AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63471

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63471.t1 MTR_3g067945 99.444 720 4 0 1 720 1 720 0.0 1486
MS.gene63471.t1 MTR_3g095530 30.279 251 156 7 21 267 9 244 2.74e-22 100
MS.gene63471.t1 MTR_3g095530 34.426 122 77 2 586 707 250 368 1.10e-15 80.1
MS.gene63471.t1 MTR_6g004000 29.482 251 158 7 21 267 9 244 5.19e-22 99.0
MS.gene63471.t1 MTR_6g004000 31.967 122 80 2 586 707 250 368 6.67e-15 77.4
MS.gene63471.t1 MTR_7g093260 29.482 251 158 7 21 267 9 244 1.48e-21 97.8
MS.gene63471.t1 MTR_7g093260 34.426 122 77 2 586 707 250 368 1.63e-15 79.3
MS.gene63471.t1 MTR_7g026230 29.084 251 159 7 21 267 9 244 1.51e-21 97.8
MS.gene63471.t1 MTR_7g026230 33.607 122 78 2 586 707 250 368 4.86e-15 78.2
MS.gene63471.t1 MTR_2g008050 29.915 234 143 7 21 247 9 228 1.53e-21 97.8
MS.gene63471.t1 MTR_2g008050 34.426 122 77 2 586 707 250 368 1.54e-15 79.3
MS.gene63471.t1 MTR_0015s0130 29.084 251 159 7 21 267 9 244 9.19e-21 95.5
MS.gene63471.t1 MTR_0015s0130 33.607 122 78 2 586 707 250 368 3.64e-15 78.6
MS.gene63471.t1 MTR_2g096840 28.685 251 160 7 21 267 9 244 4.07e-20 93.6
MS.gene63471.t1 MTR_2g096840 33.607 122 78 2 586 707 250 368 7.96e-16 80.5
MS.gene63471.t1 MTR_7g027185 29.388 245 154 6 16 253 1 233 1.97e-18 88.2
MS.gene63471.t1 MTR_7g027185 29.388 245 154 6 16 253 1 233 2.19e-18 88.2
MS.gene63471.t1 MTR_7g027185 29.630 243 152 6 18 253 3 233 3.31e-18 86.7
MS.gene63471.t1 MTR_2g445210 36.429 140 84 2 566 705 292 426 1.02e-17 87.0
MS.gene63471.t1 MTR_8g089630 25.926 270 173 6 17 266 5 267 3.79e-14 75.9
MS.gene63471.t1 MTR_5g066400 26.891 238 143 7 19 231 7 238 2.85e-12 70.1
MS.gene63471.t1 MTR_5g066400 26.160 237 146 6 19 231 7 238 3.91e-12 69.3
MS.gene63471.t1 MTR_8g464900 26.891 238 142 8 19 231 7 237 4.94e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63471.t1 AT3G12380 71.901 726 193 3 1 719 1 722 0.0 1079
MS.gene63471.t1 AT3G12380 71.311 732 193 4 1 719 1 728 0.0 1072
MS.gene63471.t1 AT2G42100 30.544 239 139 7 19 247 8 229 4.98e-23 102
MS.gene63471.t1 AT2G42100 33.607 122 78 2 586 707 251 369 1.42e-14 76.6
MS.gene63471.t1 AT3G53750 30.279 251 156 7 21 267 9 244 9.05e-23 101
MS.gene63471.t1 AT3G53750 32.787 122 79 2 586 707 250 368 6.80e-15 77.8
MS.gene63471.t1 AT3G53750 30.279 251 156 7 21 267 9 244 9.05e-23 101
MS.gene63471.t1 AT3G53750 32.787 122 79 2 586 707 250 368 6.80e-15 77.8
MS.gene63471.t1 AT2G37620 30.279 251 156 7 21 267 9 244 9.05e-23 101
MS.gene63471.t1 AT2G37620 32.787 122 79 2 586 707 250 368 6.80e-15 77.8
MS.gene63471.t1 AT2G37620 30.279 251 156 7 21 267 9 244 9.05e-23 101
MS.gene63471.t1 AT2G37620 32.787 122 79 2 586 707 250 368 6.80e-15 77.8
MS.gene63471.t1 AT2G37620 30.279 251 156 7 21 267 9 244 9.05e-23 101
MS.gene63471.t1 AT2G37620 32.787 122 79 2 586 707 250 368 6.80e-15 77.8
MS.gene63471.t1 AT2G37620 30.279 251 156 7 21 267 9 244 9.05e-23 101
MS.gene63471.t1 AT2G37620 32.787 122 79 2 586 707 250 368 6.80e-15 77.8
MS.gene63471.t1 AT5G09810 30.279 251 156 7 21 267 9 244 2.82e-22 100
MS.gene63471.t1 AT5G09810 34.426 122 77 2 586 707 250 368 1.88e-15 79.3
MS.gene63471.t1 AT3G12110 30.342 234 142 7 21 247 9 228 6.78e-22 99.0
MS.gene63471.t1 AT3G12110 32.787 122 79 2 586 707 250 368 7.51e-15 77.4
MS.gene63471.t1 AT3G46520 29.915 234 143 7 21 247 9 228 2.99e-21 97.1
MS.gene63471.t1 AT3G46520 32.787 122 79 2 586 707 250 368 1.07e-13 73.9
MS.gene63471.t1 AT3G46520 29.915 234 143 7 21 247 9 228 2.99e-21 97.1
MS.gene63471.t1 AT3G46520 32.787 122 79 2 586 707 250 368 1.07e-13 73.9
MS.gene63471.t1 AT2G42090 27.935 247 156 6 21 267 3 227 6.86e-21 95.5
MS.gene63471.t1 AT2G42090 33.333 123 79 2 585 707 238 357 1.33e-12 70.5
MS.gene63471.t1 AT5G59370 29.437 231 148 6 21 247 9 228 9.45e-21 95.5
MS.gene63471.t1 AT5G59370 32.787 122 79 2 586 707 250 368 1.13e-13 73.9
MS.gene63471.t1 AT5G59370 29.437 231 148 6 21 247 9 228 9.45e-21 95.5
MS.gene63471.t1 AT5G59370 32.787 122 79 2 586 707 250 368 1.13e-13 73.9
MS.gene63471.t1 AT3G18780 30.342 234 142 7 21 247 9 228 1.15e-20 95.1
MS.gene63471.t1 AT3G18780 33.333 108 69 2 586 693 250 354 4.57e-13 72.0
MS.gene63471.t1 AT3G18780 30.342 234 142 7 21 247 9 228 1.40e-20 94.7
MS.gene63471.t1 AT3G18780 31.967 122 80 2 586 707 250 368 1.37e-14 76.6
MS.gene63471.t1 AT3G18780 30.342 234 142 7 21 247 9 228 1.40e-20 94.7
MS.gene63471.t1 AT3G18780 31.967 122 80 2 586 707 250 368 1.37e-14 76.6
MS.gene63471.t1 AT1G49240 30.342 234 142 7 21 247 9 228 1.47e-20 94.7
MS.gene63471.t1 AT1G49240 31.967 122 80 2 586 707 250 368 1.34e-14 76.6
MS.gene63471.t1 AT3G27000 30.417 240 146 8 22 253 7 233 6.13e-20 93.2
MS.gene63471.t1 AT3G33520 38.525 122 72 1 591 712 298 416 5.57e-18 87.4
MS.gene63471.t1 AT1G13180 28.148 270 167 8 17 266 4 266 4.65e-16 81.6
MS.gene63471.t1 AT2G42170 33.607 122 78 2 586 707 104 222 2.86e-14 73.6
MS.gene63471.t1 AT2G42170 30.303 132 84 3 116 247 57 180 4.76e-14 74.3
MS.gene63471.t1 AT2G42170 35.577 104 64 2 586 689 202 302 1.01e-11 67.4
MS.gene63471.t1 AT2G42170 30.303 132 84 3 116 247 57 180 4.76e-14 74.3
MS.gene63471.t1 AT2G42170 35.577 104 64 2 586 689 202 302 1.01e-11 67.4
MS.gene63471.t1 AT2G42170 33.607 122 78 2 586 707 202 320 5.84e-14 74.3
MS.gene63471.t1 AT2G42170 30.303 132 84 3 116 247 57 180 7.01e-14 73.9
MS.gene63471.t1 AT2G42170 33.607 122 78 2 586 707 202 320 5.84e-14 74.3
MS.gene63471.t1 AT2G42170 30.303 132 84 3 116 247 57 180 7.01e-14 73.9

Find 180 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGGATTGGCGTTGGATTT+TGG 0.159254 3.1:+56203551 None:intergenic
TTCAGAAGCTCGATTGTTTC+TGG 0.165498 3.1:-56200240 MS.gene63471:intron
CGACAGCTTCCTTTATAAAT+TGG 0.189204 3.1:+56200493 None:intergenic
CTCCGAAAGGTCCTTGTATT+TGG 0.211732 3.1:+56198986 None:intergenic
CCAATGGAGCTGCCACATTT+TGG 0.236456 3.1:+56200112 None:intergenic
TTTGGACTGAACAAAATTTC+AGG 0.251702 3.1:+56198408 None:intergenic
AACAATCTGAAAATCTTCTT+TGG 0.277742 3.1:+56198455 None:intergenic
GCGCTTCCTATTTCCGTATT+GGG 0.313695 3.1:-56203485 MS.gene63471:intron
GGAAAATGAATTACGTGGTT+TGG 0.322105 3.1:-56199961 MS.gene63471:CDS
CGCTACAACCCATGTGATTC+CGG 0.323877 3.1:-56201275 MS.gene63471:intron
AGGATGGATTATTATGAAAA+AGG 0.324137 3.1:-56198096 MS.gene63471:CDS
AGAGTACCCAATACGGAAAT+AGG 0.331001 3.1:+56203479 None:intergenic
CGAATGGGTGCAACAGGATC+AGG 0.331988 3.1:-56202321 MS.gene63471:CDS
AGTTCAATCTCGAAGTAAAA+TGG 0.346799 3.1:-56201720 MS.gene63471:CDS
CCAAAATGTGGCAGCTCCAT+TGG 0.349845 3.1:-56200112 MS.gene63471:CDS
CATAACAATGTTCCATCTTC+AGG 0.350576 3.1:+56200279 None:intergenic
