Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62778.t1 | XP_003626693.1 | 85 | 333 | 43 | 3 | 1 | 333 | 1 | 326 | 1.10E-132 | 483 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62778.t1 | Q8GXL3 | 64.9 | 188 | 50 | 5 | 136 | 317 | 134 | 311 | 3.2e-56 | 220.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62778.t1 | G7LBJ7 | 85.0 | 333 | 43 | 3 | 1 | 333 | 1 | 326 | 7.9e-133 | 483.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene62778.t1 | TF | SBP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049260 | MS.gene62778 | 0.800956 | 1.13E-48 | -1.69E-46 |
MS.gene051789 | MS.gene62778 | 0.802675 | 5.01E-49 | -1.69E-46 |
MS.gene053074 | MS.gene62778 | 0.821444 | 4.02E-53 | -1.69E-46 |
MS.gene054713 | MS.gene62778 | 0.851779 | 7.10E-61 | -1.69E-46 |
MS.gene058042 | MS.gene62778 | 0.823105 | 1.66E-53 | -1.69E-46 |
MS.gene058168 | MS.gene62778 | 0.809912 | 1.50E-50 | -1.69E-46 |
MS.gene059006 | MS.gene62778 | 0.816358 | 5.76E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62778.t1 | MTR_8g005960 | 93.433 | 335 | 11 | 5 | 1 | 333 | 1 | 326 | 0.0 | 625 |
MS.gene62778.t1 | MTR_2g078770 | 67.045 | 88 | 29 | 0 | 181 | 268 | 45 | 132 | 5.49e-36 | 128 |
MS.gene62778.t1 | MTR_8g463140 | 70.000 | 90 | 26 | 1 | 192 | 281 | 63 | 151 | 1.66e-35 | 127 |
MS.gene62778.t1 | MTR_4g088555 | 72.619 | 84 | 22 | 1 | 186 | 268 | 54 | 137 | 3.51e-35 | 125 |
MS.gene62778.t1 | MTR_1g086250 | 48.649 | 148 | 63 | 3 | 121 | 268 | 87 | 221 | 4.49e-35 | 135 |
MS.gene62778.t1 | MTR_2g046550 | 52.419 | 124 | 53 | 2 | 154 | 277 | 104 | 221 | 1.02e-34 | 134 |
MS.gene62778.t1 | MTR_7g444860 | 67.857 | 84 | 27 | 0 | 187 | 270 | 142 | 225 | 1.70e-34 | 128 |
MS.gene62778.t1 | MTR_1g053715 | 50.781 | 128 | 50 | 1 | 155 | 269 | 22 | 149 | 4.10e-34 | 128 |
MS.gene62778.t1 | MTR_3g085180 | 54.472 | 123 | 49 | 2 | 154 | 269 | 118 | 240 | 9.66e-34 | 129 |
MS.gene62778.t1 | MTR_7g092930 | 67.857 | 84 | 27 | 0 | 184 | 267 | 58 | 141 | 1.67e-33 | 126 |
MS.gene62778.t1 | MTR_7g110320 | 49.624 | 133 | 59 | 2 | 136 | 268 | 95 | 219 | 2.68e-33 | 130 |
MS.gene62778.t1 | MTR_2g014200 | 67.470 | 83 | 27 | 0 | 186 | 268 | 56 | 138 | 3.12e-33 | 120 |
MS.gene62778.t1 | MTR_4g109770 | 70.370 | 81 | 24 | 0 | 189 | 269 | 118 | 198 | 3.36e-33 | 128 |
MS.gene62778.t1 | MTR_7g110320 | 49.624 | 133 | 59 | 2 | 136 | 268 | 95 | 219 | 3.65e-33 | 130 |
MS.gene62778.t1 | MTR_2g461920 | 72.368 | 76 | 21 | 0 | 194 | 269 | 171 | 246 | 4.30e-33 | 128 |
MS.gene62778.t1 | MTR_5g046670 | 61.458 | 96 | 33 | 1 | 174 | 269 | 228 | 319 | 6.58e-33 | 127 |
MS.gene62778.t1 | MTR_1g035010 | 55.000 | 120 | 43 | 1 | 150 | 269 | 71 | 179 | 9.70e-33 | 129 |
MS.gene62778.t1 | MTR_8g096780 | 55.752 | 113 | 46 | 1 | 157 | 269 | 66 | 174 | 1.10e-31 | 122 |
MS.gene62778.t1 | MTR_3g099080 | 68.421 | 76 | 24 | 0 | 194 | 269 | 98 | 173 | 3.83e-30 | 118 |
MS.gene62778.t1 | MTR_7g028740 | 62.651 | 83 | 31 | 0 | 189 | 271 | 72 | 154 | 1.14e-29 | 117 |
MS.gene62778.t1 | MTR_8g080690 | 64.103 | 78 | 28 | 0 | 192 | 269 | 149 | 226 | 2.41e-28 | 113 |
MS.gene62778.t1 | MTR_8g080670 | 50.442 | 113 | 51 | 2 | 154 | 266 | 127 | 234 | 1.47e-27 | 111 |
MS.gene62778.t1 | MTR_8g080680 | 36.150 | 213 | 104 | 6 | 76 | 267 | 4 | 205 | 1.82e-25 | 105 |
MS.gene62778.t1 | MTR_2g020620 | 59.375 | 64 | 26 | 0 | 204 | 267 | 100 | 163 | 4.82e-19 | 88.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62778.t1 | AT1G02065 | 45.075 | 335 | 144 | 9 | 1 | 318 | 1 | 312 | 1.14e-80 | 249 |
MS.gene62778.t1 | AT1G02065 | 44.000 | 250 | 116 | 5 | 1 | 241 | 1 | 235 | 2.79e-59 | 191 |
MS.gene62778.t1 | AT1G69170 | 53.543 | 127 | 52 | 3 | 141 | 267 | 78 | 197 | 1.73e-34 | 130 |
MS.gene62778.t1 | AT1G20980 | 57.627 | 118 | 49 | 1 | 154 | 271 | 81 | 197 | 3.76e-34 | 133 |
MS.gene62778.t1 | AT1G27370 | 47.368 | 152 | 59 | 3 | 134 | 269 | 105 | 251 | 4.23e-34 | 128 |
MS.gene62778.t1 | AT1G27370 | 47.368 | 152 | 59 | 3 | 134 | 269 | 105 | 251 | 7.79e-34 | 128 |
MS.gene62778.t1 | AT1G27370 | 47.368 | 152 | 59 | 3 | 134 | 269 | 105 | 251 | 7.79e-34 | 128 |
MS.gene62778.t1 | AT1G27370 | 47.368 | 152 | 59 | 3 | 134 | 269 | 105 | 251 | 7.79e-34 | 128 |
MS.gene62778.t1 | AT1G27370 | 47.368 | 152 | 59 | 3 | 134 | 269 | 105 | 251 | 7.79e-34 | 128 |
