Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57720.t1 | XP_013458178.1 | 95.4 | 238 | 11 | 0 | 1 | 238 | 1 | 238 | 9.90E-128 | 466.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57720.t1 | Q9ZT66 | 39.1 | 225 | 122 | 5 | 4 | 218 | 27 | 246 | 6.5e-35 | 149.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57720.t1 | A0A072UQU5 | 95.4 | 238 | 11 | 0 | 1 | 238 | 1 | 238 | 7.1e-128 | 466.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049170 | MS.gene57720 | 0.836084 | 1.15E-56 | -1.69E-46 |
MS.gene050426 | MS.gene57720 | -0.809945 | 1.47E-50 | -1.69E-46 |
MS.gene050670 | MS.gene57720 | 0.837964 | 3.81E-57 | -1.69E-46 |
MS.gene051521 | MS.gene57720 | 0.820069 | 8.33E-53 | -1.69E-46 |
MS.gene052188 | MS.gene57720 | 0.844932 | 5.57E-59 | -1.69E-46 |
MS.gene052469 | MS.gene57720 | 0.831601 | 1.52E-55 | -1.69E-46 |
MS.gene053169 | MS.gene57720 | 0.825168 | 5.43E-54 | -1.69E-46 |
MS.gene054556 | MS.gene57720 | 0.836307 | 1.01E-56 | -1.69E-46 |
MS.gene055539 | MS.gene57720 | 0.843908 | 1.05E-58 | -1.69E-46 |
MS.gene055741 | MS.gene57720 | 0.812726 | 3.67E-51 | -1.69E-46 |
MS.gene055744 | MS.gene57720 | 0.82108 | 4.88E-53 | -1.69E-46 |
MS.gene056659 | MS.gene57720 | 0.813502 | 2.48E-51 | -1.69E-46 |
MS.gene057396 | MS.gene57720 | 0.805113 | 1.56E-49 | -1.69E-46 |
MS.gene058120 | MS.gene57720 | 0.803012 | 4.27E-49 | -1.69E-46 |
MS.gene058700 | MS.gene57720 | 0.810927 | 9.04E-51 | -1.69E-46 |
MS.gene058948 | MS.gene57720 | 0.807443 | 5.04E-50 | -1.69E-46 |
MS.gene059420 | MS.gene57720 | 0.809282 | 2.04E-50 | -1.69E-46 |
MS.gene059717 | MS.gene57720 | 0.814744 | 1.32E-51 | -1.69E-46 |
MS.gene059788 | MS.gene57720 | 0.837943 | 3.86E-57 | -1.69E-46 |
MS.gene059946 | MS.gene57720 | 0.823337 | 1.46E-53 | -1.69E-46 |
MS.gene061154 | MS.gene57720 | 0.835027 | 2.13E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene57720 | MS.gene070774 | PPI |
MS.gene061318 | MS.gene57720 | PPI |
MS.gene57720 | MS.gene61602 | PPI |
MS.gene66599 | MS.gene57720 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57720.t1 | MTR_4g117380 | 95.378 | 238 | 11 | 0 | 1 | 238 | 1 | 238 | 8.08e-160 | 442 |
MS.gene57720.t1 | MTR_4g117400 | 66.527 | 239 | 79 | 1 | 1 | 238 | 55 | 293 | 7.54e-121 | 345 |
MS.gene57720.t1 | MTR_4g117450 | 64.435 | 239 | 84 | 1 | 1 | 238 | 1 | 239 | 5.55e-117 | 334 |
MS.gene57720.t1 | MTR_4g117450 | 61.600 | 250 | 84 | 2 | 1 | 238 | 1 | 250 | 9.07e-114 | 326 |
MS.gene57720.t1 | MTR_4g117390 | 63.598 | 239 | 76 | 2 | 1 | 238 | 1 | 229 | 5.60e-109 | 313 |
MS.gene57720.t1 | MTR_4g117450 | 67.403 | 181 | 58 | 1 | 59 | 238 | 2 | 182 | 2.58e-90 | 264 |
MS.gene57720.t1 | MTR_2g021340 | 54.357 | 241 | 107 | 3 | 1 | 238 | 1 | 241 | 4.83e-86 | 255 |
MS.gene57720.t1 | MTR_2g021340 | 55.157 | 223 | 98 | 2 | 18 | 238 | 22 | 244 | 1.24e-80 | 242 |
MS.gene57720.t1 | MTR_3g005060 | 27.536 | 207 | 141 | 4 | 37 | 237 | 115 | 318 | 4.12e-15 | 73.6 |
MS.gene57720.t1 | MTR_3g005060 | 27.536 | 207 | 141 | 4 | 37 | 237 | 129 | 332 | 4.93e-15 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57720.t1 | AT3G23600 | 68.619 | 239 | 74 | 1 | 1 | 238 | 1 | 239 | 1.06e-125 | 356 |
MS.gene57720.t1 | AT3G23600 | 67.364 | 239 | 74 | 2 | 1 | 238 | 1 | 236 | 1.59e-121 | 345 |
MS.gene57720.t1 | AT3G23570 | 64.435 | 239 | 84 | 1 | 1 | 238 | 1 | 239 | 6.07e-117 | 333 |
MS.gene57720.t1 | AT3G23570 | 64.435 | 239 | 84 | 1 | 1 | 238 | 1 | 239 | 6.07e-117 | 333 |
MS.gene57720.t1 | AT3G23570 | 64.435 | 239 | 84 | 1 | 1 | 238 | 1 | 239 | 6.07e-117 | 333 |
MS.gene57720.t1 | AT1G35420 | 27.751 | 209 | 138 | 6 | 37 | 237 | 70 | 273 | 4.60e-18 | 81.3 |
MS.gene57720.t1 | AT1G35420 | 27.751 | 209 | 138 | 6 | 37 | 237 | 111 | 314 | 5.01e-18 | 81.6 |
