Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63186.t1 | XP_013445800.1 | 99.4 | 325 | 2 | 0 | 1 | 325 | 1 | 325 | 3.60E-189 | 670.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63186.t1 | P49730 | 82.4 | 329 | 54 | 1 | 1 | 325 | 1 | 329 | 1.1e-159 | 563.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63186.t1 | A0A072TRK2 | 99.4 | 325 | 2 | 0 | 1 | 325 | 1 | 325 | 2.6e-189 | 670.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049989 | MS.gene63186 | 0.819336 | 1.23E-52 | -1.69E-46 |
MS.gene050297 | MS.gene63186 | 0.826642 | 2.43E-54 | -1.69E-46 |
MS.gene051629 | MS.gene63186 | 0.80171 | 7.92E-49 | -1.69E-46 |
MS.gene052367 | MS.gene63186 | 0.821577 | 3.75E-53 | -1.69E-46 |
MS.gene055957 | MS.gene63186 | 0.800249 | 1.57E-48 | -1.69E-46 |
MS.gene056041 | MS.gene63186 | 0.802779 | 4.77E-49 | -1.69E-46 |
MS.gene058196 | MS.gene63186 | 0.800357 | 1.50E-48 | -1.69E-46 |
MS.gene059300 | MS.gene63186 | 0.810664 | 1.03E-50 | -1.69E-46 |
MS.gene060565 | MS.gene63186 | 0.801772 | 7.69E-49 | -1.69E-46 |
MS.gene061260 | MS.gene63186 | 0.814332 | 1.63E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene63186 | MS.gene37310 | PPI |
MS.gene63186 | MS.gene034044 | PPI |
MS.gene63186 | MS.gene034046 | PPI |
MS.gene63186 | MS.gene026793 | PPI |
MS.gene79484 | MS.gene63186 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63186.t1 | MTR_8g469010 | 99.385 | 325 | 2 | 0 | 1 | 325 | 1 | 325 | 0.0 | 673 |
MS.gene63186.t1 | MTR_1g050472 | 91.818 | 330 | 22 | 1 | 1 | 325 | 1 | 330 | 0.0 | 632 |
MS.gene63186.t1 | MTR_0268s0080 | 91.515 | 330 | 23 | 1 | 1 | 325 | 1 | 330 | 0.0 | 632 |
MS.gene63186.t1 | MTR_7g029110 | 91.212 | 330 | 24 | 1 | 1 | 325 | 1 | 330 | 0.0 | 610 |
MS.gene63186.t1 | MTR_4g117370 | 75.926 | 324 | 74 | 1 | 6 | 325 | 18 | 341 | 0.0 | 529 |
MS.gene63186.t1 | MTR_6g005270 | 69.767 | 43 | 13 | 0 | 265 | 307 | 25 | 67 | 3.61e-14 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63186.t1 | AT3G27060 | 81.024 | 332 | 56 | 3 | 1 | 325 | 1 | 332 | 0.0 | 537 |
MS.gene63186.t1 | AT3G23580 | 76.543 | 324 | 72 | 1 | 6 | 325 | 18 | 341 | 0.0 | 520 |
Find 62 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCGAAGCGCGTGCATTCTA+TGG | 0.247434 | 8.4:+41048770 | MS.gene63186:CDS |
ATGCACGCGCTTCGGAGATT+TGG | 0.254019 | 8.4:-41048763 | None:intergenic |
CGCTTCCTTGCGCGTTGGTT+GGG | 0.300830 | 8.4:+41049221 | MS.gene63186:CDS |
