AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57720.t1 MTR_4g117380 95.378 238 11 0 1 238 1 238 8.08e-160 442
MS.gene57720.t1 MTR_4g117400 66.527 239 79 1 1 238 55 293 7.54e-121 345
MS.gene57720.t1 MTR_4g117450 64.435 239 84 1 1 238 1 239 5.55e-117 334
MS.gene57720.t1 MTR_4g117450 61.600 250 84 2 1 238 1 250 9.07e-114 326
MS.gene57720.t1 MTR_4g117390 63.598 239 76 2 1 238 1 229 5.60e-109 313
MS.gene57720.t1 MTR_4g117450 67.403 181 58 1 59 238 2 182 2.58e-90 264
MS.gene57720.t1 MTR_2g021340 54.357 241 107 3 1 238 1 241 4.83e-86 255
MS.gene57720.t1 MTR_2g021340 55.157 223 98 2 18 238 22 244 1.24e-80 242
MS.gene57720.t1 MTR_3g005060 27.536 207 141 4 37 237 115 318 4.12e-15 73.6
MS.gene57720.t1 MTR_3g005060 27.536 207 141 4 37 237 129 332 4.93e-15 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57720.t1 AT3G23600 68.619 239 74 1 1 238 1 239 1.06e-125 356
MS.gene57720.t1 AT3G23600 67.364 239 74 2 1 238 1 236 1.59e-121 345
MS.gene57720.t1 AT3G23570 64.435 239 84 1 1 238 1 239 6.07e-117 333
MS.gene57720.t1 AT3G23570 64.435 239 84 1 1 238 1 239 6.07e-117 333
MS.gene57720.t1 AT3G23570 64.435 239 84 1 1 238 1 239 6.07e-117 333
MS.gene57720.t1 AT1G35420 27.751 209 138 6 37 237 70 273 4.60e-18 81.3
MS.gene57720.t1 AT1G35420 27.751 209 138 6 37 237 111 314 5.01e-18 81.6
MS.gene57720.t1 AT1G35420 27.751 209 138 6 37 237 106 309 6.48e-18 81.3

Find 60 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGTCTCTGATGTTTA+TGG 0.109227 8.3:-8811488 MS.gene57720:intron
CTGATAGGCCCTTGCCTATT+TGG 0.125625 8.3:-8809917 MS.gene57720:CDS
AGAACAGCGGATTTGGAATT+AGG 0.193141 8.3:+8811509 None:intergenic
CAAATAGGCAAGGGCCTATC+AGG 0.225941 8.3:+8809918 None:intergenic
AATTAGCTATACCTTAAATT+TGG 0.243468 8.3:+8810555 None:intergenic
GATATGAAGCGCCAAATTTA+AGG 0.244805 8.3:-8810566 MS.gene57720:intron
TTCACAGCTTCTGCATCTTC+CGG 0.247248 8.3:+8807572 None:intergenic
GACAAGAAGAACAGCGGATT+TGG 0.260945 8.3:+8811502 None:intergenic
TCACAGCTTCTGCATCTTCC+GGG 0.308736 8.3:+8807573 None:intergenic
TCAGCTCCAAGTATAGAAAA+TGG 0.312128 8.3:+8808005 None:intergenic
GTTTCATCTGTCGGGGCTGC+TGG 0.315874 8.3:-8809517 MS.gene57720:CDS
TGTTTCTGTGGACGACATAA+AGG 0.316271 8.3:-8809221 MS.gene57720:CDS
TGAGGCACATCAAGACTTAC+TGG 0.332421 8.3:-8807540 MS.gene57720:CDS
GATTGTAGGGTTCACCATTA+AGG 0.341648 8.3:+8809949 None:intergenic
GTTGTTCCCGACTTCCTTAA+TGG 0.344085 8.3:-8809963 MS.gene57720:CDS
TTCCTAAAGTTTCCCATGGC+TGG 0.359638 8.3:-8807610 MS.gene57720:CDS
TCAAACTGTTTCACAAGCTC+TGG 0.361384 8.3:+8807963 None:intergenic
ATCAGGGTTCTCGGGATTGT+AGG 0.369856 8.3:+8809935 None:intergenic
GTCCAGCCATGGGAAACTTT+AGG 0.383013 8.3:+8807608 None:intergenic
GTAAAGGTGTTTCATCTGTC+GGG 0.417259 8.3:-8809525 MS.gene57720:CDS
CAAGGGCCTATCAGGGTTCT+CGG 0.443980 8.3:+8809926 None:intergenic
GCAGACAAAGTTGCAGCTGC+TGG 0.444923 8.3:-8809996 MS.gene57720:CDS
CACCGCAGCTTGGATAAGTC+TGG 0.448910 8.3:+8809261 None:intergenic
ACAATCCCGAGAACCCTGAT+AGG 0.450787 8.3:-8809932 MS.gene57720:CDS
CCTATTTGGATAAAAGATCA+TGG 0.453160 8.3:-8809903 MS.gene57720:CDS
CTGAATCCGAATGCAGGATC+TGG 0.456933 8.3:-8811578 MS.gene57720:CDS
CATTCGGATTCAGTGTTGGT+GGG 0.459033 8.3:+8811588 None:intergenic
GTTTCTGTGGACGACATAAA+GGG 0.461542 8.3:-8809220 MS.gene57720:intron
AGAAAGAAAGAAAGAATGTC+GGG 0.484277 8.3:-8811629 None:intergenic
ACGTGACCAGATCCTGCATT+CGG 0.496584 8.3:+8811572 None:intergenic
TCAGGGTTCTCGGGATTGTA+GGG 0.497761 8.3:+8809936 None:intergenic
AAGGGCCTATCAGGGTTCTC+GGG 0.511101 8.3:+8809927 None:intergenic