MS.gene57720.t1 | AT1G35420 | 27.751 | 209 | 138 | 6 | 37 | 237 | 106 | 309 | 6.48e-18 | 81.3 |
Find 60 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTGTCTCTGATGTTTA+TGG | 0.109227 | 8.3:-8811488 | MS.gene57720:intron |
CTGATAGGCCCTTGCCTATT+TGG | 0.125625 | 8.3:-8809917 | MS.gene57720:CDS |
AGAACAGCGGATTTGGAATT+AGG | 0.193141 | 8.3:+8811509 | None:intergenic |
CAAATAGGCAAGGGCCTATC+AGG | 0.225941 | 8.3:+8809918 | None:intergenic |
AATTAGCTATACCTTAAATT+TGG | 0.243468 | 8.3:+8810555 | None:intergenic |
GATATGAAGCGCCAAATTTA+AGG | 0.244805 | 8.3:-8810566 | MS.gene57720:intron |
TTCACAGCTTCTGCATCTTC+CGG | 0.247248 | 8.3:+8807572 | None:intergenic |
GACAAGAAGAACAGCGGATT+TGG | 0.260945 | 8.3:+8811502 | None:intergenic |
TCACAGCTTCTGCATCTTCC+GGG | 0.308736 | 8.3:+8807573 | None:intergenic |
TCAGCTCCAAGTATAGAAAA+TGG | 0.312128 | 8.3:+8808005 | None:intergenic |
GTTTCATCTGTCGGGGCTGC+TGG | 0.315874 | 8.3:-8809517 | MS.gene57720:CDS |
TGTTTCTGTGGACGACATAA+AGG | 0.316271 | 8.3:-8809221 | MS.gene57720:CDS |
TGAGGCACATCAAGACTTAC+TGG | 0.332421 | 8.3:-8807540 | MS.gene57720:CDS |
GATTGTAGGGTTCACCATTA+AGG | 0.341648 | 8.3:+8809949 | None:intergenic |
GTTGTTCCCGACTTCCTTAA+TGG | 0.344085 | 8.3:-8809963 | MS.gene57720:CDS |
TTCCTAAAGTTTCCCATGGC+TGG | 0.359638 | 8.3:-8807610 | MS.gene57720:CDS |
TCAAACTGTTTCACAAGCTC+TGG | 0.361384 | 8.3:+8807963 | None:intergenic |
ATCAGGGTTCTCGGGATTGT+AGG | 0.369856 | 8.3:+8809935 | None:intergenic |
GTCCAGCCATGGGAAACTTT+AGG | 0.383013 | 8.3:+8807608 | None:intergenic |
GTAAAGGTGTTTCATCTGTC+GGG | 0.417259 | 8.3:-8809525 | MS.gene57720:CDS |
CAAGGGCCTATCAGGGTTCT+CGG | 0.443980 | 8.3:+8809926 | None:intergenic |
GCAGACAAAGTTGCAGCTGC+TGG | 0.444923 | 8.3:-8809996 | MS.gene57720:CDS |
CACCGCAGCTTGGATAAGTC+TGG | 0.448910 | 8.3:+8809261 | None:intergenic |
ACAATCCCGAGAACCCTGAT+AGG | 0.450787 | 8.3:-8809932 | MS.gene57720:CDS |
CCTATTTGGATAAAAGATCA+TGG | 0.453160 | 8.3:-8809903 | MS.gene57720:CDS |
CTGAATCCGAATGCAGGATC+TGG | 0.456933 | 8.3:-8811578 | MS.gene57720:CDS |
CATTCGGATTCAGTGTTGGT+GGG | 0.459033 | 8.3:+8811588 | None:intergenic |
GTTTCTGTGGACGACATAAA+GGG | 0.461542 | 8.3:-8809220 | MS.gene57720:intron |
AGAAAGAAAGAAAGAATGTC+GGG | 0.484277 | 8.3:-8811629 | None:intergenic |
ACGTGACCAGATCCTGCATT+CGG | 0.496584 | 8.3:+8811572 | None:intergenic |
TCAGGGTTCTCGGGATTGTA+GGG | 0.497761 | 8.3:+8809936 | None:intergenic |
AAGGGCCTATCAGGGTTCTC+GGG | 0.511101 | 8.3:+8809927 | None:intergenic |
GCATTCGGATTCAGTGTTGG+TGG | 0.513869 | 8.3:+8811587 | None:intergenic |
GGTTCACCATTAAGGAAGTC+GGG | 0.517776 | 8.3:+8809957 | None:intergenic |
AGTAAAGGTGTTTCATCTGT+CGG | 0.519087 | 8.3:-8809526 | MS.gene57720:CDS |
AACTGTTTCACAAGCTCTGG+AGG | 0.526203 | 8.3:+8807966 | None:intergenic |
GATGCAACAGCACCGCAGCT+TGG | 0.538985 | 8.3:+8809251 | None:intergenic |
TGTATCTCACAGTCCAGCCA+TGG | 0.544793 | 8.3:+8807597 | None:intergenic |
GCATCCATCATTTGTTTCTG+TGG | 0.547944 | 8.3:-8809233 | MS.gene57720:CDS |
TCGTCCACAGAAACAAATGA+TGG | 0.552834 | 8.3:+8809229 | None:intergenic |
GCTCTCAATGCCTACATCGT+CGG | 0.557731 | 8.3:-8811536 | MS.gene57720:CDS |
CTGGACTGTGAGATACAGCC+CGG | 0.557853 | 8.3:-8807591 | MS.gene57720:CDS |
TCTGGTCACGTTGAAAAGCT+TGG | 0.558124 | 8.3:-8811560 | MS.gene57720:CDS |
GGGTTCACCATTAAGGAAGT+CGG | 0.562199 | 8.3:+8809956 | None:intergenic |
AGCTGTGAAAACTGCAGATG+AGG | 0.562425 | 8.3:-8807558 | MS.gene57720:CDS |
ATTAGGAGAACCGACGATGT+AGG | 0.563292 | 8.3:+8811526 | None:intergenic |
TGACCGCAGATTTAGCACTA+AGG | 0.564771 | 8.3:+8807934 | None:intergenic |
TGCAGCTGCTGGTTATTATG+TGG | 0.565842 | 8.3:-8809985 | MS.gene57720:CDS |
