 7 | 301 | 1.23e-94 | 283 |
| MS.gene61035.t1 | AT5G43690 | 46.177 | 327 | 171 | 4 | 6 | 329 | 7 | 331 | 3.13e-93 | 281 |
| MS.gene61035.t1 | AT2G14920 | 45.397 | 315 | 164 | 4 | 20 | 329 | 22 | 333 | 3.84e-89 | 270 |
| MS.gene61035.t1 | AT1G18590 | 44.620 | 316 | 159 | 7 | 20 | 327 | 34 | 341 | 3.32e-86 | 263 |
| MS.gene61035.t1 | AT1G74100 | 43.175 | 315 | 165 | 5 | 20 | 327 | 26 | 333 | 1.36e-84 | 259 |
| MS.gene61035.t1 | AT1G13430 | 45.897 | 329 | 156 | 5 | 20 | 329 | 26 | 351 | 1.01e-83 | 257 |
| MS.gene61035.t1 | AT2G27570 | 43.438 | 320 | 125 | 4 | 10 | 329 | 10 | 273 | 8.97e-82 | 249 |
| MS.gene61035.t1 | AT1G74090 | 43.987 | 316 | 161 | 6 | 20 | 327 | 38 | 345 | 5.64e-78 | 242 |
Find 70 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGTTCTTGTTCCCTTCT+TGG | 0.120522 | 8.1:-38226621 | MS.gene61035:CDS |
| TCATATTCTTCCAGGTATTT+TGG | 0.148231 | 8.1:+38226926 | None:intergenic |
| GTTGAGTCTTTGATAGATTT+TGG | 0.150128 | 8.1:+38226503 | None:intergenic |
| TCCACCAATATCAAGGATTT+TGG | 0.206103 | 8.1:-38226835 | MS.gene61035:CDS |
| GAGCCAAGTGGTACCTGATT+TGG | 0.249783 | 8.1:+38226727 | None:intergenic |
| CAAGTTAAGACCACATAGTA+TGG | 0.260814 | 8.1:-38226414 | MS.gene61035:CDS |
| CTCTCGAATGCCTCTTCTAA+TGG | 0.302803 | 8.1:+38226383 | None:intergenic |
| GATCTATGTCATATTCTTCC+AGG | 0.328322 | 8.1:+38226918 | None:intergenic |
| AGCCAAGTGGTACCTGATTT+GGG | 0.328372 | 8.1:+38226728 | None:intergenic |
| AGTGAAACAAAAGTGTCTTT+TGG | 0.331004 | 8.1:+38226452 | None:intergenic |
| GGGAGCATGTATTAGGATAT+TGG | 0.331818 | 8.1:-38226325 | MS.gene61035:CDS |
| TGAGTCCAATGGGACCCTTT+TGG | 0.353951 | 8.1:-38226346 | MS.gene61035:CDS |
| GTAATCATCCCTTTCTCTAA+TGG | 0.365334 | 8.1:+38226866 | None:intergenic |
| TATATCACCAACCACACCTT+TGG | 0.375797 | 8.1:+38226175 | None:intergenic |
| ACACCATCACCGAAGAGAAA+TGG | 0.403373 | 8.1:-38226001 | MS.gene61035:CDS |
| AAGACTGGGAAATTGCCTTC+TGG | 0.423203 | 8.1:-38226107 | MS.gene61035:CDS |
| TTTGCCAAAATCCTTGATAT+TGG | 0.424451 | 8.1:+38226831 | None:intergenic |
| CAAACTTTGCCATTAGAGAA+AGG | 0.427827 | 8.1:-38226875 | MS.gene61035:CDS |
| TCCTAATACATGCTCCCAAA+AGG | 0.430142 | 8.1:+38226331 | None:intergenic |
| TATCAAAGACTCAACTTGTA+AGG | 0.438404 | 8.1:-38226495 | MS.gene61035:CDS |
| CACCATCACCGAAGAGAAAT+GGG | 0.438512 | 8.1:-38226000 | MS.gene61035:CDS |
| CACTCTTGTGCCAAAATACC+TGG | 0.441749 | 8.1:-38226936 | MS.gene61035:CDS |
| CTACGATTATATCTGTATCA+TGG | 0.444290 | 8.1:+38226759 | None:intergenic |
| AGCCCATTTCTCTTCGGTGA+TGG | 0.452813 | 8.1:+38225998 | None:intergenic |
| GCCAAAATCCTTGATATTGG+TGG | 0.461798 | 8.1:+38226834 | None:intergenic |
| ATGTTTAGCCCATTTCTCTT+CGG | 0.462362 | 8.1:+38225992 | None:intergenic |
| GTAGCTACCACTCCCAAATC+AGG | 0.473936 | 8.1:-38226740 | MS.gene61035:CDS |
