Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62293.t1 | XP_013460594.1 | 98.1 | 162 | 3 | 0 | 8 | 169 | 103 | 264 | 2.10E-87 | 331.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62293.t1 | Q8LE52 | 75.9 | 162 | 39 | 0 | 8 | 169 | 97 | 258 | 6.1e-72 | 271.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62293.t1 | Q4JR85 | 98.1 | 162 | 3 | 0 | 8 | 169 | 103 | 264 | 1.5e-87 | 331.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050593 | MS.gene62293 | 0.821704 | 3.50E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene62293 | 0.80594 | 1.05E-49 | -1.69E-46 |
| MS.gene055564 | MS.gene62293 | 0.818973 | 1.48E-52 | -1.69E-46 |
| MS.gene058700 | MS.gene62293 | 0.807524 | 4.85E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene62293 | 0.801898 | 7.25E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene62293 | 0.810385 | 1.18E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62293.t1 | MTR_3g066060 | 98.148 | 162 | 3 | 0 | 8 | 169 | 103 | 264 | 6.91e-115 | 326 |
| MS.gene62293.t1 | MTR_1g115500 | 57.407 | 162 | 69 | 0 | 8 | 169 | 51 | 212 | 5.70e-67 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62293.t1 | AT5G16710 | 75.926 | 162 | 39 | 0 | 8 | 169 | 97 | 258 | 1.79e-91 | 267 |
| MS.gene62293.t1 | AT1G75270 | 61.350 | 163 | 62 | 1 | 8 | 169 | 51 | 213 | 1.90e-70 | 212 |
| MS.gene62293.t1 | AT1G19570 | 58.385 | 161 | 66 | 1 | 8 | 167 | 51 | 211 | 1.19e-62 | 192 |
| MS.gene62293.t1 | AT1G19550 | 48.447 | 161 | 60 | 1 | 7 | 167 | 14 | 151 | 2.99e-47 | 151 |
Find 37 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATCTTCTCTACATTTAT+TGG | 0.132703 | 3.2:-61265104 | MS.gene62293:CDS |
| ATGTCTTTCCCATTGATAAA+AGG | 0.296522 | 3.2:+61264473 | None:intergenic |
| CTTTGGGACATTATAAGAAA+TGG | 0.310068 | 3.2:-61264400 | MS.gene62293:CDS |
| GCCTGTTCTGTTCCATCATT+GGG | 0.317203 | 3.2:+61265062 | None:intergenic |
| CTTTCCATCAAAATTTATTA+CGG | 0.320003 | 3.2:+61265785 | None:intergenic |
| TGCCTGTTCTGTTCCATCAT+TGG | 0.329262 | 3.2:+61265061 | None:intergenic |
| TATCATCAACCCTCTACTTT+AGG | 0.351222 | 3.2:+61263550 | None:intergenic |
| TACCATTTGGAGATTGCTTT+GGG | 0.358598 | 3.2:-61264416 | MS.gene62293:CDS |
| TACCTTCAGGACTGATTTCA+AGG | 0.389717 | 3.2:+61265814 | None:intergenic |
| TTTCCATCAAAATTTATTAC+GGG | 0.394965 | 3.2:+61265786 | None:intergenic |
| ATACCATTTGGAGATTGCTT+TGG | 0.401508 | 3.2:-61264417 | MS.gene62293:CDS |
| TTCCTTGAGGTAATCGTTGA+AGG | 0.431943 | 3.2:+61265019 | None:intergenic |