GTTTGTTGCTGATAGGTTAT+TGG | 0.303774 | 8.4:+41049276 | MS.gene63186:CDS |
GGAGCGAGAAGAGGTTCTTC+TGG | 0.345478 | 8.4:-41048506 | None:intergenic |
GTTGCTTTCGCTTGTGTTGA+AGG | 0.362449 | 8.4:+41048977 | MS.gene63186:CDS |
GCGCTTCCTTGCGCGTTGGT+TGG | 0.363506 | 8.4:+41049220 | MS.gene63186:CDS |
AAGCTGATTGGGCTTTGAAA+TGG | 0.371966 | 8.4:+41048921 | MS.gene63186:CDS |
TTTGTTGCTGATAGGTTATT+GGG | 0.379609 | 8.4:+41049277 | MS.gene63186:CDS |
ATGCAGAATCGGTCTGGGTT+TGG | 0.382220 | 8.4:-41048527 | None:intergenic |
TGCTGATTATTGCTTTACTT+TGG | 0.386701 | 8.4:+41049435 | MS.gene63186:CDS |
ATGTTCAGAACCCGTTTGAT+TGG | 0.399675 | 8.4:+41049326 | MS.gene63186:CDS |
GAAAATCGCGCAGAAGCTTC+CGG | 0.409737 | 8.4:-41049011 | None:intergenic |
ACCATAGAATGCACGCGCTT+CGG | 0.410941 | 8.4:-41048771 | None:intergenic |
TGCGCGTTGGTTGGGATGAA+TGG | 0.417042 | 8.4:+41049229 | MS.gene63186:CDS |
GGGAACATGCAGAATCGGTC+TGG | 0.418807 | 8.4:-41048533 | None:intergenic |
GAGCGAGAAGAGGTTCTTCT+GGG | 0.439709 | 8.4:-41048505 | None:intergenic |
GACTTCTTTCATGAATCTCC+CGG | 0.450969 | 8.4:-41048741 | None:intergenic |
ATCAAATCCATCCAATCAAA+CGG | 0.451073 | 8.4:-41049337 | None:intergenic |
TCAGAACCCGTTTGATTGGA+TGG | 0.454228 | 8.4:+41049330 | MS.gene63186:CDS |
TATTGCTAAGAAAGCTGATT+GGG | 0.465189 | 8.4:+41048910 | MS.gene63186:CDS |
AATCGCTTATATACGTTTCG+AGG | 0.468396 | 8.4:-41048841 | None:intergenic |
GCCTTCTTCGCCGCTTCCGA+CGG | 0.470916 | 8.4:+41048698 | MS.gene63186:CDS |
ACCGTCGGAAGCGGCGAAGA+AGG | 0.474533 | 8.4:-41048699 | None:intergenic |
ATGGATTTGATTTCGCTTCA+AGG | 0.479094 | 8.4:+41049349 | MS.gene63186:CDS |
GATAGGTTATTGGGTGAACT+TGG | 0.489753 | 8.4:+41049286 | MS.gene63186:CDS |
GGAACATGCAGAATCGGTCT+GGG | 0.489835 | 8.4:-41048532 | None:intergenic |
ATATTGAGTTTGTTGCTGAT+AGG | 0.493329 | 8.4:+41049269 | MS.gene63186:CDS |
GGAGGAAAGATCGACTTCTT+CGG | 0.499480 | 8.4:-41048615 | None:intergenic |
TCAAATCCATCCAATCAAAC+GGG | 0.500850 | 8.4:-41049336 | None:intergenic |
TTATTGCTTTACTTTGGATG+AGG | 0.510830 | 8.4:+41049441 | MS.gene63186:CDS |
TTTCCTCCGATCTTCAACAC+TGG | 0.515193 | 8.4:+41048630 | MS.gene63186:CDS |
GTATTGCTAAGAAAGCTGAT+TGG | 0.515724 | 8.4:+41048909 | MS.gene63186:CDS |
GGCGGTCCAGAAAGAAGCTT+CGG | 0.516341 | 8.4:-41048594 | None:intergenic |
CAGAAAGCTTCTGTTATGAA+TGG | 0.519026 | 8.4:+41049409 | MS.gene63186:CDS |
