Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61056.t1 | XP_003628713.2 | 97.3 | 991 | 27 | 0 | 1 | 991 | 1 | 991 | 0.00E+00 | 1857.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61056.t1 | Q8L6J5 | 71.8 | 918 | 237 | 8 | 74 | 991 | 107 | 1002 | 0.0e+00 | 1332.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61056.t1 | A0A396GPC9 | 97.3 | 991 | 27 | 0 | 1 | 991 | 1 | 991 | 0.0e+00 | 1857.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050885 | MS.gene61056 | 0.835394 | 1.72E-56 | -1.69E-46 |
| MS.gene053617 | MS.gene61056 | 0.820206 | 7.75E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene61056 | 0.805762 | 1.14E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene61056 | 0.815826 | 7.57E-52 | -1.69E-46 |
| MS.gene056403 | MS.gene61056 | 0.893306 | 7.11E-75 | -1.69E-46 |
| MS.gene056605 | MS.gene61056 | 0.89683 | 2.53E-76 | -1.69E-46 |
| MS.gene05689 | MS.gene61056 | 0.84326 | 1.56E-58 | -1.69E-46 |
| MS.gene059935 | MS.gene61056 | 0.828027 | 1.13E-54 | -1.69E-46 |
| MS.gene060830 | MS.gene61056 | 0.889131 | 3.19E-73 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61056.t1 | MTR_8g065900 | 98.762 | 727 | 9 | 0 | 265 | 991 | 1 | 727 | 0.0 | 1506 |
| MS.gene61056.t1 | MTR_7g017440 | 77.385 | 566 | 127 | 1 | 426 | 991 | 2 | 566 | 0.0 | 922 |
| MS.gene61056.t1 | MTR_8g065960 | 97.287 | 258 | 7 | 0 | 1 | 258 | 1 | 258 | 7.51e-179 | 520 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61056.t1 | AT1G68990 | 63.147 | 1004 | 329 | 12 | 1 | 991 | 1 | 976 | 0.0 | 1306 |
| MS.gene61056.t1 | AT1G68990 | 62.710 | 1011 | 329 | 13 | 1 | 991 | 1 | 983 | 0.0 | 1299 |
| MS.gene61056.t1 | AT5G15700 | 61.886 | 997 | 349 | 10 | 1 | 991 | 40 | 1011 | 0.0 | 1238 |
| MS.gene61056.t1 | AT5G15700 | 61.368 | 994 | 352 | 11 | 1 | 987 | 40 | 1008 | 0.0 | 1222 |
| MS.gene61056.t1 | AT2G24120 | 61.860 | 860 | 301 | 7 | 135 | 991 | 158 | 993 | 0.0 | 1139 |
| MS.gene61056.t1 | AT2G24120 | 59.441 | 752 | 278 | 7 | 135 | 883 | 158 | 885 | 0.0 | 944 |
Find 235 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGAGAGTGAACAAAATT+TGG | 0.151766 | 8.1:-38430893 | None:intergenic |
| ACTTGACTGAAACGCGAAAA+TGG | 0.186625 | 8.1:-38422902 | None:intergenic |
| CAGGGGTGCATGATTCTTAT+TGG | 0.190275 | 8.1:+38431066 | MS.gene61056:intron |
| GGAAGCACGTTTGGCTAATT+TGG | 0.201255 | 8.1:-38422792 | None:intergenic |
| TGAGGCTGCAAGAAGTATTA+TGG | 0.213750 | 8.1:+38430234 | MS.gene61056:CDS |
| TGGTATTGCCAAGGGTATTA+AGG | 0.233566 | 8.1:-38426859 | None:intergenic |
| ACCACCATCTCCAAATTTAT+TGG | 0.240183 | 8.1:-38425682 | None:intergenic |
| GAACCACCAGCCAATAAATT+TGG | 0.255887 | 8.1:+38425672 | MS.gene61056:CDS |
| CAAGCTTTGGGGATAGTTAA+AGG | 0.258733 | 8.1:+38425480 | MS.gene61056:CDS |
| TATATGAAATCATTGTTTCT+TGG | 0.260255 | 8.1:+38423310 | MS.gene61056:CDS |
| GAAAGGGTAGCCTCGGGATT+GGG | 0.281035 | 8.1:-38427870 | None:intergenic |
| TCGGCGTGATAGATCAAATA+TGG | 0.290150 | 8.1:+38426906 | MS.gene61056:CDS |
