Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61069.t1 | RHN63526.1 | 87 | 491 | 24 | 3 | 9 | 495 | 1 | 455 | 5.80E-239 | 836.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61069.t1 | Q6GNS3 | 44.7 | 468 | 242 | 9 | 38 | 495 | 13 | 473 | 1.4e-108 | 394.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61069.t1 | A0A396ID67 | 87.0 | 491 | 24 | 3 | 9 | 495 | 1 | 455 | 4.2e-239 | 836.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene61069 | MS.gene54064 | PPI |
| MS.gene015887 | MS.gene61069 | PPI |
| MS.gene61069 | MS.gene86289 | PPI |
| MS.gene021568 | MS.gene61069 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61069.t1 | MTR_4g107030 | 85.138 | 471 | 20 | 3 | 18 | 484 | 1 | 425 | 0.0 | 811 |
| MS.gene61069.t1 | MTR_3g064880 | 72.674 | 516 | 92 | 6 | 24 | 495 | 1 | 511 | 0.0 | 734 |
| MS.gene61069.t1 | MTR_5g091890 | 54.762 | 462 | 191 | 6 | 36 | 489 | 14 | 465 | 4.78e-166 | 478 |
| MS.gene61069.t1 | MTR_5g089690 | 39.297 | 313 | 155 | 9 | 181 | 471 | 5 | 304 | 6.40e-51 | 177 |
| MS.gene61069.t1 | MTR_5g091160 | 38.462 | 312 | 158 | 7 | 181 | 471 | 5 | 303 | 6.87e-50 | 174 |
| MS.gene61069.t1 | MTR_5g090460 | 39.731 | 297 | 151 | 11 | 182 | 471 | 16 | 291 | 6.02e-47 | 166 |
| MS.gene61069.t1 | MTR_5g008620 | 38.585 | 311 | 142 | 10 | 181 | 471 | 5 | 286 | 3.05e-46 | 164 |
| MS.gene61069.t1 | MTR_5g006990 | 37.188 | 320 | 143 | 9 | 181 | 471 | 5 | 295 | 2.91e-45 | 161 |
| MS.gene61069.t1 | MTR_5g011470 | 35.604 | 323 | 152 | 10 | 181 | 468 | 5 | 306 | 6.52e-42 | 153 |
| MS.gene61069.t1 | MTR_5g011640 | 35.604 | 323 | 152 | 10 | 181 | 468 | 5 | 306 | 6.86e-42 | 153 |
| MS.gene61069.t1 | MTR_5g092540 | 46.703 | 182 | 81 | 3 | 267 | 434 | 8 | 187 | 4.88e-39 | 142 |
| MS.gene61069.t1 | MTR_5g091490 | 38.889 | 270 | 119 | 8 | 183 | 434 | 9 | 250 | 5.20e-39 | 144 |
| MS.gene61069.t1 | MTR_5g090030 | 44.059 | 202 | 102 | 4 | 267 | 468 | 45 | 235 | 5.91e-37 | 137 |
| MS.gene61069.t1 | MTR_8g442440 | 60.345 | 58 | 23 | 0 | 266 | 323 | 12 | 69 | 5.13e-16 | 73.6 |
| MS.gene61069.t1 | MTR_4g069000 | 35.542 | 166 | 80 | 5 | 329 | 471 | 31 | 192 | 9.31e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61069.t1 | AT2G03820 | 58.664 | 479 | 168 | 10 | 27 | 488 | 6 | 471 | 0.0 | 560 |
Find 108 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATCAACTCCTCCAATTC+AGG | 0.234477 | 8.4:+20559965 | None:intergenic |
| GGAACGTGATCAATTCTTAA+AGG | 0.234838 | 8.4:-20559990 | MS.gene61069:CDS |
| TACATAGCTTTGGGAAATAT+TGG | 0.252016 | 8.4:-20560502 | MS.gene61069:CDS |
| TGCTCAAGTTGCTCGAGTTT+TGG | 0.255945 | 8.4:-20560254 | MS.gene61069:CDS |
| TGGTAAATGCAGAATTTATT+TGG | 0.256762 | 8.4:-20561005 | MS.gene61069:CDS |