GGATTGGGAACATGCAGAAT+CGG | 0.521690 | 8.4:-41048538 | None:intergenic |
GTGATGCAGTTGAGATTGAA+AGG | 0.522321 | 8.4:+41049182 | MS.gene63186:CDS |
ATCGTCCTCGAAAACCTCGC+CGG | 0.534897 | 8.4:+41048722 | MS.gene63186:CDS |
AGAGGTTCTTCTGGGAAAGA+AGG | 0.536510 | 8.4:-41048497 | None:intergenic |
TGAAATAAGCTCGTTTGAGA+AGG | 0.538441 | 8.4:-41049068 | None:intergenic |
TCGTCCTCGAAAACCTCGCC+GGG | 0.543275 | 8.4:+41048723 | MS.gene63186:CDS |
CGATGCGCTTCCTTGCGCGT+TGG | 0.545347 | 8.4:+41049216 | MS.gene63186:CDS |
TGGATTTGATTTCGCTTCAA+GGG | 0.551257 | 8.4:+41049350 | MS.gene63186:CDS |
GTTGTTCCAGTGTTGAAGAT+CGG | 0.557909 | 8.4:-41048636 | None:intergenic |
GACGAAGTGGCGTTCGCCGT+CGG | 0.563379 | 8.4:-41048663 | None:intergenic |
GAGGACGATACCGTCGGAAG+CGG | 0.563447 | 8.4:-41048708 | None:intergenic |
TCTGGGTTTGGAGCGAGAAG+AGG | 0.577657 | 8.4:-41048515 | None:intergenic |
TGATGCAGTTGAGATTGAAA+GGG | 0.582117 | 8.4:+41049183 | MS.gene63186:CDS |
TCGTTTGAGAAGGTTAATCC+CGG | 0.587906 | 8.4:-41049058 | None:intergenic |
TTCATCCCAACCAACGCGCA+AGG | 0.598863 | 8.4:-41049226 | None:intergenic |
CGGAAGCGGCGAAGAAGGCG+AGG | 0.605540 | 8.4:-41048694 | None:intergenic |
GAGCTTATTTCACGTGACGA+AGG | 0.607473 | 8.4:+41049079 | MS.gene63186:CDS |
CTTTCATGAATCTCCCGGCG+AGG | 0.609684 | 8.4:-41048736 | None:intergenic |
CACTGGAACAACCTCACCGA+CGG | 0.611309 | 8.4:+41048647 | MS.gene63186:CDS |
AGTGGCGTTCGCCGTCGGTG+AGG | 0.618653 | 8.4:-41048658 | None:intergenic |
GTTCCAGTGTTGAAGATCGG+AGG | 0.622372 | 8.4:-41048633 | None:intergenic |
CGAGGATGTGAGAGACGAAG+TGG | 0.630959 | 8.4:-41048676 | None:intergenic |
TCAGCTTTCTTAGCAATACA+CGG | 0.642160 | 8.4:-41048905 | None:intergenic |
GAAGCTGAGTACAGAGCGCG+TGG | 0.656345 | 8.4:+41049147 | MS.gene63186:CDS |
AAAGCTTCTGTTATGAATGG+TGG | 0.674687 | 8.4:+41049412 | MS.gene63186:CDS |
GGAAAGATCGACTTCTTCGG+CGG | 0.687608 | 8.4:-41048612 | None:intergenic |
GAAGAGAATACATCTCAGAG+TGG | 0.694344 | 8.4:-41048817 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AATCCAATACCCAAAAATCT+GGG | + | chr8.4:41048556-41048575 | MS.gene63186:CDS | 30.0% | |
ATCAAATCCATCCAATCAAA+CGG | - | chr8.4:41049340-41049359 | None:intergenic | 30.0% | |
TATTGCTAAGAAAGCTGATT+GGG | + | chr8.4:41048910-41048929 | MS.gene63186:CDS | 30.0% | |
TTATTGCTTTACTTTGGATG+AGG | + | chr8.4:41049441-41049460 | MS.gene63186:CDS | 30.0% | |
TTTGTTGCTGATAGGTTATT+GGG | + | chr8.4:41049277-41049296 | MS.gene63186:CDS | 30.0% | |