ATATTTCCTAAAGTTTCCCA+TGG | 0.570812 | 8.3:-8807614 | MS.gene57720:CDS |
CCTGCATTCGGATTCAGTGT+TGG | 0.576766 | 8.3:+8811584 | None:intergenic |
CCAACACTGAATCCGAATGC+AGG | 0.579836 | 8.3:-8811584 | MS.gene57720:CDS |
CACATCAAGACTTACTGGAC+TGG | 0.583292 | 8.3:-8807535 | MS.gene57720:CDS |
GTATCTCACAGTCCAGCCAT+GGG | 0.606707 | 8.3:+8807598 | None:intergenic |
TTATTATATTAACAGGACAA+AGG | 0.624184 | 8.3:-8809586 | MS.gene57720:intron |
AAATAGGCAAGGGCCTATCA+GGG | 0.626194 | 8.3:+8809919 | None:intergenic |
ATCCAGACTTATCCAAGCTG+CGG | 0.640963 | 8.3:-8809263 | MS.gene57720:CDS |
TAAAGGTGTTTCATCTGTCG+GGG | 0.641381 | 8.3:-8809524 | MS.gene57720:CDS |
TTGGATAAAAGATCATGGAA+CGG | 0.646563 | 8.3:-8809898 | MS.gene57720:intron |
AATCCTTAGTGCTAAATCTG+CGG | 0.663773 | 8.3:-8807937 | MS.gene57720:intron |
ATCAGAGACAAGAAGAACAG+CGG | 0.690019 | 8.3:+8811496 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTTTTTTTTTTTTTTTT+TGG | - | chr8.3:8811359-8811378 | MS.gene57720:intron | 0.0% |
!! | ATAATTGTAATTTATAAAGT+CGG | - | chr8.3:8808839-8808858 | MS.gene57720:intron | 10.0% |
!! | TTAATTAAGCAAAAAAAAAA+AGG | + | chr8.3:8807712-8807731 | None:intergenic | 10.0% |
!! | AAAAAAAAGGTGAATAAAAA+TGG | + | chr8.3:8807699-8807718 | None:intergenic | 15.0% |
!! | AGTTAATAAAGTAAAATGAA+TGG | + | chr8.3:8807796-8807815 | None:intergenic | 15.0% |
!! | ATACCTATTATTATATTAAC+AGG | - | chr8.3:8809535-8809554 | MS.gene57720:CDS | 15.0% |
!! | TAAGAAAAATGTATAAATGA+AGG | + | chr8.3:8810441-8810460 | None:intergenic | 15.0% |
!! | TCTTAAAGACTTAAAAATTA+TGG | - | chr8.3:8807862-8807881 | MS.gene57720:intron | 15.0% |
!!! | ATTCTAATCTTATCTTTTTT+TGG | - | chr8.3:8811261-8811280 | MS.gene57720:intron | 15.0% |
!!! | ATTTTCTTAAAAAAACTAGA+AGG | - | chr8.3:8808811-8808830 | MS.gene57720:intron | 15.0% |
!!! | TACAATTAAATGCATATTTT+TGG | + | chr8.3:8810624-8810643 | None:intergenic | 15.0% |
!!! | TGACTAGATTTTTAATTTAT+AGG | - | chr8.3:8808908-8808927 | MS.gene57720:intron | 15.0% |
!!! | TTTTCTTAAAAAAACTAGAA+GGG | - | chr8.3:8808812-8808831 | MS.gene57720:intron | 15.0% |
!!! | TTTTTAATTTGTACTTTTTG+TGG | - | chr8.3:8808441-8808460 | MS.gene57720:intron | 15.0% |
!! | AAAGTGGAATATATTGAATT+GGG | + | chr8.3:8810354-8810373 | None:intergenic | 20.0% |
!! | AAATTGATTGTAATTACAAC+TGG | + | chr8.3:8810047-8810066 | None:intergenic | 20.0% |
!! | AAGATTAGAATATCAAAAGA+TGG | + | chr8.3:8811252-8811271 | None:intergenic | 20.0% |
!! | AATAAATATAACCAATCATG+AGG | + | chr8.3:8810718-8810737 | None:intergenic | 20.0% |
!! | AATTAGCTATACCTTAAATT+TGG | + | chr8.3:8808576-8808595 | None:intergenic | 20.0% |
!! | ATCATTTAGTAATGAGAAAT+TGG | + | chr8.3:8808786-8808805 | None:intergenic | 20.0% |
!! | CTTAAAAATTATGGTTAACT+AGG | - | chr8.3:8807871-8807890 | MS.gene57720:intron | 20.0% |
!! | GATAATGATAATATGATACA+GGG | - | chr8.3:8808183-8808202 | MS.gene57720:intron | 20.0% |
!! | GTTAATTATTGTTCTTATTC+AGG | - | chr8.3:8811090-8811109 | MS.gene57720:intron | 20.0% |
!! | TATATACTAGTGCAAAAATT+AGG | - | chr8.3:8810765-8810784 | MS.gene57720:intron | 20.0% |
!! | TGTCCTGTTAATATAATAAT+AGG | + | chr8.3:8809541-8809560 | None:intergenic | 20.0% |
!! | TTATTATATTAACAGGACAA+AGG | - | chr8.3:8809542-8809561 | MS.gene57720:CDS | 20.0% |
!!! | ACTTACTGAAACTTTAATTT+TGG | - | chr8.3:8809359-8809378 | MS.gene57720:intron | 20.0% |
!!! | AGTTCTTATTTAACAATTCT+TGG | - | chr8.3:8809255-8809274 | MS.gene57720:CDS | 20.0% |
!!! | ATTTTTTGTACAACCAAATT+TGG | + | chr8.3:8808129-8808148 | None:intergenic | 20.0% |
!!! | GTATCAAATTTAGTCATTTT+TGG | - | chr8.3:8808612-8808631 | MS.gene57720:intron | 20.0% |
!!! | TGATAATGATAATATGATAC+AGG | - | chr8.3:8808182-8808201 | MS.gene57720:intron | 20.0% |