| ATTCAAGCTGCTTGTCAAAT+AGG | 0.291014 | 8.1:+38423517 | MS.gene61056:CDS |
| ATTTATTGGCTGGTGGTTCT+AGG | 0.303497 | 8.1:-38425668 | None:intergenic |
| CAAGAGAGTGAACAAAATTT+GGG | 0.306701 | 8.1:-38430892 | None:intergenic |
| AGAAACAATGATTTCATATA+AGG | 0.307873 | 8.1:-38423307 | None:intergenic |
| TGTTGGTTCCACCGAATAAC+TGG | 0.311327 | 8.1:+38426309 | MS.gene61056:CDS |
| GCAGAAGAAGCAACAAGCTT+TGG | 0.313784 | 8.1:+38425467 | MS.gene61056:CDS |
| TCTTCTGTGTCTAGTTCCTC+TGG | 0.315797 | 8.1:-38427273 | None:intergenic |
| ACTCTACGAAACTCCGATAT+TGG | 0.319241 | 8.1:+38431145 | MS.gene61056:CDS |
| TGTTGATGACAAATAGTAAT+GGG | 0.320126 | 8.1:+38423476 | MS.gene61056:CDS |
| TCAAGGCCCTTCTGTATCAT+AGG | 0.322000 | 8.1:-38425895 | None:intergenic |
| GAAGAAAGAGCCTCGATTAG+AGG | 0.324239 | 8.1:+38423135 | MS.gene61056:CDS |
| ATGAATCAGAAATTCGAAAA+TGG | 0.329535 | 8.1:+38427295 | MS.gene61056:CDS |
| AGAAGCAGCAAGAGAGTATC+AGG | 0.331278 | 8.1:+38423240 | MS.gene61056:CDS |
| CAGAAGAAGCAACAAGCTTT+GGG | 0.332266 | 8.1:+38425468 | MS.gene61056:CDS |
| CGTTACAGGTCATGGTAAAA+AGG | 0.336398 | 8.1:+38430852 | MS.gene61056:intron |
| GTAATAACAGCCATCATATC+AGG | 0.337951 | 8.1:-38423433 | None:intergenic |
| CTGTCTGCTTTACCAACTTT+CGG | 0.346118 | 8.1:-38429981 | None:intergenic |
| GTTTGCAGAGGGACGTCCTC+TGG | 0.352398 | 8.1:+38427620 | MS.gene61056:CDS |
| TCAGAAATTGTTAGATCAAA+TGG | 0.366741 | 8.1:+38423099 | MS.gene61056:CDS |
| AGTCTCCTCGTTCCGGTAAA+GGG | 0.367091 | 8.1:-38431733 | None:intergenic |
| CCTTCTTGAGGAAGCACGTT+TGG | 0.370723 | 8.1:-38422801 | None:intergenic |
| GGTATTGCCAAGGGTATTAA+GGG | 0.378778 | 8.1:-38426858 | None:intergenic |
| GAGGCTGCAAGAAGTATTAT+GGG | 0.379156 | 8.1:+38430235 | MS.gene61056:CDS |
| TATTACTATGCATAAGTTGA+TGG | 0.379928 | 8.1:+38423450 | MS.gene61056:CDS |
| GATTTCATATAAGGCAAATT+CGG | 0.381464 | 8.1:-38423298 | None:intergenic |
| AGCAACGTGATGCTTTAAAA+TGG | 0.382155 | 8.1:+38426702 | MS.gene61056:CDS |
| TCATACCCTGTCCAGTTATT+CGG | 0.386127 | 8.1:-38426320 | None:intergenic |
| TCTCTTTCTCTTCAGCTGTC+AGG | 0.387181 | 8.1:-38425389 | None:intergenic |
| ATCATTTGAAATTGTCTTGA+GGG | 0.389121 | 8.1:-38425733 | None:intergenic |
| AGCCTCAAACATCTCTTCTA+AGG | 0.392432 | 8.1:-38430218 | None:intergenic |
| GATACAGAAGATGATTGTTC+TGG | 0.393506 | 8.1:+38423061 | MS.gene61056:CDS |
| GAAAGAGAAACTTGCTAAAG+AGG | 0.394136 | 8.1:+38425404 | MS.gene61056:CDS |
| ACAGTGATGACGTCGGTCTA+TGG | 0.394571 | 8.1:+38430000 | MS.gene61056:CDS |
| GGCGGCAATTCATTGAAATA+AGG | 0.399400 | 8.1:-38423412 | None:intergenic |
| CTTTACATCAGAAAACAAAC+TGG | 0.403496 | 8.1:+38422931 | MS.gene61056:CDS |
| AACGCATGTGGATCAGTTGC+AGG | 0.411067 | 8.1:-38429680 | None:intergenic |
| GCTTCTGCAGTCAATCTTGT+TGG | 0.412727 | 8.1:+38428807 | MS.gene61056:CDS |
| GTGCGATGGGTCACTCCCCT+TGG | 0.416735 | 8.1:+38430420 | MS.gene61056:CDS |
| TGCGATGGGTCACTCCCCTT+GGG | 0.416968 | 8.1:+38430421 | MS.gene61056:CDS |
| ACATTAACAGGCCAGGCATA+TGG | 0.418861 | 8.1:+38426268 | MS.gene61056:intron |