TTGCGAGAAAGGCAGCAATA+AGG 0.354563 3.1:-56200049 MS.gene63471:CDS
GGCGCTTCCTATTTCCGTAT+TGG 0.360049 3.1:-56203486 MS.gene63471:CDS
AAGTTGCCAATCTTCATCTT+TGG 0.360116 3.1:+56198785 None:intergenic
GGAAGCTGTCGCACTAATAT+TGG 0.366748 3.1:-56200481 MS.gene63471:CDS
GACGGGGAACCAATTTATAA+AGG 0.369369 3.1:-56200502 MS.gene63471:CDS
TAGAGCACTTGATCCGGTTA+TGG 0.370466 3.1:-56198181 MS.gene63471:CDS
TCAGAAGGAGGCTCCTCAAC+TGG 0.380356 3.1:+56200080 None:intergenic
CAGTCCTTGCGGAAACAAAA+AGG 0.381377 3.1:-56199825 MS.gene63471:CDS
GGCTCCTCCACGAATGGAAA+TGG 0.391186 3.1:-56198927 MS.gene63471:CDS
GCTTCCACCAGTCACAAGTA+TGG 0.392619 3.1:+56198284 None:intergenic
TTTGATCGAATGGGTGCAAC+AGG 0.394008 3.1:-56202327 MS.gene63471:CDS
TTTGATAGCTTGTTGAAAAG+AGG 0.403014 3.1:-56199501 MS.gene63471:intron
AGGTCAAAGGTTGCGAGAAA+TGG 0.404209 3.1:-56200018 MS.gene63471:CDS
GCGTGGCGCCTCAGCAGGTT+GGG 0.405100 3.1:+56198491 None:intergenic
AGCTCTGTGTTATCCTCATC+TGG 0.405219 3.1:+56198720 None:intergenic
GAAGCGCTATGAAGAGGAAT+TGG 0.405469 3.1:-56199428 MS.gene63471:CDS
AATTGTTCCAAGTAAAGCTC+TGG 0.406389 3.1:+56199014 None:intergenic
TGGGAGCTACTTTCTACCTT+GGG 0.410072 3.1:+56198510 None:intergenic
TGATCAACTCCAATCCAGTT+TGG 0.410760 3.1:+56198390 None:intergenic
TTGGGAGCTACTTTCTACCT+TGG 0.411598 3.1:+56198509 None:intergenic
TGCCAAATACAAGGACCTTT+CGG 0.412730 3.1:-56198988 MS.gene63471:CDS
GGAGAAACTGTTACCATTGT+TGG 0.413207 3.1:-56203109 MS.gene63471:CDS
TGCGAGAAAGGCAGCAATAA+GGG 0.413882 3.1:-56200048 MS.gene63471:CDS
TATCACAAACACTTCGTTGT+TGG 0.429773 3.1:+56201326 None:intergenic
TGCTGCCTTTGATCGTGGTA+AGG 0.430300 3.1:-56198826 MS.gene63471:CDS
CCCTGGCATCATTGAACGCC+TGG 0.431968 3.1:-56198253 MS.gene63471:CDS
TGAGGAAGAGATTGCGAGAA+AGG 0.434305 3.1:-56200060 MS.gene63471:CDS
CGAACGCGTGGCGCCTCAGC+AGG 0.435514 3.1:+56198486 None:intergenic
AACGCCTGGAAGCTGGAATT+CGG 0.436950 3.1:-56198239 MS.gene63471:CDS
TCATCCGAATTCCAGCTTCC+AGG 0.437442 3.1:+56198235 None:intergenic
CCACGCCATGCATCCATAAC+CGG 0.439157 3.1:+56198168 None:intergenic
TACTTTGATTGTACTCGCTC+TGG 0.441154 3.1:-56203061 MS.gene63471:CDS
GATCAAAGGCAGCAGTTGTC+AGG 0.443054 3.1:+56198835 None:intergenic
ACTATTTCCATTTCCATTCG+TGG 0.445874 3.1:+56198920 None:intergenic
AAAGTATTAGTACCTATAGA+TGG 0.446199 3.1:+56201668 None:intergenic
ACTTATGGAGTTCCATCTAT+AGG 0.448061 3.1:-56201680 MS.gene63471:intron
GGAACTGAAGCGATTGTAAT+CGG 0.451537 3.1:+56203533 None:intergenic
TTGGTGCCAAAGATGAAGAT+TGG 0.451676 3.1:-56198791 MS.gene63471:CDS
CGCGTGGCGCCTCAGCAGGT+TGG 0.453077 3.1:+56198490 None:intergenic
ATCATTGAACGCCTGGAAGC+TGG 0.453300 3.1:-56198246 MS.gene63471:CDS
TCTGCCGTCAGCATGTCATC+CGG 0.453326 3.1:+56199738 None:intergenic
TTCTCATTAGACGCAGCGTC+AGG 0.453339 3.1:+56199780 None:intergenic
TCTGCTTATGCATCAGCCCC+TGG 0.455002 3.1:-56198141 MS.gene63471:CDS
TGCATACACATTCTGTGATC+AGG 0.456220 3.1:+56201747 None:intergenic
TTGGACTGAACAAAATTTCA+GGG 0.458568 3.1:+56198409 None:intergenic
CGTAAACGACTCAAAACAAA+TGG 0.459916 3.1:-56198951 MS.gene63471:CDS
AATGAGAAGGTTATCATGTA+AGG 0.466365 3.1:-56198337 MS.gene63471:CDS
AAACTGGATTGGAGTTGATC+AGG 0.466958 3.1:-56198388 MS.gene63471:CDS
AGCTTGCCCGCATCTCTTCA+AGG 0.467261 3.1:-56198701 MS.gene63471:CDS
GGAAATGGAAATAGTTTGAC+AGG 0.467693 3.1:-56198912 MS.gene63471:CDS
GGCTAGATTTACATGGGAAA+AGG 0.468160 3.1:-56200309 MS.gene63471:CDS
TGACATGCTGACGGCAGAGC+AGG 0.469962 3.1:-56199733 MS.gene63471:intron
TCTACCTTGGGCACAAATGT+TGG 0.469972 3.1:+56198522 None:intergenic
GGAGAACCCAGAGCTTTACT+TGG 0.470796 3.1:-56199021 MS.gene63471:CDS
CCGCATCTCTTCAAGGCTCC+AGG 0.473430 3.1:-56198694 MS.gene63471:intron
CAAAATGTGGCAGCTCCATT+GGG 0.477487 3.1:-56200111 MS.gene63471:CDS
GAGACTCAGTGCTGCTCAAA+GGG 0.484024 3.1:-56198871 MS.gene63471:CDS
GATGGTCTTGCTATGTGTCC+TGG 0.485729 3.1:-56201301 MS.gene63471:CDS
TCAAAGTACTTCAACAATGC+TGG 0.488489 3.1:+56203076 None:intergenic
TCCAGGCGTTCAATGATGCC+AGG 0.491307 3.1:+56198252 None:intergenic
TTGTTCAGTCCAAACTGGAT+TGG 0.495233 3.1:-56198399 MS.gene63471:CDS
ATCATGTAAGGATGAAAAGC+TGG 0.497771 3.1:-56198325 MS.gene63471:CDS
ATAGCCAGTCTCTGCTAAGA+AGG 0.501279 3.1:+56199890 None:intergenic
AATAGTTAGAGCACTTGATC+CGG 0.502102 3.1:-56198187 MS.gene63471:CDS
GGTAAGGGCGAGGATACATT+TGG 0.505021 3.1:-56198810 MS.gene63471:CDS
ACATGGGTTGTAGCGAATCC+AGG 0.505173 3.1:+56201283 None:intergenic
TGGGGTTAGATGAGATGGCC+GGG 0.510141 3.1:-56198365 MS.gene63471:CDS
TTTCACACTCACATATGATA+AGG 0.513121 3.1:+56200409 None:intergenic
CGATCCTTCTTAGCAGAGAC+TGG 0.517740 3.1:-56199894 MS.gene63471:CDS
CTCGCAATCTCTTCCTCAGA+AGG 0.518831 3.1:+56200065 None:intergenic
AATACAGGGCTAGATTTACA+TGG 0.523587 3.1:-56200316 MS.gene63471:intron
ACTTCAACAATGCTGGATCA+TGG 0.526588 3.1:+56203083 None:intergenic
GATTGTAATCGGATTGGCGT+TGG 0.527135 3.1:+56203544 None:intergenic
TCAATTAAATCTATGTCCGA+TGG 0.528487 3.1:-56199469 MS.gene63471:CDS
CTGCCGTCAGCATGTCATCC+GGG 0.530851 3.1:+56199739 None:intergenic
CAGAGACTGGCTATGTCTCT+AGG 0.531810 3.1:-56199881 MS.gene63471:CDS
TTGGGTGCCACCTCCAGTTG+AGG 0.532459 3.1:-56200093 MS.gene63471:CDS
CACACAAACATTCACTAGGA+TGG 0.534118 3.1:-56198112 MS.gene63471:CDS
CTCGCCCTTACCACGATCAA+AGG 0.535951 3.1:+56198821 None:intergenic
GACTGGCTATGTCTCTAGGC+AGG 0.538143 3.1:-56199877 MS.gene63471:CDS
AGGACTGCACAACTTTACTA+CGG 0.540370 3.1:+56199841 None:intergenic
AATGTTTGTGTGTGGAAACC+AGG 0.541962 3.1:+56198123 None:intergenic
CAACTGGAGGTGGCACCCAA+TGG 0.542988 3.1:+56200096 None:intergenic
GGAGGCTCCTCAACTGGAGG+TGG 0.543167 3.1:+56200086 None:intergenic
AGCTGTCGCACTAATATTGG+TGG 0.543175 3.1:-56200478 MS.gene63471:CDS
ACAATTGCGTGCCAAATACA+AGG 0.543355 3.1:-56198997 MS.gene63471:CDS
AGAGACTCAGTGCTGCTCAA+AGG 0.543891 3.1:-56198872 MS.gene63471:CDS
AATGGAGGCTCCTCCACGAA+TGG 0.545578 3.1:-56198933 MS.gene63471:CDS
CTGGAGCCTTGAAGAGATGC+GGG 0.545647 3.1:+56198695 None:intergenic
AAAGGTTGAAGACCTGAAGA+TGG 0.546155 3.1:-56200291 MS.gene63471:CDS
GTGGGGTTAGATGAGATGGC+CGG 0.546632 3.1:-56198366 MS.gene63471:CDS
GGAACATTGTTATGTTGCAC+AGG 0.549607 3.1:-56200270 MS.gene63471:CDS
CGAAGTGTTTGTGATAAAGA+TGG 0.552869 3.1:-56201319 MS.gene63471:CDS
GGATCCAACATTTGTGCCCA+AGG 0.558370 3.1:-56198526 MS.gene63471:CDS
GCTGCCTTTGATCGTGGTAA+GGG 0.560441 3.1:-56198825 MS.gene63471:CDS
TCAGGTGGGGTTAGATGAGA+TGG 0.560508 3.1:-56198370 MS.gene63471:CDS
ACACATTCTGTGATCAGGAT+AGG 0.562462 3.1:+56201752 None:intergenic
TTGATCCGGTTATGGATGCA+TGG 0.569262 3.1:-56198173 MS.gene63471:CDS
AAGAGGAATTGGAAAGGGAA+AGG 0.571587 3.1:-56199417 MS.gene63471:CDS
TGAAGCGATTGTAATCGGAT+TGG 0.582038 3.1:+56203538 None:intergenic
