Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62653.t1 | XP_003631000.1 | 99 | 307 | 3 | 0 | 1 | 307 | 1 | 307 | 6.50E-172 | 613.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62653.t1 | Q9LHE5 | 72.3 | 310 | 81 | 3 | 1 | 306 | 1 | 309 | 1.4e-127 | 457.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62653.t1 | G7LBI9 | 99.0 | 307 | 3 | 0 | 1 | 307 | 1 | 307 | 4.7e-172 | 613.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050574 | MS.gene62653 | 0.82317 | 1.60E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene62653 | 0.834298 | 3.25E-56 | -1.69E-46 |
| MS.gene056091 | MS.gene62653 | 0.837811 | 4.17E-57 | -1.69E-46 |
| MS.gene056631 | MS.gene62653 | 0.802321 | 5.93E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene62653 | 0.848145 | 7.39E-60 | -1.69E-46 |
| MS.gene060830 | MS.gene62653 | 0.815019 | 1.15E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62653.t1 | MTR_8g106010 | 99.023 | 307 | 3 | 0 | 1 | 307 | 1 | 307 | 0.0 | 637 |
| MS.gene62653.t1 | MTR_8g106070 | 95.192 | 104 | 5 | 0 | 1 | 104 | 172 | 275 | 1.44e-69 | 218 |
| MS.gene62653.t1 | MTR_8g106050 | 94.737 | 76 | 4 | 0 | 102 | 177 | 17 | 92 | 1.65e-45 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62653.t1 | AT3G20000 | 72.903 | 310 | 79 | 4 | 1 | 306 | 1 | 309 | 1.35e-170 | 475 |
| MS.gene62653.t1 | AT1G50400 | 66.234 | 308 | 98 | 4 | 1 | 303 | 1 | 307 | 4.96e-147 | 416 |
| MS.gene62653.t1 | AT3G20000 | 74.370 | 238 | 59 | 2 | 70 | 306 | 2 | 238 | 5.81e-132 | 375 |
Find 71 sgRNAs with CRISPR-Local
Find 393 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGATTAAGAGAGAATTTC+TGG | 0.123252 | 4.2:-1040620 | None:intergenic |
| CGTTGGGTGGAGAGGTATTT+TGG | 0.132290 | 4.2:+1043557 | MS.gene62653:CDS |
| GAATTTCTGGTTAAGCATTT+TGG | 0.195036 | 4.2:-1040607 | None:intergenic |
| TCGCTACAACACTGATAAAA+TGG | 0.287276 | 4.2:+1043618 | MS.gene62653:CDS |
| AAAGACTACAAATTTGGATT+TGG | 0.302340 | 4.2:+1046278 | MS.gene62653:CDS |
| ATCTCTAACAATGGCGACTA+TGG | 0.308328 | 4.2:+1040333 | None:intergenic |
| CCAACTGCTAACTATGAATT+CGG | 0.367648 | 4.2:+1040813 | MS.gene62653:CDS |
| TTGTCGTCGGCGGTGGGAAT+CGG | 0.375328 | 4.2:-1040361 | None:intergenic |
| GCTAGGGGCAAGTTATATTC+AGG | 0.378150 | 4.2:+1041927 | MS.gene62653:CDS |
| GACCTTCTTGTCGTCGGCGG+TGG | 0.385851 | 4.2:-1040368 | None:intergenic |
| TACAGAACACAGTTTCAAAT+GGG | 0.420179 | 4.2:+1041892 | MS.gene62653:CDS |
| TTACAGAACACAGTTTCAAA+TGG | 0.437411 | 4.2:+1041891 | MS.gene62653:CDS |
| AGAGACGTCACTGCTAGCTT+TGG | 0.445106 | 4.2:+1044776 | MS.gene62653:CDS |
| TTTGGATTTGGTTTGACCGT+TGG | 0.447555 | 4.2:+1046290 | MS.gene62653:CDS |
| GTGACAAATCATTTATCGTT+GGG | 0.449646 | 4.2:+1043541 | MS.gene62653:CDS |
| ATGGGGAATGGAGCCTTGCT+AGG | 0.464451 | 4.2:+1041910 | MS.gene62653:CDS |
| ATGAAGTTCTTCGAAGGGAA+TGG | 0.465390 | 4.2:-1040425 | None:intergenic |
| ACCTTCTTGTCGTCGGCGGT+GGG | 0.475541 | 4.2:-1040367 | None:intergenic |
| CACTTTGAAAGCAAATGCTC+AGG | 0.486791 | 4.2:+1041323 | MS.gene62653:CDS |
| CAAAAGAACCATTCCAGTGC+TGG | 0.487484 | 4.2:-1044612 | None:intergenic |
| TGAAGTTCTTCGAAGGGAAT+GGG | 0.496501 | 4.2:-1040424 | None:intergenic |
| ACAGGACAAGTTGCCAGCAC+TGG | 0.498458 | 4.2:+1044599 | MS.gene62653:CDS |
| CTGATCGACCTTCTTGTCGT+CGG | 0.501398 | 4.2:-1040374 | None:intergenic |
| TGTGACAAATCATTTATCGT+TGG | 0.503304 | 4.2:+1043540 | MS.gene62653:CDS |
| TGGGGAATGGAGCCTTGCTA+GGG | 0.504773 | 4.2:+1041911 | MS.gene62653:CDS |
| GATGATTAACTTTGATTACA+AGG | 0.509596 | 4.2:+1041715 | MS.gene62653:CDS |
| GCTGGTCAGCATCGAAAGTC+CGG | 0.511836 | 4.2:+1043580 | MS.gene62653:CDS |
| CCGAATTCATAGTTAGCAGT+TGG | 0.512475 | 4.2:-1040813 | None:intergenic |
| GGGAATGGGACAAGGAAGGT+TGG | 0.514697 | 4.2:-1040410 | None:intergenic |
| ATCTGCATCCAGGTTGCCAC+AGG | 0.518788 | 4.2:+1044581 | MS.gene62653:intron |
| TGGAATCAACCTTTCCCCTA+AGG | 0.518820 | 4.2:-1046023 | None:intergenic |
| ATAGTGCCGCCTTAGGGGAA+AGG | 0.523846 | 4.2:+1046014 | MS.gene62653:intron |
| GAATTTCATTCTTTCTGCAG+AGG | 0.535381 | 4.2:+1046092 | MS.gene62653:CDS |
| TTTGATACTCAGTGTTTCGA+TGG | 0.538232 | 4.2:+1040746 | MS.gene62653:intron |
| AGCTCTAATTTATTCTCCAA+CGG | 0.548927 | 4.2:-1046306 | None:intergenic |
| TTGGGGAGAGCTATGACTGA+TGG | 0.555017 | 4.2:+1041258 | MS.gene62653:CDS |
| TCATTTATCGTTGGGTGGAG+AGG | 0.555729 | 4.2:+1043549 | MS.gene62653:CDS |
| TCGTCGGCGGTGGGAATCGG+TGG | 0.556917 | 4.2:-1040358 | None:intergenic |
| ACACAGTTTCAAATGGGGAA+TGG | 0.557932 | 4.2:+1041898 | MS.gene62653:CDS |
| AAAAGCAGCACAAACACCAT+TGG | 0.560296 | 4.2:-1046043 | None:intergenic |
| AGGGGAAAGGTTGATTCCAA+TGG | 0.561118 | 4.2:+1046027 | MS.gene62653:CDS |
| TGTTCAGAAGGTTTCTGAGA+AGG | 0.565720 | 4.2:+1044640 | MS.gene62653:CDS |
| TTGATACTCAGTGTTTCGAT+GGG | 0.565904 | 4.2:+1040747 | MS.gene62653:intron |
| ATCATCCCTTGCGACATATG+TGG | 0.567411 | 4.2:-1041698 | None:intergenic |
| ACAAGTTGCCAGCACTGGAA+TGG | 0.569505 | 4.2:+1044604 | MS.gene62653:CDS |
| TTTGGAGGAGAGGTTAAACA+TGG | 0.573440 | 4.2:+1046065 | MS.gene62653:CDS |
| AGAAATTCTCTCTTAATCAC+AGG | 0.575821 | 4.2:+1040622 | MS.gene62653:CDS |
| CAGCATCGAAAGTCCGGTGT+AGG | 0.581073 | 4.2:+1043586 | MS.gene62653:CDS |
| TCCCACCGCCGACGACAAGA+AGG | 0.581867 | 4.2:+1040366 | MS.gene62653:CDS |
| TTCGCGATGAAGTTCTTCGA+AGG | 0.585780 | 4.2:-1040431 | None:intergenic |
| AATATAACTTGCCCCTAGCA+AGG | 0.586184 | 4.2:-1041923 | None:intergenic |
| TTATGACTACATTCTCAGAC+AGG | 0.586877 | 4.2:+1044799 | MS.gene62653:CDS |
| GAACTTCATCGATCATCCTA+AGG | 0.592870 | 4.2:+1040839 | MS.gene62653:CDS |