| CTTACCATGTCAGGTTTATC+AGG | 0.270325 | 8.4:-20561324 | MS.gene61069:CDS |
| CCCAAAGCTATGTAAGCTTT+AGG | 0.296946 | 8.4:+20560511 | None:intergenic |
| TTATCATTACAACTCTTAAT+AGG | 0.303593 | 8.4:+20560637 | None:intergenic |
| TTCTCTATACTTTCTCTCAA+TGG | 0.309577 | 8.4:-20561364 | MS.gene61069:CDS |
| TTCTTTATTAAAATCACTTC+AGG | 0.335878 | 8.4:+20560091 | None:intergenic |
| TCCTAAAGCTTACATAGCTT+TGG | 0.338275 | 8.4:-20560512 | MS.gene61069:CDS |
| GTTCAGAAGGAGGTTTATAA+TGG | 0.347373 | 8.4:-20560943 | MS.gene61069:CDS |
| TCTCTATACTTTCTCTCAAT+GGG | 0.352882 | 8.4:-20561363 | MS.gene61069:CDS |
| ATTCTTAAAGGACCCTGAAT+TGG | 0.356998 | 8.4:-20559978 | MS.gene61069:CDS |
| AATTAAATCCTCGCGACAAA+TGG | 0.363763 | 8.4:+20560543 | None:intergenic |
| TTGGTGGCTGCAAGTAGCTT+TGG | 0.363793 | 8.4:+20561121 | None:intergenic |
| CAGACACTTCAGACACATAT+TGG | 0.363886 | 8.4:+20561209 | None:intergenic |
| CTCTTGGTTATGACCTGTAT+AGG | 0.365703 | 8.4:-20560159 | MS.gene61069:CDS |
| ACTTACTAGCAGAGAGTTAG+TGG | 0.368478 | 8.4:-20560365 | MS.gene61069:CDS |
| TGTAGTCTGACCCAAGTTCT+TGG | 0.374228 | 8.4:+20561102 | None:intergenic |
| TTTATCTCCCTTACCATGTC+AGG | 0.377835 | 8.4:-20561333 | MS.gene61069:CDS |
| TGGTCCATCTGAGATTACTA+TGG | 0.385953 | 8.4:-20560302 | MS.gene61069:CDS |
| TCCTATGGAGATTGATGATA+AGG | 0.388205 | 8.4:-20560032 | MS.gene61069:CDS |
| CCTAAAGCTTACATAGCTTT+GGG | 0.388692 | 8.4:-20560511 | MS.gene61069:CDS |
| TGAATCCCTTGATCTGTTTG+AGG | 0.388839 | 8.4:-20559936 | MS.gene61069:CDS |
| GATGTGGGAAGCCTCGTTCT+TGG | 0.390234 | 8.4:-20560063 | MS.gene61069:CDS |
| CCTTGTTGAGTACGTTCAAC+AGG | 0.393536 | 8.4:-20560899 | MS.gene61069:CDS |
| ATTAAATCCTCGCGACAAAT+GGG | 0.395990 | 8.4:+20560544 | None:intergenic |
| CCCTGAATTGGAGGAGTTGA+TGG | 0.406602 | 8.4:-20559966 | MS.gene61069:CDS |
| AGACACATATTGGTTGTGTT+TGG | 0.408070 | 8.4:+20561219 | None:intergenic |
| TTCTTGGAAATCACTTCCTA+TGG | 0.410620 | 8.4:-20560047 | MS.gene61069:CDS |
| ACAACTGCAACCCACTGATC+AGG | 0.417342 | 8.4:+20560838 | None:intergenic |
| ATCTAAGAAACTGTACTTCA+AGG | 0.423477 | 8.4:+20560423 | None:intergenic |
| ACTTGCAGCCACCAAGAACT+TGG | 0.424057 | 8.4:-20561113 | MS.gene61069:CDS |
| TCTTGGTTATGACCTGTATA+GGG | 0.432161 | 8.4:-20560158 | MS.gene61069:CDS |
| TTCACAGTTTATCAAACAAT+CGG | 0.439106 | 8.4:-20561279 | MS.gene61069:CDS |
| CTTCATCCTCAAACAGATCA+AGG | 0.439568 | 8.4:+20559930 | None:intergenic |
| GGAATATATAGTGTTGGATC+TGG | 0.443227 | 8.4:-20560344 | MS.gene61069:CDS |
| GCTAGTAAGTAAGGATTTGA+AGG | 0.443338 | 8.4:+20560378 | None:intergenic |
| TCTTAGATGCTGATCAGTAT+TGG | 0.445513 | 8.4:-20560408 | MS.gene61069:CDS |
| TAACTCTCTGCTAGTAAGTA+AGG | 0.447479 | 8.4:+20560369 | None:intergenic |
| CTGATAAACCTGACATGGTA+AGG | 0.453285 | 8.4:+20561325 | None:intergenic |