| ATAGCTTTGGTCCTAGTGAT+AGG | 0.433953 | 3.2:+61264438 | None:intergenic |
| ATTACGGGAACTTTACCTTC+AGG | 0.438595 | 3.2:+61265801 | None:intergenic |
| TCCCAATGATGGAACAGAAC+AGG | 0.440171 | 3.2:-61265063 | MS.gene62293:CDS |
| TCAGGTGGTGTCACCAATGG+TGG | 0.440607 | 3.2:+61265708 | None:intergenic |
| ATCTCCAAATGGTATAGCTT+TGG | 0.443085 | 3.2:+61264425 | None:intergenic |
| AGGACCAAAGCTATACCATT+TGG | 0.449238 | 3.2:-61264429 | MS.gene62293:CDS |
| TTTGGGACATTATAAGAAAT+GGG | 0.450474 | 3.2:-61264399 | MS.gene62293:CDS |
| GGTGTCACCAATGGTGGGCT+AGG | 0.458979 | 3.2:+61265714 | None:intergenic |
| ATTGGTGACACCACCTGAAA+AGG | 0.468553 | 3.2:-61265703 | MS.gene62293:CDS |
| CAACCTTCAATGACATCATC+CGG | 0.486528 | 3.2:+61263577 | None:intergenic |
| AAGAGCAAAGATCCCAATGA+TGG | 0.512786 | 3.2:-61265074 | MS.gene62293:CDS |
| GTCCCAAAGCAATCTCCAAA+TGG | 0.525825 | 3.2:+61264414 | None:intergenic |
| AGATTTAATCACACAAACAT+TGG | 0.534999 | 3.2:-61265748 | MS.gene62293:CDS |
| CATCAACACACGTGCACAGC+CGG | 0.542223 | 3.2:-61263596 | MS.gene62293:CDS |
| CAGGTGGTGTCACCAATGGT+GGG | 0.551034 | 3.2:+61265709 | None:intergenic |
| CGGATGATGTCATTGAAGGT+TGG | 0.553799 | 3.2:-61263576 | MS.gene62293:CDS |
| GAAGTATCCTAGCCCACCAT+TGG | 0.558980 | 3.2:-61265721 | MS.gene62293:CDS |
| CTCCTTCAACGATTACCTCA+AGG | 0.559546 | 3.2:-61265021 | MS.gene62293:CDS |
| AAAGTTCAGCGAGTCAGGTA+CGG | 0.564552 | 3.2:+61264376 | None:intergenic |
| TTCCTTGAAATCAGTCCTGA+AGG | 0.565919 | 3.2:-61265816 | MS.gene62293:CDS |
| CAGCCGGATGATGTCATTGA+AGG | 0.588388 | 3.2:-61263580 | MS.gene62293:CDS |
| AGGTTGGCGTCCTAAAGTAG+AGG | 0.619348 | 3.2:-61263560 | MS.gene62293:CDS |
| GGTTGGCGTCCTAAAGTAGA+GGG | 0.649275 | 3.2:-61263559 | MS.gene62293:CDS |
| TCTGCGGCTGACCTATCACT+AGG | 0.664557 | 3.2:-61264449 | MS.gene62293:CDS |
| CAATGGGAAAGACATCTCTG+CGG | 0.754649 | 3.2:-61264465 | MS.gene62293:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAATATAAAAATAAAG+AGG | + | chr3.2:61264291-61264310 | None:intergenic | 10.0% |
| !!! | TCTTTATTTTTATATTTACA+TGG | - | chr3.2:61264290-61264309 | MS.gene62293:intron | 10.0% |
| !!! | TTTAAAATTTCAGTATTTTA+GGG | - | chr3.2:61264539-61264558 | MS.gene62293:intron | 10.0% |
| !!! | TTTTAAAATTTCAGTATTTT+AGG | - | chr3.2:61264538-61264557 | MS.gene62293:intron | 10.0% |
| !!! | TTTTAATTTTAATACATTCA+GGG | - | chr3.2:61264221-61264240 | MS.gene62293:intron | 10.0% |
| !!! | TTTTTAATTTTAATACATTC+AGG | - | chr3.2:61264220-61264239 | MS.gene62293:intron | 10.0% |