| CGAAGGGAATGGGACAAGGA+AGG | 0.594895 | 4.2:-1040414 | None:intergenic |
| TCGCGATGAAGTTCTTCGAA+GGG | 0.595915 | 4.2:-1040430 | None:intergenic |
| ATCGACCTTCTTGTCGTCGG+CGG | 0.596681 | 4.2:-1040371 | None:intergenic |
| GGAGAGCTATGACTGATGGA+AGG | 0.601209 | 4.2:+1041262 | MS.gene62653:CDS |
| ACAAATCATTTATCGTTGGG+TGG | 0.604461 | 4.2:+1043544 | MS.gene62653:CDS |
| GATTCCTTCTCAGTCTGCTG+AGG | 0.606124 | 4.2:+1040779 | MS.gene62653:CDS |
| TCTTCGAAGGGAATGGGACA+AGG | 0.607908 | 4.2:-1040418 | None:intergenic |
| AGTGAGCCACATATGTCGCA+AGG | 0.608954 | 4.2:+1041692 | MS.gene62653:CDS |
| GAGAGCTATGACTGATGGAA+GGG | 0.610985 | 4.2:+1041263 | MS.gene62653:CDS |
| ATAACCTCAGCAGACTGAGA+AGG | 0.616639 | 4.2:-1040783 | None:intergenic |
| AGTGCTGGCAACTTGTCCTG+TGG | 0.616700 | 4.2:-1044597 | None:intergenic |
| GTGAGCCACATATGTCGCAA+GGG | 0.643410 | 4.2:+1041693 | MS.gene62653:CDS |
| AATCAACCTTTCCCCTAAGG+CGG | 0.646753 | 4.2:-1046020 | None:intergenic |
| GACTGAGAAGGAATCTCAGT+AGG | 0.652570 | 4.2:-1040771 | None:intergenic |
| GGGGAATGGAGCCTTGCTAG+GGG | 0.654668 | 4.2:+1041912 | MS.gene62653:CDS |
| ACAGAACACAGTTTCAAATG+GGG | 0.668900 | 4.2:+1041893 | MS.gene62653:CDS |
| TTGGAGGAGAGGTTAAACAT+GGG | 0.679861 | 4.2:+1046066 | MS.gene62653:CDS |
| GCGAGCAGCATAACCTACAC+CGG | 0.690277 | 4.2:-1043599 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAGATGAAA+AGG | - | chr4.2:1040873-1040892 | None:intergenic | 10.0% |
| !! | AAACAAATATTATTATATCA+AGG | + | chr4.2:1042409-1042428 | MS.gene62653:intron | 10.0% |
| !! | AACAAATATTATTATATCAA+GGG | + | chr4.2:1042410-1042429 | MS.gene62653:intron | 10.0% |
| !! | ATAAAATCTAAAAGATATAT+TGG | - | chr4.2:1041433-1041452 | None:intergenic | 10.0% |
| !! | TCTCATATATTAATATAAAA+GGG | - | chr4.2:1042601-1042620 | None:intergenic | 10.0% |
| !! | TTCTCATATATTAATATAAA+AGG | - | chr4.2:1042602-1042621 | None:intergenic | 10.0% |
| !!! | CCAATTAAAAATTTTAAAAT+AGG | - | chr4.2:1045689-1045708 | None:intergenic | 10.0% |
| !!! | CCTATTTTAAAATTTTTAAT+TGG | + | chr4.2:1045686-1045705 | MS.gene62653:intron | 10.0% |
| !!! | GATTTTTTTTTATTTAAAGA+TGG | + | chr4.2:1042099-1042118 | MS.gene62653:intron | 10.0% |
| !!! | TGATTATTTTAATTAGTATT+AGG | + | chr4.2:1042068-1042087 | MS.gene62653:intron | 10.0% |
| !!! | TTGAAATATTTAATTTCATT+TGG | + | chr4.2:1043185-1043204 | MS.gene62653:intron | 10.0% |
| !!! | TTTTTTGTTACAAAAATTTA+GGG | - | chr4.2:1043096-1043115 | None:intergenic | 10.0% |
| !! | ACAAATATTATTATATCAAG+GGG | + | chr4.2:1042411-1042430 | MS.gene62653:intron | 15.0% |
| !! | AGAAGAAGAAAAAATAAATA+TGG | - | chr4.2:1041975-1041994 | None:intergenic | 15.0% |
| !! | CTCATATATTAATATAAAAG+GGG | - | chr4.2:1042600-1042619 | None:intergenic | 15.0% |
| !! | TACATGAATATGAAATAATA+AGG | + | chr4.2:1044174-1044193 | MS.gene62653:intron | 15.0% |
| !! | TTATTAATATGAATAACTGA+TGG | + | chr4.2:1043274-1043293 | MS.gene62653:intron | 15.0% |
| !!! | AAATTCATTTTTAGTTTTCT+TGG | - | chr4.2:1044329-1044348 | None:intergenic | 15.0% |
| !!! | AGATAGAAATTTTTCAATAA+TGG | + | chr4.2:1042745-1042764 | MS.gene62653:intron | 15.0% |
| !!! | ATATACATTTTATGCTAAAA+AGG | - | chr4.2:1045273-1045292 | None:intergenic | 15.0% |
| !!! | CAAATAATACTTTAAGAAAA+TGG | + | chr4.2:1040946-1040965 | MS.gene62653:intron | 15.0% |
| !!! | CTTTTTTGTTACAAAAATTT+AGG | - | chr4.2:1043097-1043116 | None:intergenic | 15.0% |
| !!! | GCTTTTAAATTGAATAAAAT+CGG | - | chr4.2:1045957-1045976 | None:intergenic | 15.0% |
| !!! | TATTTTTTCTTCTTCTTTAA+GGG | + | chr4.2:1041979-1041998 | MS.gene62653:intron | 15.0% |
| !!! | TTATTTTTTCTTCTTCTTTA+AGG | + | chr4.2:1041978-1041997 | MS.gene62653:intron | 15.0% |
| !!! | TTTTTTTATTTTTGAGTGTA+CGG | + | chr4.2:1042226-1042245 | MS.gene62653:intron | 15.0% |
| !! | AAAAAAAAAGATGAAAAGGA+AGG | - | chr4.2:1040869-1040888 | None:intergenic | 20.0% |
| !! | AAAAGACTACAAATAACAAA+AGG | - | chr4.2:1041614-1041633 | None:intergenic | 20.0% |
| !! | AAAGACTACAAATAACAAAA+GGG | - | chr4.2:1041613-1041632 | None:intergenic | 20.0% |
| !! | AAATTAGATATATAAGCAGA+GGG | - | chr4.2:1043696-1043715 | None:intergenic | 20.0% |
| !! | AAGAAAAAAGACTACAAATT+TGG | + | chr4.2:1046272-1046291 | MS.gene62653:CDS | 20.0% |
| !! | AATTGGATAATATCTATTTC+AGG | + | chr4.2:1043422-1043441 | MS.gene62653:intron | 20.0% |
| !! | ACAATATTGAACTATAAAAC+AGG | - | chr4.2:1041854-1041873 | None:intergenic | 20.0% |
| !! | ACAGGATTATTATTAATATC+AGG | - | chr4.2:1045832-1045851 | None:intergenic | 20.0% |
| !! | ATTAACAAAGAAAGTCATTA+AGG | + | chr4.2:1042029-1042048 | MS.gene62653:intron | 20.0% |
| !! | ATTTCATGTGAGAAATAAAA+AGG | - | chr4.2:1044706-1044725 | None:intergenic | 20.0% |
| !! | CAAATATTATTATATCAAGG+GGG | + | chr4.2:1042412-1042431 | MS.gene62653:intron | 20.0% |
| !! | CAATATTGAACTATAAAACA+GGG | - | chr4.2:1041853-1041872 | None:intergenic | 20.0% |
| !! | CAGGATTATTATTAATATCA+GGG | - | chr4.2:1045831-1045850 | None:intergenic | 20.0% |
| !! | CTTTATTGAACTAATTTCTT+CGG | + | chr4.2:1041121-1041140 | MS.gene62653:intron | 20.0% |
| !! | TTGTTAGAATAAATACTCAA+GGG | + | chr4.2:1044423-1044442 | MS.gene62653:intron | 20.0% |
| !! | TTTGTTAGAATAAATACTCA+AGG | + | chr4.2:1044422-1044441 | MS.gene62653:intron | 20.0% |
| !!! | AAACGTTTTTAGAAAACATA+TGG | - | chr4.2:1045491-1045510 | None:intergenic | 20.0% |
| !!! | AACAACAAAGAGTTTTAAAA+AGG | - | chr4.2:1046130-1046149 | None:intergenic | 20.0% |
| !!! | AGTTCAATATTGTATTTTTC+AGG | + | chr4.2:1041861-1041880 | MS.gene62653:intron | 20.0% |
| !!! | CAATTTTTTCATGTTATCTA+GGG | + | chr4.2:1043369-1043388 | MS.gene62653:intron | 20.0% |