AAAACAGAAGCGCTATGAAG+AGG 0.582251 3.1:-56199434 MS.gene63471:CDS
ATTGTTCCAAGTAAAGCTCT+GGG 0.582286 3.1:+56199015 None:intergenic
AGTTGAGGAGCCTCCTTCTG+AGG 0.582751 3.1:-56200078 MS.gene63471:CDS
CAATTAAATCTATGTCCGAT+GGG 0.583416 3.1:-56199468 MS.gene63471:CDS
GAATGGGTGCAACAGGATCA+GGG 0.585195 3.1:-56202320 MS.gene63471:CDS
CTTTGATCGTGGTAAGGGCG+AGG 0.585724 3.1:-56198820 MS.gene63471:CDS
ACTAATTCCATACTTGTGAC+TGG 0.586278 3.1:-56198291 MS.gene63471:CDS
CTATGAAGAGGAATTGGAAA+GGG 0.588782 3.1:-56199422 MS.gene63471:CDS
TGGATTGGAGTTGATCAGGT+GGG 0.593502 3.1:-56198384 MS.gene63471:CDS
GTCGATAACGATGGGAGTGG+TGG 0.594078 3.1:+56203512 None:intergenic
GTTTGAGAGAGTACCCAATA+CGG 0.594884 3.1:+56203472 None:intergenic
AAGTAGCTCCCAACCTGCTG+AGG 0.596677 3.1:-56198499 MS.gene63471:CDS
GGTCTGGCAGAAAGGAGCTA+AGG 0.597955 3.1:-56200150 MS.gene63471:intron
TGAAAATCTTCTTTGGTGAG+CGG 0.599646 3.1:+56198462 None:intergenic
GCGCCATTGTCGATAACGAT+GGG 0.599979 3.1:+56203504 None:intergenic
TAAGGGAGAAACAAGGTCAA+AGG 0.600031 3.1:-56200031 MS.gene63471:CDS
GAATGCTGCGTCAACACCAA+AGG 0.600730 3.1:+56201363 None:intergenic
GGACTGCACAACTTTACTAC+GGG 0.602389 3.1:+56199842 None:intergenic
GGATTGGAGTTGATCAGGTG+GGG 0.603330 3.1:-56198383 MS.gene63471:CDS
TGGATCATGGTCACCAACAA+TGG 0.605508 3.1:+56203096 None:intergenic
AATAGTTTGACAGGTAGTGT+TGG 0.609953 3.1:-56198903 MS.gene63471:CDS
AATAGCATACCGGAATCACA+TGG 0.614786 3.1:+56201266 None:intergenic
TTGGTGAGCGGACGAACGCG+TGG 0.616384 3.1:+56198474 None:intergenic
CGGCCGCGACATAAAGCCAC+AGG 0.616729 3.1:-56203298 MS.gene63471:intron
ACAACTGCTGCCTTTGATCG+TGG 0.621156 3.1:-56198831 MS.gene63471:CDS
TGGCCGGGGTCTCAATGAGA+AGG 0.621786 3.1:-56198350 MS.gene63471:CDS
CCTGGAGCCTTGAAGAGATG+CGG 0.621822 3.1:+56198694 None:intergenic
CTGGATTGGAGTTGATCAGG+TGG 0.622971 3.1:-56198385 MS.gene63471:CDS
TTGACAGGTAGTGTTGGTCG+TGG 0.623337 3.1:-56198897 MS.gene63471:CDS
ATTGTCGATAACGATGGGAG+TGG 0.624254 3.1:+56203509 None:intergenic
AAGGAAACAACAGCTAGAAG+AGG 0.625342 3.1:-56199398 MS.gene63471:CDS
CTGGCAGAAAGGAGCTAAGG+AGG 0.626277 3.1:-56200147 MS.gene63471:intron
AATTCCATACTTGTGACTGG+TGG 0.627990 3.1:-56198288 MS.gene63471:CDS
AGCGCCATTGTCGATAACGA+TGG 0.629390 3.1:+56203503 None:intergenic
CCAGGCGTTCAATGATGCCA+GGG 0.631341 3.1:+56198253 None:intergenic
TCCACACACAAACATTCACT+AGG 0.632292 3.1:-56198116 MS.gene63471:CDS
TAACCTTCTCATTGAGACCC+CGG 0.634694 3.1:+56198347 None:intergenic
CAAAGGCAGCAGTTGTCAGG+AGG 0.634784 3.1:+56198838 None:intergenic
GCAATCTCTTCCTCAGAAGG+AGG 0.635472 3.1:+56200068 None:intergenic
TCCTAGTGAATGTTTGTGTG+TGG 0.637957 3.1:+56198115 None:intergenic
ACTCCCATCGTTATCGACAA+TGG 0.639040 3.1:-56203507 MS.gene63471:CDS
ATACCTGTGGCTTTATGTCG+CGG 0.641067 3.1:+56203295 None:intergenic
TCGCTTTCGAATGCTGATCG+TGG 0.643501 3.1:+56203037 None:intergenic
GAAGGAGGCTCCTCAACTGG+AGG 0.645561 3.1:+56200083 None:intergenic
GAGAAATGGCTGAGGCGAAG+AGG 0.646132 3.1:-56200004 MS.gene63471:CDS
ATGTTTGTGTGTGGAAACCA+GGG 0.651346 3.1:+56198124 None:intergenic
AAGGTTGCGAGAAATGGCTG+AGG 0.651418 3.1:-56200012 MS.gene63471:CDS
GTAAAGTTGTGCAGTCCTTG+CGG 0.652419 3.1:-56199836 MS.gene63471:CDS
AAACGACTCAAAACAAATGG+AGG 0.653455 3.1:-56198948 MS.gene63471:CDS
AATGGGTGCAACAGGATCAG+GGG 0.654606 3.1:-56202319 MS.gene63471:intron
ATACAGGGCTAGATTTACAT+GGG 0.656838 3.1:-56200315 MS.gene63471:intron
ATTTCCATTTCCATTCGTGG+AGG 0.662358 3.1:+56198923 None:intergenic
GCTATGAAGAGGAATTGGAA+AGG 0.664977 3.1:-56199423 MS.gene63471:CDS
CCGGTTATGGATGCATGGCG+TGG 0.666067 3.1:-56198168 MS.gene63471:CDS
CGATGACGATGAACCAGATG+AGG 0.674955 3.1:-56198733 MS.gene63471:CDS
GGGGTTAGATGAGATGGCCG+GGG 0.683662 3.1:-56198364 MS.gene63471:CDS
TTAAATCTATGTCCGATGGG+AGG 0.689589 3.1:-56199465 MS.gene63471:CDS
GTATACGCTTATAAACATCC+CGG 0.690841 3.1:-56199757 MS.gene63471:CDS
CATCCCGGATGACATGCTGA+CGG 0.695168 3.1:-56199742 MS.gene63471:CDS
GCAGCAATAAGGGAGAAACA+AGG 0.705579 3.1:-56200038 MS.gene63471:CDS
ATAGCATACCGGAATCACAT+GGG 0.715502 3.1:+56201267 None:intergenic
GAGCTGGAAAATGAATTACG+TGG 0.728785 3.1:-56199966 MS.gene63471:CDS
ATTCGGATGATTAGACCCTG+CGG 0.743477 3.1:-56198222 MS.gene63471:CDS
TGTTTGTGTGTGGAAACCAG+GGG 0.796872 3.1:+56198125 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAAATTTTTAAATAAAT+AGG - chr3.1:56200952-56200971 MS.gene63471:intron 0.0%
!!! TTTTATCTTTTTATAGAAAT+AGG + chr3.1:56199496-56199515 None:intergenic 10.0%
!! AATATGAATAATTTCTAACT+AGG - chr3.1:56198857-56198876 MS.gene63471:CDS 15.0%
!! ATATGAATAATTTCTAACTA+GGG - chr3.1:56198858-56198877 MS.gene63471:CDS 15.0%
!!! AATTTTGAATATTTTCATCA+TGG - chr3.1:56198199-56198218 MS.gene63471:CDS 15.0%
!!! ATTTTGAATATTTTCATCAT+GGG - chr3.1:56198200-56198219 MS.gene63471:CDS 15.0%
!!! CAATTTTCTAAGAAATTATT+TGG + chr3.1:56202050-56202069 None:intergenic 15.0%
!!! CTTTTTTTTTTTTTTTTGCT+TGG - chr3.1:56201997-56202016 MS.gene63471:intron 15.0%
!! AACATTGTTAAAAAAACTGT+AGG - chr3.1:56200881-56200900 MS.gene63471:intron 20.0%
!! ACATTGTTAAAAAAACTGTA+GGG - chr3.1:56200882-56200901 MS.gene63471:intron 20.0%
!! ATAAAAAAACACTTTACTCA+TGG + chr3.1:56199329-56199348 None:intergenic 20.0%
!! ATATATGTTAATGTCATACA+AGG + chr3.1:56199031-56199050 None:intergenic 20.0%
!! CTTATTAAATTCTCAATACA+GGG - chr3.1:56201287-56201306 MS.gene63471:CDS 20.0%
!! TAAGAAATAGTACGTATTTA+GGG + chr3.1:56201264-56201283 None:intergenic 20.0%
!! TATTACATATTATGGGAATA+TGG - chr3.1:56199162-56199181 MS.gene63471:intron 20.0%
!! TATTCCCATAATATGTAATA+TGG + chr3.1:56199162-56199181 None:intergenic 20.0%
!! TCTTATTAAATTCTCAATAC+AGG - chr3.1:56201286-56201305 MS.gene63471:CDS 20.0%
!! TGTACCATATTACATATTAT+GGG - chr3.1:56199155-56199174 MS.gene63471:intron 20.0%
!! TTATTAACACTTTACACATT+TGG + chr3.1:56201043-56201062 None:intergenic 20.0%
!!! TTATATTTTCAGTTTGTTGA+CGG - chr3.1:56201097-56201116 MS.gene63471:intron 20.0%
!!! TTGCTTTATTAAGGATTTTA+TGG - chr3.1:56200373-56200392 MS.gene63471:intron 20.0%
!!! TTTTTGGTGAATTTTTAGAT+GGG - chr3.1:56198252-56198271 MS.gene63471:CDS 20.0%
! AAAAAATCCTGTTGATATGT+TGG - chr3.1:56203055-56203074 MS.gene63471:CDS 25.0%
! AAACTATCAGAGTAACTATT+AGG - chr3.1:56200656-56200675 MS.gene63471:intron 25.0%
! AACAATCTGAAAATCTTCTT+TGG + chr3.1:56203165-56203184 None:intergenic 25.0%
! AACATGTATTTACAAAACCA+AGG + chr3.1:56199762-56199781 None:intergenic 25.0%
! AAGAAATAGTACGTATTTAG+GGG + chr3.1:56201263-56201282 None:intergenic 25.0%
! ATGATATAAGCTGCAAATTA+TGG + chr3.1:56199441-56199460 None:intergenic 25.0%
! ATTAAGACTATAAGCACAAA+TGG + chr3.1:56202025-56202044 None:intergenic 25.0%