| TGCTCCCAAAAGGGTCCCAT+TGG | 0.483845 | 8.1:+38226341 | None:intergenic |
| TGTAGAGGAGTGAGTCCAAT+GGG | 0.487163 | 8.1:-38226356 | MS.gene61035:CDS |
| AAACTTTGCCATTAGAGAAA+GGG | 0.495208 | 8.1:-38226874 | MS.gene61035:CDS |
| TGTGTAGAGAAGAGCCTTGG+AGG | 0.501089 | 8.1:+38226545 | None:intergenic |
| TGATTGTTATCATGAATGTC+TGG | 0.504371 | 8.1:+38226665 | None:intergenic |
| AACTTGGAGACTAATAAGAC+TGG | 0.507602 | 8.1:-38226122 | MS.gene61035:CDS |
| GGGGATAATGAATCTAGATC+AGG | 0.515231 | 8.1:+38226566 | None:intergenic |
| AGATGTGTAGAGAAGAGCCT+TGG | 0.519657 | 8.1:+38226542 | None:intergenic |
| TACGATTATATCTGTATCAT+GGG | 0.520155 | 8.1:+38226760 | None:intergenic |
| CCTAATACATGCTCCCAAAA+GGG | 0.526000 | 8.1:+38226332 | None:intergenic |
| CCCTACGTCCACCAATATCA+AGG | 0.532931 | 8.1:-38226842 | MS.gene61035:CDS |
| CCTTGATATTGGTGGACGTA+GGG | 0.539308 | 8.1:+38226842 | None:intergenic |
| CAAACCACACAAGATCTTCA+AGG | 0.542152 | 8.1:-38226812 | MS.gene61035:CDS |
| GAAGAGAAATGGGCTAAACA+TGG | 0.550159 | 8.1:-38225990 | MS.gene61035:CDS |
| CTCCCAAATCAGGTACCACT+TGG | 0.552250 | 8.1:-38226730 | MS.gene61035:CDS |
| ATATTTCTTGCGGTTGAGCA+AGG | 0.554333 | 8.1:+38226688 | None:intergenic |
| TTCTTTCGTCGAGGCCAAGT+TGG | 0.555525 | 8.1:-38226068 | MS.gene61035:CDS |
| GTGTAGAGAAGAGCCTTGGA+GGG | 0.561070 | 8.1:+38226546 | None:intergenic |
| GTAAAGGGTAAGTTCCAAGA+AGG | 0.564258 | 8.1:+38226607 | None:intergenic |
| GAAGAATCCAAAGGTGTGGT+TGG | 0.575305 | 8.1:-38226182 | MS.gene61035:CDS |
| GCATGTATTAGGATATTGGA+AGG | 0.589635 | 8.1:-38226321 | MS.gene61035:CDS |
| AACTCCTTGAAGATCTTGTG+TGG | 0.593904 | 8.1:+38226808 | None:intergenic |
| TCTCAGATGAAATGATTGAA+CGG | 0.595222 | 8.1:-38226028 | MS.gene61035:CDS |
| TGAGGGTTGTTAGTAAGCAA+AGG | 0.595498 | 8.1:+38226641 | None:intergenic |
| TAAAGGGTAAGTTCCAAGAA+GGG | 0.605054 | 8.1:+38226608 | None:intergenic |
| AAGAAGGGAACAAGAACATG+AGG | 0.606385 | 8.1:+38226623 | None:intergenic |
| TTGTAGAGGAGTGAGTCCAA+TGG | 0.609516 | 8.1:-38226357 | MS.gene61035:CDS |
| TAGATTCATTATCCCCTCCA+AGG | 0.609856 | 8.1:-38226559 | MS.gene61035:CDS |
| AGTGGTACCTGATTTGGGAG+TGG | 0.613042 | 8.1:+38226733 | None:intergenic |
| GAATGTCTGGATATTTCTTG+CGG | 0.615347 | 8.1:+38226678 | None:intergenic |
| GGGAACACTTCCATTAGAAG+AGG | 0.620898 | 8.1:-38226393 | MS.gene61035:CDS |
| AAGAGAAATGGGCTAAACAT+GGG | 0.623036 | 8.1:-38225989 | MS.gene61035:CDS |
| AAGTTAAGACCACATAGTAT+GGG | 0.623958 | 8.1:-38226413 | MS.gene61035:CDS |
| TGTAGAGAAGAGCCTTGGAG+GGG | 0.624064 | 8.1:+38226547 | None:intergenic |
| GGAAGTGTTCCCATACTATG+TGG | 0.626639 | 8.1:+38226404 | None:intergenic |
| CAAAGACTCAACTTGTAAGG+TGG | 0.630632 | 8.1:-38226492 | MS.gene61035:CDS |
| ACTTGGAGACTAATAAGACT+GGG | 0.632456 | 8.1:-38226121 | MS.gene61035:CDS |