| !!! | CACCTTAAGTATTTTTAAAA+TGG | - | chr4.2:1042170-1042189 | None:intergenic | 20.0% |
| !!! | GTTCAATATTGTATTTTTCA+GGG | + | chr4.2:1041862-1041881 | MS.gene62653:intron | 20.0% |
| !!! | TAAATAGTCAAGAGTATTAT+AGG | - | chr4.2:1044382-1044401 | None:intergenic | 20.0% |
| !!! | TGTTGTGTTGATATTTTAAT+TGG | + | chr4.2:1043405-1043424 | MS.gene62653:intron | 20.0% |
| !!! | TTTAAAACTCTTTGTTGTTA+GGG | + | chr4.2:1046131-1046150 | MS.gene62653:intron | 20.0% |
| !!! | TTTTAAAACTCTTTGTTGTT+AGG | + | chr4.2:1046130-1046149 | MS.gene62653:intron | 20.0% |
| !!! | TTTTTAACTGAATAGTAGTT+TGG | + | chr4.2:1042807-1042826 | MS.gene62653:intron | 20.0% |
| ! | AAAAAATTGCCCATAACAAA+CGG | - | chr4.2:1043358-1043377 | None:intergenic | 25.0% |
| ! | AAAATAGGCATAAAAGAATC+TGG | - | chr4.2:1045674-1045693 | None:intergenic | 25.0% |
| ! | AAACAACTTGTGTAAAAAAC+AGG | + | chr4.2:1042493-1042512 | MS.gene62653:intron | 25.0% |
| ! | AAAGACTACAAATTTGGATT+TGG | + | chr4.2:1046278-1046297 | MS.gene62653:CDS | 25.0% |
| ! | AAATCGGTTAAATTTCATCA+CGG | - | chr4.2:1045941-1045960 | None:intergenic | 25.0% |
| ! | AACAACTTGTGTAAAAAACA+GGG | + | chr4.2:1042494-1042513 | MS.gene62653:intron | 25.0% |
| ! | AATTATGTCTAATGTAAGCA+TGG | - | chr4.2:1044886-1044905 | None:intergenic | 25.0% |
| ! | ACAAATGTTGAAATCAGATA+AGG | - | chr4.2:1045982-1046001 | None:intergenic | 25.0% |
| ! | ACATTGTTCTCATCTTATAT+GGG | + | chr4.2:1045016-1045035 | MS.gene62653:intron | 25.0% |
| ! | AGATAGTAATAAGTATGCAT+GGG | - | chr4.2:1043213-1043232 | None:intergenic | 25.0% |
| ! | ATAGATATTAAATACCATGC+GGG | + | chr4.2:1043884-1043903 | MS.gene62653:intron | 25.0% |
| ! | ATATGTGTATCCATTGAAAT+TGG | - | chr4.2:1045570-1045589 | None:intergenic | 25.0% |
| ! | CATAGATATTAAATACCATG+CGG | + | chr4.2:1043883-1043902 | MS.gene62653:intron | 25.0% |
| ! | CCATTGAAATTGGAAAAATT+AGG | - | chr4.2:1045560-1045579 | None:intergenic | 25.0% |
| ! | GAAATTAGATATATAAGCAG+AGG | - | chr4.2:1043697-1043716 | None:intergenic | 25.0% |
| ! | GATGATTAACTTTGATTACA+AGG | + | chr4.2:1041715-1041734 | MS.gene62653:CDS | 25.0% |
| ! | GATTATTATGTTGTCGAATT+TGG | + | chr4.2:1045876-1045895 | MS.gene62653:intron | 25.0% |
| ! | GTATATCTCTTGTATTTCTT+CGG | + | chr4.2:1045287-1045306 | MS.gene62653:intron | 25.0% |
| ! | TAAACATGAAAATCATGTCA+AGG | - | chr4.2:1046233-1046252 | None:intergenic | 25.0% |
| ! | TAAAGCAGTACAATAGTATT+GGG | - | chr4.2:1043805-1043824 | None:intergenic | 25.0% |
| ! | TAACATTAACTTCTCTCTAA+AGG | - | chr4.2:1043008-1043027 | None:intergenic | 25.0% |
| ! | TAATAGTTACAGCTATAGAA+GGG | - | chr4.2:1044143-1044162 | None:intergenic | 25.0% |
| ! | TATATATTACTCCAAAGGTT+TGG | + | chr4.2:1042927-1042946 | MS.gene62653:intron | 25.0% |
| ! | TATATCTCTTGTATTTCTTC+GGG | + | chr4.2:1045288-1045307 | MS.gene62653:intron | 25.0% |
| ! | TATGAAGTCATTAGTAAGTT+TGG | + | chr4.2:1042902-1042921 | MS.gene62653:intron | 25.0% |
| ! | TGAAGTTATGGTGAATAAAA+AGG | - | chr4.2:1041645-1041664 | None:intergenic | 25.0% |
| ! | TGAATAGATAACAACGAAAA+AGG | - | chr4.2:1044518-1044537 | None:intergenic | 25.0% |
| ! | TGGATTATATATTACTCCAA+AGG | + | chr4.2:1042922-1042941 | MS.gene62653:intron | 25.0% |
| ! | TTGAAATGATTACTTATTGC+TGG | + | chr4.2:1041504-1041523 | MS.gene62653:intron | 25.0% |
| !! | ATACTCTAGAAAACACATAA+TGG | + | chr4.2:1045173-1045192 | MS.gene62653:intron | 25.0% |
| !! | CCTAATTTTTCCAATTTCAA+TGG | + | chr4.2:1045557-1045576 | MS.gene62653:intron | 25.0% |
| !! | GATATATTGGTAACTAATCA+AGG | - | chr4.2:1041420-1041439 | None:intergenic | 25.0% |
| !! | TCCAGATTTTCATATAAAAC+AGG | - | chr4.2:1042005-1042024 | None:intergenic | 25.0% |
| !!! | AAATTGTTTTACATCAGTGT+TGG | + | chr4.2:1043243-1043262 | MS.gene62653:intron | 25.0% |
| !!! | AAGGGTTCTTTTTTAGTTAA+AGG | - | chr4.2:1045789-1045808 | None:intergenic | 25.0% |
| !!! | AGGGTTCTTTTTTAGTTAAA+GGG | - | chr4.2:1045788-1045807 | None:intergenic | 25.0% |
| !!! | ATATTGTATTTTTCAGGGAA+AGG | + | chr4.2:1041867-1041886 | MS.gene62653:intron | 25.0% |
| !!! | CGCCATTTTAAAAATACTTA+AGG | + | chr4.2:1042165-1042184 | MS.gene62653:intron | 25.0% |
| !!! | GCAATTTTTTCATGTTATCT+AGG | + | chr4.2:1043368-1043387 | MS.gene62653:intron | 25.0% |
| !!! | TGTGTTTTCTAGAGTATTTT+CGG | - | chr4.2:1045170-1045189 | None:intergenic | 25.0% |
| !!! | TTGTTTTTGTAGTTTCTTAG+TGG | + | chr4.2:1041785-1041804 | MS.gene62653:intron | 25.0% |
| AAAATCCGAAAGAGAAAGTA+AGG | - | chr4.2:1040650-1040669 | None:intergenic | 30.0% | |
| AAAGGATAATTTATCTGCCA+TGG | + | chr4.2:1041531-1041550 | MS.gene62653:intron | 30.0% | |
| AAATACTTAAGGTGAGTGTA+CGG | + | chr4.2:1042176-1042195 | MS.gene62653:intron | 30.0% | |
| AAGCATGAGCACTTATTAAA+TGG | - | chr4.2:1042667-1042686 | None:intergenic | 30.0% | |
| AATAATGCATTCTTTGACCA+AGG | + | chr4.2:1041213-1041232 | MS.gene62653:intron | 30.0% | |
| AATGTTGAAATCAGATAAGG+CGG | - | chr4.2:1045979-1045998 | None:intergenic | 30.0% | |
| AATTTATGGACTTGTCTATG+CGG | + | chr4.2:1043140-1043159 | MS.gene62653:intron | 30.0% | |
| ACAAATCTACAATGTGATGA+TGG | - | chr4.2:1044671-1044690 | None:intergenic | 30.0% | |
| ACCTGAAAAAATTAAGCTGA+TGG | - | chr4.2:1043166-1043185 | None:intergenic | 30.0% | |
| ACTACAAATAACAAAAGGGA+AGG | - | chr4.2:1041609-1041628 | None:intergenic | 30.0% | |
| AGAAATTCTCTCTTAATCAC+AGG | + | chr4.2:1040622-1040641 | MS.gene62653:CDS | 30.0% | |
| ATCATTAATGCTAGCACTAT+TGG | + | chr4.2:1044447-1044466 | MS.gene62653:intron | 30.0% | |
| ATGTTGTCGAATTTGGATTA+GGG | + | chr4.2:1045883-1045902 | MS.gene62653:intron | 30.0% | |