| ATAGATCAAATATGGGCTAA+TGG | 0.424781 | 8.1:+38426914 | MS.gene61056:CDS |
| ATAGAGTCAAGTTGATTCTT+CGG | 0.424788 | 8.1:-38426728 | None:intergenic |
| AAGAGATCAGGCGAAACCTT+GGG | 0.429305 | 8.1:+38425503 | MS.gene61056:CDS |
| TCTCAGTGATGTAGAGGATT+GGG | 0.430471 | 8.1:-38422837 | None:intergenic |
| AGATCCAAGTCTCCTCGTTC+CGG | 0.432465 | 8.1:-38431740 | None:intergenic |
| CAAGCAGGGATGAACTTTGC+AGG | 0.433433 | 8.1:+38430953 | MS.gene61056:CDS |
| TCTCGGTAAGGTTGTACAAC+TGG | 0.437051 | 8.1:-38430447 | None:intergenic |
| AAGTCTCCTCGTTCCGGTAA+AGG | 0.443118 | 8.1:-38431734 | None:intergenic |
| CCAGGTGTCTTCCTACTTCT+CGG | 0.446736 | 8.1:-38430464 | None:intergenic |
| CTTGACTGAAACGCGAAAAT+GGG | 0.448216 | 8.1:-38422901 | None:intergenic |
| TAAGGAGCGTTGTGCGGTTG+AGG | 0.450901 | 8.1:+38430065 | MS.gene61056:CDS |
| TGAAATCATTGTTTCTTGGT+TGG | 0.451320 | 8.1:+38423314 | MS.gene61056:CDS |
| TGGAGGTCGCCTGGCTGACC+TGG | 0.453959 | 8.1:+38426934 | MS.gene61056:CDS |
| ATCTCAGTGATGTAGAGGAT+TGG | 0.455612 | 8.1:-38422838 | None:intergenic |
| GGAACCAACATTGGCATGTA+GGG | 0.456617 | 8.1:-38426296 | None:intergenic |
| AGAAAGGGTAGCCTCGGGAT+TGG | 0.457951 | 8.1:-38427871 | None:intergenic |
| AGCAATGGAAGTAGGAGATA+TGG | 0.458963 | 8.1:+38425856 | MS.gene61056:intron |
| GGGTAGGATATACCGATTCA+TGG | 0.460894 | 8.1:+38425290 | MS.gene61056:intron |
| TCGCACTGCTTGGTTTGTGC+AGG | 0.466104 | 8.1:-38430403 | None:intergenic |
| CAAGGCCCTTCTGTATCATA+GGG | 0.466416 | 8.1:-38425894 | None:intergenic |
| ATCCACATGCGTTGCATGCT+AGG | 0.469299 | 8.1:+38429690 | MS.gene61056:CDS |
| GCTTTGTCTTCCCCATGAAT+CGG | 0.469447 | 8.1:-38425302 | None:intergenic |
| CACGATCCACCAGGTCAGCC+AGG | 0.470522 | 8.1:-38426943 | None:intergenic |
| CAGAAATTCGAAAATGGAAG+TGG | 0.473717 | 8.1:+38427301 | MS.gene61056:CDS |
| TCTATGGAGTGACTTACATC+GGG | 0.473769 | 8.1:+38430016 | MS.gene61056:CDS |
| GCAATGGTTGAAAATACATC+TGG | 0.473980 | 8.1:+38427656 | MS.gene61056:CDS |
| ATTACTATGCATAAGTTGAT+GGG | 0.481023 | 8.1:+38423451 | MS.gene61056:CDS |
| GTTACAAGTATAAAATGCTT+AGG | 0.484560 | 8.1:+38423182 | MS.gene61056:CDS |
| TTTACTCAGGAATTGCAGCC+AGG | 0.486150 | 8.1:+38428850 | MS.gene61056:CDS |
| TCTGCAGACAGGCCTCTTGA+AGG | 0.488525 | 8.1:+38427768 | MS.gene61056:CDS |
| CTCTTGAAGGAAAGCGGTGG+TGG | 0.489434 | 8.1:+38427781 | MS.gene61056:CDS |
| TTCTCATATGCCTGTACACC+AGG | 0.489759 | 8.1:+38427890 | MS.gene61056:CDS |
| TTTACCGGAACGAGGAGACT+TGG | 0.490240 | 8.1:+38431736 | MS.gene61056:CDS |
| GGACGTCCTCTGGGGAAGAA+AGG | 0.490556 | 8.1:+38427630 | MS.gene61056:CDS |
| CCATCTCCAAATTTATTGGC+TGG | 0.491099 | 8.1:-38425678 | None:intergenic |
| CCCTCCATTTGGTATTGCCA+AGG | 0.491223 | 8.1:-38426868 | None:intergenic |
| TGTGTCTAGTTCCTCTGGGA+GGG | 0.491372 | 8.1:-38427268 | None:intergenic |
| ATACCCTTGGCAATACCAAA+TGG | 0.492890 | 8.1:+38426864 | MS.gene61056:CDS |
| TGTATTCTCATAACATATGA+TGG | 0.496903 | 8.1:-38426668 | None:intergenic |