! | TGCTGATTATTGCTTTACTT+TGG | + | chr8.4:41049435-41049454 | MS.gene63186:CDS | 30.0% |
! | TGTACATTTCCCAGATTTTT+GGG | - | chr8.4:41048568-41048587 | None:intergenic | 30.0% |
! | TTGTACATTTCCCAGATTTT+TGG | - | chr8.4:41048569-41048588 | None:intergenic | 30.0% |
!! | ATATTGAGTTTGTTGCTGAT+AGG | + | chr8.4:41049269-41049288 | MS.gene63186:CDS | 30.0% |
!!! | AGATTTTTGGGTATTGGATT+GGG | - | chr8.4:41048556-41048575 | None:intergenic | 30.0% |
!!! | ATTTTCTGGTTGAAAAAACG+TGG | + | chr8.4:41049028-41049047 | MS.gene63186:CDS | 30.0% |
AAAAAACGTGGTTTAATGCC+GGG | + | chr8.4:41049040-41049059 | MS.gene63186:CDS | 35.0% | |
AAAGCTTCTGTTATGAATGG+TGG | + | chr8.4:41049412-41049431 | MS.gene63186:CDS | 35.0% | |
AATCGCTTATATACGTTTCG+AGG | - | chr8.4:41048844-41048863 | None:intergenic | 35.0% | |
CAATCCAATACCCAAAAATC+TGG | + | chr8.4:41048555-41048574 | MS.gene63186:CDS | 35.0% | |
CAGAAAGCTTCTGTTATGAA+TGG | + | chr8.4:41049409-41049428 | MS.gene63186:CDS | 35.0% | |
GAAAAAACGTGGTTTAATGC+CGG | + | chr8.4:41049039-41049058 | MS.gene63186:CDS | 35.0% | |
GTATTGCTAAGAAAGCTGAT+TGG | + | chr8.4:41048909-41048928 | MS.gene63186:CDS | 35.0% | |
TCAAATCCATCCAATCAAAC+GGG | - | chr8.4:41049339-41049358 | None:intergenic | 35.0% | |
TCAGCTTTCTTAGCAATACA+CGG | - | chr8.4:41048908-41048927 | None:intergenic | 35.0% | |
TGAAATAAGCTCGTTTGAGA+AGG | - | chr8.4:41049071-41049090 | None:intergenic | 35.0% | |
TGATGCAGTTGAGATTGAAA+GGG | + | chr8.4:41049183-41049202 | MS.gene63186:CDS | 35.0% | |
! | ATGGATTTGATTTCGCTTCA+AGG | + | chr8.4:41049349-41049368 | MS.gene63186:CDS | 35.0% |
! | GTTGAAGGAATTTTCTTCTC+CGG | + | chr8.4:41048992-41049011 | MS.gene63186:CDS | 35.0% |
! | GTTTGTTGCTGATAGGTTAT+TGG | + | chr8.4:41049276-41049295 | MS.gene63186:CDS | 35.0% |
! | TGGATTTGATTTCGCTTCAA+GGG | + | chr8.4:41049350-41049369 | MS.gene63186:CDS | 35.0% |
!!! | AATTTTTTTGAGAAGCGCGT+TGG | + | chr8.4:41049379-41049398 | MS.gene63186:CDS | 35.0% |
!!! | ATTTTTTTGAGAAGCGCGTT+GGG | + | chr8.4:41049380-41049399 | MS.gene63186:CDS | 35.0% |
!!! | CAGATTTTTGGGTATTGGAT+TGG | - | chr8.4:41048557-41048576 | None:intergenic | 35.0% |
!!! | TTTCCCAGATTTTTGGGTAT+TGG | - | chr8.4:41048562-41048581 | None:intergenic | 35.0% |
AAAAAGCCGAAGCTTCTTTC+TGG | + | chr8.4:41048588-41048607 | MS.gene63186:CDS | 40.0% | |