| CACATTGTTCTCATCTTATA+TGG | + | chr4.2:1045015-1045034 | MS.gene62653:intron | 30.0% | |
| CACGGTAAGCAAAATTTAAA+TGG | - | chr4.2:1045923-1045942 | None:intergenic | 30.0% | |
| CAGATAGTAATAAGTATGCA+TGG | - | chr4.2:1043214-1043233 | None:intergenic | 30.0% | |
| CATAACCAATGGTTTACAAT+TGG | - | chr4.2:1043930-1043949 | None:intergenic | 30.0% | |
| CATATAAGATGAGAACAATG+TGG | - | chr4.2:1045017-1045036 | None:intergenic | 30.0% | |
| CTAATAGTTACAGCTATAGA+AGG | - | chr4.2:1044144-1044163 | None:intergenic | 30.0% | |
| CTACAAATAACAAAAGGGAA+GGG | - | chr4.2:1041608-1041627 | None:intergenic | 30.0% | |
| CTTATCCAATTGTAAACCAT+TGG | + | chr4.2:1043922-1043941 | MS.gene62653:intron | 30.0% | |
| GATAGTAATAAGTATGCATG+GGG | - | chr4.2:1043212-1043231 | None:intergenic | 30.0% | |
| GGAAAGACAAAACTTGAAAT+TGG | - | chr4.2:1043832-1043851 | None:intergenic | 30.0% | |
| GTAAAGCAGTACAATAGTAT+TGG | - | chr4.2:1043806-1043825 | None:intergenic | 30.0% | |
| GTGACAAATCATTTATCGTT+GGG | + | chr4.2:1043541-1043560 | MS.gene62653:CDS | 30.0% | |
| TAAATTGAGTGATCATTCCA+TGG | - | chr4.2:1041551-1041570 | None:intergenic | 30.0% | |
| TACAAATAACAAAAGGGAAG+GGG | - | chr4.2:1041607-1041626 | None:intergenic | 30.0% | |
| TACAGAACACAGTTTCAAAT+GGG | + | chr4.2:1041892-1041911 | MS.gene62653:CDS | 30.0% | |
| TATGTTGTCGAATTTGGATT+AGG | + | chr4.2:1045882-1045901 | MS.gene62653:intron | 30.0% | |
| TCATTAATGCTAGCACTATT+GGG | + | chr4.2:1044448-1044467 | MS.gene62653:intron | 30.0% | |
| TCTGATTTCAACATTTGTGT+TGG | + | chr4.2:1045984-1046003 | MS.gene62653:intron | 30.0% | |
| TCTGCAATATCAATTTACAG+CGG | + | chr4.2:1045719-1045738 | MS.gene62653:intron | 30.0% | |
| TGCTCGGAATAAAATATGAA+AGG | - | chr4.2:1045370-1045389 | None:intergenic | 30.0% | |
| TGGAGTTTCATACTCAATTA+GGG | - | chr4.2:1044997-1045016 | None:intergenic | 30.0% | |
| TGTGACAAATCATTTATCGT+TGG | + | chr4.2:1043540-1043559 | MS.gene62653:CDS | 30.0% | |
| TGTGATTAAGAGAGAATTTC+TGG | - | chr4.2:1040623-1040642 | None:intergenic | 30.0% | |
| TTACAGAACACAGTTTCAAA+TGG | + | chr4.2:1041891-1041910 | MS.gene62653:CDS | 30.0% | |
| TTCTTCTATGAATTTAGCCA+CGG | + | chr4.2:1044829-1044848 | MS.gene62653:intron | 30.0% | |
| TTTCAATGGATACACATATC+TGG | + | chr4.2:1045571-1045590 | MS.gene62653:intron | 30.0% | |
| ! | AAAGATGGATATTTCTACTC+AGG | + | chr4.2:1042114-1042133 | MS.gene62653:intron | 30.0% |
| ! | AAGATGGATATTTCTACTCA+GGG | + | chr4.2:1042115-1042134 | MS.gene62653:intron | 30.0% |
| ! | ATAAATGATTTGTCACACTC+TGG | - | chr4.2:1043537-1043556 | None:intergenic | 30.0% |
| ! | ATGGTAGTATTGAAGATCAT+TGG | + | chr4.2:1043293-1043312 | MS.gene62653:intron | 30.0% |
| ! | GAACTTGAATCTTTGTTTGT+AGG | + | chr4.2:1040685-1040704 | MS.gene62653:intron | 30.0% |
| ! | GCCTGTTTTATATGAAAATC+TGG | + | chr4.2:1042001-1042020 | MS.gene62653:intron | 30.0% |
| ! | GTTGCTAATTTTTACTGTAG+AGG | + | chr4.2:1045310-1045329 | MS.gene62653:intron | 30.0% |
| ! | TGTTACAAAAATTTAGGGTG+AGG | - | chr4.2:1043091-1043110 | None:intergenic | 30.0% |
| ! | TTTATTCCGAGCAACATTTT+TGG | + | chr4.2:1045377-1045396 | MS.gene62653:intron | 30.0% |
| ! | TTTCTGATTGAAGGTGTATT+TGG | - | chr4.2:1041046-1041065 | None:intergenic | 30.0% |
| ! | TTTTGTCTTTCCAATATTCC+TGG | + | chr4.2:1043840-1043859 | MS.gene62653:intron | 30.0% |
| !! | AGATACATTCCGTTTGTTAT+GGG | + | chr4.2:1043346-1043365 | MS.gene62653:intron | 30.0% |
| !! | CATGGTTTGGTACAATTTAT+GGG | + | chr4.2:1043466-1043485 | MS.gene62653:intron | 30.0% |
| !! | TAGTTTTACTCCAGGAATAT+TGG | - | chr4.2:1043853-1043872 | None:intergenic | 30.0% |
| !! | TATCTATTTCAGGTCTGTTT+TGG | + | chr4.2:1043432-1043451 | MS.gene62653:intron | 30.0% |
| !! | TTGATAGTGTTATGAGAGTA+TGG | + | chr4.2:1041453-1041472 | MS.gene62653:intron | 30.0% |
| !!! | GAATTTCTGGTTAAGCATTT+TGG | - | chr4.2:1040610-1040629 | None:intergenic | 30.0% |
| ACAAATCATTTATCGTTGGG+TGG | + | chr4.2:1043544-1043563 | MS.gene62653:CDS | 35.0% | |
| ACAGAACACAGTTTCAAATG+GGG | + | chr4.2:1041893-1041912 | MS.gene62653:CDS | 35.0% | |
| AGACAAAACTTGAAATTGGC+TGG | - | chr4.2:1043828-1043847 | None:intergenic | 35.0% | |
| AGACATAATTGAGCCTTGAA+CGG | + | chr4.2:1044896-1044915 | MS.gene62653:intron | 35.0% | |
| AGCAAAATTTAAATGGCCAC+CGG | - | chr4.2:1045916-1045935 | None:intergenic | 35.0% | |
| AGGTACCTTACTTTCTCTTT+CGG | + | chr4.2:1040642-1040661 | MS.gene62653:intron | 35.0% | |
| AGTAATGCTTTGTCTTTCCT+TGG | + | chr4.2:1045633-1045652 | MS.gene62653:intron | 35.0% | |
| AGTAGTTTGGCCAATATTTG+AGG | + | chr4.2:1042820-1042839 | MS.gene62653:intron | 35.0% | |
| AGTGGTTAAAAAACAGGTCT+TGG | + | chr4.2:1042953-1042972 | MS.gene62653:intron | 35.0% | |
| ATATCAACGCTTATGGTTGA+AGG | - | chr4.2:1041176-1041195 | None:intergenic | 35.0% | |
| ATATGCCAACTAGAAGATGA+GGG | - | chr4.2:1041764-1041783 | None:intergenic | 35.0% | |
| ATCTATATTCCCACAATTCG+TGG | - | chr4.2:1044023-1044042 | None:intergenic | 35.0% | |
| ATTGGAAAAATTAGGTGCTC+TGG | - | chr4.2:1045552-1045571 | None:intergenic | 35.0% | |
| CAGTGCTATGCATATGTATA+TGG | + | chr4.2:1042721-1042740 | MS.gene62653:intron | 35.0% | |
| CCAACTGCTAACTATGAATT+CGG | + | chr4.2:1040813-1040832 | MS.gene62653:CDS | 35.0% | |
| CTAATCAAGGAAGTAGAAAC+AGG | - | chr4.2:1041407-1041426 | None:intergenic | 35.0% | |
| CTCTACAATATCAACGCTTA+TGG | - | chr4.2:1041183-1041202 | None:intergenic | 35.0% | |
| GAAGTTGGACACAAAAACTA+GGG | - | chr4.2:1045247-1045266 | None:intergenic | 35.0% | |
| GAATTTCATTCTTTCTGCAG+AGG | + | chr4.2:1046092-1046111 | MS.gene62653:CDS | 35.0% | |
| GCAGCTTTCAAAAAACACTA+TGG | - | chr4.2:1045467-1045486 | None:intergenic | 35.0% | |