| CATGCTGCCAAGCACTGAAA+AGG | 0.497540 | 8.1:-38427819 | None:intergenic |
| ACTTGAGCTTCTTGTCCCCA+AGG | 0.498027 | 8.1:-38425519 | None:intergenic |
| GGTAGGATATACCGATTCAT+GGG | 0.500948 | 8.1:+38425291 | MS.gene61056:CDS |
| GCTGTAGTGTCAATACTTGA+AGG | 0.503590 | 8.1:-38430634 | None:intergenic |
| CTTCTGTGTCTAGTTCCTCT+GGG | 0.504375 | 8.1:-38427272 | None:intergenic |
| AGGAAATGAACAGGATACTC+AGG | 0.504918 | 8.1:+38431108 | MS.gene61056:CDS |
| GAAGAGATCAGGCGAAACCT+TGG | 0.505993 | 8.1:+38425502 | MS.gene61056:CDS |
| CATCCGTATCTGAACCATCT+TGG | 0.506665 | 8.1:+38427570 | MS.gene61056:CDS |
| ATGGGCTAATGGAGGTCGCC+TGG | 0.506947 | 8.1:+38426925 | MS.gene61056:CDS |
| TGTCTTCCTACTTCTCGGTA+AGG | 0.506968 | 8.1:-38430459 | None:intergenic |
| ATTGGCTGGTGGTTCTAGGT+AGG | 0.507239 | 8.1:-38425664 | None:intergenic |
| AGCATTTACTGAGGACCACC+TGG | 0.508340 | 8.1:+38427731 | MS.gene61056:CDS |
| GTGAAAAGTACCTGGTGTAC+AGG | 0.510557 | 8.1:-38427900 | None:intergenic |
| AAAGGGTAGCCTCGGGATTG+GGG | 0.513035 | 8.1:-38427869 | None:intergenic |
| TGCTAGGATGGTTCATGCAA+TGG | 0.513914 | 8.1:+38428323 | MS.gene61056:intron |
| GCACAAACCAAGCAGTGCGA+TGG | 0.515196 | 8.1:+38430406 | MS.gene61056:CDS |
| AAACTATACCTCATGTTCAA+TGG | 0.516109 | 8.1:-38423545 | None:intergenic |
| ACTTGATTAGCAATGGAAGT+AGG | 0.519938 | 8.1:+38425848 | MS.gene61056:intron |
| TTTGCAGAGGGACGTCCTCT+GGG | 0.521577 | 8.1:+38427621 | MS.gene61056:CDS |
| GGTGTACAGGCATATGAGAA+AGG | 0.521786 | 8.1:-38427887 | None:intergenic |
| GATAGTTAAAGGAAGAGATC+AGG | 0.522704 | 8.1:+38425491 | MS.gene61056:CDS |
| TGCCTTAGAAGAGATGTTTG+AGG | 0.523072 | 8.1:+38430216 | MS.gene61056:CDS |
| TCTGCAGTCAATCTTGTTGG+TGG | 0.523291 | 8.1:+38428810 | MS.gene61056:CDS |
| AAGAGAGTATCAGGAATTGT+TGG | 0.526034 | 8.1:+38423249 | MS.gene61056:CDS |
| CCAGATCAAAAGGAGGCTTA+AGG | 0.526268 | 8.1:+38430047 | MS.gene61056:CDS |
| TTGTTGATGACAAATAGTAA+TGG | 0.526517 | 8.1:+38423475 | MS.gene61056:CDS |
| ATTCCTGAGTAAACATCAGC+AGG | 0.527115 | 8.1:-38428840 | None:intergenic |
| GCGACGTTGAGGAAATGAAC+AGG | 0.527386 | 8.1:+38431099 | MS.gene61056:CDS |
| TGCTGATCAAGAGATTTGTA+AGG | 0.527914 | 8.1:+38423363 | MS.gene61056:CDS |
| GGGCCCGAGACCAGATCAAA+AGG | 0.528984 | 8.1:+38430037 | MS.gene61056:CDS |
| CTAAAGAGGAGAAAAGACTT+AGG | 0.530884 | 8.1:+38425418 | MS.gene61056:CDS |
| GCAGTTGCTTGTAAACAAGC+AGG | 0.531102 | 8.1:+38430938 | MS.gene61056:CDS |
| GTAGGTTGCACGAAAGTTGA+AGG | 0.532979 | 8.1:+38427488 | MS.gene61056:intron |
| TGGAACCAACATTGGCATGT+AGG | 0.534779 | 8.1:-38426297 | None:intergenic |
| TATCCCCTACATGCCAATGT+TGG | 0.535161 | 8.1:+38426292 | MS.gene61056:CDS |
| CACCACCGCTTTCCTTCAAG+AGG | 0.537723 | 8.1:-38427780 | None:intergenic |
| CGGCGTGATAGATCAAATAT+GGG | 0.539427 | 8.1:+38426907 | MS.gene61056:CDS |
| GCCAATAAATTTGGAGATGG+TGG | 0.539850 | 8.1:+38425681 | MS.gene61056:CDS |
| TGCTAGGCGTTTGATCAACC+AGG | 0.539952 | 8.1:+38429706 | MS.gene61056:CDS |