!!! | TTTTCTCTTTTACTTATCAA+AGG | + | chr8.3:8809298-8809317 | None:intergenic | 20.0% |
!!! | TTTTTTTACTTTTTCCTGTT+AGG | - | chr8.3:8808687-8808706 | MS.gene57720:intron | 20.0% |
! | AAGAATATAAATGCAGTATG+AGG | + | chr8.3:8808412-8808431 | None:intergenic | 25.0% |
! | AAGTAACAAAAATCAGCATT+TGG | - | chr8.3:8808487-8808506 | MS.gene57720:intron | 25.0% |
! | AATTCATATGTTCTCACTAA+CGG | + | chr8.3:8808320-8808339 | None:intergenic | 25.0% |
! | ACAGTTTATCTAACTTATGT+CGG | - | chr8.3:8810930-8810949 | MS.gene57720:intron | 25.0% |
! | AGAATATAAATGCAGTATGA+GGG | + | chr8.3:8808411-8808430 | None:intergenic | 25.0% |
! | AGTAACAAAAATCAGCATTT+GGG | - | chr8.3:8808488-8808507 | MS.gene57720:intron | 25.0% |
! | ATGAAACATGTAGATTGTAT+TGG | + | chr8.3:8809024-8809043 | None:intergenic | 25.0% |
! | ATGAGAAATTATAAGCGAAA+AGG | + | chr8.3:8808978-8808997 | None:intergenic | 25.0% |
! | ATTATCATTATCAACTCTAG+TGG | + | chr8.3:8808175-8808194 | None:intergenic | 25.0% |
! | ATTGAAGCCATAAAAAGTAA+AGG | - | chr8.3:8809587-8809606 | MS.gene57720:intron | 25.0% |
! | ATTTGAACACGTTAAAATTG+TGG | + | chr8.3:8807839-8807858 | None:intergenic | 25.0% |
! | CAAAGTGGAATATATTGAAT+TGG | + | chr8.3:8810355-8810374 | None:intergenic | 25.0% |
! | CTTATAATTTCTCATGTTGT+TGG | - | chr8.3:8808983-8809002 | MS.gene57720:intron | 25.0% |
! | GTTGTATTGAAAAGTGAAAT+GGG | + | chr8.3:8810306-8810325 | None:intergenic | 25.0% |
! | TAATGCCAATAGAATATGTA+AGG | + | chr8.3:8810219-8810238 | None:intergenic | 25.0% |
! | TAGTACCTTACATATTCTAT+TGG | - | chr8.3:8810211-8810230 | MS.gene57720:intron | 25.0% |
! | TAGTGTTTAAAAAGGTGAAA+AGG | + | chr8.3:8811449-8811468 | None:intergenic | 25.0% |
! | TGAGTTACTAGTGTTTAAAA+AGG | + | chr8.3:8811457-8811476 | None:intergenic | 25.0% |
! | TGTTGTATTGAAAAGTGAAA+TGG | + | chr8.3:8810307-8810326 | None:intergenic | 25.0% |
! | TTCAGTAAGTATACAAAAAC+TGG | + | chr8.3:8809349-8809368 | None:intergenic | 25.0% |
! | TTGTATAAGATGCAGTTTAA+TGG | - | chr8.3:8810805-8810824 | MS.gene57720:intron | 25.0% |
!! | ACTTTTTATGGCTTCAATTA+TGG | + | chr8.3:8809585-8809604 | None:intergenic | 25.0% |
!! | ATGAGAAAATATGATCGTTT+TGG | + | chr8.3:8810156-8810175 | None:intergenic | 25.0% |
!! | ATTTAAGGTATAGCTAATTC+TGG | - | chr8.3:8808577-8808596 | MS.gene57720:intron | 25.0% |
!! | CAAATATTTTCGTACAGAAA+AGG | + | chr8.3:8809719-8809738 | None:intergenic | 25.0% |
!! | CGTAGAATTATTTGGTTTAT+TGG | - | chr8.3:8808943-8808962 | MS.gene57720:intron | 25.0% |
!! | CTTTTTATGGCTTCAATTAT+GGG | + | chr8.3:8809584-8809603 | None:intergenic | 25.0% |
!! | TAATTTGCGTATTGTTTGTA+TGG | - | chr8.3:8809948-8809967 | MS.gene57720:CDS | 25.0% |
!! | TTAATGTTTGAAATGCAACT+AGG | - | chr8.3:8809770-8809789 | MS.gene57720:intron | 25.0% |
!! | TTAATTTTCTCTTTCGTTTG+TGG | - | chr8.3:8811219-8811238 | MS.gene57720:intron | 25.0% |
!!! | GGACAATATTTTTTTGCAAA+TGG | + | chr8.3:8810271-8810290 | None:intergenic | 25.0% |
!!! | TGAAACACCTTTACTTTTTA+TGG | + | chr8.3:8809597-8809616 | None:intergenic | 25.0% |
!!! | TTTACTTTTTGTATCAGCTA+AGG | - | chr8.3:8809823-8809842 | MS.gene57720:intron | 25.0% |
AAAAATAAGCCAATCCAAAC+AGG | - | chr8.3:8808385-8808404 | MS.gene57720:intron | 30.0% | |
AAAATATTTGAGCTCGTCAT+AGG | - | chr8.3:8809729-8809748 | MS.gene57720:intron | 30.0% | |
AGGTACTAGTACCAAATAAT+AGG | + | chr8.3:8810199-8810218 | None:intergenic | 30.0% | |
AGGTGATTAATTACTTTCAG+TGG | + | chr8.3:8808062-8808081 | None:intergenic | 30.0% | |
ATAAGAAATAAGTAGAGGTG+TGG | + | chr8.3:8809686-8809705 | None:intergenic | 30.0% | |
ATATGTGTGAAACGAGTAAA+TGG | - | chr8.3:8810461-8810480 | MS.gene57720:intron | 30.0% | |
ATATTTCCTAAAGTTTCCCA+TGG | - | chr8.3:8811514-8811533 | MS.gene57720:CDS | 30.0% | |