| GGCAAGTTATATTCAGGTAA+TGG | + | chr4.2:1041933-1041952 | MS.gene62653:intron | 35.0% | |
| GTATATATACCCGATACTTG+TGG | - | chr4.2:1042627-1042646 | None:intergenic | 35.0% | |
| GTCAATGGAGGAATAGATAA+GGG | - | chr4.2:1044057-1044076 | None:intergenic | 35.0% | |
| GTGGAGTTTCATACTCAATT+AGG | - | chr4.2:1044998-1045017 | None:intergenic | 35.0% | |
| TAAAAAACAGGTCTTGGATC+CGG | + | chr4.2:1042959-1042978 | MS.gene62653:intron | 35.0% | |
| TAAAGTTGTTGTCACGTGAT+AGG | + | chr4.2:1042451-1042470 | MS.gene62653:intron | 35.0% | |
| TATATGCCAACTAGAAGATG+AGG | - | chr4.2:1041765-1041784 | None:intergenic | 35.0% | |
| TATGAGAAAGCCACAAGTAT+CGG | + | chr4.2:1042614-1042633 | MS.gene62653:intron | 35.0% | |
| TATTAAATACCATGCGGGTA+TGG | + | chr4.2:1043889-1043908 | MS.gene62653:intron | 35.0% | |
| TCGCTACAACACTGATAAAA+TGG | + | chr4.2:1043618-1043637 | MS.gene62653:CDS | 35.0% | |
| TGGTCTAGTGGTTAAAAAAC+AGG | + | chr4.2:1042947-1042966 | MS.gene62653:intron | 35.0% | |
| TTATGACTACATTCTCAGAC+AGG | + | chr4.2:1044799-1044818 | MS.gene62653:CDS | 35.0% | |
| TTGATACTCAGTGTTTCGAT+GGG | + | chr4.2:1040747-1040766 | MS.gene62653:intron | 35.0% | |
| TTTGATACTCAGTGTTTCGA+TGG | + | chr4.2:1040746-1040765 | MS.gene62653:intron | 35.0% | |
| ! | AAAAATTTAGGGTGAGGAGA+TGG | - | chr4.2:1043085-1043104 | None:intergenic | 35.0% |
| ! | AACCATTGGTTATGCTACAA+AGG | + | chr4.2:1043936-1043955 | MS.gene62653:intron | 35.0% |
| ! | ACCATTGGTTATGCTACAAA+GGG | + | chr4.2:1043937-1043956 | MS.gene62653:intron | 35.0% |
| ! | ATTTTCGGCATCCAAATCAT+TGG | - | chr4.2:1045155-1045174 | None:intergenic | 35.0% |
| ! | CTCACTTGTTAGCTGTAAAA+AGG | - | chr4.2:1041678-1041697 | None:intergenic | 35.0% |
| ! | GAGATACATTCCGTTTGTTA+TGG | + | chr4.2:1043345-1043364 | MS.gene62653:intron | 35.0% |
| ! | GGCAAGAAAGTATGAAGTTA+TGG | - | chr4.2:1041657-1041676 | None:intergenic | 35.0% |
| ! | TAGGTCATGAGTTCAAGTTA+TGG | + | chr4.2:1042470-1042489 | MS.gene62653:intron | 35.0% |
| ! | TATTTTATAGTGCCGCCTTA+GGG | + | chr4.2:1046008-1046027 | MS.gene62653:intron | 35.0% |
| ! | TGAAAAGGAAGGTATACCTT+AGG | - | chr4.2:1040858-1040877 | None:intergenic | 35.0% |
| ! | TTACTTATTGCTGGCTGAAA+AGG | + | chr4.2:1041513-1041532 | MS.gene62653:intron | 35.0% |
| !! | AAGTATCGGGTATATATACG+TGG | + | chr4.2:1042628-1042647 | MS.gene62653:intron | 35.0% |
| !! | CATAAGCGTTGATATTGTAG+AGG | + | chr4.2:1041181-1041200 | MS.gene62653:intron | 35.0% |
| !! | GCATGGTTTGGTACAATTTA+TGG | + | chr4.2:1043465-1043484 | MS.gene62653:intron | 35.0% |
| !! | GTTTTGGATTTATTGTCGCA+TGG | + | chr4.2:1043448-1043467 | MS.gene62653:intron | 35.0% |
| !! | TTATTTTATAGTGCCGCCTT+AGG | + | chr4.2:1046007-1046026 | MS.gene62653:intron | 35.0% |
| !! | TTTTGGCTGTCTTCTCTATT+TGG | + | chr4.2:1045394-1045413 | MS.gene62653:intron | 35.0% |
| !!! | CCTTTTTAGCTGTCGTTTTA+GGG | + | chr4.2:1044290-1044309 | MS.gene62653:intron | 35.0% |
| !!! | GCCATCAGCTTAATTTTTTC+AGG | + | chr4.2:1043162-1043181 | MS.gene62653:intron | 35.0% |
| !!! | GTTTTGTAGCTGTTGCTTTT+GGG | + | chr4.2:1041240-1041259 | MS.gene62653:intron | 35.0% |
| !!! | TCCTTTTTAGCTGTCGTTTT+AGG | + | chr4.2:1044289-1044308 | MS.gene62653:intron | 35.0% |
| !!! | TGTATGTGTGCTGTTTGTTT+TGG | + | chr4.2:1045118-1045137 | MS.gene62653:intron | 35.0% |
| !!! | TGTTTTGTAGCTGTTGCTTT+TGG | + | chr4.2:1041239-1041258 | MS.gene62653:intron | 35.0% |
| !!! | TTTTGTAGCTGTTGCTTTTG+GGG | + | chr4.2:1041241-1041260 | MS.gene62653:intron | 35.0% |
| AAAAGCAGCACAAACACCAT+TGG | - | chr4.2:1046046-1046065 | None:intergenic | 40.0% | |
| AATGCTTTGTCTTTCCTTGG+CGG | + | chr4.2:1045636-1045655 | MS.gene62653:intron | 40.0% | |
| ACACAGTTTCAAATGGGGAA+TGG | + | chr4.2:1041898-1041917 | MS.gene62653:CDS | 40.0% | |
| ACAGCTACAAAACATCACCT+TGG | - | chr4.2:1041233-1041252 | None:intergenic | 40.0% | |
| ACATTCGTAGGGTCTGATAA+GGG | - | chr4.2:1042554-1042573 | None:intergenic | 40.0% | |
| ACCCTTTGTAGCATAACCAA+TGG | - | chr4.2:1043941-1043960 | None:intergenic | 40.0% | |
| ACGACATGAATGTGAATGTG+TGG | + | chr4.2:1044860-1044879 | MS.gene62653:intron | 40.0% | |
| ACTAAAACTCCCACATTCGT+AGG | - | chr4.2:1042566-1042585 | None:intergenic | 40.0% | |
| AGACAGCCAAAAATGTTGCT+CGG | - | chr4.2:1045386-1045405 | None:intergenic | 40.0% | |
| ATATATAAGCAGAGGGAAGC+AGG | - | chr4.2:1043689-1043708 | None:intergenic | 40.0% | |
| ATGAAGTTCTTCGAAGGGAA+TGG | - | chr4.2:1040428-1040447 | None:intergenic | 40.0% | |
| ATGAGAAAGCCACAAGTATC+GGG | + | chr4.2:1042615-1042634 | MS.gene62653:intron | 40.0% | |
| ATTATATCAAGGGGGAACCT+TGG | + | chr4.2:1042420-1042439 | MS.gene62653:intron | 40.0% | |
| ATTTCTACTCAGGGATGGTA+AGG | + | chr4.2:1042124-1042143 | MS.gene62653:intron | 40.0% | |
| CAAATTGATCATCTGCATCC+AGG | + | chr4.2:1044571-1044590 | MS.gene62653:intron | 40.0% | |
| CATCACCTGACCTCAAATAT+TGG | - | chr4.2:1042833-1042852 | None:intergenic | 40.0% | |
| CATGAAAATCATGTCAAGGC+AGG | - | chr4.2:1046229-1046248 | None:intergenic | 40.0% | |
| CCCTAAAACGACAGCTAAAA+AGG | - | chr4.2:1044293-1044312 | None:intergenic | 40.0% | |
| CCGAATTCATAGTTAGCAGT+TGG | - | chr4.2:1040816-1040835 | None:intergenic | 40.0% | |
| CGAAGTTGGACACAAAAACT+AGG | - | chr4.2:1045248-1045267 | None:intergenic | 40.0% | |
| CTAAAACTCCCACATTCGTA+GGG | - | chr4.2:1042565-1042584 | None:intergenic | 40.0% | |
| CTCATCTTATATGGGTGCAT+CGG | + | chr4.2:1045024-1045043 | MS.gene62653:intron | 40.0% | |
| CTGCTGACATTTCTGATTGA+AGG | - | chr4.2:1041055-1041074 | None:intergenic | 40.0% | |
| CTTGTGTAAAAAACAGGGTG+AGG | + | chr4.2:1042499-1042518 | MS.gene62653:intron | 40.0% | |