| ACATGTGTGAATCATGTTCC+AGG | 0.458655 | 8.4:-20560873 | MS.gene61069:CDS |
| AAGCCTGGTGACCATGCTCT+TGG | 0.462066 | 8.4:-20560175 | MS.gene61069:CDS |
| AGCTGTCAGAATCAAACAAA+TGG | 0.463377 | 8.4:-20560734 | MS.gene61069:CDS |
| CTTAAAGGACCCTGAATTGG+AGG | 0.464001 | 8.4:-20559975 | MS.gene61069:CDS |
| CTGCAAGTAGCTTTGGCACA+CGG | 0.464118 | 8.4:+20561128 | None:intergenic |
| TGAAGATGAGGAGGATAACA+TGG | 0.467885 | 8.4:-20559912 | MS.gene61069:CDS |
| CATTACTGTTAGCCCTATAC+AGG | 0.490027 | 8.4:+20560146 | None:intergenic |
| AAACTGTACTTCAAGGTAAG+TGG | 0.497823 | 8.4:+20560430 | None:intergenic |
| GGGTTGCAGTTGTGCAACTC+AGG | 0.502047 | 8.4:-20560828 | MS.gene61069:CDS |
| CCATCAACTCCTCCAATTCA+GGG | 0.502743 | 8.4:+20559966 | None:intergenic |
| ACCTTGGTGCAAATCACAAT+AGG | 0.504166 | 8.4:+20560478 | None:intergenic |
| TAATAAAGAAGAAGAGATGT+GGG | 0.504765 | 8.4:-20560078 | MS.gene61069:CDS |
| TGCAAGTAGCTTTGGCACAC+GGG | 0.512112 | 8.4:+20561129 | None:intergenic |
| AGAATCAAACAAATGGATCA+TGG | 0.514811 | 8.4:-20560727 | MS.gene61069:CDS |
| TGAATCATGTTCCAGGGTGC+AGG | 0.515850 | 8.4:-20560866 | MS.gene61069:CDS |
| AGCAATGCTGTTAGTAACCT+TGG | 0.515955 | 8.4:+20560462 | None:intergenic |
| GAATTGGAGGAGTTGATGGC+TGG | 0.520156 | 8.4:-20559962 | MS.gene61069:CDS |
| GAGGCTGTTTCATCTAAAGT+TGG | 0.520425 | 8.4:-20560322 | MS.gene61069:CDS |
| AGTCAAAGTCAGTGTTCAGA+AGG | 0.524406 | 8.4:-20560956 | MS.gene61069:CDS |
| CAAAGTCAGTGTTCAGAAGG+AGG | 0.524866 | 8.4:-20560953 | MS.gene61069:CDS |
| TAACCAAGAGCATGGTCACC+AGG | 0.533294 | 8.4:+20560172 | None:intergenic |
| GAATGTCAATAAAGTGATGC+TGG | 0.539343 | 8.4:-20561025 | MS.gene61069:CDS |
| ATGGAGATTGATGATAAGGT+TGG | 0.544248 | 8.4:-20560028 | MS.gene61069:CDS |
| ATTAGAAACAAAGGAGCTGT+TGG | 0.544271 | 8.4:-20561079 | MS.gene61069:CDS |
| AAATGCAGAATTTATTTGGA+CGG | 0.551243 | 8.4:-20561001 | MS.gene61069:CDS |
| GCAGGCTAACCCTGATCAGT+GGG | 0.552421 | 8.4:-20560848 | MS.gene61069:CDS |
| GTTAGTGGAATATATAGTGT+TGG | 0.553313 | 8.4:-20560350 | MS.gene61069:CDS |
| CATGTCAGGTTTATCAGGCA+TGG | 0.555533 | 8.4:-20561319 | MS.gene61069:CDS |
| TAGATGCTGATCAGTATTGG+AGG | 0.561272 | 8.4:-20560405 | MS.gene61069:CDS |
| GGTTGGAGTTGATTACAACT+TGG | 0.561543 | 8.4:-20560011 | MS.gene61069:CDS |
| TCCTATTGTGATTTGCACCA+AGG | 0.561646 | 8.4:-20560479 | MS.gene61069:CDS |
| TTAATAAAGAAGAAGAGATG+TGG | 0.569687 | 8.4:-20560079 | MS.gene61069:CDS |
| ACTCAACAAGGTAAGACTGT+TGG | 0.572997 | 8.4:+20560911 | None:intergenic |
| CCTGTTGAACGTACTCAACA+AGG | 0.574739 | 8.4:+20560899 | None:intergenic |
| CGGGGCAATGCACGAGCACG+TGG | 0.577187 | 8.4:+20561148 | None:intergenic |
| CAACTGCAACCCACTGATCA+GGG | 0.578615 | 8.4:+20560839 | None:intergenic |