| GTAGGGGATAACCATATGCC+TGG | 0.540006 | 8.1:-38426279 | None:intergenic |
| CATATGAGAAAGGGTAGCCT+CGG | 0.540769 | 8.1:-38427877 | None:intergenic |
| TGAATTGCCGCCTGATATGA+TGG | 0.541229 | 8.1:+38423423 | MS.gene61056:CDS |
| TCATATGTTATGAGAATACA+TGG | 0.544260 | 8.1:+38426671 | MS.gene61056:CDS |
| GAGTGACCCATCGCACTGCT+TGG | 0.544553 | 8.1:-38430413 | None:intergenic |
| GTTCCACCGAATAACTGGAC+AGG | 0.546205 | 8.1:+38426314 | MS.gene61056:CDS |
| GCAGCAATTGCATTCTTCAA+AGG | 0.549685 | 8.1:-38423343 | None:intergenic |
| AGAAGTATTATGGGTTGGCT+AGG | 0.551256 | 8.1:+38430244 | MS.gene61056:CDS |
| GTGTCTAGTTCCTCTGGGAG+GGG | 0.555700 | 8.1:-38427267 | None:intergenic |
| AAAGATGGAGACTGAGGCAT+GGG | 0.556184 | 8.1:+38423216 | MS.gene61056:CDS |
| TTATTCGGTGGAACCAACAT+TGG | 0.557827 | 8.1:-38426305 | None:intergenic |
| GTCTATGGAGTGACTTACAT+CGG | 0.558237 | 8.1:+38430015 | MS.gene61056:CDS |
| CCTCCATTTGGTATTGCCAA+GGG | 0.560687 | 8.1:-38426867 | None:intergenic |
| GAACCAAGATGGTTCAGATA+CGG | 0.561356 | 8.1:-38427573 | None:intergenic |
| ACAAGTATAAAATGCTTAGG+AGG | 0.561767 | 8.1:+38423185 | MS.gene61056:CDS |
| CACAAACCAAGCAGTGCGAT+GGG | 0.562671 | 8.1:+38430407 | MS.gene61056:CDS |
| CGCCTAGCATGCAACGCATG+TGG | 0.562848 | 8.1:-38429692 | None:intergenic |
| GTAATGGGGTTGGTAGTGCT+AGG | 0.563661 | 8.1:+38423491 | MS.gene61056:CDS |
| GGGACAAGAAGCTCAAGTAA+AGG | 0.565903 | 8.1:+38425524 | MS.gene61056:CDS |
| GTGTACAGGCATATGAGAAA+GGG | 0.567217 | 8.1:-38427886 | None:intergenic |
| TAGGAGGAGACAGATAAAGA+TGG | 0.570475 | 8.1:+38423201 | MS.gene61056:CDS |
| CTCTTCTAAGGCAGTGAGAG+TGG | 0.571123 | 8.1:-38430206 | None:intergenic |
| CAGCCTGCTGATGTTTACTC+AGG | 0.571369 | 8.1:+38428837 | MS.gene61056:CDS |
| TTGAGGGTATGCTTAAATGC+AGG | 0.572429 | 8.1:-38425717 | None:intergenic |
| TAATGGGGTTGGTAGTGCTA+GGG | 0.572498 | 8.1:+38423492 | MS.gene61056:CDS |
| AATCATTTGAAATTGTCTTG+AGG | 0.574540 | 8.1:-38425734 | None:intergenic |
| TGGTTCAGATACGGATGCAT+AGG | 0.574623 | 8.1:-38427564 | None:intergenic |
| TCTCCAAATTTATTGGCTGG+TGG | 0.576986 | 8.1:-38425675 | None:intergenic |
| CTGCAAGAAGTATTATGGGT+TGG | 0.577075 | 8.1:+38430239 | MS.gene61056:CDS |
| TCAAGTATTGACACTACAGC+GGG | 0.577354 | 8.1:+38430637 | MS.gene61056:CDS |
| ACATTAGGTGGACCGAAAGT+TGG | 0.579207 | 8.1:+38429969 | MS.gene61056:intron |
| CCAAACGTGCTTCCTCAAGA+AGG | 0.579330 | 8.1:+38422801 | MS.gene61056:CDS |
| TTACAACACTATGCAGCACT+TGG | 0.581552 | 8.1:+38428347 | MS.gene61056:CDS |
| AGGTCGCCTGGCTGACCTGG+TGG | 0.582006 | 8.1:+38426937 | MS.gene61056:CDS |
| ATGACAAATAGTAATGGGGT+TGG | 0.583440 | 8.1:+38423481 | MS.gene61056:CDS |
| CTGGCAAATTTGTATGCCAC+TGG | 0.585651 | 8.1:+38427675 | MS.gene61056:CDS |
| CAGAATCGAAAATATCATCC+AGG | 0.587359 | 8.1:-38427749 | None:intergenic |
| GTGGACAAGTTAAGTTATGA+TGG | 0.588242 | 8.1:+38427702 | MS.gene61056:CDS |
| AGAAAATCTCAGTGATGTAG+AGG | 0.588807 | 8.1:-38422843 | None:intergenic |
| ATCACTATCAGACTTGTGAC+TGG | 0.590655 | 8.1:-38425337 | None:intergenic |