| GAACTTCATCGATCATCCTA+AGG | + | chr4.2:1040839-1040858 | MS.gene62653:CDS | 40.0% | |
| GACAGCTAAAAAGGAACAGA+GGG | - | chr4.2:1044284-1044303 | None:intergenic | 40.0% | |
| GACATAATTGAGCCTTGAAC+GGG | + | chr4.2:1044897-1044916 | MS.gene62653:intron | 40.0% | |
| GAGGATTCTGACATGTATAC+TGG | + | chr4.2:1041079-1041098 | MS.gene62653:intron | 40.0% | |
| GGATTTATTGTCGCATGGTT+TGG | + | chr4.2:1043453-1043472 | MS.gene62653:intron | 40.0% | |
| GGTCAATGGAGGAATAGATA+AGG | - | chr4.2:1044058-1044077 | None:intergenic | 40.0% | |
| TAACCACTAGACCAAACCTT+TGG | - | chr4.2:1042941-1042960 | None:intergenic | 40.0% | |
| TGAAGTTCTTCGAAGGGAAT+GGG | - | chr4.2:1040427-1040446 | None:intergenic | 40.0% | |
| TGTTTCCTCTACTAGAACCA+GGG | + | chr4.2:1045610-1045629 | MS.gene62653:intron | 40.0% | |
| TTATCAGACCCTACGAATGT+GGG | + | chr4.2:1042554-1042573 | MS.gene62653:intron | 40.0% | |
| TTGGAGGAGAGGTTAAACAT+GGG | + | chr4.2:1046066-1046085 | MS.gene62653:CDS | 40.0% | |
| TTGTTTCCTCTACTAGAACC+AGG | + | chr4.2:1045609-1045628 | MS.gene62653:intron | 40.0% | |
| TTTGGAGGAGAGGTTAAACA+TGG | + | chr4.2:1046065-1046084 | MS.gene62653:CDS | 40.0% | |
| ! | AAAGACAAAGCATTACTCCC+TGG | - | chr4.2:1045630-1045649 | None:intergenic | 40.0% |
| ! | AATATAACTTGCCCCTAGCA+AGG | - | chr4.2:1041926-1041945 | None:intergenic | 40.0% |
| ! | ACTTGCTGCAATTGAAAGTG+TGG | + | chr4.2:1045053-1045072 | MS.gene62653:intron | 40.0% |
| ! | AGGACTTAGAGCACTTACAA+AGG | - | chr4.2:1043034-1043053 | None:intergenic | 40.0% |
| ! | ATGCTAAAAAGGTGCGAAGT+TGG | - | chr4.2:1045262-1045281 | None:intergenic | 40.0% |
| ! | ATTTTATAGTGCCGCCTTAG+GGG | + | chr4.2:1046009-1046028 | MS.gene62653:intron | 40.0% |
| ! | CAATATTTGAGGTCAGGTGA+TGG | + | chr4.2:1042831-1042850 | MS.gene62653:intron | 40.0% |
| ! | CACTTTGAAAGCAAATGCTC+AGG | + | chr4.2:1041323-1041342 | MS.gene62653:CDS | 40.0% |
| ! | CAGTTAGAGTTGCTTTCATG+TGG | + | chr4.2:1044933-1044952 | MS.gene62653:intron | 40.0% |
| ! | GGACTTAGAGCACTTACAAA+GGG | - | chr4.2:1043033-1043052 | None:intergenic | 40.0% |
| ! | TAACTTCTCTCTAAAGGCAC+TGG | - | chr4.2:1043002-1043021 | None:intergenic | 40.0% |
| ! | TCATGTCGTACTATTTTCCG+TGG | - | chr4.2:1044849-1044868 | None:intergenic | 40.0% |
| ! | TGGATATTTCTACTCAGGGA+TGG | + | chr4.2:1042119-1042138 | MS.gene62653:intron | 40.0% |
| ! | TGTAAGTGCTCTAAGTCCTA+AGG | + | chr4.2:1043035-1043054 | MS.gene62653:intron | 40.0% |
| ! | TTGAAGCCGGAACTTTTTGA+AGG | + | chr4.2:1040567-1040586 | MS.gene62653:CDS | 40.0% |
| ! | TTGTCGAATTTGGATTAGGG+AGG | + | chr4.2:1045886-1045905 | MS.gene62653:intron | 40.0% |
| ! | TTTGGCCAATATTTGAGGTC+AGG | + | chr4.2:1042825-1042844 | MS.gene62653:intron | 40.0% |
| !! | GTACATCGTAGTTTTACTCC+AGG | - | chr4.2:1043861-1043880 | None:intergenic | 40.0% |
| !! | TTTGGATTTGGTTTGACCGT+TGG | + | chr4.2:1046290-1046309 | MS.gene62653:CDS | 40.0% |
| !!! | GTTTTCAGTGTCTTTGAAGC+CGG | + | chr4.2:1040554-1040573 | MS.gene62653:intron | 40.0% |
| !!! | TGGTGTTTGTGCTGCTTTTT+TGG | + | chr4.2:1046047-1046066 | MS.gene62653:CDS | 40.0% |
| !!! | TGTTTGTGCTGCTTTTTTGG+AGG | + | chr4.2:1046050-1046069 | MS.gene62653:CDS | 40.0% |
| AATCAACCTTTCCCCTAAGG+CGG | - | chr4.2:1046023-1046042 | None:intergenic | 45.0% | |
| ACCTCTCATGTCAGTAACAC+AGG | - | chr4.2:1045850-1045869 | None:intergenic | 45.0% | |
| AGTGACTGACGTCAATGTCA+AGG | - | chr4.2:1040998-1041017 | None:intergenic | 45.0% | |
| ATAACCTCAGCAGACTGAGA+AGG | - | chr4.2:1040786-1040805 | None:intergenic | 45.0% | |
| ATCATCCCTTGCGACATATG+TGG | - | chr4.2:1041701-1041720 | None:intergenic | 45.0% | |
| ATCTTATATGGGTGCATCGG+AGG | + | chr4.2:1045027-1045046 | MS.gene62653:intron | 45.0% | |
| CAAAAGAACCATTCCAGTGC+TGG | - | chr4.2:1044615-1044634 | None:intergenic | 45.0% | |
| CACATTCGTAGGGTCTGATA+AGG | - | chr4.2:1042555-1042574 | None:intergenic | 45.0% | |
| CACTGCATCCTCCAATGATT+TGG | + | chr4.2:1045141-1045160 | MS.gene62653:intron | 45.0% | |
| CAGAAATGTCAGCAGTACAG+AGG | + | chr4.2:1041060-1041079 | MS.gene62653:intron | 45.0% | |
| CATTCGTAGGGTCTGATAAG+GGG | - | chr4.2:1042553-1042572 | None:intergenic | 45.0% | |
| CGACAGCTAAAAAGGAACAG+AGG | - | chr4.2:1044285-1044304 | None:intergenic | 45.0% | |
| CGCATGCCTTCAAAAAGTTC+CGG | - | chr4.2:1040576-1040595 | None:intergenic | 45.0% | |
| CTTATCAGACCCTACGAATG+TGG | + | chr4.2:1042553-1042572 | MS.gene62653:intron | 45.0% | |
| CTTATGGTTGAAGGCTTGTG+TGG | - | chr4.2:1041167-1041186 | None:intergenic | 45.0% | |
| GACTGAGAAGGAATCTCAGT+AGG | - | chr4.2:1040774-1040793 | None:intergenic | 45.0% | |
| GAGAGCTATGACTGATGGAA+GGG | + | chr4.2:1041263-1041282 | MS.gene62653:CDS | 45.0% | |
| GATCCTAGTCAGCTTTCGAA+GGG | - | chr4.2:1045807-1045826 | None:intergenic | 45.0% | |
| GCTAGGGGCAAGTTATATTC+AGG | + | chr4.2:1041927-1041946 | MS.gene62653:CDS | 45.0% | |
| GTACAACACACCGAAATGGT+GGG | + | chr4.2:1042526-1042545 | MS.gene62653:intron | 45.0% | |
| GTTGTTAGGGTGTGTGTGTT+TGG | + | chr4.2:1046144-1046163 | MS.gene62653:intron | 45.0% | |
| TCACATGAAATGTTCCTCGC+AGG | + | chr4.2:1044715-1044734 | MS.gene62653:intron | 45.0% | |
| TCATTTATCGTTGGGTGGAG+AGG | + | chr4.2:1043549-1043568 | MS.gene62653:CDS | 45.0% | |
| TCGCGATGAAGTTCTTCGAA+GGG | - | chr4.2:1040433-1040452 | None:intergenic | 45.0% | |
| TCTTATATGGGTGCATCGGA+GGG | + | chr4.2:1045028-1045047 | MS.gene62653:intron | 45.0% | |
| TGAGCCAATAATCCCGTTCA+AGG | - | chr4.2:1044912-1044931 | None:intergenic | 45.0% | |
| TGAGCCTTGAACGGGATTAT+TGG | + | chr4.2:1044905-1044924 | MS.gene62653:intron | 45.0% | |