| !!! | TTTTTTTTTTGAAAAATACA+TGG | - | chr3.2:61263886-61263905 | MS.gene62293:intron | 10.0% |
| !! | AAAATTCAAAATTGCAAAAA+TGG | + | chr3.2:61265480-61265499 | None:intergenic | 15.0% |
| !! | AAATTCAAAATTGCAAAAAT+GGG | + | chr3.2:61265479-61265498 | None:intergenic | 15.0% |
| !! | AGATGTTACAAAATATTAAA+CGG | - | chr3.2:61264670-61264689 | MS.gene62293:intron | 15.0% |
| !! | TTCTATTTATATAACTTTGA+GGG | - | chr3.2:61264882-61264901 | MS.gene62293:intron | 15.0% |
| !! | TTGTAAAGTTTATGAATAAT+TGG | - | chr3.2:61264768-61264787 | MS.gene62293:intron | 15.0% |
| !!! | TTAAAATTTCAGTATTTTAG+GGG | - | chr3.2:61264540-61264559 | MS.gene62293:intron | 15.0% |
| !!! | TTATATAAATAGAAGTGTTT+TGG | + | chr3.2:61264876-61264895 | None:intergenic | 15.0% |
| !!! | TTGTAATTTTGATATATTCA+AGG | + | chr3.2:61264058-61264077 | None:intergenic | 15.0% |
| !! | AAAATAAAGAGGAATAAAGA+TGG | + | chr3.2:61264280-61264299 | None:intergenic | 20.0% |
| !! | AATATGATAAATGTTAAGTG+AGG | + | chr3.2:61265164-61265183 | None:intergenic | 20.0% |
| !! | AGAAAAAAACAGATTTACAA+AGG | + | chr3.2:61265427-61265446 | None:intergenic | 20.0% |
| !! | AGTGAAAATGATTTATCAAT+AGG | - | chr3.2:61265338-61265357 | MS.gene62293:intron | 20.0% |
| !! | ATGTTACAAAATATTAAACG+GGG | - | chr3.2:61264672-61264691 | MS.gene62293:intron | 20.0% |
| !! | CAAATAGTTTACAAAATTTG+CGG | - | chr3.2:61265269-61265288 | MS.gene62293:intron | 20.0% |
| !! | CTTCTATTTATATAACTTTG+AGG | - | chr3.2:61264881-61264900 | MS.gene62293:intron | 20.0% |
| !! | CTTTCCATCAAAATTTATTA+CGG | + | chr3.2:61263695-61263714 | None:intergenic | 20.0% |
| !! | GATGTTACAAAATATTAAAC+GGG | - | chr3.2:61264671-61264690 | MS.gene62293:intron | 20.0% |
| !! | GGTTAAAAAATTTATACGAA+AGG | + | chr3.2:61264957-61264976 | None:intergenic | 20.0% |
| !! | GTGAAAATGATTTATCAATA+GGG | - | chr3.2:61265339-61265358 | MS.gene62293:intron | 20.0% |
| !! | TTTCCATCAAAATTTATTAC+GGG | + | chr3.2:61263694-61263713 | None:intergenic | 20.0% |
| !!! | AATAAATTTTGATGGAAAGT+GGG | - | chr3.2:61263696-61263715 | MS.gene62293:intron | 20.0% |
| !!! | CATTATTTTTCGTTTACATT+CGG | + | chr3.2:61265652-61265671 | None:intergenic | 20.0% |
| !!! | TAATAAATTTTGATGGAAAG+TGG | - | chr3.2:61263695-61263714 | MS.gene62293:intron | 20.0% |
| ! | AAACAAAGGAAATTTCATCA+AGG | + | chr3.2:61265798-61265817 | None:intergenic | 25.0% |
| ! | AAGATCTTCTCTACATTTAT+TGG | - | chr3.2:61264373-61264392 | MS.gene62293:CDS | 25.0% |