ATCATGTGAACACATTACAA+TGG | + | chr8.3:8809075-8809094 | None:intergenic | 30.0% | |
ATTTATCCCTTGCAATAACA+AGG | + | chr8.3:8808654-8808673 | None:intergenic | 30.0% | |
CCTATTTGGATAAAAGATCA+TGG | - | chr8.3:8809225-8809244 | MS.gene57720:CDS | 30.0% | |
CTACTATAATAAGTGCAAAG+TGG | + | chr8.3:8810370-8810389 | None:intergenic | 30.0% | |
CTCGGTATTAATTGATTACT+TGG | - | chr8.3:8810956-8810975 | MS.gene57720:intron | 30.0% | |
CTGTTAGAATATGAACATCT+CGG | + | chr8.3:8811071-8811090 | None:intergenic | 30.0% | |
GACGATAAATATGGTCATTA+AGG | + | chr8.3:8810120-8810139 | None:intergenic | 30.0% | |
GATGCATAAGAAATAAGTAG+AGG | + | chr8.3:8809663-8809682 | None:intergenic | 30.0% | |
GATTAATTACTTTCAGTGGA+TGG | + | chr8.3:8808058-8808077 | None:intergenic | 30.0% | |
GCATTTGTCGTAGAATTATT+TGG | - | chr8.3:8808935-8808954 | MS.gene57720:intron | 30.0% | |
GTGGTTAACAAGATTCAAAT+AGG | + | chr8.3:8808082-8808101 | None:intergenic | 30.0% | |
TAATGACCATATTTATCGTC+AGG | - | chr8.3:8810120-8810139 | MS.gene57720:intron | 30.0% | |
TACCAAATAATAGGCAACTA+TGG | + | chr8.3:8810190-8810209 | None:intergenic | 30.0% | |
TACTATTCATAAGCTTGTCA+AGG | - | chr8.3:8808258-8808277 | MS.gene57720:intron | 30.0% | |
TAGAATTCAAGAAACCTAAC+AGG | + | chr8.3:8808704-8808723 | None:intergenic | 30.0% | |
TTAATTGTAACATACAGCAG+AGG | - | chr8.3:8810635-8810654 | MS.gene57720:intron | 30.0% | |
TTGGATAAAAGATCATGGAA+CGG | - | chr8.3:8809230-8809249 | MS.gene57720:CDS | 30.0% | |
! | AAATTGGATTAGAGAGAACA+TGG | + | chr8.3:8808770-8808789 | None:intergenic | 30.0% |
! | ATCTTTTATCCAAATAGGCA+AGG | + | chr8.3:8809223-8809242 | None:intergenic | 30.0% |
! | CATTTAACTTATGCTTCTAG+AGG | - | chr8.3:8810834-8810853 | MS.gene57720:intron | 30.0% |
! | CCATGATCTTTTATCCAAAT+AGG | + | chr8.3:8809228-8809247 | None:intergenic | 30.0% |
! | GACATTCCATTTTCTATACT+TGG | - | chr8.3:8811117-8811136 | MS.gene57720:intron | 30.0% |
! | TAAGAAATAAGTAGAGGTGT+GGG | + | chr8.3:8809685-8809704 | None:intergenic | 30.0% |
! | TCTTTTATCCAAATAGGCAA+GGG | + | chr8.3:8809222-8809241 | None:intergenic | 30.0% |
! | TGCATGTTTTTCATAGTTCA+TGG | - | chr8.3:8807995-8808014 | MS.gene57720:CDS | 30.0% |
! | TTGTTATTGCAAGGGATAAA+TGG | - | chr8.3:8808653-8808672 | MS.gene57720:intron | 30.0% |
!! | ATATGCTTAATTTGTCTTGC+AGG | - | chr8.3:8808540-8808559 | MS.gene57720:intron | 30.0% |
!! | TTTGGCAACAACTTTTTAAG+TGG | + | chr8.3:8808101-8808120 | None:intergenic | 30.0% |
!!! | CTTGTATGTTTTCAGGTAAT+AGG | - | chr8.3:8810081-8810100 | MS.gene57720:intron | 30.0% |
!!! | TGAAATGGGTCAACTTTTTT+GGG | + | chr8.3:8810292-8810311 | None:intergenic | 30.0% |
AACAAAAGACGCAAAGACAA+TGG | + | chr8.3:8810910-8810929 | None:intergenic | 35.0% | |
AAGCATATGCAGTTAGTAGA+AGG | + | chr8.3:8808528-8808547 | None:intergenic | 35.0% | |
AATAGGTATGCATCAGAGAA+TGG | + | chr8.3:8809524-8809543 | None:intergenic | 35.0% | |
AATATGATACAGGGTCTCTT+TGG | - | chr8.3:8808192-8808211 | MS.gene57720:intron | 35.0% | |
AATCCTTAGTGCTAAATCTG+CGG | - | chr8.3:8811191-8811210 | MS.gene57720:intron | 35.0% | |
ACAAAAGACGCAAAGACAAT+GGG | + | chr8.3:8810909-8810928 | None:intergenic | 35.0% | |
AGGCTAATTACATGCTACAT+AGG | - | chr8.3:8810854-8810873 | MS.gene57720:intron | 35.0% | |
ATCAAAACCACCAATAAAGG+TGG | + | chr8.3:8809452-8809471 | None:intergenic | 35.0% | |
ATCATTATCAACTCTAGTGG+TGG | + | chr8.3:8808172-8808191 | None:intergenic | 35.0% | |
ATGGCTCAGTTAATCTAGAA+CGG | - | chr8.3:8810480-8810499 | MS.gene57720:intron | 35.0% | |
CAACCAAATTTGGAGAACTT+TGG | + | chr8.3:8808119-8808138 | None:intergenic | 35.0% | |
CACCATAGTTGCCTATTATT+TGG | - | chr8.3:8810185-8810204 | MS.gene57720:intron | 35.0% | |