| TGATCCTAGTCAGCTTTCGA+AGG | - | chr4.2:1045808-1045827 | None:intergenic | 45.0% | |
| TGGAATCAACCTTTCCCCTA+AGG | - | chr4.2:1046026-1046045 | None:intergenic | 45.0% | |
| TGTTGCCCTCATCTTCTAGT+TGG | + | chr4.2:1041756-1041775 | MS.gene62653:intron | 45.0% | |
| TTCGCGATGAAGTTCTTCGA+AGG | - | chr4.2:1040434-1040453 | None:intergenic | 45.0% | |
| TTCGGCATCCAAATCATTGG+AGG | - | chr4.2:1045152-1045171 | None:intergenic | 45.0% | |
| ! | AAAAGCATACCATACCCGCA+TGG | - | chr4.2:1043901-1043920 | None:intergenic | 45.0% |
| ! | AAGCTGCTGATTGTGCATGT+AGG | - | chr4.2:1043665-1043684 | None:intergenic | 45.0% |
| ! | ACTCCAAAGGTTTGGTCTAG+TGG | + | chr4.2:1042935-1042954 | MS.gene62653:intron | 45.0% |
| ! | AGGGGAAAGGTTGATTCCAA+TGG | + | chr4.2:1046027-1046046 | MS.gene62653:CDS | 45.0% |
| ! | TCCTGTGTTACTGACATGAG+AGG | + | chr4.2:1045846-1045865 | MS.gene62653:intron | 45.0% |
| ! | TTTGGATTAGGGAGGTCATC+CGG | + | chr4.2:1045894-1045913 | MS.gene62653:intron | 45.0% |
| !! | ATGTGGGAGTTTTAGTGCAC+TGG | + | chr4.2:1042570-1042589 | MS.gene62653:intron | 45.0% |
| !! | TGTGGGAGTTTTAGTGCACT+GGG | + | chr4.2:1042571-1042590 | MS.gene62653:intron | 45.0% |
| !! | TTACTCCCTGGTTCTAGTAG+AGG | - | chr4.2:1045618-1045637 | None:intergenic | 45.0% |
| !! | TTCTCTCTAAAGGCACTGGT+GGG | - | chr4.2:1042998-1043017 | None:intergenic | 45.0% |
| !!! | GTTGGGTGGAGAGGTATTTT+GGG | + | chr4.2:1043558-1043577 | MS.gene62653:CDS | 45.0% |
| !! | TATATGTAAATATAAATTTA+TGG | + | chr4.2:1043126-1043145 | MS.gene62653:intron | 5.0% |
| !!! | CTATTTTAAAATTTTTAATT+GGG | + | chr4.2:1045687-1045706 | MS.gene62653:intron | 5.0% |
| ACAACTTTACCGTTGCGCCA+AGG | - | chr4.2:1042440-1042459 | None:intergenic | 50.0% | |
| ACTCAGGGATGGTAAGGTAC+AGG | + | chr4.2:1042130-1042149 | MS.gene62653:intron | 50.0% | |
| AGTGAGCCACATATGTCGCA+AGG | + | chr4.2:1041692-1041711 | MS.gene62653:CDS | 50.0% | |
| ATCAGTGTCAGTGCTGTGCT+TGG | - | chr4.2:1040925-1040944 | None:intergenic | 50.0% | |
| CCTATAGCACTGTCACGTTG+CGG | + | chr4.2:1043963-1043982 | MS.gene62653:intron | 50.0% | |
| CGTACAACACACCGAAATGG+TGG | + | chr4.2:1042525-1042544 | MS.gene62653:intron | 50.0% | |
| CTCCATGTTCTACCCAGCAA+GGG | + | chr4.2:1044082-1044101 | MS.gene62653:intron | 50.0% | |
| CTGATCGACCTTCTTGTCGT+CGG | - | chr4.2:1040377-1040396 | None:intergenic | 50.0% | |
| CTGCGTACAACACACCGAAA+TGG | + | chr4.2:1042522-1042541 | MS.gene62653:intron | 50.0% | |
| CTGGGTAGAACATGGAGGTT+GGG | - | chr4.2:1044079-1044098 | None:intergenic | 50.0% | |
| GAACATGGAGGTTGGGTCAA+TGG | - | chr4.2:1044072-1044091 | None:intergenic | 50.0% | |
| GAACCCTTCGAAAGCTGACT+AGG | + | chr4.2:1045801-1045820 | MS.gene62653:intron | 50.0% | |
| GATAAGGGGTCCCACCATTT+CGG | - | chr4.2:1042539-1042558 | None:intergenic | 50.0% | |
| GATTCCTTCTCAGTCTGCTG+AGG | + | chr4.2:1040779-1040798 | MS.gene62653:CDS | 50.0% | |
| GGAGAGCTATGACTGATGGA+AGG | + | chr4.2:1041262-1041281 | MS.gene62653:CDS | 50.0% | |
| GGATGGTAAGGTACAGGTAC+GGG | + | chr4.2:1042136-1042155 | MS.gene62653:intron | 50.0% | |
| GGGATGGTAAGGTACAGGTA+CGG | + | chr4.2:1042135-1042154 | MS.gene62653:intron | 50.0% | |
| GTCTTGGATCCGGAAGTTCT+GGG | + | chr4.2:1042969-1042988 | MS.gene62653:intron | 50.0% | |
| GTGAGCCACATATGTCGCAA+GGG | + | chr4.2:1041693-1041712 | MS.gene62653:CDS | 50.0% | |
| TCCAAGGCAGGTAAGACCTT+AGG | - | chr4.2:1043054-1043073 | None:intergenic | 50.0% | |
| TCCATGTTCTACCCAGCAAG+GGG | + | chr4.2:1044083-1044102 | MS.gene62653:intron | 50.0% | |
| TCCTAAGGTCTTACCTGCCT+TGG | + | chr4.2:1043050-1043069 | MS.gene62653:intron | 50.0% | |
| TCTTCGAAGGGAATGGGACA+AGG | - | chr4.2:1040421-1040440 | None:intergenic | 50.0% | |
| TTGGGGAGAGCTATGACTGA+TGG | + | chr4.2:1041258-1041277 | MS.gene62653:CDS | 50.0% | |
| ! | ACAAGTTGCCAGCACTGGAA+TGG | + | chr4.2:1044604-1044623 | MS.gene62653:CDS | 50.0% |
| ! | AGAGACGTCACTGCTAGCTT+TGG | + | chr4.2:1044776-1044795 | MS.gene62653:CDS | 50.0% |
| !! | CTTCTCTCTAAAGGCACTGG+TGG | - | chr4.2:1042999-1043018 | None:intergenic | 50.0% |
| !! | TCTCTCTAAAGGCACTGGTG+GGG | - | chr4.2:1042997-1043016 | None:intergenic | 50.0% |
| !!! | CGTTGGGTGGAGAGGTATTT+TGG | + | chr4.2:1043557-1043576 | MS.gene62653:CDS | 50.0% |
| !!! | GTGCTGCTTTTTTGGAGGAG+AGG | + | chr4.2:1046055-1046074 | MS.gene62653:CDS | 50.0% |
| ACAGGACAAGTTGCCAGCAC+TGG | + | chr4.2:1044599-1044618 | MS.gene62653:CDS | 55.0% | |
| AGCACTGTCACGTTGCGGAA+GGG | + | chr4.2:1043968-1043987 | MS.gene62653:intron | 55.0% | |
| AGCAGCTAGAGAAACCTGCG+AGG | - | chr4.2:1044732-1044751 | None:intergenic | 55.0% | |
| AGGTCTTACCTGCCTTGGAC+TGG | + | chr4.2:1043055-1043074 | MS.gene62653:intron | 55.0% | |
| ATAGTGCCGCCTTAGGGGAA+AGG | + | chr4.2:1046014-1046033 | MS.gene62653:intron | 55.0% | |
| ATCGACCTTCTTGTCGTCGG+CGG | - | chr4.2:1040374-1040393 | None:intergenic | 55.0% | |
| ATCTGCATCCAGGTTGCCAC+AGG | + | chr4.2:1044581-1044600 | MS.gene62653:intron | 55.0% | |
| ATGGGGAATGGAGCCTTGCT+AGG | + | chr4.2:1041910-1041929 | MS.gene62653:CDS | 55.0% | |
| CAACTTGTCCTGTGGCAACC+TGG | - | chr4.2:1044592-1044611 | None:intergenic | 55.0% | |
| CATGGAGGTTGGGTCAATGG+AGG | - | chr4.2:1044069-1044088 | None:intergenic | 55.0% | |
| CCATGTTCTACCCAGCAAGG+GGG | + | chr4.2:1044084-1044103 | MS.gene62653:intron | 55.0% | |
| CCGCAACGTGACAGTGCTAT+AGG | - | chr4.2:1043966-1043985 | None:intergenic | 55.0% | |
| CCTCCATGTTCTACCCAGCA+AGG | + | chr4.2:1044081-1044100 | MS.gene62653:intron | 55.0% | |
| CCTTGCTGGGTAGAACATGG+AGG | - | chr4.2:1044084-1044103 | None:intergenic | 55.0% | |
| CGAAGGGAATGGGACAAGGA+AGG | - | chr4.2:1040417-1040436 | None:intergenic | 55.0% | |