| GTCTCCTCGTTCCGGTAAAG+GGG | 0.591775 | 8.1:-38431732 | None:intergenic |
| TAAAGATGGAGACTGAGGCA+TGG | 0.592884 | 8.1:+38423215 | MS.gene61056:CDS |
| GTACAACCTTACCGAGAAGT+AGG | 0.593326 | 8.1:+38430453 | MS.gene61056:CDS |
| AGGTGAAGCCATTGAACATG+AGG | 0.595122 | 8.1:+38423537 | MS.gene61056:CDS |
| GCAAATTTGTATGCCACTGG+TGG | 0.595435 | 8.1:+38427678 | MS.gene61056:CDS |
| CTGTAGTGTCAATACTTGAA+GGG | 0.597211 | 8.1:-38430633 | None:intergenic |
| GACATAGATCAGAACCAAGA+TGG | 0.599029 | 8.1:-38427584 | None:intergenic |
| GACACATGCATGCGACGTTG+AGG | 0.600599 | 8.1:+38431088 | MS.gene61056:CDS |
| CCAGCCAATAAATTTGGAGA+TGG | 0.603082 | 8.1:+38425678 | MS.gene61056:CDS |
| GGCATACTTGAGTTTGCAGA+GGG | 0.604284 | 8.1:+38427609 | MS.gene61056:CDS |
| TTTGTATGCCACTGGTGGTG+TGG | 0.605437 | 8.1:+38427683 | MS.gene61056:CDS |
| ATGCGACCCTATGATACAGA+AGG | 0.607263 | 8.1:+38425888 | MS.gene61056:CDS |
| TGGGGAAGAAAGGCTTGCAA+TGG | 0.609801 | 8.1:+38427640 | MS.gene61056:CDS |
| CTGTGTCTAGTTCCTCTGGG+AGG | 0.610769 | 8.1:-38427269 | None:intergenic |
| TCACATCATCACGATCCACC+AGG | 0.613186 | 8.1:-38426952 | None:intergenic |
| ATATGAGAAAGGGTAGCCTC+GGG | 0.613800 | 8.1:-38427876 | None:intergenic |
| TACCCTGTCCAGTTATTCGG+TGG | 0.619231 | 8.1:-38426317 | None:intergenic |
| CCGAGAAGTAGGAAGACACC+TGG | 0.620898 | 8.1:+38430464 | MS.gene61056:CDS |
| AGAGATCAGGCGAAACCTTG+GGG | 0.621202 | 8.1:+38425504 | MS.gene61056:CDS |
| TGCAAGCCTTTCTTCCCCAG+AGG | 0.622297 | 8.1:-38427636 | None:intergenic |
| CGAAAGTTGAAGGAAGAAGA+CGG | 0.625455 | 8.1:+38427498 | MS.gene61056:CDS |
| CAGTTGCTTGTAAACAAGCA+GGG | 0.625484 | 8.1:+38430939 | MS.gene61056:CDS |
| GCGGTGGTGGTTGCAAGCAG+AGG | 0.625852 | 8.1:+38427794 | MS.gene61056:CDS |
| GTTGTACAACTGGAAGCCCA+AGG | 0.625869 | 8.1:-38430437 | None:intergenic |
| TCTCCTCGTTCCGGTAAAGG+GGG | 0.625906 | 8.1:-38431731 | None:intergenic |
| CTTGGTTCTGATCTATGTCG+AGG | 0.628300 | 8.1:+38427588 | MS.gene61056:CDS |
| TTCAAGTATTGACACTACAG+CGG | 0.629318 | 8.1:+38430636 | MS.gene61056:CDS |
| AGGGTGAACAAAAGTGTACT+CGG | 0.632028 | 8.1:+38426887 | MS.gene61056:CDS |
| AGATAAGATCGACCTTCTTG+AGG | 0.633851 | 8.1:-38422813 | None:intergenic |
| TTGTACAACTGGAAGCCCAA+GGG | 0.635369 | 8.1:-38430436 | None:intergenic |
| GTTGATGACAAATAGTAATG+GGG | 0.637161 | 8.1:+38423477 | MS.gene61056:CDS |
| GGAAATGAACAGGATACTCA+GGG | 0.637226 | 8.1:+38431109 | MS.gene61056:CDS |
| AAGAGAGTGAACAAAATTTG+GGG | 0.638223 | 8.1:-38430891 | None:intergenic |
| CCCTTGGCAATACCAAATGG+AGG | 0.638786 | 8.1:+38426867 | MS.gene61056:CDS |
| ACAGATAAAGATGGAGACTG+AGG | 0.643788 | 8.1:+38423210 | MS.gene61056:CDS |
| TAACTTGTCCACACCACCAG+TGG | 0.644335 | 8.1:-38427691 | None:intergenic |
| AGGCATACTTGAGTTTGCAG+AGG | 0.652217 | 8.1:+38427608 | MS.gene61056:CDS |
| ACAGGCCTCTTGAAGGAAAG+CGG | 0.655733 | 8.1:+38427775 | MS.gene61056:CDS |
| GAACCAACATTGGCATGTAG+GGG | 0.657717 | 8.1:-38426295 | None:intergenic |