GCATTCGGATTCAGTGTTGG+TGG 0.513869 8.3:+8811587 None:intergenic
GGTTCACCATTAAGGAAGTC+GGG 0.517776 8.3:+8809957 None:intergenic
AGTAAAGGTGTTTCATCTGT+CGG 0.519087 8.3:-8809526 MS.gene57720:CDS
AACTGTTTCACAAGCTCTGG+AGG 0.526203 8.3:+8807966 None:intergenic
GATGCAACAGCACCGCAGCT+TGG 0.538985 8.3:+8809251 None:intergenic
TGTATCTCACAGTCCAGCCA+TGG 0.544793 8.3:+8807597 None:intergenic
GCATCCATCATTTGTTTCTG+TGG 0.547944 8.3:-8809233 MS.gene57720:CDS
TCGTCCACAGAAACAAATGA+TGG 0.552834 8.3:+8809229 None:intergenic
GCTCTCAATGCCTACATCGT+CGG 0.557731 8.3:-8811536 MS.gene57720:CDS
CTGGACTGTGAGATACAGCC+CGG 0.557853 8.3:-8807591 MS.gene57720:CDS
TCTGGTCACGTTGAAAAGCT+TGG 0.558124 8.3:-8811560 MS.gene57720:CDS
GGGTTCACCATTAAGGAAGT+CGG 0.562199 8.3:+8809956 None:intergenic
AGCTGTGAAAACTGCAGATG+AGG 0.562425 8.3:-8807558 MS.gene57720:CDS
ATTAGGAGAACCGACGATGT+AGG 0.563292 8.3:+8811526 None:intergenic
TGACCGCAGATTTAGCACTA+AGG 0.564771 8.3:+8807934 None:intergenic
TGCAGCTGCTGGTTATTATG+TGG 0.565842 8.3:-8809985 MS.gene57720:CDS
ATATTTCCTAAAGTTTCCCA+TGG 0.570812 8.3:-8807614 MS.gene57720:CDS
CCTGCATTCGGATTCAGTGT+TGG 0.576766 8.3:+8811584 None:intergenic
CCAACACTGAATCCGAATGC+AGG 0.579836 8.3:-8811584 MS.gene57720:CDS
CACATCAAGACTTACTGGAC+TGG 0.583292 8.3:-8807535 MS.gene57720:CDS
GTATCTCACAGTCCAGCCAT+GGG 0.606707 8.3:+8807598 None:intergenic
TTATTATATTAACAGGACAA+AGG 0.624184 8.3:-8809586 MS.gene57720:intron
AAATAGGCAAGGGCCTATCA+GGG 0.626194 8.3:+8809919 None:intergenic
ATCCAGACTTATCCAAGCTG+CGG 0.640963 8.3:-8809263 MS.gene57720:CDS
TAAAGGTGTTTCATCTGTCG+GGG 0.641381 8.3:-8809524 MS.gene57720:CDS
TTGGATAAAAGATCATGGAA+CGG 0.646563 8.3:-8809898 MS.gene57720:intron
AATCCTTAGTGCTAAATCTG+CGG 0.663773 8.3:-8807937 MS.gene57720:intron
ATCAGAGACAAGAAGAACAG+CGG 0.690019 8.3:+8811496 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTTTTTTTTTTTT+TGG - chr8.3:8811359-8811378 MS.gene57720:intron 0.0%
!! ATAATTGTAATTTATAAAGT+CGG - chr8.3:8808839-8808858 MS.gene57720:intron 10.0%
!! TTAATTAAGCAAAAAAAAAA+AGG + chr8.3:8807712-8807731 None:intergenic 10.0%
!! AAAAAAAAGGTGAATAAAAA+TGG + chr8.3:8807699-8807718 None:intergenic 15.0%
!! AGTTAATAAAGTAAAATGAA+TGG + chr8.3:8807796-8807815 None:intergenic 15.0%
!! ATACCTATTATTATATTAAC+AGG - chr8.3:8809535-8809554 MS.gene57720:CDS 15.0%
!! TAAGAAAAATGTATAAATGA+AGG + chr8.3:8810441-8810460 None:intergenic 15.0%
!! TCTTAAAGACTTAAAAATTA+TGG - chr8.3:8807862-8807881 MS.gene57720:intron 15.0%
!!! ATTCTAATCTTATCTTTTTT+TGG - chr8.3:8811261-8811280 MS.gene57720:intron 15.0%
!!! ATTTTCTTAAAAAAACTAGA+AGG - chr8.3:8808811-8808830 MS.gene57720:intron 15.0%
!!! TACAATTAAATGCATATTTT+TGG + chr8.3:8810624-8810643 None:intergenic 15.0%
!!! TGACTAGATTTTTAATTTAT+AGG - chr8.3:8808908-8808927 MS.gene57720:intron 15.0%
!!! TTTTCTTAAAAAAACTAGAA+GGG - chr8.3:8808812-8808831 MS.gene57720:intron 15.0%
!!! TTTTTAATTTGTACTTTTTG+TGG - chr8.3:8808441-8808460 MS.gene57720:intron 15.0%
!! AAAGTGGAATATATTGAATT+GGG + chr8.3:8810354-8810373 None:intergenic 20.0%
!! AAATTGATTGTAATTACAAC+TGG + chr8.3:8810047-8810066 None:intergenic 20.0%
!! AAGATTAGAATATCAAAAGA+TGG + chr8.3:8811252-8811271 None:intergenic 20.0%
!! AATAAATATAACCAATCATG+AGG + chr8.3:8810718-8810737 None:intergenic 20.0%
!! AATTAGCTATACCTTAAATT+TGG + chr8.3:8808576-8808595 None:intergenic 20.0%
!! ATCATTTAGTAATGAGAAAT+TGG + chr8.3:8808786-8808805 None:intergenic 20.0%
!! CTTAAAAATTATGGTTAACT+AGG - chr8.3:8807871-8807890 MS.gene57720:intron 20.0%
!! GATAATGATAATATGATACA+GGG - chr8.3:8808183-8808202 MS.gene57720:intron 20.0%