| GCGAGCAGCATAACCTACAC+CGG | - | chr4.2:1043602-1043621 | None:intergenic | 55.0% | |
| GCTGGGTAGAACATGGAGGT+TGG | - | chr4.2:1044080-1044099 | None:intergenic | 55.0% | |
| GGGAATGGGACAAGGAAGGT+TGG | - | chr4.2:1040413-1040432 | None:intergenic | 55.0% | |
| GGTCTTACCTGCCTTGGACT+GGG | + | chr4.2:1043056-1043075 | MS.gene62653:intron | 55.0% | |
| GGTCTTGGATCCGGAAGTTC+TGG | + | chr4.2:1042968-1042987 | MS.gene62653:intron | 55.0% | |
| GTCTTACCTGCCTTGGACTG+GGG | + | chr4.2:1043057-1043076 | MS.gene62653:intron | 55.0% | |
| TAGCACTGTCACGTTGCGGA+AGG | + | chr4.2:1043967-1043986 | MS.gene62653:intron | 55.0% | |
| TGGGGAATGGAGCCTTGCTA+GGG | + | chr4.2:1041911-1041930 | MS.gene62653:CDS | 55.0% | |
| TTCACCATCTCCCCCTTGCT+GGG | - | chr4.2:1044097-1044116 | None:intergenic | 55.0% | |
| ! | CAGCATCGAAAGTCCGGTGT+AGG | + | chr4.2:1043586-1043605 | MS.gene62653:CDS | 55.0% |
| ! | GCTGGTCAGCATCGAAAGTC+CGG | + | chr4.2:1043580-1043599 | MS.gene62653:CDS | 55.0% |
| !! | AGTGCTGGCAACTTGTCCTG+TGG | - | chr4.2:1044600-1044619 | None:intergenic | 55.0% |
| !!! | GGTGGAGAGGTATTTTGGGC+TGG | + | chr4.2:1043562-1043581 | MS.gene62653:CDS | 55.0% |
| AAGGGGGAACCTTGGCGCAA+CGG | + | chr4.2:1042428-1042447 | MS.gene62653:intron | 60.0% | |
| ACCTTCTTGTCGTCGGCGGT+GGG | - | chr4.2:1040370-1040389 | None:intergenic | 60.0% | |
| ACTGCTGCCGTACTTGCCTG+GGG | + | chr4.2:1043997-1044016 | MS.gene62653:intron | 60.0% | |
| CCCCCTTGCTGGGTAGAACA+TGG | - | chr4.2:1044087-1044106 | None:intergenic | 60.0% | |
| CTTCACCATCTCCCCCTTGC+TGG | - | chr4.2:1044098-1044117 | None:intergenic | 60.0% | |
| GACTGCTGCCGTACTTGCCT+GGG | + | chr4.2:1043996-1044015 | MS.gene62653:intron | 60.0% | |
| GGATTAGGGAGGTCATCCGG+TGG | + | chr4.2:1045897-1045916 | MS.gene62653:intron | 60.0% | |
| GGCGTCACTGAAATCCGCCA+AGG | - | chr4.2:1045653-1045672 | None:intergenic | 60.0% | |
| GGGGAATGGAGCCTTGCTAG+GGG | + | chr4.2:1041912-1041931 | MS.gene62653:CDS | 60.0% | |
| GGTGGGGAACCCAGAACTTC+CGG | - | chr4.2:1042981-1043000 | None:intergenic | 60.0% | |
| TCTACCCAGCAAGGGGGAGA+TGG | + | chr4.2:1044090-1044109 | MS.gene62653:intron | 60.0% | |
| TGACTGCTGCCGTACTTGCC+TGG | + | chr4.2:1043995-1044014 | MS.gene62653:intron | 60.0% | |
| TGCCTGGGGCCACGAATTGT+GGG | + | chr4.2:1044011-1044030 | MS.gene62653:intron | 60.0% | |
| TTCCCACAATTCGTGGCCCC+AGG | - | chr4.2:1044016-1044035 | None:intergenic | 60.0% | |
| TTCGTGGCCCCAGGCAAGTA+CGG | - | chr4.2:1044007-1044026 | None:intergenic | 60.0% | |
| TTGCCTGGGGCCACGAATTG+TGG | + | chr4.2:1044010-1044029 | MS.gene62653:intron | 60.0% | |
| TTGTCGTCGGCGGTGGGAAT+CGG | - | chr4.2:1040364-1040383 | None:intergenic | 60.0% | |
| ! | CTTCGGCGTCGAAGACGTGT+CGG | + | chr4.2:1041138-1041157 | MS.gene62653:intron | 60.0% |
| ATGGCACCCCAGTCCAAGGC+AGG | - | chr4.2:1043066-1043085 | None:intergenic | 65.0% | |
| GACCTTCTTGTCGTCGGCGG+TGG | - | chr4.2:1040371-1040390 | None:intergenic | 65.0% | |
| GGAGATGGCACCCCAGTCCA+AGG | - | chr4.2:1043070-1043089 | None:intergenic | 65.0% | |
| TCCCACCGCCGACGACAAGA+AGG | + | chr4.2:1040366-1040385 | MS.gene62653:CDS | 65.0% | |
| TCGTCGGCGGTGGGAATCGG+TGG | - | chr4.2:1040361-1040380 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 1040343 | 1046319 | 1040343 | ID=MS.gene62653 |
| chr4.2 | mRNA | 1040343 | 1046319 | 1040343 | ID=MS.gene62653.t1;Parent=MS.gene62653 |
| chr4.2 | exon | 1040343 | 1040460 | 1040343 | ID=MS.gene62653.t1.exon1;Parent=MS.gene62653.t1 |
| chr4.2 | CDS | 1040343 | 1040460 | 1040343 | ID=cds.MS.gene62653.t1;Parent=MS.gene62653.t1 |
| chr4.2 | exon | 1040562 | 1040643 | 1040562 | ID=MS.gene62653.t1.exon2;Parent=MS.gene62653.t1 |
| chr4.2 | CDS | 1040562 | 1040643 | 1040562 | ID=cds.MS.gene62653.t1;Parent=MS.gene62653.t1 |
| chr4.2 | exon | 1040758 | 1040860 | 1040758 | ID=MS.gene62653.t1.exon3;Parent=MS.gene62653.t1 |
| chr4.2 | CDS | 1040758 | 1040860 | 1040758 | ID=cds.MS.gene62653.t1;Parent=MS.gene62653.t1 |
| chr4.2 | exon | 1041249 | 1041344 | 1041249 | ID=MS.gene62653.t1.exon4;Parent=MS.gene62653.t1 |
| chr4.2 | CDS | 1041249 | 1041344 | 1041249 | ID=cds.MS.gene62653.t1;Parent=MS.gene62653.t1 |
| chr4.2 | exon | 1041686 | 1041736 | 1041686 | ID=MS.gene62653.t1.exon5;Parent=MS.gene62653.t1 |
| chr4.2 | CDS | 1041686 | 1041736 | 1041686 | ID=cds.MS.gene62653.t1;Parent=MS.gene62653.t1 |
| chr4.2 | exon | 1041883 | 1041948 | 1041883 | ID=MS.gene62653.t1.exon6;Parent=MS.gene62653.t1 |
| chr4.2 | CDS | 1041883 | 1041948 | 1041883 | ID=cds.MS.gene62653.t1;Parent=MS.gene62653.t1 |
| chr4.2 | exon | 1043538 | 1043639 | 1043538 | ID=MS.gene62653.t1.exon7;Parent=MS.gene62653.t1 |
| chr4.2 | CDS | 1043538 | 1043639 | 1043538 | ID=cds.MS.gene62653.t1;Parent=MS.gene62653.t1 |
| chr4.2 | exon | 1044593 | 1044661 | 1044593 | ID=MS.gene62653.t1.exon8;Parent=MS.gene62653.t1 |
| chr4.2 | CDS | 1044593 | 1044661 | 1044593 | ID=cds.MS.gene62653.t1;Parent=MS.gene62653.t1 |
| chr4.2 | exon | 1044737 | 1044820 | 1044737 | ID=MS.gene62653.t1.exon9;Parent=MS.gene62653.t1 |
| chr4.2 | CDS | 1044737 | 1044820 | 1044737 | ID=cds.MS.gene62653.t1;Parent=MS.gene62653.t1 |
| chr4.2 | exon | 1046018 | 1046113 | 1046018 | ID=MS.gene62653.t1.exon10;Parent=MS.gene62653.t1 |
| chr4.2 | CDS | 1046018 | 1046113 | 1046018 | ID=cds.MS.gene62653.t1;Parent=MS.gene62653.t1 |
| chr4.2 | exon | 1046263 | 1046319 | 1046263 | ID=MS.gene62653.t1.exon11;Parent=MS.gene62653.t1 |
| chr4.2 | CDS | 1046263 | 1046319 | 1046263 | ID=cds.MS.gene62653.t1;Parent=MS.gene62653.t1 |
| Gene Sequence |
| Protein sequence |