! ATTATGAAAAAGGTGAAGAT+TGG - chr3.1:56203531-56203550 MS.gene63471:CDS 25.0%
! CAAACATAAGGTTAATTGTT+GGG - chr3.1:56198442-56198461 MS.gene63471:CDS 25.0%
! CATCTAAAAATTCACCAAAA+AGG + chr3.1:56198253-56198272 None:intergenic 25.0%
! CATTGTTAAAAAAACTGTAG+GGG - chr3.1:56200883-56200902 MS.gene63471:intron 25.0%
! CTAAAACTAACACACAAAAA+TGG - chr3.1:56198939-56198958 MS.gene63471:CDS 25.0%
! GAAATTATTCATATTGCTTG+TGG + chr3.1:56198852-56198871 None:intergenic 25.0%
! GAACTTATGAAAACAACTTA+TGG + chr3.1:56199612-56199631 None:intergenic 25.0%
! GTAAGAAATAGTACGTATTT+AGG + chr3.1:56201265-56201284 None:intergenic 25.0%
! GTGTACCATATTACATATTA+TGG - chr3.1:56199154-56199173 MS.gene63471:intron 25.0%
! TAATAAAGCAAATAGCATAC+CGG + chr3.1:56200364-56200383 None:intergenic 25.0%
! TAATATTAAACTCCAATGGT+AGG - chr3.1:56199398-56199417 MS.gene63471:CDS 25.0%
! TAATTTCTAACTAGGGAAAT+AGG - chr3.1:56198865-56198884 MS.gene63471:CDS 25.0%
! TACTTGTTCATACTACAAAA+AGG + chr3.1:56198992-56199011 None:intergenic 25.0%
! TATACTCACATAATTGTAAC+AGG + chr3.1:56198646-56198665 None:intergenic 25.0%
! TCAGTAATATTAAACTCCAA+TGG - chr3.1:56199394-56199413 MS.gene63471:CDS 25.0%
! TCTTAGAAAATTGTTTACTG+TGG - chr3.1:56202057-56202076 MS.gene63471:intron 25.0%
! TGCATTTGTGTGAAAAAATA+TGG - chr3.1:56198740-56198759 MS.gene63471:CDS 25.0%
! TGTTACAATTATGTGAGTAT+AGG - chr3.1:56198645-56198664 MS.gene63471:intron 25.0%
! TTCTATCATAAGCCATATTT+CGG + chr3.1:56200708-56200727 None:intergenic 25.0%
! TTTGTAGTATGAACAAGTAA+TGG - chr3.1:56198993-56199012 MS.gene63471:CDS 25.0%
!! AAAGTATTAGTACCTATAGA+TGG + chr3.1:56199952-56199971 None:intergenic 25.0%
!! ATAGGATGAATCATTTTCAA+TGG - chr3.1:56200970-56200989 MS.gene63471:intron 25.0%
!! CATTAATGTACAGTGTTTTA+AGG - chr3.1:56199186-56199205 MS.gene63471:intron 25.0%
!! GAAGATTTTCAGATTGTTTT+CGG - chr3.1:56203167-56203186 MS.gene63471:intron 25.0%
!! GAATTTCTTTTGAATCAACT+TGG - chr3.1:56201678-56201697 MS.gene63471:intron 25.0%
!! GCATTGTACATGTAATTTTA+TGG - chr3.1:56200199-56200218 MS.gene63471:intron 25.0%
!! GTATGCTATTTGCTTTATTA+AGG - chr3.1:56200364-56200383 MS.gene63471:intron 25.0%
!! TGTTGATATCTGTTTAAGTT+AGG - chr3.1:56200177-56200196 MS.gene63471:intron 25.0%
!!! AATACTTTTTAACCCTACAA+TGG - chr3.1:56199964-56199983 MS.gene63471:CDS 25.0%
!!! AGGATGGATTATTATGAAAA+AGG - chr3.1:56203521-56203540 MS.gene63471:CDS 25.0%
!!! AGTGCTCTAACTATTTTTAT+AGG + chr3.1:56203425-56203444 None:intergenic 25.0%
!!! CATTTTTGTGTGTTAGTTTT+AGG + chr3.1:56198941-56198960 None:intergenic 25.0%
!!! CTTTTTGGTGAATTTTTAGA+TGG - chr3.1:56198251-56198270 MS.gene63471:CDS 25.0%
!!! TATATTTTCAGTTTGTTGAC+GGG - chr3.1:56201098-56201117 MS.gene63471:intron 25.0%
!!! TGCTTTAAAATGTTTCTGAT+TGG - chr3.1:56202549-56202568 MS.gene63471:intron 25.0%
!!! TGTTGTTGTTGCTTTATTTA+AGG - chr3.1:56200788-56200807 MS.gene63471:intron 25.0%
!!! TGTTTTTCAGTTTGAGATAA+TGG - chr3.1:56198606-56198625 MS.gene63471:intron 25.0%
AACAGTAGAAAAACTTAGAC+GGG + chr3.1:56201423-56201442 None:intergenic 30.0%
AAGACTTATACGCCATTTAA+TGG - chr3.1:56201446-56201465 MS.gene63471:intron 30.0%
AAGCTACAAGCATATTTGAA+GGG + chr3.1:56201977-56201996 None:intergenic 30.0%
AAGCTTACTAAGTTCCTTAA+TGG - chr3.1:56202417-56202436 MS.gene63471:intron 30.0%
AATGAGAAGGTTATCATGTA+AGG - chr3.1:56203280-56203299 MS.gene63471:intron 30.0%
AGAAAACTGGCTAAATCTTT+AGG - chr3.1:56202445-56202464 MS.gene63471:intron 30.0%
AGAGTTGGAAATTAATGAGT+TGG - chr3.1:56200681-56200700 MS.gene63471:intron 30.0%
AGCTTACTAAGTTCCTTAAT+GGG - chr3.1:56202418-56202437 MS.gene63471:intron 30.0%
AGCTTGAATAAATTGAAGCA+TGG + chr3.1:56202262-56202281 None:intergenic 30.0%
AGGTTCATAACAACTAGTTA+GGG - chr3.1:56199129-56199148 MS.gene63471:intron 30.0%
AGTAACTATTAGGAAAGAGT+TGG - chr3.1:56200666-56200685 MS.gene63471:intron 30.0%
AGTTCAATCTCGAAGTAAAA+TGG - chr3.1:56199897-56199916 MS.gene63471:CDS 30.0%
ATAGGTCACTACATCAAAAT+AGG + chr3.1:56198691-56198710 None:intergenic 30.0%
ATTATGGTGTTTATCCAAAC+AGG + chr3.1:56199425-56199444 None:intergenic 30.0%
CAAAGTTGACAATGTTTGTT+GGG - chr3.1:56202084-56202103 MS.gene63471:intron 30.0%
CAATTAAATCTATGTCCGAT+GGG - chr3.1:56202149-56202168 MS.gene63471:intron 30.0%
CATAAGTTCAAACCTATCTA+TGG + chr3.1:56198786-56198805 None:intergenic 30.0%
CTCCTTATTACAGAATCTAT+AGG + chr3.1:56200595-56200614 None:intergenic 30.0%
CTTTGGACATTCTTAACATA+GGG - chr3.1:56202575-56202594 MS.gene63471:intron 30.0%
GAACAGTAGAAAAACTTAGA+CGG + chr3.1:56201424-56201443 None:intergenic 30.0%
GAATGTAACCATATGTTCAT+AGG - chr3.1:56199109-56199128 MS.gene63471:intron 30.0%
GACCTATAGATTCTGTAATA+AGG - chr3.1:56200590-56200609 MS.gene63471:intron 30.0%
GCAAACATAAGGTTAATTGT+TGG - chr3.1:56198441-56198460 MS.gene63471:CDS 30.0%
GTCATCAAAAATAAATGAGC+TGG - chr3.1:56201635-56201654 MS.gene63471:intron 30.0%
GTCTATGTTTAGCAAACATA+AGG - chr3.1:56198430-56198449 MS.gene63471:CDS 30.0%
GTTATGAACCTATGAACATA+TGG + chr3.1:56199120-56199139 None:intergenic 30.0%
TACAATTATGTGAGTATAGG+AGG - chr3.1:56198648-56198667 MS.gene63471:intron 30.0%
TAGGTTCATAACAACTAGTT+AGG - chr3.1:56199128-56199147 MS.gene63471:intron 30.0%
TCAATTAAATCTATGTCCGA+TGG - chr3.1:56202148-56202167 MS.gene63471:intron 30.0%
TCTTGTGACATAGTTATTAC+TGG - chr3.1:56200133-56200152 MS.gene63471:CDS 30.0%
TCTTTGGACATTCTTAACAT+AGG - chr3.1:56202574-56202593 MS.gene63471:intron 30.0%
TGAATTGAAGTGAGACAATA+AGG - chr3.1:56199054-56199073 MS.gene63471:intron 30.0%
TGGCTTATGATAGAACATTA+TGG - chr3.1:56200713-56200732 MS.gene63471:intron 30.0%
TTAAATGGCGTATAAGTCTT+AGG + chr3.1:56201446-56201465 None:intergenic 30.0%
TTGGACTGAACAAAATTTCA+GGG + chr3.1:56203211-56203230 None:intergenic 30.0%
TTTAACAATGTTTGTCTGTG+AGG + chr3.1:56200873-56200892 None:intergenic 30.0%
TTTCACACTCACATATGATA+AGG + chr3.1:56201211-56201230 None:intergenic 30.0%
TTTGGACTGAACAAAATTTC+AGG + chr3.1:56203212-56203231 None:intergenic 30.0%
! AAATTTTGTTCAGTCCAAAC+TGG - chr3.1:56203213-56203232 MS.gene63471:intron 30.0%
! ATTTTACTTCGAGATTGAAC+TGG + chr3.1:56199898-56199917 None:intergenic 30.0%
! ATTTTATGGTAAAGACGAGA+TGG - chr3.1:56200387-56200406 MS.gene63471:intron 30.0%
! TGACATAGTTATTACTGGTT+TGG - chr3.1:56200138-56200157 MS.gene63471:CDS 30.0%
! TTTTACTTCGAGATTGAACT+GGG + chr3.1:56199897-56199916 None:intergenic 30.0%
! TTTTATGGTAAAGACGAGAT+GGG - chr3.1:56200388-56200407 MS.gene63471:intron 30.0%
! TTTTCATTTACGAATAGACC+TGG + chr3.1:56200074-56200093 None:intergenic 30.0%
! TTTTTAACATTGTGTGACAC+AGG - chr3.1:56198487-56198506 MS.gene63471:CDS 30.0%
! TTTTTCGCAACATTGTTCAA+CGG - chr3.1:56198299-56198318 MS.gene63471:CDS 30.0%