| TGCAGGCTAACCCTGATCAG+TGG | 0.581561 | 8.4:-20560849 | MS.gene61069:CDS |
| GGTCCATCTGAGATTACTAT+GGG | 0.584432 | 8.4:-20560301 | MS.gene61069:CDS |
| TATTTCTCTAAACGAAGTGA+TGG | 0.585862 | 8.4:-20560694 | MS.gene61069:CDS |
| GCAGAAGTTGATATTACAGA+AGG | 0.588364 | 8.4:-20561183 | MS.gene61069:CDS |
| CCACCCATAGTAATCTCAGA+TGG | 0.590820 | 8.4:+20560298 | None:intergenic |
| CTTGCAGCCACCAAGAACTT+GGG | 0.603687 | 8.4:-20561112 | MS.gene61069:CDS |
| AGTCTGACCCAAGTTCTTGG+TGG | 0.606646 | 8.4:+20561105 | None:intergenic |
| TCAGGCAACATGTCTCTCAC+AGG | 0.606692 | 8.4:-20560810 | MS.gene61069:CDS |
| TTCATCCTCAAACAGATCAA+GGG | 0.607113 | 8.4:+20559931 | None:intergenic |
| TCTGTTTGAGGATGAAGATG+AGG | 0.610516 | 8.4:-20559924 | MS.gene61069:CDS |
| GTTTGAGGATGAAGATGAGG+AGG | 0.612046 | 8.4:-20559921 | MS.gene61069:CDS |
| TGATAAACCTGACATGGTAA+GGG | 0.612745 | 8.4:+20561326 | None:intergenic |
| TTTCTATTAGAACTCATTTG+GGG | 0.613658 | 8.4:-20560207 | MS.gene61069:CDS |
| CAGACTACAATTAGAAACAA+AGG | 0.614245 | 8.4:-20561088 | MS.gene61069:CDS |
| GCAAGTAGCTTTGGCACACG+GGG | 0.617238 | 8.4:+20561130 | None:intergenic |
| TTAAATCCTCGCGACAAATG+GGG | 0.624671 | 8.4:+20560545 | None:intergenic |
| ACCTTATCATCAATCTCCAT+AGG | 0.628583 | 8.4:+20560031 | None:intergenic |
| GACGGAGCCCCATTCCAAGA+GGG | 0.629548 | 8.4:-20560983 | MS.gene61069:CDS |
| GAGCAGCTAATTCTGAAGCA+TGG | 0.629749 | 8.4:-20560769 | MS.gene61069:CDS |
| CCATCTGAGATTACTATGGG+TGG | 0.634830 | 8.4:-20560298 | MS.gene61069:CDS |
| CATGCCTGATAAACCTGACA+TGG | 0.635117 | 8.4:+20561320 | None:intergenic |
| ACAGGTCATAACCAAGAGCA+TGG | 0.640269 | 8.4:+20560164 | None:intergenic |
| AATCAGCCCCATTTGTCGCG+AGG | 0.643382 | 8.4:-20560551 | MS.gene61069:CDS |
| ATATATAGTGTTGGATCTGG+AGG | 0.644394 | 8.4:-20560341 | MS.gene61069:CDS |
| AGATGCTGATCAGTATTGGA+GGG | 0.645940 | 8.4:-20560404 | MS.gene61069:CDS |
| ATCAGGGTTAGCCTGCACCC+TGG | 0.646953 | 8.4:+20560855 | None:intergenic |
| GGAAGTGATTTCCAAGAACG+AGG | 0.668709 | 8.4:+20560052 | None:intergenic |
| GCTGAATATGACAAGTACAA+AGG | 0.669807 | 8.4:-20560121 | MS.gene61069:CDS |
| GGACGGAGCCCCATTCCAAG+AGG | 0.670484 | 8.4:-20560984 | MS.gene61069:CDS |
| CATGTGTGAATCATGTTCCA+GGG | 0.675490 | 8.4:-20560872 | MS.gene61069:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCATTACAACTCTTAAT+AGG | + | chr8.4:20560639-20560658 | None:intergenic | 20.0% |
| !! | TTCTTTATTAAAATCACTTC+AGG | + | chr8.4:20561185-20561204 | None:intergenic | 20.0% |
| !!! | AACAACTTTTTGGAATTTAT+TGG | - | chr8.4:20560603-20560622 | MS.gene61069:CDS | 20.0% |
| !!! | TTTTCTATTAGAACTCATTT+GGG | - | chr8.4:20561065-20561084 | MS.gene61069:CDS | 20.0% |
| ! | AAATGCAGAATTTATTTGGA+CGG | - | chr8.4:20560272-20560291 | MS.gene61069:CDS | 25.0% |