| ! | ACACTACAAGAAAAGTTATA+GGG | + | chr3.2:61264616-61264635 | None:intergenic | 25.0% |
| ! | ACATCTTATGTATATACAAG+AGG | + | chr3.2:61264656-61264675 | None:intergenic | 25.0% |
| ! | AGATTTAATCACACAAACAT+TGG | - | chr3.2:61263729-61263748 | MS.gene62293:intron | 25.0% |
| ! | ATGAAACTGCATCATAAATA+CGG | + | chr3.2:61265244-61265263 | None:intergenic | 25.0% |
| ! | ATTACATATGAGACAAGTAA+CGG | + | chr3.2:61265772-61265791 | None:intergenic | 25.0% |
| ! | CAACAAAACAAGTTATTACA+AGG | + | chr3.2:61263634-61263653 | None:intergenic | 25.0% |
| ! | GCAAACTGTAAAATAAACAA+AGG | + | chr3.2:61265812-61265831 | None:intergenic | 25.0% |
| ! | TCTAATAATGTTGAACTTAC+AGG | - | chr3.2:61265836-61265855 | MS.gene62293:intron | 25.0% |
| ! | TGAAAAGAAAAAATTTGCAC+AGG | + | chr3.2:61264978-61264997 | None:intergenic | 25.0% |
| ! | TTATACATTTCCTTGTCATT+TGG | - | chr3.2:61263817-61263836 | MS.gene62293:intron | 25.0% |
| !! | CATATTCTTGTACTTTTAGA+CGG | - | chr3.2:61265178-61265197 | MS.gene62293:intron | 25.0% |
| !! | TTCTTTCGTTAGCAATTTTA+TGG | + | chr3.2:61264183-61264202 | None:intergenic | 25.0% |
| !! | TTTGGGACATTATAAGAAAT+GGG | - | chr3.2:61265078-61265097 | MS.gene62293:CDS | 25.0% |
| !!! | CTTGTAATAACTTGTTTTGT+TGG | - | chr3.2:61263632-61263651 | MS.gene62293:intron | 25.0% |
| !!! | GCAAATTTTTTCTTTTCACA+GGG | - | chr3.2:61264980-61264999 | MS.gene62293:intron | 25.0% |
| !!! | GCTCTAAATTCAAAAGTTTT+TGG | - | chr3.2:61265388-61265407 | MS.gene62293:intron | 25.0% |
| !!! | TGCAAATTTTTTCTTTTCAC+AGG | - | chr3.2:61264979-61264998 | MS.gene62293:intron | 25.0% |
| AAATGATAGACAAATCCAGA+AGG | + | chr3.2:61264928-61264947 | None:intergenic | 30.0% | |
| AGTAGTAGGGAAAAACATAA+CGG | + | chr3.2:61263968-61263987 | None:intergenic | 30.0% | |
| ATAGCTGAGACAAAAATAGA+TGG | + | chr3.2:61264503-61264522 | None:intergenic | 30.0% | |
| ATGATAAATGTTAAGTGAGG+AGG | + | chr3.2:61265161-61265180 | None:intergenic | 30.0% | |
| ATGTCTTTCCCATTGATAAA+AGG | + | chr3.2:61265007-61265026 | None:intergenic | 30.0% | |
| CAAATTATCTCCAAATGACA+AGG | + | chr3.2:61263830-61263849 | None:intergenic | 30.0% | |
| CACACTACAAGAAAAGTTAT+AGG | + | chr3.2:61264617-61264636 | None:intergenic | 30.0% | |
| CTTGTGTCATACTATTTGTA+AGG | + | chr3.2:61265549-61265568 | None:intergenic | 30.0% | |
| TGAAACTGCATCATAAATAC+GGG | + | chr3.2:61265243-61265262 | None:intergenic | 30.0% | |
| TTAGAAGAAACTCCAAATTC+AGG | + | chr3.2:61265368-61265387 | None:intergenic | 30.0% | |
| ! | ATTTGTAAGGAAAAAGTGTG+AGG | + | chr3.2:61265536-61265555 | None:intergenic | 30.0% |