!! ATGTTTCTGATTGGTTTCTT+TGG - chr3.1:56202558-56202577 MS.gene63471:intron 30.0%
!! CTTCAAAGTTTGTTCCTTTT+TGG - chr3.1:56198236-56198255 MS.gene63471:CDS 30.0%
!! GATTGTTTCTGGTAAGAAAT+AGG - chr3.1:56201388-56201407 MS.gene63471:intron 30.0%
!! TTTGATAGCTTGTTGAAAAG+AGG - chr3.1:56202116-56202135 MS.gene63471:intron 30.0%
!!! ATATTTTCAGTTTGTTGACG+GGG - chr3.1:56201099-56201118 MS.gene63471:intron 30.0%
!!! CACGTTTTGAAGTGAAATTA+GGG + chr3.1:56198170-56198189 None:intergenic 30.0%
!!! CCACATTTTGGTTTTTTCTT+CGG + chr3.1:56201496-56201515 None:intergenic 30.0%
!!! GAACTTCTTTTTGAGACTTA+TGG - chr3.1:56199922-56199941 MS.gene63471:CDS 30.0%
AAACGACTCAAAACAAATGG+AGG - chr3.1:56202669-56202688 MS.gene63471:intron 35.0%
AAGGCTCTTGTAAAAGATCA+AGG + chr3.1:56199996-56200015 None:intergenic 35.0%
AAGTTGCCAATCTTCATCTT+TGG + chr3.1:56202835-56202854 None:intergenic 35.0%
AATAAGGAGAGTAGATCAGA+TGG - chr3.1:56200606-56200625 MS.gene63471:intron 35.0%
AATACAGGGCTAGATTTACA+TGG - chr3.1:56201301-56201320 MS.gene63471:CDS 35.0%
AATAGTTTGACAGGTAGTGT+TGG - chr3.1:56202714-56202733 MS.gene63471:intron 35.0%
AATTGAAGCATGGAACATAC+AGG + chr3.1:56202252-56202271 None:intergenic 35.0%
AATTGTTCCAAGTAAAGCTC+TGG + chr3.1:56202606-56202625 None:intergenic 35.0%
ACAGTAGAAAAACTTAGACG+GGG + chr3.1:56201422-56201441 None:intergenic 35.0%
ACCTATAGTTGAAAAGATGG+TGG - chr3.1:56200498-56200517 MS.gene63471:CDS 35.0%
ACTAATTCCATACTTGTGAC+TGG - chr3.1:56203326-56203345 MS.gene63471:CDS 35.0%
ACTATTTCCATTTCCATTCG+TGG + chr3.1:56202700-56202719 None:intergenic 35.0%
ACTTATGGAGTTCCATCTAT+AGG - chr3.1:56199937-56199956 MS.gene63471:CDS 35.0%
AGCACCTATAGTTGAAAAGA+TGG - chr3.1:56200495-56200514 MS.gene63471:CDS 35.0%
AGGATAGTTGAAAAGATGGT+GGG - chr3.1:56200532-56200551 MS.gene63471:intron 35.0%
ATACAGGGCTAGATTTACAT+GGG - chr3.1:56201302-56201321 MS.gene63471:CDS 35.0%
ATCATGTAAGGATGAAAAGC+TGG - chr3.1:56203292-56203311 MS.gene63471:intron 35.0%
ATGTCACAAGATGTCAAACA+TGG + chr3.1:56200124-56200143 None:intergenic 35.0%
ATTGTTCCAAGTAAAGCTCT+GGG + chr3.1:56202605-56202624 None:intergenic 35.0%
CATAACAATGTTCCATCTTC+AGG + chr3.1:56201341-56201360 None:intergenic 35.0%
CATGAGAGTTCTTTGATACA+AGG + chr3.1:56203032-56203051 None:intergenic 35.0%
CCGAAGAAAAAACCAAAATG+TGG - chr3.1:56201493-56201512 MS.gene63471:intron 35.0%
CCTAATTTCACTTCAAAACG+TGG - chr3.1:56198168-56198187 MS.gene63471:CDS 35.0%
CCTATAGTTGAAAAGATGGT+GGG - chr3.1:56200499-56200518 MS.gene63471:CDS 35.0%
CGACAGCTTCCTTTATAAAT+TGG + chr3.1:56201127-56201146 None:intergenic 35.0%
CGTAAACGACTCAAAACAAA+TGG - chr3.1:56202666-56202685 MS.gene63471:intron 35.0%
CTATGAAGAGGAATTGGAAA+GGG - chr3.1:56202195-56202214 MS.gene63471:intron 35.0%
CTTACTAAGTTCCTTAATGG+GGG - chr3.1:56202420-56202439 MS.gene63471:intron 35.0%
GAAGCTACAAGCATATTTGA+AGG + chr3.1:56201978-56201997 None:intergenic 35.0%
GATCAACAACTAAACAACAC+AGG + chr3.1:56198814-56198833 None:intergenic 35.0%
GATGAAGAAAAAGATACCTG+TGG + chr3.1:56198338-56198357 None:intergenic 35.0%
GATGTTCTCATAAGCTATCT+TGG - chr3.1:56199547-56199566 MS.gene63471:intron 35.0%
GCAAAGTTGACAATGTTTGT+TGG - chr3.1:56202083-56202102 MS.gene63471:intron 35.0%
GCTTACTAAGTTCCTTAATG+GGG - chr3.1:56202419-56202438 MS.gene63471:intron 35.0%
GCTTAGGATAGTTGAAAAGA+TGG - chr3.1:56200528-56200547 MS.gene63471:intron 35.0%
GGAAAATGAATTACGTGGTT+TGG - chr3.1:56201656-56201675 MS.gene63471:intron 35.0%
GGAAATGGAAATAGTTTGAC+AGG - chr3.1:56202705-56202724 MS.gene63471:intron 35.0%
GGTATTCAGCTTAGTGAAAT+GGG - chr3.1:56202324-56202343 MS.gene63471:CDS 35.0%
GTATACGCTTATAAACATCC+CGG - chr3.1:56201860-56201879 MS.gene63471:intron 35.0%
TAACACTTTACACATTTGGC+AGG + chr3.1:56201039-56201058 None:intergenic 35.0%
TACCAAACCAACATATCAAC+AGG + chr3.1:56203065-56203084 None:intergenic 35.0%
TAGGATAGTTGAAAAGATGG+TGG - chr3.1:56200531-56200550 MS.gene63471:intron 35.0%
TATCACAAACACTTCGTTGT+TGG + chr3.1:56200294-56200313 None:intergenic 35.0%
TCAAATAAGTCCATCCAAAC+AGG - chr3.1:56199671-56199690 MS.gene63471:intron 35.0%
TGAAAATCTTCTTTGGTGAG+CGG + chr3.1:56203158-56203177 None:intergenic 35.0%
TGAAGTGAGACAATAAGGTT+TGG - chr3.1:56199059-56199078 MS.gene63471:intron 35.0%
TGGTATTCAGCTTAGTGAAA+TGG - chr3.1:56202323-56202342 MS.gene63471:CDS 35.0%
TTATACGCCATTTAATGGTC+TGG - chr3.1:56201451-56201470 MS.gene63471:intron 35.0%
TTCATAACAACTAGTTAGGG+AGG - chr3.1:56199132-56199151 MS.gene63471:intron 35.0%
! AATAGTTAGAGCACTTGATC+CGG - chr3.1:56203430-56203449 MS.gene63471:intron 35.0%
! AGATTGTTTTCGGAGTTGAA+AGG - chr3.1:56203177-56203196 MS.gene63471:intron 35.0%
! AGGTCGAGTCTTTTATAATG+TGG - chr3.1:56202948-56202967 MS.gene63471:intron 35.0%
! ATCCTGTTGATATGTTGGTT+TGG - chr3.1:56203060-56203079 MS.gene63471:CDS 35.0%
! CGAAGTGTTTGTGATAAAGA+TGG - chr3.1:56200298-56200317 MS.gene63471:CDS 35.0%
! GTTGTTTCATCTTCAGATTC+TGG - chr3.1:56199259-56199278 MS.gene63471:intron 35.0%
! TAATGAGTTGGACCGAAATA+TGG - chr3.1:56200693-56200712 MS.gene63471:intron 35.0%
! TCAAAGTACTTCAACAATGC+TGG + chr3.1:56198544-56198563 None:intergenic 35.0%
! TTTTCGGAGTTGAAAGGTTT+AGG - chr3.1:56203183-56203202 MS.gene63471:intron 35.0%
!! GACTTTGCTTTTGATCGAAT+GGG - chr3.1:56199281-56199300 MS.gene63471:intron 35.0%
!! GATGTAGTGACCTATTTTGA+TGG - chr3.1:56198696-56198715 MS.gene63471:CDS 35.0%
!! TGTTGATATGTTGGTTTGGT+AGG - chr3.1:56203064-56203083 MS.gene63471:CDS 35.0%
!!! AACACGGCTAATTTTAGGTT+AGG + chr3.1:56202976-56202995 None:intergenic 35.0%
!!! CCACGTTTTGAAGTGAAATT+AGG + chr3.1:56198171-56198190 None:intergenic 35.0%
!!! TTGTTTTGAGTCGTTTACGT+TGG + chr3.1:56202665-56202684 None:intergenic 35.0%
AAAGGTTGAAGACCTGAAGA+TGG - chr3.1:56201326-56201345 MS.gene63471:CDS 40.0%
AAGAGGAATTGGAAAGGGAA+AGG - chr3.1:56202200-56202219 MS.gene63471:intron 40.0%
AAGGAAACAACAGCTAGAAG+AGG - chr3.1:56202219-56202238 MS.gene63471:intron 40.0%
AATAGCATACCGGAATCACA+TGG + chr3.1:56200354-56200373 None:intergenic 40.0%
AATGTTTGTGTGTGGAAACC+AGG + chr3.1:56203497-56203516 None:intergenic 40.0%
AATTCCATACTTGTGACTGG+TGG - chr3.1:56203329-56203348 MS.gene63471:CDS 40.0%
ACAATTGCGTGCCAAATACA+AGG - chr3.1:56202620-56202639 MS.gene63471:intron 40.0%
ACACATTCTGTGATCAGGAT+AGG + chr3.1:56199868-56199887 None:intergenic 40.0%
ACCAACACATACACACAACA+CGG + chr3.1:56202992-56203011 None:intergenic 40.0%
ACTTCAACAATGCTGGATCA+TGG + chr3.1:56198537-56198556 None:intergenic 40.0%
AGGACTGCACAACTTTACTA+CGG + chr3.1:56201779-56201798 None:intergenic 40.0%
ATAAAAGACTCGACCTAACC+TGG + chr3.1:56202944-56202963 None:intergenic 40.0%