MS.gene62778.t1 | AT1G27370 | 47.368 | 152 | 59 | 3 | 134 | 269 | 105 | 251 | 7.79e-34 | 128 |
MS.gene62778.t1 | AT1G27370 | 47.368 | 152 | 59 | 3 | 134 | 269 | 105 | 251 | 7.79e-34 | 128 |
MS.gene62778.t1 | AT2G47070 | 73.333 | 75 | 20 | 0 | 194 | 268 | 106 | 180 | 2.82e-33 | 130 |
MS.gene62778.t1 | AT3G60030 | 54.545 | 121 | 44 | 3 | 153 | 273 | 96 | 205 | 2.91e-33 | 130 |
MS.gene62778.t1 | AT1G76580 | 71.250 | 80 | 23 | 0 | 190 | 269 | 110 | 189 | 3.25e-33 | 130 |
MS.gene62778.t1 | AT1G76580 | 71.250 | 80 | 23 | 0 | 190 | 269 | 110 | 189 | 3.73e-33 | 130 |
MS.gene62778.t1 | AT1G76580 | 71.250 | 80 | 23 | 0 | 190 | 269 | 110 | 189 | 4.93e-33 | 130 |
MS.gene62778.t1 | AT2G33810 | 67.073 | 82 | 27 | 0 | 187 | 268 | 47 | 128 | 5.73e-33 | 119 |
MS.gene62778.t1 | AT5G43270 | 51.471 | 136 | 49 | 3 | 154 | 275 | 118 | 250 | 1.29e-32 | 125 |
MS.gene62778.t1 | AT5G43270 | 51.471 | 136 | 49 | 3 | 154 | 275 | 118 | 250 | 1.29e-32 | 125 |
MS.gene62778.t1 | AT5G43270 | 51.471 | 136 | 49 | 3 | 154 | 275 | 118 | 250 | 1.29e-32 | 125 |
MS.gene62778.t1 | AT1G53160 | 60.606 | 99 | 35 | 2 | 179 | 273 | 35 | 133 | 2.28e-32 | 119 |
MS.gene62778.t1 | AT1G53160 | 62.766 | 94 | 31 | 2 | 184 | 273 | 40 | 133 | 4.52e-32 | 118 |
MS.gene62778.t1 | AT1G53160 | 62.766 | 94 | 31 | 2 | 184 | 273 | 40 | 133 | 4.52e-32 | 118 |
MS.gene62778.t1 | AT3G57920 | 56.140 | 114 | 44 | 2 | 156 | 269 | 27 | 134 | 6.90e-32 | 122 |
MS.gene62778.t1 | AT1G27360 | 50.781 | 128 | 53 | 2 | 152 | 269 | 123 | 250 | 3.74e-31 | 121 |
MS.gene62778.t1 | AT1G27360 | 50.781 | 128 | 53 | 2 | 152 | 269 | 123 | 250 | 3.74e-31 | 121 |
MS.gene62778.t1 | AT1G27360 | 50.781 | 128 | 53 | 2 | 152 | 269 | 123 | 250 | 3.74e-31 | 121 |
MS.gene62778.t1 | AT1G27360 | 50.781 | 128 | 53 | 2 | 152 | 269 | 123 | 250 | 3.74e-31 | 121 |
MS.gene62778.t1 | AT5G50670 | 60.714 | 84 | 33 | 0 | 186 | 269 | 93 | 176 | 5.20e-30 | 117 |
MS.gene62778.t1 | AT5G50670 | 60.714 | 84 | 33 | 0 | 186 | 269 | 93 | 176 | 5.20e-30 | 117 |
MS.gene62778.t1 | AT5G50570 | 60.714 | 84 | 33 | 0 | 186 | 269 | 93 | 176 | 5.20e-30 | 117 |
MS.gene62778.t1 | AT5G50570 | 60.714 | 84 | 33 | 0 | 186 | 269 | 93 | 176 | 5.20e-30 | 117 |
MS.gene62778.t1 | AT2G42200 | 66.667 | 78 | 26 | 0 | 192 | 269 | 72 | 149 | 1.08e-29 | 117 |
MS.gene62778.t1 | AT3G15270 | 62.667 | 75 | 28 | 0 | 194 | 268 | 63 | 137 | 6.37e-29 | 110 |
MS.gene62778.t1 | AT5G18830 | 46.316 | 95 | 51 | 0 | 173 | 267 | 117 | 211 | 2.36e-22 | 98.6 |
MS.gene62778.t1 | AT5G18830 | 46.316 | 95 | 51 | 0 | 173 | 267 | 117 | 211 | 2.60e-22 | 98.2 |
MS.gene62778.t1 | AT5G18830 | 46.316 | 95 | 51 | 0 | 173 | 267 | 117 | 211 | 2.94e-22 | 98.2 |
MS.gene62778.t1 | AT2G47070 | 72.549 | 51 | 14 | 0 | 218 | 268 | 1 | 51 | 8.59e-19 | 87.8 |
Find 133 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGTTAACATCCTCGGATTT+TGG | 0.206559 | 8.4:-80871571 | None:intergenic |
TTGTGAATATCTTGAGTATT+TGG | 0.246735 | 8.4:-80872657 | None:intergenic |
CTTGAAGTTGTTGAAGGGCT+TGG | 0.266098 | 8.4:-80872962 | None:intergenic |
GGAGTTGTTGTCTTCATTTC+CGG | 0.269715 | 8.4:-80871203 | None:intergenic |
CTCTCCCTTGACCCTCTTCC+TGG | 0.270502 | 8.4:+80871511 | MS.gene62778:CDS |
CTTCTATCTGAGTTTGATAA+TGG | 0.278524 | 8.4:+80872573 | MS.gene62778:CDS |
GCTGGGCCTGTGGGCTAAAC+TGG | 0.287964 | 8.4:-80871387 | None:intergenic |
ATCACAACCTGCTGCATTGC+TGG | 0.295297 | 8.4:-80871864 | None:intergenic |
TCTAGAGCCCACGAAGTCTA+TGG | 0.307240 | 8.4:-80871596 | None:intergenic |
GCAGCCACCGTCGTTGCAGC+TGG | 0.327647 | 8.4:+80871823 | MS.gene62778:CDS |
TTGAAGTTGTTGAAGGGCTT+GGG | 0.330690 | 8.4:-80872961 | None:intergenic |
TTCAAACTCGCCTCGGTGTC+AGG | 0.349519 | 8.4:+80871723 | MS.gene62778:CDS |
GGCTAAACTGGTTGTGGTGG+TGG | 0.358538 | 8.4:-80871375 | None:intergenic |
CCGGTAAGCATGATGTTTGA+TGG | 0.359920 | 8.4:-80871184 | None:intergenic |
TGTGAATATCTTGAGTATTT+GGG | 0.361532 | 8.4:-80872656 | None:intergenic |
CCATCAAACATCATGCTTAC+CGG | 0.366132 | 8.4:+80871184 | MS.gene62778:CDS |
TTGTTGAAGGGCTTGGGCTT+TGG | 0.370317 | 8.4:-80872955 | None:intergenic |
GAAGGATCCCCGCCAGAGTC+TGG | 0.374246 | 8.4:+80872866 | MS.gene62778:intron |
TCGGTCTAGACCACCTGAAC+CGG | 0.380874 | 8.4:+80871687 | MS.gene62778:CDS |
GGAGGTTGTGGTTGAGGTGG+AGG | 0.381025 | 8.4:-80871481 | None:intergenic |