ATGTTCAGAACCCGTTTGAT+TGG | + | chr8.4:41049326-41049345 | MS.gene63186:CDS | 40.0% | |
GAAGAGAATACATCTCAGAG+TGG | - | chr8.4:41048820-41048839 | None:intergenic | 40.0% | |
GACTTCTTTCATGAATCTCC+CGG | - | chr8.4:41048744-41048763 | None:intergenic | 40.0% | |
GATAGGTTATTGGGTGAACT+TGG | + | chr8.4:41049286-41049305 | MS.gene63186:CDS | 40.0% | |
GTGATGCAGTTGAGATTGAA+AGG | + | chr8.4:41049182-41049201 | MS.gene63186:CDS | 40.0% | |
TCGTTTGAGAAGGTTAATCC+CGG | - | chr8.4:41049061-41049080 | None:intergenic | 40.0% | |
! | GGATGTTTTCAATAGCGATC+TGG | - | chr8.4:41048799-41048818 | None:intergenic | 40.0% |
! | GTTGTTCCAGTGTTGAAGAT+CGG | - | chr8.4:41048639-41048658 | None:intergenic | 40.0% |
!! | AAGCTGATTGGGCTTTGAAA+TGG | + | chr8.4:41048921-41048940 | MS.gene63186:CDS | 40.0% |
!!! | TTTTTTTGAGAAGCGCGTTG+GGG | + | chr8.4:41049381-41049400 | MS.gene63186:CDS | 40.0% |
GAGCTTATTTCACGTGACGA+AGG | + | chr8.4:41049079-41049098 | MS.gene63186:CDS | 45.0% | |
GGATTGGGAACATGCAGAAT+CGG | - | chr8.4:41048541-41048560 | None:intergenic | 45.0% | |
TCAGAACCCGTTTGATTGGA+TGG | + | chr8.4:41049330-41049349 | MS.gene63186:CDS | 45.0% | |
TTTCCTCCGATCTTCAACAC+TGG | + | chr8.4:41048630-41048649 | MS.gene63186:CDS | 45.0% | |
! | AGAGGTTCTTCTGGGAAAGA+AGG | - | chr8.4:41048500-41048519 | None:intergenic | 45.0% |
! | GGAGGAAAGATCGACTTCTT+CGG | - | chr8.4:41048618-41048637 | None:intergenic | 45.0% |
! | GTTGCTTTCGCTTGTGTTGA+AGG | + | chr8.4:41048977-41048996 | MS.gene63186:CDS | 45.0% |
ACCATAGAATGCACGCGCTT+CGG | - | chr8.4:41048774-41048793 | None:intergenic | 50.0% | |
ATGCAGAATCGGTCTGGGTT+TGG | - | chr8.4:41048530-41048549 | None:intergenic | 50.0% | |
GAAAATCGCGCAGAAGCTTC+CGG | - | chr8.4:41049014-41049033 | None:intergenic | 50.0% | |
GAGCGAGAAGAGGTTCTTCT+GGG | - | chr8.4:41048508-41048527 | None:intergenic | 50.0% | |
GGAACATGCAGAATCGGTCT+GGG | - | chr8.4:41048535-41048554 | None:intergenic | 50.0% | |
! | GAAGCTTCTGCGCGATTTTC+TGG | + | chr8.4:41049014-41049033 | MS.gene63186:CDS | 50.0% |
! | GGAAAGATCGACTTCTTCGG+CGG | - | chr8.4:41048615-41048634 | None:intergenic | 50.0% |
! | GTTCCAGTGTTGAAGATCGG+AGG | - | chr8.4:41048636-41048655 | None:intergenic | 50.0% |
!! | GTTTTCGAGGACGATACCGT+CGG | - | chr8.4:41048717-41048736 | None:intergenic | 50.0% |
ATCGTCCTCGAAAACCTCGC+CGG | + | chr8.4:41048722-41048741 | MS.gene63186:CDS | 55.0% | |