| AGAAGAAGAATCCAAAGGTG+TGG | 0.632605 | 8.1:-38226186 | MS.gene61035:CDS |
| TGTCAATGCTTTGAGCCAAG+TGG | 0.645676 | 8.1:+38226715 | None:intergenic |
| ACAAAAGAAGAAGAATCCAA+AGG | 0.648101 | 8.1:-38226191 | MS.gene61035:CDS |
| TGGCACAAGAGTGTTTGCCA+TGG | 0.653319 | 8.1:+38226946 | None:intergenic |
| TCCTTGATATTGGTGGACGT+AGG | 0.684594 | 8.1:+38226841 | None:intergenic |
| AGAAGGGAACAAGAACATGA+GGG | 0.690046 | 8.1:+38226624 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATCTTTTTTAAAGTAAA+GGG | + | chr8.1:38226332-38226351 | None:intergenic | 10.0% |
| !!! | ATCTTTTTCAAATAAAAACT+AGG | + | chr8.1:38226685-38226704 | None:intergenic | 15.0% |
| !!! | GAATATCTTTTTTAAAGTAA+AGG | + | chr8.1:38226333-38226352 | None:intergenic | 15.0% |
| !!! | TCTTTTTCAAATAAAAACTA+GGG | + | chr8.1:38226684-38226703 | None:intergenic | 15.0% |
| !!! | GAAAAAGATTGCTAAATTTT+TGG | - | chr8.1:38226696-38226715 | MS.gene61035:CDS | 20.0% |
| ! | TACGATTATATCTGTATCAT+GGG | + | chr8.1:38226164-38226183 | None:intergenic | 25.0% |
| !! | AATAATATTTTCTTTCGTCG+AGG | - | chr8.1:38226844-38226863 | MS.gene61035:CDS | 25.0% |
| !! | GATTCTTCTTCTTTTGTAAA+TGG | + | chr8.1:38226727-38226746 | None:intergenic | 25.0% |
| !!! | ATATTATTTTGTTCACCAGA+AGG | + | chr8.1:38226832-38226851 | None:intergenic | 25.0% |
| AAACTTTGCCATTAGAGAAA+GGG | - | chr8.1:38226047-38226066 | MS.gene61035:CDS | 30.0% | |
| AAGTTAAGACCACATAGTAT+GGG | - | chr8.1:38226508-38226527 | MS.gene61035:CDS | 30.0% | |
| ACAAAAGAAGAAGAATCCAA+AGG | - | chr8.1:38226730-38226749 | MS.gene61035:CDS | 30.0% | |
| CTACGATTATATCTGTATCA+TGG | + | chr8.1:38226165-38226184 | None:intergenic | 30.0% | |
| TATCAAAGACTCAACTTGTA+AGG | - | chr8.1:38226426-38226445 | MS.gene61035:CDS | 30.0% | |
| TCTCAGATGAAATGATTGAA+CGG | - | chr8.1:38226893-38226912 | MS.gene61035:CDS | 30.0% | |
| TGATTGTTATCATGAATGTC+TGG | + | chr8.1:38226259-38226278 | None:intergenic | 30.0% | |
| TTTGCCAAAATCCTTGATAT+TGG | + | chr8.1:38226093-38226112 | None:intergenic | 30.0% | |
| ! | GTTGAGTCTTTGATAGATTT+TGG | + | chr8.1:38226421-38226440 | None:intergenic | 30.0% |
| ! | TCATATTCTTCCAGGTATTT+TGG | + | chr8.1:38225998-38226017 | None:intergenic | 30.0% |
| !! | AATTTTTGCTATCTCCAACT+TGG | + | chr8.1:38226870-38226889 | None:intergenic | 30.0% |
| !! | TTTTGAGAATCTAAGCAACT+TGG | - | chr8.1:38226783-38226802 | MS.gene61035:CDS | 30.0% |
| !!! | AGTGAAACAAAAGTGTCTTT+TGG | + | chr8.1:38226472-38226491 | None:intergenic | 30.0% |
| AACTTGGAGACTAATAAGAC+TGG | - | chr8.1:38226799-38226818 | MS.gene61035:CDS | 35.0% | |
| ACTTGGAGACTAATAAGACT+GGG | - | chr8.1:38226800-38226819 | MS.gene61035:CDS | 35.0% | |
| ATGTTTAGCCCATTTCTCTT+CGG | + | chr8.1:38226932-38226951 | None:intergenic | 35.0% | |