!! GTTAATTATTGTTCTTATTC+AGG - chr8.3:8811090-8811109 MS.gene57720:intron 20.0%
!! TATATACTAGTGCAAAAATT+AGG - chr8.3:8810765-8810784 MS.gene57720:intron 20.0%
!! TGTCCTGTTAATATAATAAT+AGG + chr8.3:8809541-8809560 None:intergenic 20.0%
!! TTATTATATTAACAGGACAA+AGG - chr8.3:8809542-8809561 MS.gene57720:CDS 20.0%
!!! ACTTACTGAAACTTTAATTT+TGG - chr8.3:8809359-8809378 MS.gene57720:intron 20.0%
!!! AGTTCTTATTTAACAATTCT+TGG - chr8.3:8809255-8809274 MS.gene57720:CDS 20.0%
!!! ATTTTTTGTACAACCAAATT+TGG + chr8.3:8808129-8808148 None:intergenic 20.0%
!!! GTATCAAATTTAGTCATTTT+TGG - chr8.3:8808612-8808631 MS.gene57720:intron 20.0%
!!! TGATAATGATAATATGATAC+AGG - chr8.3:8808182-8808201 MS.gene57720:intron 20.0%
!!! TTTTCTCTTTTACTTATCAA+AGG + chr8.3:8809298-8809317 None:intergenic 20.0%
!!! TTTTTTTACTTTTTCCTGTT+AGG - chr8.3:8808687-8808706 MS.gene57720:intron 20.0%
! AAGAATATAAATGCAGTATG+AGG + chr8.3:8808412-8808431 None:intergenic 25.0%
! AAGTAACAAAAATCAGCATT+TGG - chr8.3:8808487-8808506 MS.gene57720:intron 25.0%
! AATTCATATGTTCTCACTAA+CGG + chr8.3:8808320-8808339 None:intergenic 25.0%
! ACAGTTTATCTAACTTATGT+CGG - chr8.3:8810930-8810949 MS.gene57720:intron 25.0%
! AGAATATAAATGCAGTATGA+GGG + chr8.3:8808411-8808430 None:intergenic 25.0%
! AGTAACAAAAATCAGCATTT+GGG - chr8.3:8808488-8808507 MS.gene57720:intron 25.0%
! ATGAAACATGTAGATTGTAT+TGG + chr8.3:8809024-8809043 None:intergenic 25.0%
! ATGAGAAATTATAAGCGAAA+AGG + chr8.3:8808978-8808997 None:intergenic 25.0%
! ATTATCATTATCAACTCTAG+TGG + chr8.3:8808175-8808194 None:intergenic 25.0%
! ATTGAAGCCATAAAAAGTAA+AGG - chr8.3:8809587-8809606 MS.gene57720:intron 25.0%
! ATTTGAACACGTTAAAATTG+TGG + chr8.3:8807839-8807858 None:intergenic 25.0%
! CAAAGTGGAATATATTGAAT+TGG + chr8.3:8810355-8810374 None:intergenic 25.0%
! CTTATAATTTCTCATGTTGT+TGG - chr8.3:8808983-8809002 MS.gene57720:intron 25.0%
! GTTGTATTGAAAAGTGAAAT+GGG + chr8.3:8810306-8810325 None:intergenic 25.0%
! TAATGCCAATAGAATATGTA+AGG + chr8.3:8810219-8810238 None:intergenic 25.0%
! TAGTACCTTACATATTCTAT+TGG - chr8.3:8810211-8810230 MS.gene57720:intron 25.0%
! TAGTGTTTAAAAAGGTGAAA+AGG + chr8.3:8811449-8811468 None:intergenic 25.0%
! TGAGTTACTAGTGTTTAAAA+AGG + chr8.3:8811457-8811476 None:intergenic 25.0%
! TGTTGTATTGAAAAGTGAAA+TGG + chr8.3:8810307-8810326 None:intergenic 25.0%
! TTCAGTAAGTATACAAAAAC+TGG + chr8.3:8809349-8809368 None:intergenic 25.0%
! TTGTATAAGATGCAGTTTAA+TGG - chr8.3:8810805-8810824 MS.gene57720:intron 25.0%
!! ACTTTTTATGGCTTCAATTA+TGG + chr8.3:8809585-8809604 None:intergenic 25.0%
!! ATGAGAAAATATGATCGTTT+TGG + chr8.3:8810156-8810175 None:intergenic 25.0%
!! ATTTAAGGTATAGCTAATTC+TGG - chr8.3:8808577-8808596 MS.gene57720:intron 25.0%
!! CAAATATTTTCGTACAGAAA+AGG + chr8.3:8809719-8809738 None:intergenic 25.0%
!! CGTAGAATTATTTGGTTTAT+TGG - chr8.3:8808943-8808962 MS.gene57720:intron 25.0%
!! CTTTTTATGGCTTCAATTAT+GGG + chr8.3:8809584-8809603 None:intergenic 25.0%
!! TAATTTGCGTATTGTTTGTA+TGG - chr8.3:8809948-8809967 MS.gene57720:CDS 25.0%
!! TTAATGTTTGAAATGCAACT+AGG - chr8.3:8809770-8809789 MS.gene57720:intron 25.0%
!! TTAATTTTCTCTTTCGTTTG+TGG - chr8.3:8811219-8811238 MS.gene57720:intron 25.0%
!!! GGACAATATTTTTTTGCAAA+TGG + chr8.3:8810271-8810290 None:intergenic 25.0%
!!! TGAAACACCTTTACTTTTTA+TGG + chr8.3:8809597-8809616 None:intergenic 25.0%
!!! TTTACTTTTTGTATCAGCTA+AGG - chr8.3:8809823-8809842 MS.gene57720:intron 25.0%
AAAAATAAGCCAATCCAAAC+AGG - chr8.3:8808385-8808404 MS.gene57720:intron 30.0%