CACGTTAAAATTGTGGTTGA+TGG | + | chr8.3:8807832-8807851 | None:intergenic | 35.0% | |
CTTCTTGTCTCTGATGTTTA+TGG | - | chr8.3:8807640-8807659 | MS.gene57720:intron | 35.0% | |
GCAAATGGCTCAGTTATTAT+GGG | + | chr8.3:8810256-8810275 | None:intergenic | 35.0% | |
TAAGTGCTCTTGTTAAGCAT+TGG | + | chr8.3:8810401-8810420 | None:intergenic | 35.0% | |
TATGAAAAACATGCACTCCT+CGG | + | chr8.3:8807990-8808009 | None:intergenic | 35.0% | |
TCAAAACCACCAATAAAGGT+GGG | + | chr8.3:8809451-8809470 | None:intergenic | 35.0% | |
TCAGCTCCAAGTATAGAAAA+TGG | + | chr8.3:8811126-8811145 | None:intergenic | 35.0% | |
TCTAACTTATGTCGGTAACT+CGG | - | chr8.3:8810938-8810957 | MS.gene57720:intron | 35.0% | |
TGCAAATGGCTCAGTTATTA+TGG | + | chr8.3:8810257-8810276 | None:intergenic | 35.0% | |
TTGCCAAAGTTCTCCAAATT+TGG | - | chr8.3:8808113-8808132 | MS.gene57720:intron | 35.0% | |
TTGTTTGTTCACTGCTTTGA+AGG | - | chr8.3:8809103-8809122 | MS.gene57720:intron | 35.0% | |
! | ATGCAGTTAGTAGAAGGTTT+TGG | + | chr8.3:8808522-8808541 | None:intergenic | 35.0% |
! | ATTTTCGTACAGAAAAGGTG+TGG | + | chr8.3:8809714-8809733 | None:intergenic | 35.0% |
! | CAACATGCTTGTATGTTTTC+AGG | - | chr8.3:8810074-8810093 | MS.gene57720:intron | 35.0% |
! | CATTAGCCTGACGATAAATA+TGG | + | chr8.3:8810129-8810148 | None:intergenic | 35.0% |
! | GATATGAAGCGCCAAATTTA+AGG | - | chr8.3:8808562-8808581 | MS.gene57720:intron | 35.0% |
! | TAAGATGCAGTTTAATGGAC+TGG | - | chr8.3:8810810-8810829 | MS.gene57720:intron | 35.0% |
!! | AAGATGCAGTTTAATGGACT+GGG | - | chr8.3:8810811-8810830 | MS.gene57720:intron | 35.0% |
!! | AGTAAAGGTGTTTCATCTGT+CGG | - | chr8.3:8809602-8809621 | MS.gene57720:intron | 35.0% |
!! | CAGAGGTATTTCAAACACAA+TGG | - | chr8.3:8810652-8810671 | MS.gene57720:intron | 35.0% |
!! | CATGTACCTTGTTATTGCAA+GGG | - | chr8.3:8808645-8808664 | MS.gene57720:intron | 35.0% |
!! | TTTTCGTACAGAAAAGGTGT+GGG | + | chr8.3:8809713-8809732 | None:intergenic | 35.0% |
!!! | CCTTTATTGGTGGTTTTGAT+CGG | - | chr8.3:8809452-8809471 | MS.gene57720:intron | 35.0% |
!!! | GTGAAATGGGTCAACTTTTT+TGG | + | chr8.3:8810293-8810312 | None:intergenic | 35.0% |
AAGCTAAACACACGCATTGT+TGG | - | chr8.3:8811385-8811404 | MS.gene57720:intron | 40.0% | |
AGAGAAGAGAAGAGAAGAGA+AGG | + | chr8.3:8807668-8807687 | None:intergenic | 40.0% | |
ATCAGAGACAAGAAGAACAG+CGG | + | chr8.3:8807635-8807654 | None:intergenic | 40.0% | |
ATGGCTCAGTTATTATGGGA+CGG | + | chr8.3:8810252-8810271 | None:intergenic | 40.0% | |
CCGATCAAAACCACCAATAA+AGG | + | chr8.3:8809455-8809474 | None:intergenic | 40.0% | |
GATTGTAGGGTTCACCATTA+AGG | + | chr8.3:8809182-8809201 | None:intergenic | 40.0% | |
GTTTCTGTGGACGACATAAA+GGG | - | chr8.3:8809908-8809927 | MS.gene57720:CDS | 40.0% | |
TCAAACTGTTTCACAAGCTC+TGG | + | chr8.3:8811168-8811187 | None:intergenic | 40.0% | |
TCGTCCACAGAAACAAATGA+TGG | + | chr8.3:8809902-8809921 | None:intergenic | 40.0% | |
! | AGAACAGCGGATTTGGAATT+AGG | + | chr8.3:8807622-8807641 | None:intergenic | 40.0% |
! | CTCAGTTAATCTAGAACGGA+GGG | - | chr8.3:8810484-8810503 | MS.gene57720:intron | 40.0% |
! | TCCTAGTGTTTTACATGCGT+CGG | + | chr8.3:8807957-8807976 | None:intergenic | 40.0% |
! | TGTTTCTGTGGACGACATAA+AGG | - | chr8.3:8809907-8809926 | MS.gene57720:CDS | 40.0% |
!! | GCATCCATCATTTGTTTCTG+TGG | - | chr8.3:8809895-8809914 | MS.gene57720:intron | 40.0% |
!! | GCATGTACCTTGTTATTGCA+AGG | - | chr8.3:8808644-8808663 | MS.gene57720:intron | 40.0% |
!! | GTAAAGGTGTTTCATCTGTC+GGG | - | chr8.3:8809603-8809622 | MS.gene57720:intron | 40.0% |
!! | TAAAGGTGTTTCATCTGTCG+GGG | - | chr8.3:8809604-8809623 | MS.gene57720:intron | 40.0% |
AAACCACCAATAAAGGTGGG+AGG | + | chr8.3:8809448-8809467 | None:intergenic | 45.0% | |