GAACCTGTCGAACCCGGTTC+AGG | 0.386586 | 8.4:-80871700 | None:intergenic |
ATGGAAGGAGGTTGTGGTTG+AGG | 0.388721 | 8.4:-80871487 | None:intergenic |
TTATCCGACAACTACCTTAA+CGG | 0.399307 | 8.4:+80871292 | MS.gene62778:CDS |
AATTTGACGGTGGGCTTGAT+CGG | 0.400326 | 8.4:-80871242 | None:intergenic |
TACCTTAACGGACCTGGTGC+TGG | 0.415148 | 8.4:+80871304 | MS.gene62778:CDS |
TAAACTGGTTGTGGTGGTGG+TGG | 0.418275 | 8.4:-80871372 | None:intergenic |
TGCAACGACGGTGGCTGCCT+TGG | 0.421484 | 8.4:-80871818 | None:intergenic |
CGAAGAAGGACTGATGGATA+TGG | 0.430604 | 8.4:-80871414 | None:intergenic |
GAGAGCATGGAAGGAGGTTG+TGG | 0.432257 | 8.4:-80871493 | None:intergenic |
TCACAAATCTCACAATACTT+TGG | 0.434049 | 8.4:+80872674 | MS.gene62778:CDS |
ACTGGTTGTGGTGGTGGTGG+TGG | 0.436776 | 8.4:-80871369 | None:intergenic |
TTCGACCCACGGGCTTTCCA+TGG | 0.438059 | 8.4:+80871433 | MS.gene62778:CDS |
ACTGATGGATATGGTGCTGC+TGG | 0.447816 | 8.4:-80871405 | None:intergenic |
ATTGAGCTTGAAGTTGTTGA+AGG | 0.454327 | 8.4:-80872968 | None:intergenic |
GACAGTGGCGGTTTCTCCAC+CGG | 0.454790 | 8.4:+80872910 | MS.gene62778:CDS |
TATGGTGCTGCTGGGCCTGT+GGG | 0.461581 | 8.4:-80871396 | None:intergenic |
GTCCAGCACCAGGTCCGTTA+AGG | 0.461905 | 8.4:-80871306 | None:intergenic |
CTTGACCCTCTTCCTGGTCA+TGG | 0.462725 | 8.4:+80871517 | MS.gene62778:CDS |
GAGACATGTTGGACTATGAA+TGG | 0.466941 | 8.4:+80871155 | None:intergenic |
ATATGGTGCTGCTGGGCCTG+TGG | 0.478517 | 8.4:-80871397 | None:intergenic |
TTTGGTACAAGGAGGAATCC+AGG | 0.480794 | 8.4:-80871553 | None:intergenic |
CATGGACATGGACATGGCCC+TGG | 0.481738 | 8.4:+80871535 | MS.gene62778:CDS |
GACTTCGTGGGCTCTAGACT+TGG | 0.484947 | 8.4:+80871601 | MS.gene62778:CDS |
CCACCTGAACCGGGTTCGAC+AGG | 0.485330 | 8.4:+80871697 | MS.gene62778:CDS |
ATCGGAGGCTGCTGCTGCGG+CGG | 0.485623 | 8.4:-80871224 | None:intergenic |
TTGCAATGCTGATCTATCTC+AGG | 0.487614 | 8.4:+80871753 | MS.gene62778:CDS |
AGACATGTTGGACTATGAAT+GGG | 0.488109 | 8.4:+80871156 | None:intergenic |
TATCAAACTCAGATAGAAGA+TGG | 0.491198 | 8.4:-80872569 | None:intergenic |
GGTTCTGCCAGCAATGCAGC+AGG | 0.491828 | 8.4:+80871857 | MS.gene62778:CDS |
GGGTCAAGGGAGAGCATGGA+AGG | 0.493307 | 8.4:-80871502 | None:intergenic |
ATTGAGTTCCAGACTCTGGC+GGG | 0.495092 | 8.4:-80872874 | None:intergenic |
TAGATCAGCATTGCAACCTT+CGG | 0.495851 | 8.4:-80871746 | None:intergenic |
CCTCTTCCTGGTCATGGACA+TGG | 0.496987 | 8.4:+80871523 | MS.gene62778:CDS |
CGGTAAGCATGATGTTTGAT+GGG | 0.498241 | 8.4:-80871183 | None:intergenic |
GCGGCTCACGAAGTCGTCTT+CGG | 0.499397 | 8.4:-80871656 | None:intergenic |
ATCAGTCCTTCTTCGACCCA+CGG | 0.500041 | 8.4:+80871422 | MS.gene62778:CDS |
CCTGGTCATGGACATGGACA+TGG | 0.500096 | 8.4:+80871529 | MS.gene62778:CDS |
CACAAACTTTGTGGCGGCGG+TGG | 0.502474 | 8.4:-80871786 | None:intergenic |
AAGAGGGTCAAGGGAGAGCA+TGG | 0.508675 | 8.4:-80871506 | None:intergenic |
GAAAGCCCGTGGGTCGAAGA+AGG | 0.515436 | 8.4:-80871428 | None:intergenic |
ACCCACGGGCTTTCCATGGA+GGG | 0.516573 | 8.4:+80871437 | MS.gene62778:CDS |
GAAGGAGGTTGTGGTTGAGG+TGG | 0.517345 | 8.4:-80871484 | None:intergenic |
TCAGTCCTTCTTCGACCCAC+GGG | 0.517839 | 8.4:+80871423 | MS.gene62778:CDS |
GTGGTCTAGACCGACGGTAA+AGG | 0.522892 | 8.4:-80871678 | None:intergenic |
CCTGTGGGCTAAACTGGTTG+TGG | 0.528281 | 8.4:-80871381 | None:intergenic |
AGTGAAACTCACAAACTTTG+TGG | 0.531020 | 8.4:-80871795 | None:intergenic |
TTTGAAGAACCTGTCGAACC+CGG | 0.531837 | 8.4:-80871706 | None:intergenic |
TCTAGACTTGGACTCAACCT+TGG | 0.532282 | 8.4:+80871613 | MS.gene62778:CDS |
ACGTAGCTGCAGGAAGAGAT+TGG | 0.533276 | 8.4:+80872599 | MS.gene62778:CDS |
TCGATGGTGGGTCCAGCACC+AGG | 0.535316 | 8.4:-80871316 | None:intergenic |
AAGCAGTTGATGACCCTCCA+TGG | 0.538221 | 8.4:-80871450 | None:intergenic |
AGGTCCGTTAAGGTAGTTGT+CGG | 0.538800 | 8.4:-80871296 | None:intergenic |
ATCACCACTGTTTATGTCGA+TGG | 0.538976 | 8.4:-80871332 | None:intergenic |
ATCTACATCGTCGGTGACAG+TGG | 0.539420 | 8.4:+80872895 | MS.gene62778:CDS |
GACCTTTGTCGAAAATAATC+CGG | 0.539450 | 8.4:-80872929 | None:intergenic |
TTGATCGGAGGCTGCTGCTG+CGG | 0.542405 | 8.4:-80871227 | None:intergenic |
CTAGAGCCCACGAAGTCTAT+GGG | 0.543180 | 8.4:-80871595 | None:intergenic |
GTGGGCTAAACTGGTTGTGG+TGG | 0.546991 | 8.4:-80871378 | None:intergenic |
TATGGGTCTGTTAACATCCT+CGG | 0.547316 | 8.4:-80871578 | None:intergenic |