| ! | TAATAAAGAAGAAGAGATGT+GGG | - | chr8.4:20561195-20561214 | MS.gene61069:CDS | 25.0% |
| ! | TGGTAAATGCAGAATTTATT+TGG | - | chr8.4:20560268-20560287 | MS.gene61069:CDS | 25.0% |
| ! | TTAATAAAGAAGAAGAGATG+TGG | - | chr8.4:20561194-20561213 | MS.gene61069:CDS | 25.0% |
| ! | TTCACAGTTTATCAAACAAT+CGG | - | chr8.4:20559994-20560013 | MS.gene61069:CDS | 25.0% |
| ! | TTTCTATTAGAACTCATTTG+GGG | - | chr8.4:20561066-20561085 | MS.gene61069:CDS | 25.0% |
| !! | CTTTTCTATTAGAACTCATT+TGG | - | chr8.4:20561064-20561083 | MS.gene61069:CDS | 25.0% |
| AGAATCAAACAAATGGATCA+TGG | - | chr8.4:20560546-20560565 | MS.gene61069:CDS | 30.0% | |
| ATCTAAGAAACTGTACTTCA+AGG | + | chr8.4:20560853-20560872 | None:intergenic | 30.0% | |
| CAGACTACAATTAGAAACAA+AGG | - | chr8.4:20560185-20560204 | MS.gene61069:CDS | 30.0% | |
| GTTAGTGGAATATATAGTGT+TGG | - | chr8.4:20560923-20560942 | MS.gene61069:CDS | 30.0% | |
| TATTTCTCTAAACGAAGTGA+TGG | - | chr8.4:20560579-20560598 | MS.gene61069:CDS | 30.0% | |
| TCTCTATACTTTCTCTCAAT+GGG | - | chr8.4:20559910-20559929 | MS.gene61069:CDS | 30.0% | |
| TTCTCTATACTTTCTCTCAA+TGG | - | chr8.4:20559909-20559928 | MS.gene61069:CDS | 30.0% | |
| ! | AAGTGATGGTAACAACTTTT+TGG | - | chr8.4:20560593-20560612 | MS.gene61069:CDS | 30.0% |
| !! | TACATAGCTTTGGGAAATAT+TGG | - | chr8.4:20560771-20560790 | MS.gene61069:CDS | 30.0% |
| AAACTGTACTTCAAGGTAAG+TGG | + | chr8.4:20560846-20560865 | None:intergenic | 35.0% | |
| AATTAAATCCTCGCGACAAA+TGG | + | chr8.4:20560733-20560752 | None:intergenic | 35.0% | |
| ACCTTATCATCAATCTCCAT+AGG | + | chr8.4:20561245-20561264 | None:intergenic | 35.0% | |
| AGCTGTCAGAATCAAACAAA+TGG | - | chr8.4:20560539-20560558 | MS.gene61069:CDS | 35.0% | |
| ATTAAATCCTCGCGACAAAT+GGG | + | chr8.4:20560732-20560751 | None:intergenic | 35.0% | |
| ATTAGAAACAAAGGAGCTGT+TGG | - | chr8.4:20560194-20560213 | MS.gene61069:CDS | 35.0% | |
| ATTCTTAAAGGACCCTGAAT+TGG | - | chr8.4:20561295-20561314 | MS.gene61069:CDS | 35.0% | |
| CCTAAAGCTTACATAGCTTT+GGG | - | chr8.4:20560762-20560781 | MS.gene61069:CDS | 35.0% | |
| GAATGTCAATAAAGTGATGC+TGG | - | chr8.4:20560248-20560267 | MS.gene61069:CDS | 35.0% | |
| GCTAGTAAGTAAGGATTTGA+AGG | + | chr8.4:20560898-20560917 | None:intergenic | 35.0% | |
| GCTGAATATGACAAGTACAA+AGG | - | chr8.4:20561152-20561171 | MS.gene61069:CDS | 35.0% | |
| GGAACGTGATCAATTCTTAA+AGG | - | chr8.4:20561283-20561302 | MS.gene61069:CDS | 35.0% | |
| GTTCAGAAGGAGGTTTATAA+TGG | - | chr8.4:20560330-20560349 | MS.gene61069:CDS | 35.0% | |
| TAACTCTCTGCTAGTAAGTA+AGG | + | chr8.4:20560907-20560926 | None:intergenic | 35.0% | |
| TCCTAAAGCTTACATAGCTT+TGG | - | chr8.4:20560761-20560780 | MS.gene61069:CDS | 35.0% | |