AAAGCAGTGCTCACATAAGC+AGG | + | chr8.3:8808730-8808749 | None:intergenic | 45.0% | |
AAATAGGCAAGGGCCTATCA+GGG | + | chr8.3:8809212-8809231 | None:intergenic | 45.0% | |
ACTAGGACACAGTTAATCCG+AGG | - | chr8.3:8807970-8807989 | MS.gene57720:CDS | 45.0% | |
ACTTGGCTGCACGACAAAAA+TGG | + | chr8.3:8811485-8811504 | None:intergenic | 45.0% | |
AGCTGTGAAAACTGCAGATG+AGG | - | chr8.3:8811570-8811589 | MS.gene57720:CDS | 45.0% | |
AGTTCGTGGTCTATGAAGCA+CGG | - | chr8.3:8807898-8807917 | MS.gene57720:intron | 45.0% | |
ATCCAGACTTATCCAAGCTG+CGG | - | chr8.3:8809865-8809884 | MS.gene57720:intron | 45.0% | |
ATTAGGAGAACCGACGATGT+AGG | + | chr8.3:8807605-8807624 | None:intergenic | 45.0% | |
CAATAAAGGTGGGAGGACAA+TGG | + | chr8.3:8809441-8809460 | None:intergenic | 45.0% | |
CACATCAAGACTTACTGGAC+TGG | - | chr8.3:8811593-8811612 | MS.gene57720:CDS | 45.0% | |
CATTGTCCTCCCACCTTTAT+TGG | - | chr8.3:8809439-8809458 | MS.gene57720:intron | 45.0% | |
CTCAGTTATTATGGGACGGA+GGG | + | chr8.3:8810248-8810267 | None:intergenic | 45.0% | |
CTTGGCTGCACGACAAAAAT+GGG | + | chr8.3:8811484-8811503 | None:intergenic | 45.0% | |
GACGCAAAGACAATGGGAAA+AGG | + | chr8.3:8810903-8810922 | None:intergenic | 45.0% | |
GGGTTCACCATTAAGGAAGT+CGG | + | chr8.3:8809175-8809194 | None:intergenic | 45.0% | |
GGTTCACCATTAAGGAAGTC+GGG | + | chr8.3:8809174-8809193 | None:intergenic | 45.0% | |
GTACTTAGCTGCCTCATGAT+TGG | - | chr8.3:8810704-8810723 | MS.gene57720:intron | 45.0% | |
GTTAACTAGGTCCAAGTTCG+TGG | - | chr8.3:8807884-8807903 | MS.gene57720:intron | 45.0% | |
GTTGTTCCCGACTTCCTTAA+TGG | - | chr8.3:8809165-8809184 | MS.gene57720:intron | 45.0% | |
TCTGGTCACGTTGAAAAGCT+TGG | - | chr8.3:8807568-8807587 | MS.gene57720:CDS | 45.0% | |
TGACCGCAGATTTAGCACTA+AGG | + | chr8.3:8811197-8811216 | None:intergenic | 45.0% | |
TGAGGCACATCAAGACTTAC+TGG | - | chr8.3:8811588-8811607 | MS.gene57720:CDS | 45.0% | |
TGCTTCATAGACCACGAACT+TGG | + | chr8.3:8807898-8807917 | None:intergenic | 45.0% | |
TTCACAGCTTCTGCATCTTC+CGG | + | chr8.3:8811559-8811578 | None:intergenic | 45.0% | |
TTCCTAAAGTTTCCCATGGC+TGG | - | chr8.3:8811518-8811537 | MS.gene57720:CDS | 45.0% | |
! | AACTGTTTCACAAGCTCTGG+AGG | + | chr8.3:8811165-8811184 | None:intergenic | 45.0% |
! | GACAAGAAGAACAGCGGATT+TGG | + | chr8.3:8807629-8807648 | None:intergenic | 45.0% |
! | GCTCAGTTAATCTAGAACGG+AGG | - | chr8.3:8810483-8810502 | MS.gene57720:intron | 45.0% |
! | TGCAGCTGCTGGTTATTATG+TGG | - | chr8.3:8809143-8809162 | MS.gene57720:intron | 45.0% |
!! | CATTCGGATTCAGTGTTGGT+GGG | + | chr8.3:8807543-8807562 | None:intergenic | 45.0% |
ACAATCCCGAGAACCCTGAT+AGG | - | chr8.3:8809196-8809215 | MS.gene57720:intron | 50.0% | |
ACGTGACCAGATCCTGCATT+CGG | + | chr8.3:8807559-8807578 | None:intergenic | 50.0% | |
ATCAGGGTTCTCGGGATTGT+AGG | + | chr8.3:8809196-8809215 | None:intergenic | 50.0% | |
ATGCAGTATGAGGGCCTGTT+TGG | + | chr8.3:8808402-8808421 | None:intergenic | 50.0% | |
CAAATAGGCAAGGGCCTATC+AGG | + | chr8.3:8809213-8809232 | None:intergenic | 50.0% | |
CCAACACTGAATCCGAATGC+AGG | - | chr8.3:8807544-8807563 | MS.gene57720:CDS | 50.0% | |
CCTGCATTCGGATTCAGTGT+TGG | + | chr8.3:8807547-8807566 | None:intergenic | 50.0% | |
CTGAATCCGAATGCAGGATC+TGG | - | chr8.3:8807550-8807569 | MS.gene57720:CDS | 50.0% | |
CTGATAGGCCCTTGCCTATT+TGG | - | chr8.3:8809211-8809230 | MS.gene57720:intron | 50.0% | |
GCCGACGCATGTAAAACACT+AGG | - | chr8.3:8807953-8807972 | MS.gene57720:CDS | 50.0% | |
GCTCAGTTATTATGGGACGG+AGG | + | chr8.3:8810249-8810268 | None:intergenic | 50.0% | |
GCTCTCAATGCCTACATCGT+CGG | - | chr8.3:8807592-8807611 | MS.gene57720:CDS | 50.0% | |