ATAGCATACCGGAATCACAT+GGG + chr3.1:56200353-56200372 None:intergenic 40.0%
ATAGGATGATCAATCTGCTC+TGG + chr3.1:56199850-56199869 None:intergenic 40.0%
ATATTCATGCGAGCAAGAGA+TGG - chr3.1:56202303-56202322 MS.gene63471:intron 40.0%
ATGTTGCGAAAAACAACACG+AGG + chr3.1:56198292-56198311 None:intergenic 40.0%
ATGTTTGTGTGTGGAAACCA+GGG + chr3.1:56203496-56203515 None:intergenic 40.0%
ATTTCCATTTCCATTCGTGG+AGG + chr3.1:56202697-56202716 None:intergenic 40.0%
CACACAAACATTCACTAGGA+TGG - chr3.1:56203505-56203524 MS.gene63471:CDS 40.0%
CATTTAATGGTCTGGCAGAA+AGG - chr3.1:56201459-56201478 MS.gene63471:intron 40.0%
CCTATCTATGGCAACAAAAC+AGG + chr3.1:56198774-56198793 None:intergenic 40.0%
CTTTCTGCCAGACCATTAAA+TGG + chr3.1:56201461-56201480 None:intergenic 40.0%
GACGGGGAACCAATTTATAA+AGG - chr3.1:56201115-56201134 MS.gene63471:intron 40.0%
GAGCTGGAAAATGAATTACG+TGG - chr3.1:56201651-56201670 MS.gene63471:intron 40.0%
GCTATGAAGAGGAATTGGAA+AGG - chr3.1:56202194-56202213 MS.gene63471:intron 40.0%
GGAAATAAGCTTAGGTGGTT+TGG - chr3.1:56200553-56200572 MS.gene63471:intron 40.0%
GGAACATTGTTATGTTGCAC+AGG - chr3.1:56201347-56201366 MS.gene63471:CDS 40.0%
GGAACTGAAGCGATTGTAAT+CGG + chr3.1:56198087-56198106 None:intergenic 40.0%
GGAGAAACTGTTACCATTGT+TGG - chr3.1:56198508-56198527 MS.gene63471:CDS 40.0%
GGCTAGATTTACATGGGAAA+AGG - chr3.1:56201308-56201327 MS.gene63471:CDS 40.0%
TAAGGGAGAAACAAGGTCAA+AGG - chr3.1:56201586-56201605 MS.gene63471:intron 40.0%
TACTTTGATTGTACTCGCTC+TGG - chr3.1:56198556-56198575 MS.gene63471:intron 40.0%
TCATTTACGAATAGACCTGG+TGG + chr3.1:56200071-56200090 None:intergenic 40.0%
TCCACACACAAACATTCACT+AGG - chr3.1:56203501-56203520 MS.gene63471:CDS 40.0%
TCCTAGTGAATGTTTGTGTG+TGG + chr3.1:56203505-56203524 None:intergenic 40.0%
TGAAGCGATTGTAATCGGAT+TGG + chr3.1:56198082-56198101 None:intergenic 40.0%
TGACATGCAGCCATCAAAAT+AGG + chr3.1:56198709-56198728 None:intergenic 40.0%
TGATCAACTCCAATCCAGTT+TGG + chr3.1:56203230-56203249 None:intergenic 40.0%
TGCATACACATTCTGTGATC+AGG + chr3.1:56199873-56199892 None:intergenic 40.0%
TGCCAAATACAAGGACCTTT+CGG - chr3.1:56202629-56202648 MS.gene63471:intron 40.0%
TTAAATCTATGTCCGATGGG+AGG - chr3.1:56202152-56202171 MS.gene63471:intron 40.0%
TTCAGAAGCTCGATTGTTTC+TGG - chr3.1:56201377-56201396 MS.gene63471:intron 40.0%
TTGTTCAGTCCAAACTGGAT+TGG - chr3.1:56203218-56203237 MS.gene63471:intron 40.0%
TTTAGCAGCACACCAAAGTT+GGG + chr3.1:56199698-56199717 None:intergenic 40.0%
TTTGGCACGACACACTTTAA+AGG - chr3.1:56199077-56199096 MS.gene63471:intron 40.0%
! AAACCTTTTCCCACTAAGTG+GGG + chr3.1:56200762-56200781 None:intergenic 40.0%
! AAACTGGATTGGAGTTGATC+AGG - chr3.1:56203229-56203248 MS.gene63471:intron 40.0%
! AGAGTACCCAATACGGAAAT+AGG + chr3.1:56198141-56198160 None:intergenic 40.0%
! AGCTTGGTAATAGCAAAAGC+AGG + chr3.1:56201238-56201257 None:intergenic 40.0%
! ATCAAGGCTTTTGCCATTGT+AGG + chr3.1:56199980-56199999 None:intergenic 40.0%
! ATTGCTTGTGGCGTTCATTT+TGG + chr3.1:56198840-56198859 None:intergenic 40.0%
! ATTTGAAGGGTGTGATGACA+GGG + chr3.1:56201964-56201983 None:intergenic 40.0%
! ATTTTTATAGGCGAACCGCA+GGG + chr3.1:56203413-56203432 None:intergenic 40.0%
! CAAACCTTTTCCCACTAAGT+GGG + chr3.1:56200763-56200782 None:intergenic 40.0%
! CACACAACACGGCTAATTTT+AGG + chr3.1:56202981-56203000 None:intergenic 40.0%
! CCCACCATCTTTTCAACTAT+AGG + chr3.1:56200502-56200521 None:intergenic 40.0%
! GTTGGTCAATTTTCTCCGAA+AGG + chr3.1:56202647-56202666 None:intergenic 40.0%
! GTTGTGTGTATGTGTTGGTA+TGG - chr3.1:56202993-56203012 MS.gene63471:intron 40.0%
! TATTTGAAGGGTGTGATGAC+AGG + chr3.1:56201965-56201984 None:intergenic 40.0%
! TCAAGGCTTTTGCCATTGTA+GGG + chr3.1:56199979-56199998 None:intergenic 40.0%
! TGTTTTGCAGAGTTGCTTGT+AGG - chr3.1:56201003-56201022 MS.gene63471:intron 40.0%
!! AAAACAGAAGCGCTATGAAG+AGG - chr3.1:56202183-56202202 MS.gene63471:intron 40.0%
!! AGATGGTGGGAAATAAGCTT+AGG - chr3.1:56200512-56200531 MS.gene63471:intron 40.0%
!! CCTGTTTTGTTGCCATAGAT+AGG - chr3.1:56198771-56198790 MS.gene63471:CDS 40.0%
!! CGCTTCTGTTTCTACTACTA+AGG + chr3.1:56200015-56200034 None:intergenic 40.0%
!! CGTTGGATTTTGGAGATGAA+AGG + chr3.1:56198059-56198078 None:intergenic 40.0%
!! CTGGCTAAATCTTTAGGACA+AGG - chr3.1:56202451-56202470 MS.gene63471:intron 40.0%
!! GGACTTTGCTTTTGATCGAA+TGG - chr3.1:56199280-56199299 MS.gene63471:intron 40.0%
!! GTTTGAGAGAGTACCCAATA+CGG + chr3.1:56198148-56198167 None:intergenic 40.0%
!! TACGTATTTAGGGGTTAGCT+TGG + chr3.1:56201254-56201273 None:intergenic 40.0%
!! TATGTTGGTTTGGTAGGACT+TGG - chr3.1:56203070-56203089 MS.gene63471:CDS 40.0%
!! TATTTTTATAGGCGAACCGC+AGG + chr3.1:56203414-56203433 None:intergenic 40.0%
!! TGGTGAATTTTTAGATGGGC+TGG - chr3.1:56198256-56198275 MS.gene63471:CDS 40.0%
!! TTGGTGCCAAAGATGAAGAT+TGG - chr3.1:56202826-56202845 MS.gene63471:intron 40.0%
AAGATTGGGCATAAGGCAAC+AGG + chr3.1:56200046-56200065 None:intergenic 45.0%
AATCCCAAGTACATGACGCA+TGG + chr3.1:56198910-56198929 None:intergenic 45.0%
ACTCCCATCGTTATCGACAA+TGG - chr3.1:56198110-56198129 MS.gene63471:CDS 45.0%
AGAGAGAGAGAGAGAGAGTT+GGG - chr3.1:56200470-56200489 MS.gene63471:CDS 45.0%
AGATCAGATGGAGCATAGTC+AGG - chr3.1:56200618-56200637 MS.gene63471:intron 45.0%
AGCTCTGTGTTATCCTCATC+TGG + chr3.1:56202900-56202919 None:intergenic 45.0%
AGCTGTCGCACTAATATTGG+TGG - chr3.1:56201139-56201158 MS.gene63471:intron 45.0%
AGGTCAAAGGTTGCGAGAAA+TGG - chr3.1:56201599-56201618 MS.gene63471:intron 45.0%
ATAGCCAGTCTCTGCTAAGA+AGG + chr3.1:56201730-56201749 None:intergenic 45.0%
ATCCAAACAGGACCTACCAT+TGG + chr3.1:56199413-56199432 None:intergenic 45.0%
ATTCGGATGATTAGACCCTG+CGG - chr3.1:56203395-56203414 MS.gene63471:intron 45.0%
ATTGTCGATAACGATGGGAG+TGG + chr3.1:56198111-56198130 None:intergenic 45.0%
CAAAATGTGGCAGCTCCATT+GGG - chr3.1:56201506-56201525 MS.gene63471:intron 45.0%
CAGTCCTTGCGGAAACAAAA+AGG - chr3.1:56201792-56201811 MS.gene63471:intron 45.0%
CCACTTAGTGGGAAAAGGTT+TGG - chr3.1:56200761-56200780 MS.gene63471:intron 45.0%
CTCCGAAAGGTCCTTGTATT+TGG + chr3.1:56202634-56202653 None:intergenic 45.0%
CTTAATGGGGGAGAGAAAAC+TGG - chr3.1:56202432-56202451 MS.gene63471:intron 45.0%
GCACGACTTCAATCTTGACA+AGG - chr3.1:56202490-56202509 MS.gene63471:intron 45.0%
GCAGCAATAAGGGAGAAACA+AGG - chr3.1:56201579-56201598 MS.gene63471:intron 45.0%
GCGCTTCCTATTTCCGTATT+GGG - chr3.1:56198132-56198151 MS.gene63471:CDS 45.0%
GGAAGCTGTCGCACTAATAT+TGG - chr3.1:56201136-56201155 MS.gene63471:intron 45.0%
GGACTGCACAACTTTACTAC+GGG + chr3.1:56201778-56201797 None:intergenic 45.0%