| CAAACTTTGCCATTAGAGAA+AGG | - | chr8.1:38226046-38226065 | MS.gene61035:CDS | 35.0% | |
| CAAGTTAAGACCACATAGTA+TGG | - | chr8.1:38226507-38226526 | MS.gene61035:CDS | 35.0% | |
| GAATGTCTGGATATTTCTTG+CGG | + | chr8.1:38226246-38226265 | None:intergenic | 35.0% | |
| GATCTATGTCATATTCTTCC+AGG | + | chr8.1:38226006-38226025 | None:intergenic | 35.0% | |
| GCATGTATTAGGATATTGGA+AGG | - | chr8.1:38226600-38226619 | MS.gene61035:CDS | 35.0% | |
| GTAATCATCCCTTTCTCTAA+TGG | + | chr8.1:38226058-38226077 | None:intergenic | 35.0% | |
| TAAAGGGTAAGTTCCAAGAA+GGG | + | chr8.1:38226316-38226335 | None:intergenic | 35.0% | |
| ! | TCCACCAATATCAAGGATTT+TGG | - | chr8.1:38226086-38226105 | MS.gene61035:CDS | 35.0% |
| !! | AAGAGAAATGGGCTAAACAT+GGG | - | chr8.1:38226932-38226951 | MS.gene61035:CDS | 35.0% |
| AACTCCTTGAAGATCTTGTG+TGG | + | chr8.1:38226116-38226135 | None:intergenic | 40.0% | |
| AAGAAGGGAACAAGAACATG+AGG | + | chr8.1:38226301-38226320 | None:intergenic | 40.0% | |
| AGAAGAAGAATCCAAAGGTG+TGG | - | chr8.1:38226735-38226754 | MS.gene61035:CDS | 40.0% | |
| AGAAGGGAACAAGAACATGA+GGG | + | chr8.1:38226300-38226319 | None:intergenic | 40.0% | |
| ATATTTCTTGCGGTTGAGCA+AGG | + | chr8.1:38226236-38226255 | None:intergenic | 40.0% | |
| CAAACCACACAAGATCTTCA+AGG | - | chr8.1:38226109-38226128 | MS.gene61035:CDS | 40.0% | |
| CAAAGACTCAACTTGTAAGG+TGG | - | chr8.1:38226429-38226448 | MS.gene61035:CDS | 40.0% | |
| CCTAATACATGCTCCCAAAA+GGG | + | chr8.1:38226592-38226611 | None:intergenic | 40.0% | |
| GCCAAAATCCTTGATATTGG+TGG | + | chr8.1:38226090-38226109 | None:intergenic | 40.0% | |
| GGGGATAATGAATCTAGATC+AGG | + | chr8.1:38226358-38226377 | None:intergenic | 40.0% | |
| GTAAAGGGTAAGTTCCAAGA+AGG | + | chr8.1:38226317-38226336 | None:intergenic | 40.0% | |
| TAGATTCATTATCCCCTCCA+AGG | - | chr8.1:38226362-38226381 | MS.gene61035:CDS | 40.0% | |
| TATATCACCAACCACACCTT+TGG | + | chr8.1:38226749-38226768 | None:intergenic | 40.0% | |
| TCATGTTCTTGTTCCCTTCT+TGG | - | chr8.1:38226300-38226319 | MS.gene61035:CDS | 40.0% | |
| TCCTAATACATGCTCCCAAA+AGG | + | chr8.1:38226593-38226612 | None:intergenic | 40.0% | |
| TGAGGGTTGTTAGTAAGCAA+AGG | + | chr8.1:38226283-38226302 | None:intergenic | 40.0% | |
| ! | GCATTCGAGAGTTTTTGTAG+AGG | - | chr8.1:38226550-38226569 | MS.gene61035:CDS | 40.0% |
| ! | GGGAGCATGTATTAGGATAT+TGG | - | chr8.1:38226596-38226615 | MS.gene61035:CDS | 40.0% |
| !! | GAAGAGAAATGGGCTAAACA+TGG | - | chr8.1:38226931-38226950 | MS.gene61035:CDS | 40.0% |
| AAGACTGGGAAATTGCCTTC+TGG | - | chr8.1:38226814-38226833 | MS.gene61035:CDS | 45.0% | |
| ACACCATCACCGAAGAGAAA+TGG | - | chr8.1:38226920-38226939 | MS.gene61035:CDS | 45.0% | |
| AGATGTGTAGAGAAGAGCCT+TGG | + | chr8.1:38226382-38226401 | None:intergenic | 45.0% | |