CCATGTCCATGTCCATGACC+AGG | 0.547483 | 8.4:-80871529 | None:intergenic |
AGTCAACCCAGCTGCAACGA+CGG | 0.547853 | 8.4:-80871830 | None:intergenic |
CAGCCACCGTCGTTGCAGCT+GGG | 0.549496 | 8.4:+80871824 | MS.gene62778:CDS |
CCATGTCCATGACCAGGAAG+AGG | 0.550701 | 8.4:-80871523 | None:intergenic |
ATAATGGAAAACGTAGCTGC+AGG | 0.553645 | 8.4:+80872589 | MS.gene62778:CDS |
CTGATGGATATGGTGCTGCT+GGG | 0.553703 | 8.4:-80871404 | None:intergenic |
CAGGTTCTTCAAACTCGCCT+CGG | 0.554504 | 8.4:+80871716 | MS.gene62778:CDS |
TTGAGCTTGAAGTTGTTGAA+GGG | 0.561199 | 8.4:-80872967 | None:intergenic |
GACCCACGGGCTTTCCATGG+AGG | 0.561666 | 8.4:+80871436 | MS.gene62778:CDS |
TAACAGACCCATAGACTTCG+TGG | 0.562712 | 8.4:+80871588 | MS.gene62778:CDS |
ACTCACAAACTTTGTGGCGG+CGG | 0.568304 | 8.4:-80871789 | None:intergenic |
GTGGTCGAAAATTTGACGGT+GGG | 0.570524 | 8.4:-80871251 | None:intergenic |
CGTAGTGGTCGAAAATTTGA+CGG | 0.570580 | 8.4:-80871255 | None:intergenic |
CATGACCAGGAAGAGGGTCA+AGG | 0.572330 | 8.4:-80871516 | None:intergenic |
GACAACTACCTTAACGGACC+TGG | 0.572506 | 8.4:+80871298 | MS.gene62778:CDS |
TCGTGAGCCGCCTTTACCGT+CGG | 0.573246 | 8.4:+80871668 | MS.gene62778:CDS |
GACCCTCCATGGAAAGCCCG+TGG | 0.579305 | 8.4:-80871439 | None:intergenic |
GTAGATTGAGTTCCAGACTC+TGG | 0.579544 | 8.4:-80872878 | None:intergenic |
GAGGTTGTGGTTGAGGTGGA+GGG | 0.580574 | 8.4:-80871480 | None:intergenic |
ATGACCAGGAAGAGGGTCAA+GGG | 0.581128 | 8.4:-80871515 | None:intergenic |
CCACAACCAGTTTAGCCCAC+AGG | 0.583382 | 8.4:+80871381 | MS.gene62778:CDS |
ACCACTGTTTATGTCGATGG+TGG | 0.584036 | 8.4:-80871329 | None:intergenic |
GTGGGTCGAAGAAGGACTGA+TGG | 0.584810 | 8.4:-80871420 | None:intergenic |
CCTGTCGAACCCGGTTCAGG+TGG | 0.588152 | 8.4:-80871697 | None:intergenic |
TGGCTGATCATAATCGTCGC+AGG | 0.588393 | 8.4:+80872619 | MS.gene62778:CDS |
CGGTCTAGACCACCTGAACC+GGG | 0.589283 | 8.4:+80871688 | MS.gene62778:CDS |
TCGCCTCGGTGTCAGGCCGA+AGG | 0.589450 | 8.4:+80871730 | MS.gene62778:CDS |
AGAAGTATGTGCGGCCACCA+AGG | 0.589908 | 8.4:-80871630 | None:intergenic |
CCACTGTTTATGTCGATGGT+GGG | 0.597970 | 8.4:-80871328 | None:intergenic |
TTGGTACAAGGAGGAATCCA+GGG | 0.599525 | 8.4:-80871552 | None:intergenic |
AGACTTGGACTCAACCTTGG+TGG | 0.599617 | 8.4:+80871616 | MS.gene62778:CDS |
TTGACGGTGGGCTTGATCGG+AGG | 0.603910 | 8.4:-80871239 | None:intergenic |
TTGCAGCTGGGTTGACTCAG+CGG | 0.610713 | 8.4:+80871836 | MS.gene62778:CDS |
TCAAGGGAGAGCATGGAAGG+AGG | 0.612363 | 8.4:-80871499 | None:intergenic |
GTCTAGACCGACGGTAAAGG+CGG | 0.615862 | 8.4:-80871675 | None:intergenic |
AGTTTGTGAGTTTCACTCCA+AGG | 0.619014 | 8.4:+80871801 | MS.gene62778:CDS |
TACATCGTCGGTGACAGTGG+CGG | 0.620396 | 8.4:+80872898 | MS.gene62778:CDS |
CATGTCCATGACCAGGAAGA+GGG | 0.620462 | 8.4:-80871522 | None:intergenic |
GATTGAGTTCCAGACTCTGG+CGG | 0.626944 | 8.4:-80872875 | None:intergenic |
TGGAACTCAATCTACATCGT+CGG | 0.632089 | 8.4:+80872886 | MS.gene62778:CDS |
ACCCTCCATGGAAAGCCCGT+GGG | 0.633313 | 8.4:-80871438 | None:intergenic |
AACAGACCCATAGACTTCGT+GGG | 0.640045 | 8.4:+80871589 | MS.gene62778:CDS |
CAACCCAGCTGCAACGACGG+TGG | 0.640932 | 8.4:-80871827 | None:intergenic |
GTTCAGGTGGTCTAGACCGA+CGG | 0.647783 | 8.4:-80871684 | None:intergenic |
CCTCCTTGTACCAAAATCCG+AGG | 0.665794 | 8.4:+80871561 | MS.gene62778:CDS |
AGTGGTCGAAAATTTGACGG+TGG | 0.671593 | 8.4:-80871252 | None:intergenic |
ACATAGCTTGAGAAGCGTAG+TGG | 0.674169 | 8.4:-80871270 | None:intergenic |
GACATGTTGGACTATGAATG+GGG | 0.677368 | 8.4:+80871157 | None:intergenic |
GAAACTCACAAACTTTGTGG+CGG | 0.681714 | 8.4:-80871792 | None:intergenic |
CTTTGTCGAAAATAATCCGG+TGG | 0.682961 | 8.4:-80872926 | None:intergenic |
CAACCTTCGGCCTGACACCG+AGG | 0.715496 | 8.4:-80871733 | None:intergenic |
TTGAGTTCCAGACTCTGGCG+GGG | 0.723001 | 8.4:-80872873 | None:intergenic |
CTTCGGAAGAGAAGTATGTG+CGG | 0.729099 | 8.4:-80871639 | None:intergenic |
CCCACCATCGACATAAACAG+TGG | 0.734841 | 8.4:+80871328 | MS.gene62778:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAAATAAATATATATGC+AGG | + | chr8.4:80872544-80872563 | MS.gene62778:intron | 10.0% |
!! | ATTCTATTTAACCAAAAATA+AGG | + | chr8.4:80872790-80872809 | MS.gene62778:intron | 15.0% |
!! | TTCTATTTAACCAAAAATAA+GGG | + | chr8.4:80872791-80872810 | MS.gene62778:intron | 15.0% |