GTATCTCACAGTCCAGCCAT+GGG | + | chr8.3:8811533-8811552 | None:intergenic | 50.0% | |
GTATGAGGGCCTGTTTGGAT+TGG | + | chr8.3:8808397-8808416 | None:intergenic | 50.0% | |
GTCCAGCCATGGGAAACTTT+AGG | + | chr8.3:8811523-8811542 | None:intergenic | 50.0% | |
TCACAGCTTCTGCATCTTCC+GGG | + | chr8.3:8811558-8811577 | None:intergenic | 50.0% | |
TCAGGGTTCTCGGGATTGTA+GGG | + | chr8.3:8809195-8809214 | None:intergenic | 50.0% | |
TGTATCTCACAGTCCAGCCA+TGG | + | chr8.3:8811534-8811553 | None:intergenic | 50.0% | |
TGTCCTCCCACCTTTATTGG+TGG | - | chr8.3:8809442-8809461 | MS.gene57720:intron | 50.0% | |
! | GCATTCGGATTCAGTGTTGG+TGG | + | chr8.3:8807544-8807563 | None:intergenic | 50.0% |
AAGGGCCTATCAGGGTTCTC+GGG | + | chr8.3:8809204-8809223 | None:intergenic | 55.0% | |
CAAGGGCCTATCAGGGTTCT+CGG | + | chr8.3:8809205-8809224 | None:intergenic | 55.0% | |
CACCGCAGCTTGGATAAGTC+TGG | + | chr8.3:8809870-8809889 | None:intergenic | 55.0% | |
CTGGACTGTGAGATACAGCC+CGG | - | chr8.3:8811537-8811556 | MS.gene57720:CDS | 55.0% | |
GCAGACAAAGTTGCAGCTGC+TGG | - | chr8.3:8809132-8809151 | MS.gene57720:intron | 55.0% | |
GGTCTATGAAGCACGGACAC+CGG | - | chr8.3:8807905-8807924 | MS.gene57720:intron | 55.0% | |
! | CGGGGCTGCTGGATTTTGTT+GGG | - | chr8.3:8809622-8809641 | MS.gene57720:intron | 55.0% |
! | GCTGCTGGATTTTGTTGGGG+TGG | - | chr8.3:8809626-8809645 | MS.gene57720:intron | 55.0% |
! | GGGGCTGCTGGATTTTGTTG+GGG | - | chr8.3:8809623-8809642 | MS.gene57720:intron | 55.0% |
! | TCGGGGCTGCTGGATTTTGT+TGG | - | chr8.3:8809621-8809640 | MS.gene57720:intron | 55.0% |
!! | GTTTTACATGCGTCGGCGTC+CGG | + | chr8.3:8807950-8807969 | None:intergenic | 55.0% |
ACACCACACACCGACGACAC+CGG | - | chr8.3:8807928-8807947 | MS.gene57720:intron | 60.0% | |
GATGCAACAGCACCGCAGCT+TGG | + | chr8.3:8809880-8809899 | None:intergenic | 60.0% | |
GTTTCATCTGTCGGGGCTGC+TGG | - | chr8.3:8809611-8809630 | MS.gene57720:intron | 60.0% | |
TGTCGTCGGTGTGTGGTGTC+CGG | + | chr8.3:8807927-8807946 | None:intergenic | 60.0% | |
!! | CGTCCGGTGTCGTCGGTGTG+TGG | + | chr8.3:8807934-8807953 | None:intergenic | 70.0% |
!! | GCGTCGGCGTCCGGTGTCGT+CGG | + | chr8.3:8807941-8807960 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 8807514 | 8811636 | 8807514 | ID=MS.gene57720 |
chr8.3 | mRNA | 8807514 | 8811636 | 8807514 | ID=MS.gene57720.t1;Parent=MS.gene57720 |
chr8.3 | exon | 8811489 | 8811636 | 8811489 | ID=MS.gene57720.t1.exon1;Parent=MS.gene57720.t1 |
chr8.3 | CDS | 8811489 | 8811636 | 8811489 | ID=cds.MS.gene57720.t1;Parent=MS.gene57720.t1 |
chr8.3 | exon | 8810567 | 8810588 | 8810567 | ID=MS.gene57720.t1.exon2;Parent=MS.gene57720.t1 |
chr8.3 | CDS | 8810567 | 8810588 | 8810567 | ID=cds.MS.gene57720.t1;Parent=MS.gene57720.t1 |
chr8.3 | exon | 8809899 | 8810025 | 8809899 | ID=MS.gene57720.t1.exon3;Parent=MS.gene57720.t1 |
chr8.3 | CDS | 8809899 | 8810025 | 8809899 | ID=cds.MS.gene57720.t1;Parent=MS.gene57720.t1 |
chr8.3 | exon | 8809503 | 8809593 | 8809503 | ID=MS.gene57720.t1.exon4;Parent=MS.gene57720.t1 |
chr8.3 | CDS | 8809503 | 8809593 | 8809503 | ID=cds.MS.gene57720.t1;Parent=MS.gene57720.t1 |
chr8.3 | exon | 8809221 | 8809310 | 8809221 | ID=MS.gene57720.t1.exon5;Parent=MS.gene57720.t1 |
chr8.3 | CDS | 8809221 | 8809310 | 8809221 | ID=cds.MS.gene57720.t1;Parent=MS.gene57720.t1 |
chr8.3 | exon | 8807938 | 8808038 | 8807938 | ID=MS.gene57720.t1.exon6;Parent=MS.gene57720.t1 |
chr8.3 | CDS | 8807938 | 8808038 | 8807938 | ID=cds.MS.gene57720.t1;Parent=MS.gene57720.t1 |
chr8.3 | exon | 8807514 | 8807651 | 8807514 | ID=MS.gene57720.t1.exon7;Parent=MS.gene57720.t1 |
chr8.3 | CDS | 8807514 | 8807651 | 8807514 | ID=cds.MS.gene57720.t1;Parent=MS.gene57720.t1 |
Gene Sequence |
Protein sequence |