| AGCCAAGTGGTACCTGATTT+GGG | + | chr8.1:38226196-38226215 | None:intergenic | 45.0% | |
| CACCATCACCGAAGAGAAAT+GGG | - | chr8.1:38226921-38226940 | MS.gene61035:CDS | 45.0% | |
| CACTCTTGTGCCAAAATACC+TGG | - | chr8.1:38225985-38226004 | MS.gene61035:CDS | 45.0% | |
| CTCTCGAATGCCTCTTCTAA+TGG | + | chr8.1:38226541-38226560 | None:intergenic | 45.0% | |
| GGGAACACTTCCATTAGAAG+AGG | - | chr8.1:38226528-38226547 | MS.gene61035:CDS | 45.0% | |
| TGTAGAGGAGTGAGTCCAAT+GGG | - | chr8.1:38226565-38226584 | MS.gene61035:CDS | 45.0% | |
| TTGTAGAGGAGTGAGTCCAA+TGG | - | chr8.1:38226564-38226583 | MS.gene61035:CDS | 45.0% | |
| ! | CCTTGATATTGGTGGACGTA+GGG | + | chr8.1:38226082-38226101 | None:intergenic | 45.0% |
| ! | GAAGAATCCAAAGGTGTGGT+TGG | - | chr8.1:38226739-38226758 | MS.gene61035:CDS | 45.0% |
| ! | TCCTTGATATTGGTGGACGT+AGG | + | chr8.1:38226083-38226102 | None:intergenic | 45.0% |
| ! | TGTCAATGCTTTGAGCCAAG+TGG | + | chr8.1:38226209-38226228 | None:intergenic | 45.0% |
| !! | CCCTTTTGGGAGCATGTATT+AGG | - | chr8.1:38226589-38226608 | MS.gene61035:CDS | 45.0% |
| !! | GGAAGTGTTCCCATACTATG+TGG | + | chr8.1:38226520-38226539 | None:intergenic | 45.0% |
| AGCCCATTTCTCTTCGGTGA+TGG | + | chr8.1:38226926-38226945 | None:intergenic | 50.0% | |
| CCCTACGTCCACCAATATCA+AGG | - | chr8.1:38226079-38226098 | MS.gene61035:CDS | 50.0% | |
| CTCCCAAATCAGGTACCACT+TGG | - | chr8.1:38226191-38226210 | MS.gene61035:CDS | 50.0% | |
| GAGCCAAGTGGTACCTGATT+TGG | + | chr8.1:38226197-38226216 | None:intergenic | 50.0% | |
| GTAGCTACCACTCCCAAATC+AGG | - | chr8.1:38226181-38226200 | MS.gene61035:CDS | 50.0% | |
| GTGTAGAGAAGAGCCTTGGA+GGG | + | chr8.1:38226378-38226397 | None:intergenic | 50.0% | |
| TGTAGAGAAGAGCCTTGGAG+GGG | + | chr8.1:38226377-38226396 | None:intergenic | 50.0% | |
| TGTGTAGAGAAGAGCCTTGG+AGG | + | chr8.1:38226379-38226398 | None:intergenic | 50.0% | |
| TTCTTTCGTCGAGGCCAAGT+TGG | - | chr8.1:38226853-38226872 | MS.gene61035:CDS | 50.0% | |
| ! | GAGTCCAATGGGACCCTTTT+GGG | - | chr8.1:38226576-38226595 | MS.gene61035:CDS | 50.0% |
| ! | TGAGTCCAATGGGACCCTTT+TGG | - | chr8.1:38226575-38226594 | MS.gene61035:CDS | 50.0% |
| !! | AGTGGTACCTGATTTGGGAG+TGG | + | chr8.1:38226191-38226210 | None:intergenic | 50.0% |
| TGCTCCCAAAAGGGTCCCAT+TGG | + | chr8.1:38226583-38226602 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 38225977 | 38226966 | 38225977 | ID=MS.gene61035 |
| chr8.1 | mRNA | 38225977 | 38226966 | 38225977 | ID=MS.gene61035.t1;Parent=MS.gene61035 |
| chr8.1 | exon | 38225977 | 38226966 | 38225977 | ID=MS.gene61035.t1.exon1;Parent=MS.gene61035.t1 |
| chr8.1 | CDS | 38225977 | 38226966 | 38225977 | ID=cds.MS.gene61035.t1;Parent=MS.gene61035.t1 |
| Gene Sequence |
| Protein sequence |