| GAGGCTTAAGGAGCGTTGTG+CGG | 0.659755 | 8.1:+38430059 | MS.gene61056:CDS |
| TGCGACCCTATGATACAGAA+GGG | 0.660790 | 8.1:+38425889 | MS.gene61056:CDS |
| TTCCACCGAATAACTGGACA+GGG | 0.660914 | 8.1:+38426315 | MS.gene61056:CDS |
| CCTCGAAAATCAAGATTGTG+AGG | 0.661093 | 8.1:-38427531 | None:intergenic |
| ACTACAGCGGGAGACTGACA+AGG | 0.666691 | 8.1:+38430649 | MS.gene61056:CDS |
| CCTTGGCAATACCAAATGGA+GGG | 0.668903 | 8.1:+38426868 | MS.gene61056:CDS |
| TTGCAGAGGGACGTCCTCTG+GGG | 0.669672 | 8.1:+38427622 | MS.gene61056:CDS |
| ATTGAGAAGCCCCAATCCCG+AGG | 0.674430 | 8.1:+38427860 | MS.gene61056:CDS |
| GATCAAATATGGGCTAATGG+AGG | 0.675104 | 8.1:+38426917 | MS.gene61056:CDS |
| CCCGAGACCAGATCAAAAGG+AGG | 0.677771 | 8.1:+38430040 | MS.gene61056:CDS |
| GGCCTCTTGAAGGAAAGCGG+TGG | 0.677977 | 8.1:+38427778 | MS.gene61056:CDS |
| TGTACAACTGGAAGCCCAAG+GGG | 0.678513 | 8.1:-38430435 | None:intergenic |
| TTCAGCAGCAACACTGCCGT+AGG | 0.685959 | 8.1:-38423023 | None:intergenic |
| TTGGCTAGGTGATTGTGCAA+AGG | 0.687857 | 8.1:+38430258 | MS.gene61056:CDS |
| AGAAGAAGCAACAAGCTTTG+GGG | 0.689200 | 8.1:+38425469 | MS.gene61056:CDS |
| TGCAGCACTTGGTAGAGACA+AGG | 0.691164 | 8.1:+38428358 | MS.gene61056:CDS |
| TTTACATCAGAAAACAAACT+GGG | 0.692758 | 8.1:+38422932 | MS.gene61056:CDS |
| AGAGAGTGAACAAAATTTGG+GGG | 0.694041 | 8.1:-38430890 | None:intergenic |
| GTAGGATATACCGATTCATG+GGG | 0.696659 | 8.1:+38425292 | MS.gene61056:CDS |
| ATAACAGCCATCATATCAGG+CGG | 0.700907 | 8.1:-38423430 | None:intergenic |
| TCTAAAGCTTCCCCTCCCAG+AGG | 0.724335 | 8.1:+38427257 | MS.gene61056:intron |
| AATCGAAAATATCATCCAGG+TGG | 0.728884 | 8.1:-38427746 | None:intergenic |
| CTATGGAGTGACTTACATCG+GGG | 0.740334 | 8.1:+38430017 | MS.gene61056:CDS |
| TTTGTAAGGATACTAAGACG+AGG | 0.751823 | 8.1:+38423377 | MS.gene61056:CDS |
| TGGTCGAGTAGCATTTACTG+AGG | 0.753375 | 8.1:+38427722 | MS.gene61056:CDS |
| AAAGCAGACAGTGATGACGT+CGG | 0.756304 | 8.1:+38429993 | MS.gene61056:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 38422785 | 38431799 | 38422785 | ID=MS.gene61056 |
| chr8.1 | mRNA | 38422785 | 38431799 | 38422785 | ID=MS.gene61056.t1;Parent=MS.gene61056 |
| chr8.1 | exon | 38422785 | 38423558 | 38422785 | ID=MS.gene61056.t1.exon1;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38422785 | 38423558 | 38422785 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38425291 | 38425545 | 38425291 | ID=MS.gene61056.t1.exon2;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38425291 | 38425545 | 38425291 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38425627 | 38425760 | 38425627 | ID=MS.gene61056.t1.exon3;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38425627 | 38425760 | 38425627 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38425858 | 38425924 | 38425858 | ID=MS.gene61056.t1.exon4;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38425858 | 38425924 | 38425858 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38426278 | 38426336 | 38426278 | ID=MS.gene61056.t1.exon5;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38426278 | 38426336 | 38426278 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38426640 | 38426757 | 38426640 | ID=MS.gene61056.t1.exon6;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38426640 | 38426757 | 38426640 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38426857 | 38426970 | 38426857 | ID=MS.gene61056.t1.exon7;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38426857 | 38426970 | 38426857 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38427264 | 38427395 | 38427264 | ID=MS.gene61056.t1.exon8;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38427264 | 38427395 | 38427264 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38427492 | 38427911 | 38427492 | ID=MS.gene61056.t1.exon9;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38427492 | 38427911 | 38427492 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38428329 | 38428379 | 38428329 | ID=MS.gene61056.t1.exon10;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38428329 | 38428379 | 38428329 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38428801 | 38428871 | 38428801 | ID=MS.gene61056.t1.exon11;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38428801 | 38428871 | 38428801 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38429643 | 38429727 | 38429643 | ID=MS.gene61056.t1.exon12;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38429643 | 38429727 | 38429643 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38429976 | 38430128 | 38429976 | ID=MS.gene61056.t1.exon13;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38429976 | 38430128 | 38429976 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38430205 | 38430279 | 38430205 | ID=MS.gene61056.t1.exon14;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38430205 | 38430279 | 38430205 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38430396 | 38430485 | 38430396 | ID=MS.gene61056.t1.exon15;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38430396 | 38430485 | 38430396 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38430623 | 38430670 | 38430623 | ID=MS.gene61056.t1.exon16;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38430623 | 38430670 | 38430623 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38430860 | 38430974 | 38430860 | ID=MS.gene61056.t1.exon17;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38430860 | 38430974 | 38430860 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38431069 | 38431172 | 38431069 | ID=MS.gene61056.t1.exon18;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38431069 | 38431172 | 38431069 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| chr8.1 | exon | 38431689 | 38431799 | 38431689 | ID=MS.gene61056.t1.exon19;Parent=MS.gene61056.t1 |
| chr8.1 | CDS | 38431689 | 38431799 | 38431689 | ID=cds.MS.gene61056.t1;Parent=MS.gene61056.t1 |
| Gene Sequence |
| Protein sequence |