AAAATATTTGAGCTCGTCAT+AGG - chr8.3:8809729-8809748 MS.gene57720:intron 30.0%
AGGTACTAGTACCAAATAAT+AGG + chr8.3:8810199-8810218 None:intergenic 30.0%
AGGTGATTAATTACTTTCAG+TGG + chr8.3:8808062-8808081 None:intergenic 30.0%
ATAAGAAATAAGTAGAGGTG+TGG + chr8.3:8809686-8809705 None:intergenic 30.0%
ATATGTGTGAAACGAGTAAA+TGG - chr8.3:8810461-8810480 MS.gene57720:intron 30.0%
ATATTTCCTAAAGTTTCCCA+TGG - chr8.3:8811514-8811533 MS.gene57720:CDS 30.0%
ATCATGTGAACACATTACAA+TGG + chr8.3:8809075-8809094 None:intergenic 30.0%
ATTTATCCCTTGCAATAACA+AGG + chr8.3:8808654-8808673 None:intergenic 30.0%
CCTATTTGGATAAAAGATCA+TGG - chr8.3:8809225-8809244 MS.gene57720:CDS 30.0%
CTACTATAATAAGTGCAAAG+TGG + chr8.3:8810370-8810389 None:intergenic 30.0%
CTCGGTATTAATTGATTACT+TGG - chr8.3:8810956-8810975 MS.gene57720:intron 30.0%
CTGTTAGAATATGAACATCT+CGG + chr8.3:8811071-8811090 None:intergenic 30.0%
GACGATAAATATGGTCATTA+AGG + chr8.3:8810120-8810139 None:intergenic 30.0%
GATGCATAAGAAATAAGTAG+AGG + chr8.3:8809663-8809682 None:intergenic 30.0%
GATTAATTACTTTCAGTGGA+TGG + chr8.3:8808058-8808077 None:intergenic 30.0%
GCATTTGTCGTAGAATTATT+TGG - chr8.3:8808935-8808954 MS.gene57720:intron 30.0%
GTGGTTAACAAGATTCAAAT+AGG + chr8.3:8808082-8808101 None:intergenic 30.0%
TAATGACCATATTTATCGTC+AGG - chr8.3:8810120-8810139 MS.gene57720:intron 30.0%
TACCAAATAATAGGCAACTA+TGG + chr8.3:8810190-8810209 None:intergenic 30.0%
TACTATTCATAAGCTTGTCA+AGG - chr8.3:8808258-8808277 MS.gene57720:intron 30.0%
TAGAATTCAAGAAACCTAAC+AGG + chr8.3:8808704-8808723 None:intergenic 30.0%
TTAATTGTAACATACAGCAG+AGG - chr8.3:8810635-8810654 MS.gene57720:intron 30.0%
TTGGATAAAAGATCATGGAA+CGG - chr8.3:8809230-8809249 MS.gene57720:CDS 30.0%
! AAATTGGATTAGAGAGAACA+TGG + chr8.3:8808770-8808789 None:intergenic 30.0%
! ATCTTTTATCCAAATAGGCA+AGG + chr8.3:8809223-8809242 None:intergenic 30.0%
! CATTTAACTTATGCTTCTAG+AGG - chr8.3:8810834-8810853 MS.gene57720:intron 30.0%
! CCATGATCTTTTATCCAAAT+AGG + chr8.3:8809228-8809247 None:intergenic 30.0%
! GACATTCCATTTTCTATACT+TGG - chr8.3:8811117-8811136 MS.gene57720:intron 30.0%
! TAAGAAATAAGTAGAGGTGT+GGG + chr8.3:8809685-8809704 None:intergenic 30.0%
! TCTTTTATCCAAATAGGCAA+GGG + chr8.3:8809222-8809241 None:intergenic 30.0%
! TGCATGTTTTTCATAGTTCA+TGG - chr8.3:8807995-8808014 MS.gene57720:CDS 30.0%
! TTGTTATTGCAAGGGATAAA+TGG - chr8.3:8808653-8808672 MS.gene57720:intron 30.0%
!! ATATGCTTAATTTGTCTTGC+AGG - chr8.3:8808540-8808559 MS.gene57720:intron 30.0%
!! TTTGGCAACAACTTTTTAAG+TGG + chr8.3:8808101-8808120 None:intergenic 30.0%
!!! CTTGTATGTTTTCAGGTAAT+AGG - chr8.3:8810081-8810100 MS.gene57720:intron 30.0%
!!! TGAAATGGGTCAACTTTTTT+GGG + chr8.3:8810292-8810311 None:intergenic 30.0%
AACAAAAGACGCAAAGACAA+TGG + chr8.3:8810910-8810929 None:intergenic 35.0%
AAGCATATGCAGTTAGTAGA+AGG + chr8.3:8808528-8808547 None:intergenic 35.0%
AATAGGTATGCATCAGAGAA+TGG + chr8.3:8809524-8809543 None:intergenic 35.0%
AATATGATACAGGGTCTCTT+TGG - chr8.3:8808192-8808211 MS.gene57720:intron 35.0%
AATCCTTAGTGCTAAATCTG+CGG - chr8.3:8811191-8811210 MS.gene57720:intron 35.0%
ACAAAAGACGCAAAGACAAT+GGG + chr8.3:8810909-8810928 None:intergenic 35.0%
AGGCTAATTACATGCTACAT+AGG - chr8.3:8810854-8810873 MS.gene57720:intron 35.0%
ATCAAAACCACCAATAAAGG+TGG + chr8.3:8809452-8809471 None:intergenic 35.0%
ATCATTATCAACTCTAGTGG+TGG + chr8.3:8808172-8808191 None:intergenic 35.0%
ATGGCTCAGTTAATCTAGAA+CGG - chr8.3:8810480-8810499 MS.gene57720:intron 35.0%
CAACCAAATTTGGAGAACTT+TGG + chr8.3:8808119-8808138 None:intergenic 35.0%