| TCTTAGATGCTGATCAGTAT+TGG | - | chr8.4:20560865-20560884 | MS.gene61069:CDS | 35.0% | |
| TCTTGGTTATGACCTGTATA+GGG | - | chr8.4:20561115-20561134 | MS.gene61069:CDS | 35.0% | |
| TGATAAACCTGACATGGTAA+GGG | + | chr8.4:20559950-20559969 | None:intergenic | 35.0% | |
| TTCATCCTCAAACAGATCAA+GGG | + | chr8.4:20561345-20561364 | None:intergenic | 35.0% | |
| TTCTTGGAAATCACTTCCTA+TGG | - | chr8.4:20561226-20561245 | MS.gene61069:CDS | 35.0% | |
| ! | AGACACATATTGGTTGTGTT+TGG | + | chr8.4:20560057-20560076 | None:intergenic | 35.0% |
| ! | ATATATAGTGTTGGATCTGG+AGG | - | chr8.4:20560932-20560951 | MS.gene61069:CDS | 35.0% |
| ! | ATGGAGATTGATGATAAGGT+TGG | - | chr8.4:20561245-20561264 | MS.gene61069:CDS | 35.0% |
| ! | CAGGCGTACTTTCTTTTATT+TGG | - | chr8.4:20560482-20560501 | MS.gene61069:CDS | 35.0% |
| ! | GGAATATATAGTGTTGGATC+TGG | - | chr8.4:20560929-20560948 | MS.gene61069:CDS | 35.0% |
| ! | TCCTATGGAGATTGATGATA+AGG | - | chr8.4:20561241-20561260 | MS.gene61069:CDS | 35.0% |
| !! | GCAGAAGTTGATATTACAGA+AGG | - | chr8.4:20560090-20560109 | MS.gene61069:CDS | 35.0% |
| ACATGTGTGAATCATGTTCC+AGG | - | chr8.4:20560400-20560419 | MS.gene61069:CDS | 40.0% | |
| ACTCAACAAGGTAAGACTGT+TGG | + | chr8.4:20560365-20560384 | None:intergenic | 40.0% | |
| ACTTACTAGCAGAGAGTTAG+TGG | - | chr8.4:20560908-20560927 | MS.gene61069:CDS | 40.0% | |
| AGCAATGCTGTTAGTAACCT+TGG | + | chr8.4:20560814-20560833 | None:intergenic | 40.0% | |
| AGTCAAAGTCAGTGTTCAGA+AGG | - | chr8.4:20560317-20560336 | MS.gene61069:CDS | 40.0% | |
| CAGACACTTCAGACACATAT+TGG | + | chr8.4:20560067-20560086 | None:intergenic | 40.0% | |
| CATGTGTGAATCATGTTCCA+GGG | - | chr8.4:20560401-20560420 | MS.gene61069:CDS | 40.0% | |
| CATTACTGTTAGCCCTATAC+AGG | + | chr8.4:20561130-20561149 | None:intergenic | 40.0% | |
| CCCAAAGCTATGTAAGCTTT+AGG | + | chr8.4:20560765-20560784 | None:intergenic | 40.0% | |
| CTCTTGGTTATGACCTGTAT+AGG | - | chr8.4:20561114-20561133 | MS.gene61069:CDS | 40.0% | |
| CTGATAAACCTGACATGGTA+AGG | + | chr8.4:20559951-20559970 | None:intergenic | 40.0% | |
| CTTACCATGTCAGGTTTATC+AGG | - | chr8.4:20559949-20559968 | MS.gene61069:CDS | 40.0% | |
| CTTCATCCTCAAACAGATCA+AGG | + | chr8.4:20561346-20561365 | None:intergenic | 40.0% | |
| TCTGTTTGAGGATGAAGATG+AGG | - | chr8.4:20561349-20561368 | MS.gene61069:CDS | 40.0% | |
| TGAAGATGAGGAGGATAACA+TGG | - | chr8.4:20561361-20561380 | MS.gene61069:CDS | 40.0% | |
| TGAATCCCTTGATCTGTTTG+AGG | - | chr8.4:20561337-20561356 | MS.gene61069:CDS | 40.0% | |
| TTAAATCCTCGCGACAAATG+GGG | + | chr8.4:20560731-20560750 | None:intergenic | 40.0% | |
| TTTATCTCCCTTACCATGTC+AGG | - | chr8.4:20559940-20559959 | MS.gene61069:CDS | 40.0% | |