!!! | TGATTTGTTTTTTATTTTGA+AGG | + | chr8.4:80872848-80872867 | MS.gene62778:intron | 15.0% |
!! | AATACTAACATCTTAATCAA+AGG | - | chr8.4:80872103-80872122 | None:intergenic | 20.0% |
!! | TTGATTAAGAAAATTACTTG+TGG | - | chr8.4:80872709-80872728 | None:intergenic | 20.0% |
!!! | AGTAGTAGTATATGTTTTAA+GGG | - | chr8.4:80872311-80872330 | None:intergenic | 20.0% |
!!! | GATTAAGATGTTAGTATTTT+GGG | + | chr8.4:80872105-80872124 | MS.gene62778:intron | 20.0% |
!!! | TAAACGGTTTTTTATCAAAA+AGG | + | chr8.4:80872076-80872095 | MS.gene62778:intron | 20.0% |
!!! | TGAGTTAGGTTTTAATTAAA+CGG | + | chr8.4:80872060-80872079 | MS.gene62778:intron | 20.0% |
!!! | TGATTAAGATGTTAGTATTT+TGG | + | chr8.4:80872104-80872123 | MS.gene62778:intron | 20.0% |
! | ACTTATCATAAGCATGATTA+TGG | + | chr8.4:80872818-80872837 | MS.gene62778:intron | 25.0% |
! | CAAATTAACACAAGTTTAGT+AGG | - | chr8.4:80872042-80872061 | None:intergenic | 25.0% |
! | TGTGAATATCTTGAGTATTT+GGG | - | chr8.4:80872659-80872678 | None:intergenic | 25.0% |
! | TTGTGAATATCTTGAGTATT+TGG | - | chr8.4:80872660-80872679 | None:intergenic | 25.0% |
!! | AACTTGTGTTAATTTGAGTT+AGG | + | chr8.4:80872046-80872065 | MS.gene62778:intron | 25.0% |
!! | GAGTAGTAGTATATGTTTTA+AGG | - | chr8.4:80872312-80872331 | None:intergenic | 25.0% |
!! | TCAATGATTGAGTTGTTAAA+GGG | - | chr8.4:80871909-80871928 | None:intergenic | 25.0% |
!!! | ATAAGTAACTCCCTTATTTT+TGG | - | chr8.4:80872804-80872823 | None:intergenic | 25.0% |
!!! | TGTTGTTTAATTTGCACTTA+TGG | - | chr8.4:80872012-80872031 | None:intergenic | 25.0% |
!!! | TTTAATTTGCACTTATGGTA+TGG | - | chr8.4:80872007-80872026 | None:intergenic | 25.0% |
AAGGTTGGATTCAAAAAAGA+CGG | + | chr8.4:80872208-80872227 | MS.gene62778:intron | 30.0% | |
CTTCTATCTGAGTTTGATAA+TGG | + | chr8.4:80872573-80872592 | MS.gene62778:CDS | 30.0% | |
TATCAAACTCAGATAGAAGA+TGG | - | chr8.4:80872572-80872591 | None:intergenic | 30.0% | |
TCACAAATCTCACAATACTT+TGG | + | chr8.4:80872674-80872693 | MS.gene62778:CDS | 30.0% | |
! | CAATGATTGAGTTGTTAAAG+GGG | - | chr8.4:80871908-80871927 | None:intergenic | 30.0% |
! | CTCAATGATTGAGTTGTTAA+AGG | - | chr8.4:80871910-80871929 | None:intergenic | 30.0% |
!! | TACTACTCACTTAGTTTGTT+TGG | + | chr8.4:80872324-80872343 | MS.gene62778:intron | 30.0% |
!!! | GGTTTTAAAAACGTGTATGA+GGG | + | chr8.4:80872126-80872145 | MS.gene62778:intron | 30.0% |
AGTGAAACTCACAAACTTTG+TGG | - | chr8.4:80871798-80871817 | None:intergenic | 35.0% | |
ATTGAGCTTGAAGTTGTTGA+AGG | - | chr8.4:80872971-80872990 | None:intergenic | 35.0% | |
GACCTTTGTCGAAAATAATC+CGG | - | chr8.4:80872932-80872951 | None:intergenic | 35.0% | |
TTATCCGACAACTACCTTAA+CGG | + | chr8.4:80871292-80871311 | MS.gene62778:CDS | 35.0% | |
TTGAGCTTGAAGTTGTTGAA+GGG | - | chr8.4:80872970-80872989 | None:intergenic | 35.0% | |
! | ATTTTTGTGCCTCACTTCAA+GGG | + | chr8.4:80871942-80871961 | MS.gene62778:intron | 35.0% |
!! | TATTTTTGTGCCTCACTTCA+AGG | + | chr8.4:80871941-80871960 | MS.gene62778:intron | 35.0% |
!!! | GCTGTGTTGTTTTGTTTGAA+TGG | - | chr8.4:80872409-80872428 | None:intergenic | 35.0% |
!!! | GGGTTTTAAAAACGTGTATG+AGG | + | chr8.4:80872125-80872144 | MS.gene62778:intron | 35.0% |
AAAAGACGGAAATACCCTTG+AGG | + | chr8.4:80872222-80872241 | MS.gene62778:intron | 40.0% | |
AAAGACGGAAATACCCTTGA+GGG | + | chr8.4:80872223-80872242 | MS.gene62778:intron | 40.0% | |
AGTAAGCAAGCACAAAACAG+CGG | + | chr8.4:80872167-80872186 | MS.gene62778:intron | 40.0% | |
AGTTGACCGTACATTACATG+GGG | + | chr8.4:80872264-80872283 | MS.gene62778:intron | 40.0% | |
AGTTTGTGAGTTTCACTCCA+AGG | + | chr8.4:80871801-80871820 | MS.gene62778:CDS | 40.0% | |
ATCACCACTGTTTATGTCGA+TGG | - | chr8.4:80871335-80871354 | None:intergenic | 40.0% | |
CCATCAAACATCATGCTTAC+CGG | + | chr8.4:80871184-80871203 | MS.gene62778:CDS | 40.0% | |
CGGTAAGCATGATGTTTGAT+GGG | - | chr8.4:80871186-80871205 | None:intergenic | 40.0% | |
CGTAGTGGTCGAAAATTTGA+CGG | - | chr8.4:80871258-80871277 | None:intergenic | 40.0% | |
CTTTGTCGAAAATAATCCGG+TGG | - | chr8.4:80872929-80872948 | None:intergenic | 40.0% | |
GAAACTCACAAACTTTGTGG+CGG | - | chr8.4:80871795-80871814 | None:intergenic | 40.0% | |
GAGTTGACCGTACATTACAT+GGG | + | chr8.4:80872263-80872282 | MS.gene62778:intron | 40.0% | |
GGAGTTGTTGTCTTCATTTC+CGG | - | chr8.4:80871206-80871225 | None:intergenic | 40.0% | |