| ! | CATGTGATTTTGTCTATAGT+GGG | - | chr3.2:61264347-61264366 | MS.gene62293:intron | 30.0% |
| ! | CTTGTCATTTGGAGATAATT+TGG | - | chr3.2:61263828-61263847 | MS.gene62293:intron | 30.0% |
| ! | GTTCCCGTAATAAATTTTGA+TGG | - | chr3.2:61263688-61263707 | MS.gene62293:intron | 30.0% |
| ! | TTTTCTTCATATGTTCGAAG+AGG | - | chr3.2:61265441-61265460 | MS.gene62293:intron | 30.0% |
| !! | AAAATTGCAAAAATGGGCTA+GGG | + | chr3.2:61265473-61265492 | None:intergenic | 30.0% |
| !! | CTTTGGGACATTATAAGAAA+TGG | - | chr3.2:61265077-61265096 | MS.gene62293:CDS | 30.0% |
| !!! | AAGTTTTTGGTAATGTGCTT+TGG | - | chr3.2:61265401-61265420 | MS.gene62293:intron | 30.0% |
| !!! | ATAACTTGTTTTGTTGGTTC+AGG | - | chr3.2:61263638-61263657 | MS.gene62293:intron | 30.0% |
| !!! | CTTTTTGAAGTCTTACTTGA+AGG | - | chr3.2:61265120-61265139 | MS.gene62293:intron | 30.0% |
| AAAATCTGACATGCAGTAGT+AGG | + | chr3.2:61263982-61264001 | None:intergenic | 35.0% | |
| AAATCTGACATGCAGTAGTA+GGG | + | chr3.2:61263981-61264000 | None:intergenic | 35.0% | |
| ACCAAGGAAAAATGCATTCA+TGG | + | chr3.2:61264087-61264106 | None:intergenic | 35.0% | |
| ACTACTCAAATGTTTCCGTA+AGG | - | chr3.2:61265505-61265524 | MS.gene62293:intron | 35.0% | |
| ATACCATTTGGAGATTGCTT+TGG | - | chr3.2:61265060-61265079 | MS.gene62293:CDS | 35.0% | |
| ATCTCCAAATGGTATAGCTT+TGG | + | chr3.2:61265055-61265074 | None:intergenic | 35.0% | |
| CTACTCAAATGTTTCCGTAA+GGG | - | chr3.2:61265506-61265525 | MS.gene62293:intron | 35.0% | |
| GTAGTAGGGAAAAACATAAC+GGG | + | chr3.2:61263967-61263986 | None:intergenic | 35.0% | |
| GTGACATCTGATAGATTCAA+AGG | + | chr3.2:61264029-61264048 | None:intergenic | 35.0% | |
| TACCATTTGGAGATTGCTTT+GGG | - | chr3.2:61265061-61265080 | MS.gene62293:CDS | 35.0% | |
| TACTCAAATGTTTCCGTAAG+GGG | - | chr3.2:61265507-61265526 | MS.gene62293:intron | 35.0% | |
| TGTCTATGCTTAAAGATCAC+AGG | - | chr3.2:61265309-61265328 | MS.gene62293:intron | 35.0% | |
| TTCAAGAACCAAATTGACCA+AGG | + | chr3.2:61264103-61264122 | None:intergenic | 35.0% | |
| TTCGGTAATTGCACAAAAGT+TGG | + | chr3.2:61265634-61265653 | None:intergenic | 35.0% | |
| ! | ACTTACAGGAAATTTTCTCG+AGG | - | chr3.2:61265850-61265869 | MS.gene62293:intron | 35.0% |
| ! | AGAGTCATACATTTTCCTTG+AGG | + | chr3.2:61264474-61264493 | None:intergenic | 35.0% |
| ! | CAAAATTGCAAAAATGGGCT+AGG | + | chr3.2:61265474-61265493 | None:intergenic | 35.0% |
| ! | CTTACAGGAAATTTTCTCGA+GGG | - | chr3.2:61265851-61265870 | MS.gene62293:intron | 35.0% |