| ! | AACGTTTTGTGCTGCAAATG+TGG | - | chr8.4:20560018-20560037 | MS.gene61069:CDS | 40.0% |
| ! | ACCTTGGTGCAAATCACAAT+AGG | + | chr8.4:20560798-20560817 | None:intergenic | 40.0% |
| ! | ACGTTTTGTGCTGCAAATGT+GGG | - | chr8.4:20560019-20560038 | MS.gene61069:CDS | 40.0% |
| ! | ACTTTTACCCTCTTGGAATG+GGG | + | chr8.4:20560300-20560319 | None:intergenic | 40.0% |
| ! | AGATGCTGATCAGTATTGGA+GGG | - | chr8.4:20560869-20560888 | MS.gene61069:CDS | 40.0% |
| ! | GACTTTTACCCTCTTGGAAT+GGG | + | chr8.4:20560301-20560320 | None:intergenic | 40.0% |
| ! | GAGGCTGTTTCATCTAAAGT+TGG | - | chr8.4:20560951-20560970 | MS.gene61069:CDS | 40.0% |
| ! | GGTCCATCTGAGATTACTAT+GGG | - | chr8.4:20560972-20560991 | MS.gene61069:CDS | 40.0% |
| ! | GGTTGGAGTTGATTACAACT+TGG | - | chr8.4:20561262-20561281 | MS.gene61069:CDS | 40.0% |
| ! | TAGATGCTGATCAGTATTGG+AGG | - | chr8.4:20560868-20560887 | MS.gene61069:CDS | 40.0% |
| ! | TCCTATTGTGATTTGCACCA+AGG | - | chr8.4:20560794-20560813 | MS.gene61069:CDS | 40.0% |
| ! | TGACTTTTACCCTCTTGGAA+TGG | + | chr8.4:20560302-20560321 | None:intergenic | 40.0% |
| ! | TGGTCCATCTGAGATTACTA+TGG | - | chr8.4:20560971-20560990 | MS.gene61069:CDS | 40.0% |
| !! | GACTTTGACTTTTACCCTCT+TGG | + | chr8.4:20560307-20560326 | None:intergenic | 40.0% |
| !!! | GTTGCTCGAGTTTTGGATTT+TGG | - | chr8.4:20561026-20561045 | MS.gene61069:CDS | 40.0% |
| ACAGGTCATAACCAAGAGCA+TGG | + | chr8.4:20561112-20561131 | None:intergenic | 45.0% | |
| CAAAGTCAGTGTTCAGAAGG+AGG | - | chr8.4:20560320-20560339 | MS.gene61069:CDS | 45.0% | |
| CATGCCTGATAAACCTGACA+TGG | + | chr8.4:20559956-20559975 | None:intergenic | 45.0% | |
| CATGTCAGGTTTATCAGGCA+TGG | - | chr8.4:20559954-20559973 | MS.gene61069:CDS | 45.0% | |
| CCACCCATAGTAATCTCAGA+TGG | + | chr8.4:20560978-20560997 | None:intergenic | 45.0% | |
| CCATCAACTCCTCCAATTCA+GGG | + | chr8.4:20561310-20561329 | None:intergenic | 45.0% | |
| CCTGTTGAACGTACTCAACA+AGG | + | chr8.4:20560377-20560396 | None:intergenic | 45.0% | |
| CCTTGTTGAGTACGTTCAAC+AGG | - | chr8.4:20560374-20560393 | MS.gene61069:CDS | 45.0% | |
| CTTAAAGGACCCTGAATTGG+AGG | - | chr8.4:20561298-20561317 | MS.gene61069:CDS | 45.0% | |
| GGAAGTGATTTCCAAGAACG+AGG | + | chr8.4:20561224-20561243 | None:intergenic | 45.0% | |
| GTTTGAGGATGAAGATGAGG+AGG | - | chr8.4:20561352-20561371 | MS.gene61069:CDS | 45.0% | |
| TGTAGTCTGACCCAAGTTCT+TGG | + | chr8.4:20560174-20560193 | None:intergenic | 45.0% | |
| ! | CCATCTGAGATTACTATGGG+TGG | - | chr8.4:20560975-20560994 | MS.gene61069:CDS | 45.0% |
| !! | GAGCAGCTAATTCTGAAGCA+TGG | - | chr8.4:20560504-20560523 | MS.gene61069:CDS | 45.0% |
| !! | TGCTCAAGTTGCTCGAGTTT+TGG | - | chr8.4:20561019-20561038 | MS.gene61069:CDS | 45.0% |