GGATTTCCCCATGTAATGTA+CGG | - | chr8.4:80872273-80872292 | None:intergenic | 40.0% | |
TAGATCAGCATTGCAACCTT+CGG | - | chr8.4:80871749-80871768 | None:intergenic | 40.0% | |
TATGGGTCTGTTAACATCCT+CGG | - | chr8.4:80871581-80871600 | None:intergenic | 40.0% | |
TGGAACTCAATCTACATCGT+CGG | + | chr8.4:80872886-80872905 | MS.gene62778:CDS | 40.0% | |
TTGAAGTTGTTGAAGGGCTT+GGG | - | chr8.4:80872964-80872983 | None:intergenic | 40.0% | |
TTGCAATGCTGATCTATCTC+AGG | + | chr8.4:80871753-80871772 | MS.gene62778:CDS | 40.0% | |
! | AGCTCAATGTTTTTCTCCAC+CGG | + | chr8.4:80872983-80873002 | MS.gene62778:CDS | 40.0% |
! | ATAATGGAAAACGTAGCTGC+AGG | + | chr8.4:80872589-80872608 | MS.gene62778:CDS | 40.0% |
! | CACCGGATTATTTTCGACAA+AGG | + | chr8.4:80872927-80872946 | MS.gene62778:CDS | 40.0% |
! | CTGTTAACATCCTCGGATTT+TGG | - | chr8.4:80871574-80871593 | None:intergenic | 40.0% |
! | TGAGTTGACCGTACATTACA+TGG | + | chr8.4:80872262-80872281 | MS.gene62778:intron | 40.0% |
AACAGACCCATAGACTTCGT+GGG | + | chr8.4:80871589-80871608 | MS.gene62778:CDS | 45.0% | |
AAGACGGAAATACCCTTGAG+GGG | + | chr8.4:80872224-80872243 | MS.gene62778:intron | 45.0% | |
AAGCACAAAACAGCGGTGTT+GGG | + | chr8.4:80872174-80872193 | MS.gene62778:intron | 45.0% | |
ACCACTGTTTATGTCGATGG+TGG | - | chr8.4:80871332-80871351 | None:intergenic | 45.0% | |
ACGAAAATGCCCTTGAAGTG+AGG | - | chr8.4:80871954-80871973 | None:intergenic | 45.0% | |
AGGTCCGTTAAGGTAGTTGT+CGG | - | chr8.4:80871299-80871318 | None:intergenic | 45.0% | |
AGTGGTCGAAAATTTGACGG+TGG | - | chr8.4:80871255-80871274 | None:intergenic | 45.0% | |
ATTACATGGGGAAATCCCGA+GGG | + | chr8.4:80872276-80872295 | MS.gene62778:intron | 45.0% | |
ATTGTCAACTCTCCCCTCAA+GGG | - | chr8.4:80872239-80872258 | None:intergenic | 45.0% | |
CCACTGTTTATGTCGATGGT+GGG | - | chr8.4:80871331-80871350 | None:intergenic | 45.0% | |
CCGGTAAGCATGATGTTTGA+TGG | - | chr8.4:80871187-80871206 | None:intergenic | 45.0% | |
CTTGAAGTTGTTGAAGGGCT+TGG | - | chr8.4:80872965-80872984 | None:intergenic | 45.0% | |
GTAGATTGAGTTCCAGACTC+TGG | - | chr8.4:80872881-80872900 | None:intergenic | 45.0% | |
GTGGTCGAAAATTTGACGGT+GGG | - | chr8.4:80871254-80871273 | None:intergenic | 45.0% | |
TAACAGACCCATAGACTTCG+TGG | + | chr8.4:80871588-80871607 | MS.gene62778:CDS | 45.0% | |
TCTAGACTTGGACTCAACCT+TGG | + | chr8.4:80871613-80871632 | MS.gene62778:CDS | 45.0% | |
TTAAGGGACACAAATGCCCT+CGG | - | chr8.4:80872295-80872314 | None:intergenic | 45.0% | |
TTGGTACAAGGAGGAATCCA+GGG | - | chr8.4:80871555-80871574 | None:intergenic | 45.0% | |
TTTGAAGAACCTGTCGAACC+CGG | - | chr8.4:80871709-80871728 | None:intergenic | 45.0% | |
TTTGGTACAAGGAGGAATCC+AGG | - | chr8.4:80871556-80871575 | None:intergenic | 45.0% | |
! | AATTTGACGGTGGGCTTGAT+CGG | - | chr8.4:80871245-80871264 | None:intergenic | 45.0% |
! | ACATAGCTTGAGAAGCGTAG+TGG | - | chr8.4:80871273-80871292 | None:intergenic | 45.0% |
! | CGAAGAAGGACTGATGGATA+TGG | - | chr8.4:80871417-80871436 | None:intergenic | 45.0% |
! | CTTCGGAAGAGAAGTATGTG+CGG | - | chr8.4:80871642-80871661 | None:intergenic | 45.0% |
!! | CATCCTCGGATTTTGGTACA+AGG | - | chr8.4:80871567-80871586 | None:intergenic | 45.0% |
!! | AAATAATAATAATAATATAG+TGG | - | chr8.4:80872473-80872492 | None:intergenic | 5.0% |
ACGTAGCTGCAGGAAGAGAT+TGG | + | chr8.4:80872599-80872618 | MS.gene62778:CDS | 50.0% | |
ACTCACAAACTTTGTGGCGG+CGG | - | chr8.4:80871792-80871811 | None:intergenic | 50.0% | |
AGACTTGGACTCAACCTTGG+TGG | + | chr8.4:80871616-80871635 | MS.gene62778:CDS | 50.0% | |
ATCACAACCTGCTGCATTGC+TGG | - | chr8.4:80871867-80871886 | None:intergenic | 50.0% | |
ATCAGTCCTTCTTCGACCCA+CGG | + | chr8.4:80871422-80871441 | MS.gene62778:CDS | 50.0% | |
ATCTACATCGTCGGTGACAG+TGG | + | chr8.4:80872895-80872914 | MS.gene62778:CDS | 50.0% | |
ATGACCAGGAAGAGGGTCAA+GGG | - | chr8.4:80871518-80871537 | None:intergenic | 50.0% | |
ATGGAAGGAGGTTGTGGTTG+AGG | - | chr8.4:80871490-80871509 | None:intergenic | 50.0% | |
ATTGAGTTCCAGACTCTGGC+GGG | - | chr8.4:80872877-80872896 | None:intergenic | 50.0% | |
CAAGCACAAAACAGCGGTGT+TGG | + | chr8.4:80872173-80872192 | MS.gene62778:intron | 50.0% | |
CAGGTTCTTCAAACTCGCCT+CGG | + | chr8.4:80871716-80871735 | MS.gene62778:CDS | 50.0% | |