| ! | CTTTTCCTGCATTATTGTCA+TGG | - | chr3.2:61264589-61264608 | MS.gene62293:intron | 35.0% |
| ! | GCATGTGATTTTGTCTATAG+TGG | - | chr3.2:61264346-61264365 | MS.gene62293:intron | 35.0% |
| ! | GCATTTTTCCTTGGTCAATT+TGG | - | chr3.2:61264092-61264111 | MS.gene62293:intron | 35.0% |
| ! | TCCATGAATGCATTTTTCCT+TGG | - | chr3.2:61264083-61264102 | MS.gene62293:intron | 35.0% |
| ! | TTTTCTTATCTCGATCCTTC+TGG | - | chr3.2:61264910-61264929 | MS.gene62293:intron | 35.0% |
| !! | AGTTGGTATTTTACCAGCTA+CGG | + | chr3.2:61265617-61265636 | None:intergenic | 35.0% |
| !! | TAGAAAACGTTGATGACTTG+TGG | + | chr3.2:61263592-61263611 | None:intergenic | 35.0% |
| AACAGATCATCTAGGGATCA+GGG | + | chr3.2:61265740-61265759 | None:intergenic | 40.0% | |
| AAGAGCAAAGATCCCAATGA+TGG | - | chr3.2:61264403-61264422 | MS.gene62293:CDS | 40.0% | |
| ACACAGACAACAGATCATCT+AGG | + | chr3.2:61265748-61265767 | None:intergenic | 40.0% | |
| AGGACCAAAGCTATACCATT+TGG | - | chr3.2:61265048-61265067 | MS.gene62293:CDS | 40.0% | |
| ATTACGGGAACTTTACCTTC+AGG | + | chr3.2:61263679-61263698 | None:intergenic | 40.0% | |
| CAACCTTCAATGACATCATC+CGG | + | chr3.2:61265903-61265922 | None:intergenic | 40.0% | |
| CAATCGGTATTTGCACAGAA+GGG | + | chr3.2:61265572-61265591 | None:intergenic | 40.0% | |
| CACAGACAACAGATCATCTA+GGG | + | chr3.2:61265747-61265766 | None:intergenic | 40.0% | |
| CCAACAACTAGTGAAAAGGA+GGG | + | chr3.2:61265716-61265735 | None:intergenic | 40.0% | |
| GACACCGTATGACACAATTA+GGG | - | chr3.2:61264253-61264272 | MS.gene62293:intron | 40.0% | |
| GCTAACGAAAGAAACTCACA+TGG | - | chr3.2:61264190-61264209 | MS.gene62293:intron | 40.0% | |
| TCAATAGGGAGACCTGAATT+TGG | - | chr3.2:61265353-61265372 | MS.gene62293:intron | 40.0% | |
| TGACACCGTATGACACAATT+AGG | - | chr3.2:61264252-61264271 | MS.gene62293:intron | 40.0% | |
| TGGTCCCTAATTGTGTCATA+CGG | + | chr3.2:61264260-61264279 | None:intergenic | 40.0% | |
| TTCAAAAAGTTCAGCGAGTC+AGG | + | chr3.2:61265109-61265128 | None:intergenic | 40.0% | |
| TTCCTTGAAATCAGTCCTGA+AGG | - | chr3.2:61263661-61263680 | MS.gene62293:intron | 40.0% | |
| TTCCTTGAGGTAATCGTTGA+AGG | + | chr3.2:61264461-61264480 | None:intergenic | 40.0% | |
| TTTGAGAACCAGACTGACTA+AGG | + | chr3.2:61264135-61264154 | None:intergenic | 40.0% | |
| ! | CACAGGGTCCTTTTATCAAT+GGG | - | chr3.2:61264996-61265015 | MS.gene62293:intron | 40.0% |
| ! | GTGCAAATACCGATTGCTAA+AGG | - | chr3.2:61265576-61265595 | MS.gene62293:intron | 40.0% |