| !!! | TTGGGGCATCTTTTAAAGCC+TGG | - | chr8.4:20561083-20561102 | MS.gene61069:CDS | 45.0% |
| ACAACTGCAACCCACTGATC+AGG | + | chr8.4:20560438-20560457 | None:intergenic | 50.0% | |
| ACTTGCAGCCACCAAGAACT+TGG | - | chr8.4:20560160-20560179 | MS.gene61069:CDS | 50.0% | |
| AGTCTGACCCAAGTTCTTGG+TGG | + | chr8.4:20560171-20560190 | None:intergenic | 50.0% | |
| CAACTGCAACCCACTGATCA+GGG | + | chr8.4:20560437-20560456 | None:intergenic | 50.0% | |
| CCCTGAATTGGAGGAGTTGA+TGG | - | chr8.4:20561307-20561326 | MS.gene61069:CDS | 50.0% | |
| CTTGCAGCCACCAAGAACTT+GGG | - | chr8.4:20560161-20560180 | MS.gene61069:CDS | 50.0% | |
| GCCATCAACTCCTCCAATTC+AGG | + | chr8.4:20561311-20561330 | None:intergenic | 50.0% | |
| TCAGGCAACATGTCTCTCAC+AGG | - | chr8.4:20560463-20560482 | MS.gene61069:CDS | 50.0% | |
| TGAATCATGTTCCAGGGTGC+AGG | - | chr8.4:20560407-20560426 | MS.gene61069:CDS | 50.0% | |
| ! | TAACCAAGAGCATGGTCACC+AGG | + | chr8.4:20561104-20561123 | None:intergenic | 50.0% |
| ! | TTGGTGGCTGCAAGTAGCTT+TGG | + | chr8.4:20560155-20560174 | None:intergenic | 50.0% |
| !! | CTGCAAGTAGCTTTGGCACA+CGG | + | chr8.4:20560148-20560167 | None:intergenic | 50.0% |
| !! | GAATTGGAGGAGTTGATGGC+TGG | - | chr8.4:20561311-20561330 | MS.gene61069:CDS | 50.0% |
| !! | TGCAAGTAGCTTTGGCACAC+GGG | + | chr8.4:20560147-20560166 | None:intergenic | 50.0% |
| AAGCCTGGTGACCATGCTCT+TGG | - | chr8.4:20561098-20561117 | MS.gene61069:CDS | 55.0% | |
| AATCAGCCCCATTTGTCGCG+AGG | - | chr8.4:20560722-20560741 | MS.gene61069:CDS | 55.0% | |
| GATGTGGGAAGCCTCGTTCT+TGG | - | chr8.4:20561210-20561229 | MS.gene61069:CDS | 55.0% | |
| GCAGGCTAACCCTGATCAGT+GGG | - | chr8.4:20560425-20560444 | MS.gene61069:CDS | 55.0% | |
| GGGTTGCAGTTGTGCAACTC+AGG | - | chr8.4:20560445-20560464 | MS.gene61069:CDS | 55.0% | |
| TGCAGGCTAACCCTGATCAG+TGG | - | chr8.4:20560424-20560443 | MS.gene61069:CDS | 55.0% | |
| !! | GCAAGTAGCTTTGGCACACG+GGG | + | chr8.4:20560146-20560165 | None:intergenic | 55.0% |
| GACGGAGCCCCATTCCAAGA+GGG | - | chr8.4:20560290-20560309 | MS.gene61069:CDS | 60.0% | |
| !! | ATCAGGGTTAGCCTGCACCC+TGG | + | chr8.4:20560421-20560440 | None:intergenic | 60.0% |
| GGACGGAGCCCCATTCCAAG+AGG | - | chr8.4:20560289-20560308 | MS.gene61069:CDS | 65.0% | |
| CGGGGCAATGCACGAGCACG+TGG | + | chr8.4:20560128-20560147 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 20559904 | 20561391 | 20559904 | ID=MS.gene61069 |
| chr8.4 | mRNA | 20559904 | 20561391 | 20559904 | ID=MS.gene61069.t1;Parent=MS.gene61069 |
| chr8.4 | exon | 20559904 | 20561391 | 20559904 | ID=MS.gene61069.t1.exon1;Parent=MS.gene61069.t1 |
| chr8.4 | CDS | 20559904 | 20561391 | 20559904 | ID=cds.MS.gene61069.t1;Parent=MS.gene61069.t1 |
| Gene Sequence |
| Protein sequence |