CACCATAGTTGCCTATTATT+TGG - chr8.3:8810185-8810204 MS.gene57720:intron 35.0%
CACGTTAAAATTGTGGTTGA+TGG + chr8.3:8807832-8807851 None:intergenic 35.0%
CTTCTTGTCTCTGATGTTTA+TGG - chr8.3:8807640-8807659 MS.gene57720:intron 35.0%
GCAAATGGCTCAGTTATTAT+GGG + chr8.3:8810256-8810275 None:intergenic 35.0%
TAAGTGCTCTTGTTAAGCAT+TGG + chr8.3:8810401-8810420 None:intergenic 35.0%
TATGAAAAACATGCACTCCT+CGG + chr8.3:8807990-8808009 None:intergenic 35.0%
TCAAAACCACCAATAAAGGT+GGG + chr8.3:8809451-8809470 None:intergenic 35.0%
TCAGCTCCAAGTATAGAAAA+TGG + chr8.3:8811126-8811145 None:intergenic 35.0%
TCTAACTTATGTCGGTAACT+CGG - chr8.3:8810938-8810957 MS.gene57720:intron 35.0%
TGCAAATGGCTCAGTTATTA+TGG + chr8.3:8810257-8810276 None:intergenic 35.0%
TTGCCAAAGTTCTCCAAATT+TGG - chr8.3:8808113-8808132 MS.gene57720:intron 35.0%
TTGTTTGTTCACTGCTTTGA+AGG - chr8.3:8809103-8809122 MS.gene57720:intron 35.0%
! ATGCAGTTAGTAGAAGGTTT+TGG + chr8.3:8808522-8808541 None:intergenic 35.0%
! ATTTTCGTACAGAAAAGGTG+TGG + chr8.3:8809714-8809733 None:intergenic 35.0%
! CAACATGCTTGTATGTTTTC+AGG - chr8.3:8810074-8810093 MS.gene57720:intron 35.0%
! CATTAGCCTGACGATAAATA+TGG + chr8.3:8810129-8810148 None:intergenic 35.0%
! GATATGAAGCGCCAAATTTA+AGG - chr8.3:8808562-8808581 MS.gene57720:intron 35.0%
! TAAGATGCAGTTTAATGGAC+TGG - chr8.3:8810810-8810829 MS.gene57720:intron 35.0%
!! AAGATGCAGTTTAATGGACT+GGG - chr8.3:8810811-8810830 MS.gene57720:intron 35.0%
!! AGTAAAGGTGTTTCATCTGT+CGG - chr8.3:8809602-8809621 MS.gene57720:intron 35.0%
!! CAGAGGTATTTCAAACACAA+TGG - chr8.3:8810652-8810671 MS.gene57720:intron 35.0%
!! CATGTACCTTGTTATTGCAA+GGG - chr8.3:8808645-8808664 MS.gene57720:intron 35.0%
!! TTTTCGTACAGAAAAGGTGT+GGG + chr8.3:8809713-8809732 None:intergenic 35.0%
!!! CCTTTATTGGTGGTTTTGAT+CGG - chr8.3:8809452-8809471 MS.gene57720:intron 35.0%
!!! GTGAAATGGGTCAACTTTTT+TGG + chr8.3:8810293-8810312 None:intergenic 35.0%
AAGCTAAACACACGCATTGT+TGG - chr8.3:8811385-8811404 MS.gene57720:intron 40.0%
AGAGAAGAGAAGAGAAGAGA+AGG + chr8.3:8807668-8807687 None:intergenic 40.0%
ATCAGAGACAAGAAGAACAG+CGG + chr8.3:8807635-8807654 None:intergenic 40.0%
ATGGCTCAGTTATTATGGGA+CGG + chr8.3:8810252-8810271 None:intergenic 40.0%
CCGATCAAAACCACCAATAA+AGG + chr8.3:8809455-8809474 None:intergenic 40.0%
GATTGTAGGGTTCACCATTA+AGG + chr8.3:8809182-8809201 None:intergenic 40.0%
GTTTCTGTGGACGACATAAA+GGG - chr8.3:8809908-8809927 MS.gene57720:CDS 40.0%
TCAAACTGTTTCACAAGCTC+TGG + chr8.3:8811168-8811187 None:intergenic 40.0%
TCGTCCACAGAAACAAATGA+TGG + chr8.3:8809902-8809921 None:intergenic 40.0%
! AGAACAGCGGATTTGGAATT+AGG + chr8.3:8807622-8807641 None:intergenic 40.0%
! CTCAGTTAATCTAGAACGGA+GGG - chr8.3:8810484-8810503 MS.gene57720:intron 40.0%
! TCCTAGTGTTTTACATGCGT+CGG + chr8.3:8807957-8807976 None:intergenic 40.0%
! TGTTTCTGTGGACGACATAA+AGG - chr8.3:8809907-8809926 MS.gene57720:CDS 40.0%
!! GCATCCATCATTTGTTTCTG+TGG - chr8.3:8809895-8809914 MS.gene57720:intron 40.0%
!! GCATGTACCTTGTTATTGCA+AGG - chr8.3:8808644-8808663 MS.gene57720:intron 40.0%
!! GTAAAGGTGTTTCATCTGTC+GGG - chr8.3:8809603-8809622 MS.gene57720:intron 40.0%
!! TAAAGGTGTTTCATCTGTCG+GGG - chr8.3:8809604-8809623 MS.gene57720:intron 40.0%
AAACCACCAATAAAGGTGGG+AGG + chr8.3:8809448-8809467 None:intergenic 45.0%
AAAGCAGTGCTCACATAAGC+AGG + chr8.3:8808730-8808749 None:intergenic 45.0%
AAATAGGCAAGGGCCTATCA+GGG + chr8.3:8809212-8809231 None:intergenic 45.0%
ACTAGGACACAGTTAATCCG+AGG - chr8.3:8807970-8807989 MS.gene57720:CDS 45.0%