CATGTCCATGACCAGGAAGA+GGG | - | chr8.4:80871525-80871544 | None:intergenic | 50.0% | |
CATTACATGGGGAAATCCCG+AGG | + | chr8.4:80872275-80872294 | MS.gene62778:intron | 50.0% | |
CATTGTCAACTCTCCCCTCA+AGG | - | chr8.4:80872240-80872259 | None:intergenic | 50.0% | |
CCCACCATCGACATAAACAG+TGG | + | chr8.4:80871328-80871347 | MS.gene62778:CDS | 50.0% | |
CCTCCTTGTACCAAAATCCG+AGG | + | chr8.4:80871561-80871580 | MS.gene62778:CDS | 50.0% | |
CTAGAGCCCACGAAGTCTAT+GGG | - | chr8.4:80871598-80871617 | None:intergenic | 50.0% | |
GATTGAGTTCCAGACTCTGG+CGG | - | chr8.4:80872878-80872897 | None:intergenic | 50.0% | |
TAAGGGACACAAATGCCCTC+GGG | - | chr8.4:80872294-80872313 | None:intergenic | 50.0% | |
TGGCTGATCATAATCGTCGC+AGG | + | chr8.4:80872619-80872638 | MS.gene62778:CDS | 50.0% | |
TTGTTGAAGGGCTTGGGCTT+TGG | - | chr8.4:80872958-80872977 | None:intergenic | 50.0% | |
! | AGCACAAAACAGCGGTGTTG+GGG | + | chr8.4:80872175-80872194 | MS.gene62778:intron | 50.0% |
! | GACAACTACCTTAACGGACC+TGG | + | chr8.4:80871298-80871317 | MS.gene62778:CDS | 50.0% |
! | TCTAGAGCCCACGAAGTCTA+TGG | - | chr8.4:80871599-80871618 | None:intergenic | 50.0% |
!! | AAGCAGTTGATGACCCTCCA+TGG | - | chr8.4:80871453-80871472 | None:intergenic | 50.0% |
!! | ACTGATGGATATGGTGCTGC+TGG | - | chr8.4:80871408-80871427 | None:intergenic | 50.0% |
!! | CCTCGGATTTTGGTACAAGG+AGG | - | chr8.4:80871564-80871583 | None:intergenic | 50.0% |
!! | CTGATGGATATGGTGCTGCT+GGG | - | chr8.4:80871407-80871426 | None:intergenic | 50.0% |
!! | TAAACTGGTTGTGGTGGTGG+TGG | - | chr8.4:80871375-80871394 | None:intergenic | 50.0% |
AAGAGGGTCAAGGGAGAGCA+TGG | - | chr8.4:80871509-80871528 | None:intergenic | 55.0% | |
AGTCAACCCAGCTGCAACGA+CGG | - | chr8.4:80871833-80871852 | None:intergenic | 55.0% | |
CATGACCAGGAAGAGGGTCA+AGG | - | chr8.4:80871519-80871538 | None:intergenic | 55.0% | |
CCACAACCAGTTTAGCCCAC+AGG | + | chr8.4:80871381-80871400 | MS.gene62778:CDS | 55.0% | |
CCATGTCCATGACCAGGAAG+AGG | - | chr8.4:80871526-80871545 | None:intergenic | 55.0% | |
CCATGTCCATGTCCATGACC+AGG | - | chr8.4:80871532-80871551 | None:intergenic | 55.0% | |
CCTCTTCCTGGTCATGGACA+TGG | + | chr8.4:80871523-80871542 | MS.gene62778:CDS | 55.0% | |
CCTGGTCATGGACATGGACA+TGG | + | chr8.4:80871529-80871548 | MS.gene62778:CDS | 55.0% | |
CTTGACCCTCTTCCTGGTCA+TGG | + | chr8.4:80871517-80871536 | MS.gene62778:CDS | 55.0% | |
GAAGGAGGTTGTGGTTGAGG+TGG | - | chr8.4:80871487-80871506 | None:intergenic | 55.0% | |
GAGGTTGTGGTTGAGGTGGA+GGG | - | chr8.4:80871483-80871502 | None:intergenic | 55.0% | |
GGCTAAACTGGTTGTGGTGG+TGG | - | chr8.4:80871378-80871397 | None:intergenic | 55.0% | |
GTCTAGACCGACGGTAAAGG+CGG | - | chr8.4:80871678-80871697 | None:intergenic | 55.0% | |
GTGGGTCGAAGAAGGACTGA+TGG | - | chr8.4:80871423-80871442 | None:intergenic | 55.0% | |
GTGGTCTAGACCGACGGTAA+AGG | - | chr8.4:80871681-80871700 | None:intergenic | 55.0% | |
GTTCAGGTGGTCTAGACCGA+CGG | - | chr8.4:80871687-80871706 | None:intergenic | 55.0% | |
TACATCGTCGGTGACAGTGG+CGG | + | chr8.4:80872898-80872917 | MS.gene62778:CDS | 55.0% | |
TCAGTCCTTCTTCGACCCAC+GGG | + | chr8.4:80871423-80871442 | MS.gene62778:CDS | 55.0% | |
TCGGTCTAGACCACCTGAAC+CGG | + | chr8.4:80871687-80871706 | MS.gene62778:CDS | 55.0% | |
TTGAGTTCCAGACTCTGGCG+GGG | - | chr8.4:80872876-80872895 | None:intergenic | 55.0% | |
! | AAACAGCGGTGTTGGGGGAT+AGG | + | chr8.4:80872181-80872200 | MS.gene62778:intron | 55.0% |
! | AACAGCGGTGTTGGGGGATA+GGG | + | chr8.4:80872182-80872201 | MS.gene62778:intron | 55.0% |
! | AGAAGTATGTGCGGCCACCA+AGG | - | chr8.4:80871633-80871652 | None:intergenic | 55.0% |
! | CCTGTGGGCTAAACTGGTTG+TGG | - | chr8.4:80871384-80871403 | None:intergenic | 55.0% |
! | GAGAGCATGGAAGGAGGTTG+TGG | - | chr8.4:80871496-80871515 | None:intergenic | 55.0% |
! | GCACAAAACAGCGGTGTTGG+GGG | + | chr8.4:80872176-80872195 | MS.gene62778:intron | 55.0% |
! | GTGGGCTAAACTGGTTGTGG+TGG | - | chr8.4:80871381-80871400 | None:intergenic | 55.0% |
! | TACCTTAACGGACCTGGTGC+TGG | + | chr8.4:80871304-80871323 | MS.gene62778:CDS | 55.0% |
! | TCAAGGGAGAGCATGGAAGG+AGG | - | chr8.4:80871502-80871521 | None:intergenic | 55.0% |
! | TTGCAGCTGGGTTGACTCAG+CGG | + | chr8.4:80871836-80871855 | MS.gene62778:CDS | 55.0% |
!! | GACTTCGTGGGCTCTAGACT+TGG | + | chr8.4:80871601-80871620 | MS.gene62778:CDS | 55.0% |