| ! | TACCTTCAGGACTGATTTCA+AGG | + | chr3.2:61263666-61263685 | None:intergenic | 40.0% |
| ! | TCACAGGGTCCTTTTATCAA+TGG | - | chr3.2:61264995-61265014 | MS.gene62293:intron | 40.0% |
| ! | TGAAGCACTCCTTTAGCAAT+CGG | + | chr3.2:61265588-61265607 | None:intergenic | 40.0% |
| !! | AAACGTTGATGACTTGTGGT+CGG | + | chr3.2:61263588-61263607 | None:intergenic | 40.0% |
| !! | ATAGCTTTGGTCCTAGTGAT+AGG | + | chr3.2:61265042-61265061 | None:intergenic | 40.0% |
| AAAGTTCAGCGAGTCAGGTA+CGG | + | chr3.2:61265104-61265123 | None:intergenic | 45.0% | |
| ACAGATCATCTAGGGATCAG+GGG | + | chr3.2:61265739-61265758 | None:intergenic | 45.0% | |
| AGGGTCCATGACAATAATGC+AGG | + | chr3.2:61264597-61264616 | None:intergenic | 45.0% | |
| CAACAGATCATCTAGGGATC+AGG | + | chr3.2:61265741-61265760 | None:intergenic | 45.0% | |
| CAATGGGAAAGACATCTCTG+CGG | - | chr3.2:61265012-61265031 | MS.gene62293:intron | 45.0% | |
| CGGATGATGTCATTGAAGGT+TGG | - | chr3.2:61265901-61265920 | MS.gene62293:intron | 45.0% | |
| CTCCTTCAACGATTACCTCA+AGG | - | chr3.2:61264456-61264475 | MS.gene62293:CDS | 45.0% | |
| GCAATCGGTATTTGCACAGA+AGG | + | chr3.2:61265573-61265592 | None:intergenic | 45.0% | |
| GCAGGAAAAGATGTAATGCC+AGG | + | chr3.2:61264579-61264598 | None:intergenic | 45.0% | |
| GCCAACAACTAGTGAAAAGG+AGG | + | chr3.2:61265717-61265736 | None:intergenic | 45.0% | |
| GCCTGTTCTGTTCCATCATT+GGG | + | chr3.2:61264418-61264437 | None:intergenic | 45.0% | |
| GTCCCAAAGCAATCTCCAAA+TGG | + | chr3.2:61265066-61265085 | None:intergenic | 45.0% | |
| TGCCTGTTCTGTTCCATCAT+TGG | + | chr3.2:61264419-61264438 | None:intergenic | 45.0% | |
| TGCTTCATAACAACCGTAGC+TGG | - | chr3.2:61265601-61265620 | MS.gene62293:intron | 45.0% | |
| TGTGGTCGGTAAGTGAAACA+TGG | + | chr3.2:61263574-61263593 | None:intergenic | 45.0% | |
| ! | ATTGGTGACACCACCTGAAA+AGG | - | chr3.2:61263774-61263793 | MS.gene62293:intron | 45.0% |
| ! | CCCTCCTTTTCACTAGTTGT+TGG | - | chr3.2:61265713-61265732 | MS.gene62293:CDS | 45.0% |
| ! | TCCCAATGATGGAACAGAAC+AGG | - | chr3.2:61264414-61264433 | MS.gene62293:CDS | 45.0% |
| !!! | TTTTCAGGTGGTGTCACCAA+TGG | + | chr3.2:61263775-61263794 | None:intergenic | 45.0% |
| AAGGCTACAGCGTATGCTTC+TGG | - | chr3.2:61263793-61263812 | MS.gene62293:intron | 50.0% | |
| AAGTGTGAGGAAGCCCCTTA+CGG | + | chr3.2:61265523-61265542 | None:intergenic | 50.0% | |
| AGGTTGGCGTCCTAAAGTAG+AGG | - | chr3.2:61265917-61265936 | MS.gene62293:intron | 50.0% | |