ACTTGGCTGCACGACAAAAA+TGG + chr8.3:8811485-8811504 None:intergenic 45.0%
AGCTGTGAAAACTGCAGATG+AGG - chr8.3:8811570-8811589 MS.gene57720:CDS 45.0%
AGTTCGTGGTCTATGAAGCA+CGG - chr8.3:8807898-8807917 MS.gene57720:intron 45.0%
ATCCAGACTTATCCAAGCTG+CGG - chr8.3:8809865-8809884 MS.gene57720:intron 45.0%
ATTAGGAGAACCGACGATGT+AGG + chr8.3:8807605-8807624 None:intergenic 45.0%
CAATAAAGGTGGGAGGACAA+TGG + chr8.3:8809441-8809460 None:intergenic 45.0%
CACATCAAGACTTACTGGAC+TGG - chr8.3:8811593-8811612 MS.gene57720:CDS 45.0%
CATTGTCCTCCCACCTTTAT+TGG - chr8.3:8809439-8809458 MS.gene57720:intron 45.0%
CTCAGTTATTATGGGACGGA+GGG + chr8.3:8810248-8810267 None:intergenic 45.0%
CTTGGCTGCACGACAAAAAT+GGG + chr8.3:8811484-8811503 None:intergenic 45.0%
GACGCAAAGACAATGGGAAA+AGG + chr8.3:8810903-8810922 None:intergenic 45.0%
GGGTTCACCATTAAGGAAGT+CGG + chr8.3:8809175-8809194 None:intergenic 45.0%
GGTTCACCATTAAGGAAGTC+GGG + chr8.3:8809174-8809193 None:intergenic 45.0%
GTACTTAGCTGCCTCATGAT+TGG - chr8.3:8810704-8810723 MS.gene57720:intron 45.0%
GTTAACTAGGTCCAAGTTCG+TGG - chr8.3:8807884-8807903 MS.gene57720:intron 45.0%
GTTGTTCCCGACTTCCTTAA+TGG - chr8.3:8809165-8809184 MS.gene57720:intron 45.0%
TCTGGTCACGTTGAAAAGCT+TGG - chr8.3:8807568-8807587 MS.gene57720:CDS 45.0%
TGACCGCAGATTTAGCACTA+AGG + chr8.3:8811197-8811216 None:intergenic 45.0%
TGAGGCACATCAAGACTTAC+TGG - chr8.3:8811588-8811607 MS.gene57720:CDS 45.0%
TGCTTCATAGACCACGAACT+TGG + chr8.3:8807898-8807917 None:intergenic 45.0%
TTCACAGCTTCTGCATCTTC+CGG + chr8.3:8811559-8811578 None:intergenic 45.0%
TTCCTAAAGTTTCCCATGGC+TGG - chr8.3:8811518-8811537 MS.gene57720:CDS 45.0%
! AACTGTTTCACAAGCTCTGG+AGG + chr8.3:8811165-8811184 None:intergenic 45.0%
! GACAAGAAGAACAGCGGATT+TGG + chr8.3:8807629-8807648 None:intergenic 45.0%
! GCTCAGTTAATCTAGAACGG+AGG - chr8.3:8810483-8810502 MS.gene57720:intron 45.0%
! TGCAGCTGCTGGTTATTATG+TGG - chr8.3:8809143-8809162 MS.gene57720:intron 45.0%
!! CATTCGGATTCAGTGTTGGT+GGG + chr8.3:8807543-8807562 None:intergenic 45.0%
ACAATCCCGAGAACCCTGAT+AGG - chr8.3:8809196-8809215 MS.gene57720:intron 50.0%
ACGTGACCAGATCCTGCATT+CGG + chr8.3:8807559-8807578 None:intergenic 50.0%
ATCAGGGTTCTCGGGATTGT+AGG + chr8.3:8809196-8809215 None:intergenic 50.0%
ATGCAGTATGAGGGCCTGTT+TGG + chr8.3:8808402-8808421 None:intergenic 50.0%
CAAATAGGCAAGGGCCTATC+AGG + chr8.3:8809213-8809232 None:intergenic 50.0%
CCAACACTGAATCCGAATGC+AGG - chr8.3:8807544-8807563 MS.gene57720:CDS 50.0%
CCTGCATTCGGATTCAGTGT+TGG + chr8.3:8807547-8807566 None:intergenic 50.0%
CTGAATCCGAATGCAGGATC+TGG - chr8.3:8807550-8807569 MS.gene57720:CDS 50.0%
CTGATAGGCCCTTGCCTATT+TGG - chr8.3:8809211-8809230 MS.gene57720:intron 50.0%
GCCGACGCATGTAAAACACT+AGG - chr8.3:8807953-8807972 MS.gene57720:CDS 50.0%
GCTCAGTTATTATGGGACGG+AGG + chr8.3:8810249-8810268 None:intergenic 50.0%
GCTCTCAATGCCTACATCGT+CGG - chr8.3:8807592-8807611 MS.gene57720:CDS 50.0%
GTATCTCACAGTCCAGCCAT+GGG + chr8.3:8811533-8811552 None:intergenic 50.0%
GTATGAGGGCCTGTTTGGAT+TGG + chr8.3:8808397-8808416 None:intergenic 50.0%
GTCCAGCCATGGGAAACTTT+AGG + chr8.3:8811523-8811542 None:intergenic 50.0%
TCACAGCTTCTGCATCTTCC+GGG + chr8.3:8811558-8811577 None:intergenic 50.0%
TCAGGGTTCTCGGGATTGTA+GGG + chr8.3:8809195-8809214 None:intergenic 50.0%
TGTATCTCACAGTCCAGCCA+TGG + chr8.3:8811534-8811553 None:intergenic 50.0%
TGTCCTCCCACCTTTATTGG+TGG - chr8.3:8809442-8809461 MS.gene57720:intron 50.0%
! GCATTCGGATTCAGTGTTGG+TGG + chr8.3:8807544-8807563 None:intergenic 50.0%
AAGGGCCTATCAGGGTTCTC+GGG + chr8.3:8809204-8809223 None:intergenic 55.0%