ATGCACGCGCTTCGGAGATT+TGG | - | chr8.4:41048766-41048785 | None:intergenic | 55.0% | |
CACTGGAACAACCTCACCGA+CGG | + | chr8.4:41048647-41048666 | MS.gene63186:CDS | 55.0% | |
CGAGGATGTGAGAGACGAAG+TGG | - | chr8.4:41048679-41048698 | None:intergenic | 55.0% | |
CTTTCATGAATCTCCCGGCG+AGG | - | chr8.4:41048739-41048758 | None:intergenic | 55.0% | |
GGAGCGAGAAGAGGTTCTTC+TGG | - | chr8.4:41048509-41048528 | None:intergenic | 55.0% | |
GGCGGTCCAGAAAGAAGCTT+CGG | - | chr8.4:41048597-41048616 | None:intergenic | 55.0% | |
GGGAACATGCAGAATCGGTC+TGG | - | chr8.4:41048536-41048555 | None:intergenic | 55.0% | |
TCCGAAGCGCGTGCATTCTA+TGG | + | chr8.4:41048770-41048789 | MS.gene63186:CDS | 55.0% | |
TTCATCCCAACCAACGCGCA+AGG | - | chr8.4:41049229-41049248 | None:intergenic | 55.0% | |
! | TCTGGGTTTGGAGCGAGAAG+AGG | - | chr8.4:41048518-41048537 | None:intergenic | 55.0% |
!! | TGCGCGTTGGTTGGGATGAA+TGG | + | chr8.4:41049229-41049248 | MS.gene63186:CDS | 55.0% |
GAAGCTGAGTACAGAGCGCG+TGG | + | chr8.4:41049147-41049166 | MS.gene63186:CDS | 60.0% | |
GAGGACGATACCGTCGGAAG+CGG | - | chr8.4:41048711-41048730 | None:intergenic | 60.0% | |
TCGTCCTCGAAAACCTCGCC+GGG | + | chr8.4:41048723-41048742 | MS.gene63186:CDS | 60.0% | |
! | ATCTCCCGGCGAGGTTTTCG+AGG | - | chr8.4:41048730-41048749 | None:intergenic | 60.0% |
!! | CGCTTCCTTGCGCGTTGGTT+GGG | + | chr8.4:41049221-41049240 | MS.gene63186:CDS | 60.0% |
ACCGTCGGAAGCGGCGAAGA+AGG | - | chr8.4:41048702-41048721 | None:intergenic | 65.0% | |
CGATGCGCTTCCTTGCGCGT+TGG | + | chr8.4:41049216-41049235 | MS.gene63186:CDS | 65.0% | |
GACGAAGTGGCGTTCGCCGT+CGG | - | chr8.4:41048666-41048685 | None:intergenic | 65.0% | |
GCCTTCTTCGCCGCTTCCGA+CGG | + | chr8.4:41048698-41048717 | MS.gene63186:CDS | 65.0% | |
! | GCGCTTCCTTGCGCGTTGGT+TGG | + | chr8.4:41049220-41049239 | MS.gene63186:CDS | 65.0% |
AGTGGCGTTCGCCGTCGGTG+AGG | - | chr8.4:41048661-41048680 | None:intergenic | 70.0% | |
CGGAAGCGGCGAAGAAGGCG+AGG | - | chr8.4:41048697-41048716 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 41048494 | 41049471 | 41048494 | ID=MS.gene63186 |
chr8.4 | mRNA | 41048494 | 41049471 | 41048494 | ID=MS.gene63186.t1;Parent=MS.gene63186 |
chr8.4 | exon | 41048494 | 41049471 | 41048494 | ID=MS.gene63186.t1.exon1;Parent=MS.gene63186.t1 |
chr8.4 | CDS | 41048494 | 41049471 | 41048494 | ID=cds.MS.gene63186.t1;Parent=MS.gene63186.t1 |
Gene Sequence |
Protein sequence |