| CAGCCGGATGATGTCATTGA+AGG | - | chr3.2:61265897-61265916 | MS.gene62293:intron | 50.0% | |
| GGGGCCAACAACTAGTGAAA+AGG | + | chr3.2:61265720-61265739 | None:intergenic | 50.0% | |
| GGTTGGCGTCCTAAAGTAGA+GGG | - | chr3.2:61265918-61265937 | MS.gene62293:intron | 50.0% | |
| GTATCTCGCCTTAGTCAGTC+TGG | - | chr3.2:61264124-61264143 | MS.gene62293:intron | 50.0% | |
| TGTAGTGTGCATCGCTTAGC+TGG | - | chr3.2:61264628-61264647 | MS.gene62293:intron | 50.0% | |
| ! | GAAGTATCCTAGCCCACCAT+TGG | - | chr3.2:61263756-61263775 | MS.gene62293:intron | 50.0% |
| ! | GCATACGCTGTAGCCTTTTC+AGG | + | chr3.2:61263790-61263809 | None:intergenic | 50.0% |
| !! | TACGCTGTAGCCTTTTCAGG+TGG | + | chr3.2:61263787-61263806 | None:intergenic | 50.0% |
| AGGGGTCTCAATCTCTGACC+TGG | - | chr3.2:61264558-61264577 | MS.gene62293:intron | 55.0% | |
| CATCAACACACGTGCACAGC+CGG | - | chr3.2:61265881-61265900 | MS.gene62293:intron | 55.0% | |
| TCTGCGGCTGACCTATCACT+AGG | - | chr3.2:61265028-61265047 | MS.gene62293:CDS | 55.0% | |
| !! | CAGGTGGTGTCACCAATGGT+GGG | + | chr3.2:61263771-61263790 | None:intergenic | 55.0% |
| !! | TCAGGTGGTGTCACCAATGG+TGG | + | chr3.2:61263772-61263791 | None:intergenic | 55.0% |
| !! | GGTGTCACCAATGGTGGGCT+AGG | + | chr3.2:61263766-61263785 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 61263555 | 61265944 | 61263555 | ID=MS.gene62293 |
| chr3.2 | mRNA | 61263555 | 61265944 | 61263555 | ID=MS.gene62293.t1;Parent=MS.gene62293 |
| chr3.2 | exon | 61265925 | 61265944 | 61265925 | ID=MS.gene62293.t1.exon1;Parent=MS.gene62293.t1 |
| chr3.2 | CDS | 61265925 | 61265944 | 61265925 | ID=cds.MS.gene62293.t1;Parent=MS.gene62293.t1 |
| chr3.2 | exon | 61265696 | 61265839 | 61265696 | ID=MS.gene62293.t1.exon2;Parent=MS.gene62293.t1 |
| chr3.2 | CDS | 61265696 | 61265839 | 61265696 | ID=cds.MS.gene62293.t1;Parent=MS.gene62293.t1 |
| chr3.2 | exon | 61265016 | 61265133 | 61265016 | ID=MS.gene62293.t1.exon3;Parent=MS.gene62293.t1 |
| chr3.2 | CDS | 61265016 | 61265133 | 61265016 | ID=cds.MS.gene62293.t1;Parent=MS.gene62293.t1 |
| chr3.2 | exon | 61264358 | 61264498 | 61264358 | ID=MS.gene62293.t1.exon4;Parent=MS.gene62293.t1 |
| chr3.2 | CDS | 61264358 | 61264498 | 61264358 | ID=cds.MS.gene62293.t1;Parent=MS.gene62293.t1 |
| chr3.2 | exon | 61263555 | 61263641 | 61263555 | ID=MS.gene62293.t1.exon5;Parent=MS.gene62293.t1 |
| chr3.2 | CDS | 61263555 | 61263641 | 61263555 | ID=cds.MS.gene62293.t1;Parent=MS.gene62293.t1 |
| Gene Sequence |
| Protein sequence |