CAAGGGCCTATCAGGGTTCT+CGG + chr8.3:8809205-8809224 None:intergenic 55.0%
CACCGCAGCTTGGATAAGTC+TGG + chr8.3:8809870-8809889 None:intergenic 55.0%
CTGGACTGTGAGATACAGCC+CGG - chr8.3:8811537-8811556 MS.gene57720:CDS 55.0%
GCAGACAAAGTTGCAGCTGC+TGG - chr8.3:8809132-8809151 MS.gene57720:intron 55.0%
GGTCTATGAAGCACGGACAC+CGG - chr8.3:8807905-8807924 MS.gene57720:intron 55.0%
! CGGGGCTGCTGGATTTTGTT+GGG - chr8.3:8809622-8809641 MS.gene57720:intron 55.0%
! GCTGCTGGATTTTGTTGGGG+TGG - chr8.3:8809626-8809645 MS.gene57720:intron 55.0%
! GGGGCTGCTGGATTTTGTTG+GGG - chr8.3:8809623-8809642 MS.gene57720:intron 55.0%
! TCGGGGCTGCTGGATTTTGT+TGG - chr8.3:8809621-8809640 MS.gene57720:intron 55.0%
!! GTTTTACATGCGTCGGCGTC+CGG + chr8.3:8807950-8807969 None:intergenic 55.0%
ACACCACACACCGACGACAC+CGG - chr8.3:8807928-8807947 MS.gene57720:intron 60.0%
GATGCAACAGCACCGCAGCT+TGG + chr8.3:8809880-8809899 None:intergenic 60.0%
GTTTCATCTGTCGGGGCTGC+TGG - chr8.3:8809611-8809630 MS.gene57720:intron 60.0%
TGTCGTCGGTGTGTGGTGTC+CGG + chr8.3:8807927-8807946 None:intergenic 60.0%
!! CGTCCGGTGTCGTCGGTGTG+TGG + chr8.3:8807934-8807953 None:intergenic 70.0%
!! GCGTCGGCGTCCGGTGTCGT+CGG + chr8.3:8807941-8807960 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 8807514 8811636 8807514 ID=MS.gene57720
chr8.3 mRNA 8807514 8811636 8807514 ID=MS.gene57720.t1;Parent=MS.gene57720
chr8.3 exon 8811489 8811636 8811489 ID=MS.gene57720.t1.exon1;Parent=MS.gene57720.t1
chr8.3 CDS 8811489 8811636 8811489 ID=cds.MS.gene57720.t1;Parent=MS.gene57720.t1
chr8.3 exon 8810567 8810588 8810567 ID=MS.gene57720.t1.exon2;Parent=MS.gene57720.t1
chr8.3 CDS 8810567 8810588 8810567 ID=cds.MS.gene57720.t1;Parent=MS.gene57720.t1
chr8.3 exon 8809899 8810025 8809899 ID=MS.gene57720.t1.exon3;Parent=MS.gene57720.t1
chr8.3 CDS 8809899 8810025 8809899 ID=cds.MS.gene57720.t1;Parent=MS.gene57720.t1
chr8.3 exon 8809503 8809593 8809503 ID=MS.gene57720.t1.exon4;Parent=MS.gene57720.t1
chr8.3 CDS 8809503 8809593 8809503 ID=cds.MS.gene57720.t1;Parent=MS.gene57720.t1
chr8.3 exon 8809221 8809310 8809221 ID=MS.gene57720.t1.exon5;Parent=MS.gene57720.t1
chr8.3 CDS 8809221 8809310 8809221 ID=cds.MS.gene57720.t1;Parent=MS.gene57720.t1
chr8.3 exon 8807938 8808038 8807938 ID=MS.gene57720.t1.exon6;Parent=MS.gene57720.t1
chr8.3 CDS 8807938 8808038 8807938 ID=cds.MS.gene57720.t1;Parent=MS.gene57720.t1
chr8.3 exon 8807514 8807651 8807514 ID=MS.gene57720.t1.exon7;Parent=MS.gene57720.t1
chr8.3 CDS 8807514 8807651 8807514 ID=cds.MS.gene57720.t1;Parent=MS.gene57720.t1
Gene Sequence

>MS.gene57720

ATGTCGGGAGCAGAATGTTGCGCAAACCCACCAACACTGAATCCGAATGCAGGATCTGGTCACGTTGAAAAGCTTGGTGCTCTCAATGCCTACATCGTCGGTTCTCCTAATTCCAAATCCGCTGTTCTTCTTGTCTCTGATGTTTATGGTACCTTCTCTTCTCTTCTCTTCTCTAATTCTTTCCATTTTTATTCACCTTTTTTTTTTTGCTTAATTAAGTGCTTAATTCTCTTCAATAGTAGATGATTACTGTGTATATCAAGTGTCAAAACTCATTAACCATTCATTTTACTTTATTAACTACAAGTTTTGACACCATCAACCACAATTTTAACGTGTTCAAATCTATCTTAAAGACTTAAAAATTATGGTTAACTAGGTCCAAGTTCGTGGTCTATGAAGCACGGACACCGGACACCACACACCGACGACACCGGACGCCGACGCATGTAAAACACTAGGACACAGTTAATCCGAGGAGTGCATGTTTTTCATAGTTCATGGTTATTGACTTTCAACACATTTTTAGTATATCTACTAACCATCCACTGAAAGTAATTAATCACCTATTTGAATCTTGTTAACCACTTAAAAAGTTGTTGCCAAAGTTCTCCAAATTTGGTTGTACAAAAAATCATTTCTTTATGATTTATTACCACCACTAGAGTTGATAATGATAATATGATACAGGGTCTCTTTGGATTGACTAATTTTTTAGCTTATGCAAATAAAAAAGTTTTTATGTACTATTCATAAGCTTGTCAAGGTAGTTTATAAAAAAATAGCTTATATAAATACAATTTCCGTTAGTGAGAACATATGAATTAACATATAAGTTTATTTATTTGCATAAGCTATTTTTCATAAGCTCAAAAATAAGCCAATCCAAACAGGCCCTCATACTGCATTTATATTCTTGATATTTATTTTTTAATTTGTACTTTTTGTGGCTATGAATTTCATGTTCATCTGAAAGTAACAAAAATCAGCATTTGGGTATACTGACCAAAACCTTCTACTAACTGCATATGCTTAATTTGTCTTGCAGGATATGAAGCGCCAAATTTAAGGTATAGCTAATTCTGGTGTCTATTTTCTGTATCAAATTTAGTCATTTTTGGTGTTTATTTGCATGTACCTTGTTATTGCAAGGGATAAATGGAGTTTTTTTTTTTTTTTTACTTTTTCCTGTTAGGTTTCTTGAATTCTAGTGCCTGCTTATGTGAGCACTGCTTTTTTTTTCTTTCTTTTTTCCATGTTCTCTCTAATCCAATTTCTCATTACTAAATGATCATTTATTTTCTTAAAAAAACTAGAAGGGACATATAATTGTAATTTATAAAGTCGGTCAAGAAAGTAATGCTGCATGCTGCTGTACATAATATGTTAGATTTTGACTAGATTTTTAATTTATAGGCAATGCATTTGTCGTAGAATTATTTGGTTTATTGGTAATATTTACCTTTTCGCTTATAATTTCTCATGTTGTTGGTATATGATTATAGTACCAATACAATCTACATGTTTCATTCTACTCTCTCTATATTGTGATTTGTGTCCATTGTAATGTGTTCACATGATAAGTAATATTGTTTGTTCACTGCTTTGAAGGAAGCTTGCAGACAAAGTTGCAGCTGCTGGTTATTATGTGGTTGTTCCCGACTTCCTTAATGGTGAACCCTACAATCCCGAGAACCCTGATAGGCCCTTGCCTATTTGGATAAAAGATCATGGAACGGTTAGTTCTTATTTAACAATTCTTGGTTGTTTATGATTTTTTTCCTTTGATAAGTAAAAGAGAAAATATTTTTGTTTTTTCTAATAAATTGAATCCAGTTTTTGTATACTTACTGAAACTTTAATTTTGGAATGTGAATCACTAAATTCAGATGTCTTGTCTTAGTATTTTTTTTTATCGCTTCAGCCATTGTCCTCCCACCTTTATTGGTGGTTTTGATCGGTTGATTGAACATCACAAATTGTCTCAAACTAAATGTACAAATTGTGCCATTCTCTGATGCATACCTATTATTATATTAACAGGACAAAGGTTTTGAAGATGCAAAACCCATAATTGAAGCCATAAAAAGTAAAGGTGTTTCATCTGTCGGGGCTGCTGGATTTTGTTGGGGTGGTGAGTGCTAATACTCTACTTATTTCTTATGCATCCCACACCTCTACTTATTTCTTATGCATCCCACACCTTTTCTGTACGAAAATATTTGAGCTCGTCATAGGTTTACTTATCAGTCAGATTTAATGTTTGAAATGCAACTAGGCTAAAAATTGAACTCACAGAATGTACTATATTTACTTTTTGTATCAGCTAAGGTTGTTACTGAACTAGCAAAATCCAGACTTATCCAAGCTGCGGTGCTGTTGCATCCATCATTTGTTTCTGTGGACGACATAAAGGGTATGTATTTTTTCTTCTTAATTTGCGTATTGTTTGTATGGAGAATGTCTCTAAAATCTTCTGCTGAAAGTAACTACTAAATTTATGTTGTGACTTGTTAAAAAAAGAAGCTTACCAGTTGTAATTACAATCAATTTAAGCATACAACATGCTTGTATGTTTTCAGGTAATAGGCATACTGTCACTTCCTTAATGACCATATTTATCGTCAGGCTAATGTCTTCCAAAACGATCATATTTTCTCATGCTGATCTACACCATAGTTGCCTATTATTTGGTACTAGTACCTTACATATTCTATTGGCATTAATTACTCCCTCCGTCCCATAATAACTGAGCCATTTGCAAAAAAATATTGTCCCAAAAAAGTTGACCCATTTCACTTTTCAATACAACATTAATTAATACTACTTTCATCAGTCCCAATTCAATATATTCCACTTTGCACTTATTATAGTAGAAAATGCACCAATGCTTAACAAGAGCACTTAAAACTTTTTTTCTCTCTCCTTCATTTATACATTTTTCTTAATATGTGTGAAACGAGTAAATGGCTCAGTTAATCTAGAACGGAGGGAGTATCATAATCATTTAATTTAGTGCATGTTCAGATTAACTAATTTTAAAAATACTGTAGAGAGATGTTTTAGCTGATTTTTTTTTTTTTTTTTTGTATAAAAATTTAGCTAAACCAAAAATATGCATTTAATTGTAACATACAGCAGAGGTATTTCAAACACAATGGACTGTGCTTGAAATAGCAGCTTAATATTTGTACTTAGCTGCCTCATGATTGGTTATATTTATTTATATGTTAAATTAATATACAATTGATTATATACTAGTGCAAAAATTAGGAATTTGTTTGTTGCTTATTGTATAAGATGCAGTTTAATGGACTGGGCATTTAACTTATGCTTCTAGAGGCTAATTACATGCTACATAGGTAGTTTACGTTGACATTTCTTTTCCTTTTCCCATTGTCTTTGCGTCTTTTGTTACAGTTTATCTAACTTATGTCGGTAACTCGGTATTAATTGATTACTTGGAGCTTTTTTCATGTAAACTCGAGTCATTTTTCACTTTGCAATGATTGAATAAAGACGAAGCAAAGTAGTAGAAACATATTTCTTAACTGCCGAGATGTTCATATTCTAACAGTTAATTATTGTTCTTATTCAGGTGTTGACATTCCATTTTCTATACTTGGAGCTGAGATTGACAGACTTTCTCCTCCAGAGCTTGTGAAACAGTTTGAAGAAATCCTTAGTGCTAAATCTGCGGTCAGATTAATTTTCTCTTTCGTTTGTGGTTATCTGCCATCTTTTGATATTCTAATCTTATCTTTTTTTGGTTCACACGCATGCCATCTTTTGATATTCTAATCTTATCTTTTTTTGGTTCACACGCATGCATACATGCACACACATATTTTTTTTTTTTTTTTTTTGGAAGAAGCTAAACACACGCATTGTTGGTTACAAGAATATATAATTAGTCAAATTGTTTAACTTATCCTTTTCACCTTTTTAAACACTAGTAACTCATGAACCCATTTTTGTCGTGCAGCCAAGTTTTGTGAAAATATTTCCTAAAGTTTCCCATGGCTGGACTGTGAGATACAGCCCGGAAGATGCAGAAGCTGTGAAAACTGCAGATGAGGCACATCAAGACTTACTGGACTGGTTTGCTAAACATCTCAAGTGA

Protein sequence

>MS.gene57720.t1

MSGAECCANPPTLNPNAGSGHVEKLGALNAYIVGSPNSKSAVLLVSDVYGYEAPNLRKLADKVAAAGYYVVVPDFLNGEPYNPENPDRPLPIWIKDHGTDKGFEDAKPIIEAIKSKGVSSVGAAGFCWGAKVVTELAKSRLIQAAVLLHPSFVSVDDIKGVDIPFSILGAEIDRLSPPELVKQFEEILSAKSAPSFVKIFPKVSHGWTVRYSPEDAEAVKTADEAHQDLLDWFAKHLK