!! | TTCAAACTCGCCTCGGTGTC+AGG | + | chr8.4:80871723-80871742 | MS.gene62778:CDS | 55.0% |
ACCCACGGGCTTTCCATGGA+GGG | + | chr8.4:80871437-80871456 | MS.gene62778:CDS | 60.0% | |
ACCCTCCATGGAAAGCCCGT+GGG | - | chr8.4:80871441-80871460 | None:intergenic | 60.0% | |
CACAAACTTTGTGGCGGCGG+TGG | - | chr8.4:80871789-80871808 | None:intergenic | 60.0% | |
CATGGACATGGACATGGCCC+TGG | + | chr8.4:80871535-80871554 | MS.gene62778:CDS | 60.0% | |
CGGTCTAGACCACCTGAACC+GGG | + | chr8.4:80871688-80871707 | MS.gene62778:CDS | 60.0% | |
CTCTCCCTTGACCCTCTTCC+TGG | + | chr8.4:80871511-80871530 | MS.gene62778:CDS | 60.0% | |
GAAAGCCCGTGGGTCGAAGA+AGG | - | chr8.4:80871431-80871450 | None:intergenic | 60.0% | |
GAACCTGTCGAACCCGGTTC+AGG | - | chr8.4:80871703-80871722 | None:intergenic | 60.0% | |
GACAGTGGCGGTTTCTCCAC+CGG | + | chr8.4:80872910-80872929 | MS.gene62778:CDS | 60.0% | |
GCGGCTCACGAAGTCGTCTT+CGG | - | chr8.4:80871659-80871678 | None:intergenic | 60.0% | |
GGAGGTTGTGGTTGAGGTGG+AGG | - | chr8.4:80871484-80871503 | None:intergenic | 60.0% | |
GGTTCTGCCAGCAATGCAGC+AGG | + | chr8.4:80871857-80871876 | MS.gene62778:CDS | 60.0% | |
GTCCAGCACCAGGTCCGTTA+AGG | - | chr8.4:80871309-80871328 | None:intergenic | 60.0% | |
GTGTTGGGGGATAGGGGAGA+AGG | + | chr8.4:80872189-80872208 | MS.gene62778:intron | 60.0% | |
TCGTGAGCCGCCTTTACCGT+CGG | + | chr8.4:80871668-80871687 | MS.gene62778:CDS | 60.0% | |
TGGGGGATAGGGGAGAAGGT+TGG | + | chr8.4:80872193-80872212 | MS.gene62778:intron | 60.0% | |
TTCGACCCACGGGCTTTCCA+TGG | + | chr8.4:80871433-80871452 | MS.gene62778:CDS | 60.0% | |
TTGATCGGAGGCTGCTGCTG+CGG | - | chr8.4:80871230-80871249 | None:intergenic | 60.0% | |
! | ACAGCGGTGTTGGGGGATAG+GGG | + | chr8.4:80872183-80872202 | MS.gene62778:intron | 60.0% |
! | GGGTCAAGGGAGAGCATGGA+AGG | - | chr8.4:80871505-80871524 | None:intergenic | 60.0% |
! | TTGACGGTGGGCTTGATCGG+AGG | - | chr8.4:80871242-80871261 | None:intergenic | 60.0% |
!! | ACTGGTTGTGGTGGTGGTGG+TGG | - | chr8.4:80871372-80871391 | None:intergenic | 60.0% |
!! | ATATGGTGCTGCTGGGCCTG+TGG | - | chr8.4:80871400-80871419 | None:intergenic | 60.0% |
!! | TATGGTGCTGCTGGGCCTGT+GGG | - | chr8.4:80871399-80871418 | None:intergenic | 60.0% |
CAACCCAGCTGCAACGACGG+TGG | - | chr8.4:80871830-80871849 | None:intergenic | 65.0% | |
CAACCTTCGGCCTGACACCG+AGG | - | chr8.4:80871736-80871755 | None:intergenic | 65.0% | |
CAGCCACCGTCGTTGCAGCT+GGG | + | chr8.4:80871824-80871843 | MS.gene62778:CDS | 65.0% | |
CCACCTGAACCGGGTTCGAC+AGG | + | chr8.4:80871697-80871716 | MS.gene62778:CDS | 65.0% | |
CCTGTCGAACCCGGTTCAGG+TGG | - | chr8.4:80871700-80871719 | None:intergenic | 65.0% | |
GAAGGATCCCCGCCAGAGTC+TGG | + | chr8.4:80872866-80872885 | MS.gene62778:intron | 65.0% | |
GACCCACGGGCTTTCCATGG+AGG | + | chr8.4:80871436-80871455 | MS.gene62778:CDS | 65.0% | |
GACCCTCCATGGAAAGCCCG+TGG | - | chr8.4:80871442-80871461 | None:intergenic | 65.0% | |
TGCAACGACGGTGGCTGCCT+TGG | - | chr8.4:80871821-80871840 | None:intergenic | 65.0% | |
! | GCTGGGCCTGTGGGCTAAAC+TGG | - | chr8.4:80871390-80871409 | None:intergenic | 65.0% |
!! | TCGATGGTGGGTCCAGCACC+AGG | - | chr8.4:80871319-80871338 | None:intergenic | 65.0% |
ATCGGAGGCTGCTGCTGCGG+CGG | - | chr8.4:80871227-80871246 | None:intergenic | 70.0% | |
GCAGCCACCGTCGTTGCAGC+TGG | + | chr8.4:80871823-80871842 | MS.gene62778:CDS | 70.0% | |
!! | TCGCCTCGGTGTCAGGCCGA+AGG | + | chr8.4:80871730-80871749 | MS.gene62778:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 80871160 | 80873005 | 80871160 | ID=MS.gene62778 |
chr8.4 | mRNA | 80871160 | 80873005 | 80871160 | ID=MS.gene62778.t1;Parent=MS.gene62778 |
chr8.4 | exon | 80871160 | 80871878 | 80871160 | ID=MS.gene62778.t1.exon1;Parent=MS.gene62778.t1 |
chr8.4 | CDS | 80871160 | 80871878 | 80871160 | ID=cds.MS.gene62778.t1;Parent=MS.gene62778.t1 |
chr8.4 | exon | 80872566 | 80872711 | 80872566 | ID=MS.gene62778.t1.exon2;Parent=MS.gene62778.t1 |
chr8.4 | CDS | 80872566 | 80872711 | 80872566 | ID=cds.MS.gene62778.t1;Parent=MS.gene62778.t1 |
chr8.4 | exon | 80872870 | 80873005 | 80872870 | ID=MS.gene62778.t1.exon3;Parent=MS.gene62778.t1 |
chr8.4 | CDS | 80872870 | 80873005 | 80872870 | ID=cds.MS.gene62778.t1;Parent=MS.gene62778.t1 |
Gene Sequence |
Protein sequence |