GTAAAGTTGTGCAGTCCTTG+CGG - chr3.1:56201781-56201800 MS.gene63471:intron 45.0%
GTTTAGCAGCACACCAAAGT+TGG + chr3.1:56199699-56199718 None:intergenic 45.0%
TAACCTTCTCATTGAGACCC+CGG + chr3.1:56203273-56203292 None:intergenic 45.0%
TCTACCTTGGGCACAAATGT+TGG + chr3.1:56203098-56203117 None:intergenic 45.0%
TGAGGAAGAGATTGCGAGAA+AGG - chr3.1:56201557-56201576 MS.gene63471:intron 45.0%
TGATGGCTGCATGTCAGAAT+TGG - chr3.1:56198713-56198732 MS.gene63471:CDS 45.0%
TGCGAGAAAGGCAGCAATAA+GGG - chr3.1:56201569-56201588 MS.gene63471:intron 45.0%
TGGATCATGGTCACCAACAA+TGG + chr3.1:56198524-56198543 None:intergenic 45.0%
TGGTAAAGACGAGATGGGAT+AGG - chr3.1:56200393-56200412 MS.gene63471:intron 45.0%
TGGTGGGAAATAAGCTTAGG+TGG - chr3.1:56200515-56200534 MS.gene63471:intron 45.0%
TGTTTGTGTGTGGAAACCAG+GGG + chr3.1:56203495-56203514 None:intergenic 45.0%
TTAGCAGCACACCAAAGTTG+GGG + chr3.1:56199697-56199716 None:intergenic 45.0%
TTGATCCGGTTATGGATGCA+TGG - chr3.1:56203444-56203463 MS.gene63471:intron 45.0%
TTGCCATGCGTCATGTACTT+GGG - chr3.1:56198904-56198923 MS.gene63471:CDS 45.0%
TTGCGAGAAAGGCAGCAATA+AGG - chr3.1:56201568-56201587 MS.gene63471:intron 45.0%
TTTGATCGAATGGGTGCAAC+AGG - chr3.1:56199290-56199309 MS.gene63471:intron 45.0%
TTTGCCATGCGTCATGTACT+TGG - chr3.1:56198903-56198922 MS.gene63471:CDS 45.0%
! ATAGACCTGGTGGTGAAGAT+TGG + chr3.1:56200061-56200080 None:intergenic 45.0%
! CACACTTTAAAGGTTGCAGG+TGG - chr3.1:56199087-56199106 MS.gene63471:intron 45.0%
! CAGTTTTCTCTCCCCCATTA+AGG + chr3.1:56202434-56202453 None:intergenic 45.0%
! CCAAACCTTTTCCCACTAAG+TGG + chr3.1:56200764-56200783 None:intergenic 45.0%
! CGACACACTTTAAAGGTTGC+AGG - chr3.1:56199084-56199103 MS.gene63471:intron 45.0%
! CTTTGGTGTGCTGCTAAACT+TGG - chr3.1:56199700-56199719 MS.gene63471:intron 45.0%
! GAAGCGCTATGAAGAGGAAT+TGG - chr3.1:56202189-56202208 MS.gene63471:intron 45.0%
! TAGACCTGGTGGTGAAGATT+GGG + chr3.1:56200060-56200079 None:intergenic 45.0%
! TAGAGCACTTGATCCGGTTA+TGG - chr3.1:56203436-56203455 MS.gene63471:intron 45.0%
! TGGATTGGAGTTGATCAGGT+GGG - chr3.1:56203233-56203252 MS.gene63471:intron 45.0%
! TGGGAGCTACTTTCTACCTT+GGG + chr3.1:56203110-56203129 None:intergenic 45.0%
! TTGGGAGCTACTTTCTACCT+TGG + chr3.1:56203111-56203130 None:intergenic 45.0%
! TTTTAATCGCTGCCTCCCAT+CGG + chr3.1:56202167-56202186 None:intergenic 45.0%
!! ATACCTGTGGCTTTATGTCG+CGG + chr3.1:56198325-56198344 None:intergenic 45.0%
!! ATCGTGTGGTGTTGTTACCT+TGG - chr3.1:56199726-56199745 MS.gene63471:intron 45.0%
!! CTCACCTTTTTGTTTCCGCA+AGG + chr3.1:56201799-56201818 None:intergenic 45.0%
!! GATTGTAATCGGATTGGCGT+TGG + chr3.1:56198076-56198095 None:intergenic 45.0%
!! TGGTGTTGTTACCTTGGACT+TGG - chr3.1:56199732-56199751 MS.gene63471:intron 45.0%
!!! ATCGGATTGGCGTTGGATTT+TGG + chr3.1:56198069-56198088 None:intergenic 45.0%
!! TAAAAAACTAAAATAAAAAA+TGG - chr3.1:56200918-56200937 MS.gene63471:intron 5.0%
AAAGTTGGGGCCTGTTTGGA+TGG + chr3.1:56199684-56199703 None:intergenic 50.0%
AACGCCTGGAAGCTGGAATT+CGG - chr3.1:56203378-56203397 MS.gene63471:intron 50.0%
AAGGTTGCGAGAAATGGCTG+AGG - chr3.1:56201605-56201624 MS.gene63471:intron 50.0%
AATGGGTGCAACAGGATCAG+GGG - chr3.1:56199298-56199317 MS.gene63471:intron 50.0%
ACAACTGCTGCCTTTGATCG+TGG - chr3.1:56202786-56202805 MS.gene63471:intron 50.0%
ACCAAGGAACTCCAAGTCCA+AGG + chr3.1:56199746-56199765 None:intergenic 50.0%
ACCTTGGACTTGGAGTTCCT+TGG - chr3.1:56199742-56199761 MS.gene63471:CDS 50.0%
AGCGCCATTGTCGATAACGA+TGG + chr3.1:56198117-56198136 None:intergenic 50.0%
ATCATTGAACGCCTGGAAGC+TGG - chr3.1:56203371-56203390 MS.gene63471:intron 50.0%
ATCCAAACAGGCCCCAACTT+TGG - chr3.1:56199683-56199702 MS.gene63471:intron 50.0%
CCAAAATGTGGCAGCTCCAT+TGG - chr3.1:56201505-56201524 MS.gene63471:intron 50.0%
CGATCCTTCTTAGCAGAGAC+TGG - chr3.1:56201723-56201742 MS.gene63471:CDS 50.0%
CGATGACGATGAACCAGATG+AGG - chr3.1:56202884-56202903 MS.gene63471:intron 50.0%
CGCTACAACCCATGTGATTC+CGG - chr3.1:56200342-56200361 MS.gene63471:intron 50.0%
CTCCAATGGTAGGTCCTGTT+TGG - chr3.1:56199408-56199427 MS.gene63471:CDS 50.0%
CTCGCAATCTCTTCCTCAGA+AGG + chr3.1:56201555-56201574 None:intergenic 50.0%
GAATGCTGCGTCAACACCAA+AGG + chr3.1:56200257-56200276 None:intergenic 50.0%
GAATGGGTGCAACAGGATCA+GGG - chr3.1:56199297-56199316 MS.gene63471:intron 50.0%
GAGAGAGAGAGAGAGAGAGT+TGG - chr3.1:56200469-56200488 MS.gene63471:CDS 50.0%
GATCAAAGGCAGCAGTTGTC+AGG + chr3.1:56202785-56202804 None:intergenic 50.0%
GCAATCTCTTCCTCAGAAGG+AGG + chr3.1:56201552-56201571 None:intergenic 50.0%
GCCGTGTTGTGTGTATGTGT+TGG - chr3.1:56202988-56203007 MS.gene63471:intron 50.0%
GCGCCATTGTCGATAACGAT+GGG + chr3.1:56198116-56198135 None:intergenic 50.0%
GCTGCCTTTGATCGTGGTAA+GGG - chr3.1:56202792-56202811 MS.gene63471:intron 50.0%
GCTTCCACCAGTCACAAGTA+TGG + chr3.1:56203336-56203355 None:intergenic 50.0%
GGAGAACCCAGAGCTTTACT+TGG - chr3.1:56202596-56202615 MS.gene63471:intron 50.0%
GGATCCAACATTTGTGCCCA+AGG - chr3.1:56203091-56203110 MS.gene63471:CDS 50.0%
GGCGCTTCCTATTTCCGTAT+TGG - chr3.1:56198131-56198150 MS.gene63471:CDS 50.0%
GGTAAGGGCGAGGATACATT+TGG - chr3.1:56202807-56202826 MS.gene63471:intron 50.0%
GGTGGTGAAGATTGGGCATA+AGG + chr3.1:56200053-56200072 None:intergenic 50.0%
TATGCCCAATCTTCACCACC+AGG - chr3.1:56200053-56200072 MS.gene63471:CDS 50.0%
TCAGGTGGGGTTAGATGAGA+TGG - chr3.1:56203247-56203266 MS.gene63471:intron 50.0%
TCATCCGAATTCCAGCTTCC+AGG + chr3.1:56203385-56203404 None:intergenic 50.0%
TCGCTTTCGAATGCTGATCG+TGG + chr3.1:56198583-56198602 None:intergenic 50.0%
TCTCTTCAAGGCTCCAGGTT+AGG - chr3.1:56202928-56202947 MS.gene63471:intron 50.0%
TGCTGCCTTTGATCGTGGTA+AGG - chr3.1:56202791-56202810 MS.gene63471:intron 50.0%
TTCTCATTAGACGCAGCGTC+AGG + chr3.1:56201840-56201859 None:intergenic 50.0%
! ACATGGGTTGTAGCGAATCC+AGG + chr3.1:56200337-56200356 None:intergenic 50.0%
! AGAGACTCAGTGCTGCTCAA+AGG - chr3.1:56202745-56202764 MS.gene63471:intron 50.0%
! CAGAGACTGGCTATGTCTCT+AGG - chr3.1:56201736-56201755 MS.gene63471:CDS 50.0%
! CCAATGGAGCTGCCACATTT+TGG + chr3.1:56201508-56201527 None:intergenic 50.0%
! CTGGATTGGAGTTGATCAGG+TGG - chr3.1:56203232-56203251 MS.gene63471:intron 50.0%
! CTTTTCCCACTAAGTGGGGT+CGG + chr3.1:56200758-56200777 None:intergenic 50.0%
! GAGACTCAGTGCTGCTCAAA+GGG - chr3.1:56202746-56202765 MS.gene63471:intron 50.0%
! GATGGTCTTGCTATGTGTCC+TGG - chr3.1:56200316-56200335 MS.gene63471:intron 50.0%
! GCTAAACTTGGTGGATCGTG+TGG - chr3.1:56199712-56199731 MS.gene63471:intron 50.0%
! GGATTGGAGTTGATCAGGTG+GGG - chr3.1:56203234-56203253 MS.gene63471:intron 50.0%
! TGGTGTGCTGCTAAACTTGG+TGG - chr3.1:56199703-56199722 MS.gene63471:intron 50.0%
! TTTTCTGCCATGCCAGCCTT+TGG - chr3.1:56200238-56200257 MS.gene63471:intron 50.0%
!! TTGACAGGTAGTGTTGGTCG+TGG - chr3.1:56202720-56202739 MS.gene63471:intron 50.0%
AAGTAGCTCCCAACCTGCTG+AGG - chr3.1:56203118-56203137 MS.gene63471:intron 55.0%
AATGGAGGCTCCTCCACGAA+TGG - chr3.1:56202684-56202703 MS.gene63471:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr3.1:56200750-56200769 None:intergenic 55.0%
AGCTTGCCCGCATCTCTTCA+AGG - chr3.1:56202916-56202935 MS.gene63471:intron 55.0%
AGTTGAGGAGCCTCCTTCTG+AGG - chr3.1:56201539-56201558 MS.gene63471:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr3.1:56200749-56200768 MS.gene63471:intron 55.0%
CAAAGGCAGCAGTTGTCAGG+AGG + chr3.1:56202782-56202801 None:intergenic 55.0%
CACCAAAGTTGGGGCCTGTT+TGG + chr3.1:56199688-56199707 None:intergenic 55.0%
CATCCCGGATGACATGCTGA+CGG - chr3.1:56201875-56201894 MS.gene63471:intron 55.0%
CCACGCCATGCATCCATAAC+CGG + chr3.1:56203452-56203471 None:intergenic 55.0%
CCAGGCGTTCAATGATGCCA+GGG + chr3.1:56203367-56203386 None:intergenic 55.0%
CCTGGAGCCTTGAAGAGATG+CGG + chr3.1:56202926-56202945 None:intergenic 55.0%
CGAATGGGTGCAACAGGATC+AGG - chr3.1:56199296-56199315 MS.gene63471:intron 55.0%
CGACCCCACTTAGTGGGAAA+AGG - chr3.1:56200756-56200775 MS.gene63471:intron 55.0%
CTCGCCCTTACCACGATCAA+AGG + chr3.1:56202799-56202818 None:intergenic 55.0%
CTGGAGCCTTGAAGAGATGC+GGG + chr3.1:56202925-56202944 None:intergenic 55.0%
CTGGCAGAAAGGAGCTAAGG+AGG - chr3.1:56201470-56201489 MS.gene63471:intron 55.0%
CTTTGATCGTGGTAAGGGCG+AGG - chr3.1:56202797-56202816 MS.gene63471:intron 55.0%
GAGAAATGGCTGAGGCGAAG+AGG - chr3.1:56201613-56201632 MS.gene63471:intron 55.0%
GGCTCCTCCACGAATGGAAA+TGG - chr3.1:56202690-56202709 MS.gene63471:intron 55.0%
GGTCTGGCAGAAAGGAGCTA+AGG - chr3.1:56201467-56201486 MS.gene63471:intron 55.0%
GTCAACACCAAAGGCTGGCA+TGG + chr3.1:56200248-56200267 None:intergenic 55.0%
GTCGATAACGATGGGAGTGG+TGG + chr3.1:56198108-56198127 None:intergenic 55.0%
GTGCAACAGGATCAGGGGTA+TGG - chr3.1:56199303-56199322 MS.gene63471:intron 55.0%
GTGGGGTTAGATGAGATGGC+CGG - chr3.1:56203251-56203270 MS.gene63471:intron 55.0%
TCAGAAGGAGGCTCCTCAAC+TGG + chr3.1:56201540-56201559 None:intergenic 55.0%
TCCAGGCGTTCAATGATGCC+AGG + chr3.1:56203368-56203387 None:intergenic 55.0%
TCTGCCGTCAGCATGTCATC+CGG + chr3.1:56201882-56201901 None:intergenic 55.0%
TCTGCTTATGCATCAGCCCC+TGG - chr3.1:56203476-56203495 MS.gene63471:intron 55.0%
TGGGGTTAGATGAGATGGCC+GGG - chr3.1:56203252-56203271 MS.gene63471:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr3.1:56200750-56200769 MS.gene63471:intron 55.0%
! GACTGGCTATGTCTCTAGGC+AGG - chr3.1:56201740-56201759 MS.gene63471:CDS 55.0%
! GGTGGAAGCTCTCTTTTCCC+TGG - chr3.1:56203347-56203366 MS.gene63471:CDS 55.0%
CAACTGGAGGTGGCACCCAA+TGG + chr3.1:56201524-56201543 None:intergenic 60.0%
CCCTGGCATCATTGAACGCC+TGG - chr3.1:56203364-56203383 MS.gene63471:intron 60.0%
CCGCATCTCTTCAAGGCTCC+AGG - chr3.1:56202923-56202942 MS.gene63471:intron 60.0%
CCGGTTATGGATGCATGGCG+TGG - chr3.1:56203449-56203468 MS.gene63471:intron 60.0%
CTGCCGTCAGCATGTCATCC+GGG + chr3.1:56201881-56201900 None:intergenic 60.0%
GAAGGAGGCTCCTCAACTGG+AGG + chr3.1:56201537-56201556 None:intergenic 60.0%
GCTGCGTCAACACCAAAGGC+TGG + chr3.1:56200253-56200272 None:intergenic 60.0%
GGGGTTAGATGAGATGGCCG+GGG - chr3.1:56203253-56203272 MS.gene63471:intron 60.0%
TGACATGCTGACGGCAGAGC+AGG - chr3.1:56201884-56201903 MS.gene63471:intron 60.0%
TGGCCGGGGTCTCAATGAGA+AGG - chr3.1:56203267-56203286 MS.gene63471:intron 60.0%
! TTGGGTGCCACCTCCAGTTG+AGG - chr3.1:56201524-56201543 MS.gene63471:intron 60.0%
CGGCCGCGACATAAAGCCAC+AGG - chr3.1:56198319-56198338 MS.gene63471:CDS 65.0%
GGAGGCTCCTCAACTGGAGG+TGG + chr3.1:56201534-56201553 None:intergenic 65.0%
TTGGTGAGCGGACGAACGCG+TGG + chr3.1:56203146-56203165 None:intergenic 65.0%
GCGTGGCGCCTCAGCAGGTT+GGG + chr3.1:56203129-56203148 None:intergenic 70.0%
CGAACGCGTGGCGCCTCAGC+AGG + chr3.1:56203134-56203153 None:intergenic 75.0%
CGCGTGGCGCCTCAGCAGGT+TGG + chr3.1:56203130-56203149 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 56198053 56203586 56198053 ID=MS.gene63471
chr3.1 mRNA 56198053 56203586 56198053 ID=MS.gene63471.t1;Parent=MS.gene63471
chr3.1 exon 56203486 56203586 56203486 ID=MS.gene63471.t1.exon1;Parent=MS.gene63471.t1
chr3.1 CDS 56203486 56203586 56203486 ID=cds.MS.gene63471.t1;Parent=MS.gene63471.t1
chr3.1 exon 56203299 56203369 56203299 ID=MS.gene63471.t1.exon2;Parent=MS.gene63471.t1
chr3.1 CDS 56203299 56203369 56203299 ID=cds.MS.gene63471.t1;Parent=MS.gene63471.t1
chr3.1 exon 56203006 56203130 56203006 ID=MS.gene63471.t1.exon3;Parent=MS.gene63471.t1
chr3.1 CDS 56203006 56203130 56203006 ID=cds.MS.gene63471.t1;Parent=MS.gene63471.t1
chr3.1 exon 56202320 56202364 56202320 ID=MS.gene63471.t1.exon4;Parent=MS.gene63471.t1
chr3.1 CDS 56202320 56202364 56202320 ID=cds.MS.gene63471.t1;Parent=MS.gene63471.t1
chr3.1 exon 56201681 56201783 56201681 ID=MS.gene63471.t1.exon5;Parent=MS.gene63471.t1
chr3.1 CDS 56201681 56201783 56201681 ID=cds.MS.gene63471.t1;Parent=MS.gene63471.t1
chr3.1 exon 56201276 56201385 56201276 ID=MS.gene63471.t1.exon6;Parent=MS.gene63471.t1
chr3.1 CDS 56201276 56201385 56201276 ID=cds.MS.gene63471.t1;Parent=MS.gene63471.t1
chr3.1 exon 56200421 56200530 56200421 ID=MS.gene63471.t1.exon7;Parent=MS.gene63471.t1
chr3.1 CDS 56200421 56200530 56200421 ID=cds.MS.gene63471.t1;Parent=MS.gene63471.t1
chr3.1 exon 56200241 56200331 56200241 ID=MS.gene63471.t1.exon8;Parent=MS.gene63471.t1
chr3.1 CDS 56200241 56200331 56200241 ID=cds.MS.gene63471.t1;Parent=MS.gene63471.t1
chr3.1 exon 56199734 56200162 56199734 ID=MS.gene63471.t1.exon9;Parent=MS.gene63471.t1
chr3.1 CDS 56199734 56200162 56199734 ID=cds.MS.gene63471.t1;Parent=MS.gene63471.t1
chr3.1 exon 56199388 56199515 56199388 ID=MS.gene63471.t1.exon10;Parent=MS.gene63471.t1
chr3.1 CDS 56199388 56199515 56199388 ID=cds.MS.gene63471.t1;Parent=MS.gene63471.t1
chr3.1 exon 56198695 56199043 56198695 ID=MS.gene63471.t1.exon11;Parent=MS.gene63471.t1
chr3.1 CDS 56198695 56199043 56198695 ID=cds.MS.gene63471.t1;Parent=MS.gene63471.t1
chr3.1 exon 56198053 56198553 56198053 ID=MS.gene63471.t1.exon12;Parent=MS.gene63471.t1
chr3.1 CDS 56198053 56198553 56198053 ID=cds.MS.gene63471.t1;Parent=MS.gene63471.t1
Gene Sequence

>MS.gene63471

ATGCCTTTCATCTCCAAAATCCAACGCCAATCCGATTACAATCGCTTCAGTTCCACCACTCCCATCGTTATCGACAATGGCGCTTCCTATTTCCGTATTGGGTACTCTCTCAAACCCTAATTTCACTTCAAAACGTGGTTTCTTTGAATTTTGAATATTTTCATCATGGGTTTTTGATTTTAACTTCAAAGTTTGTTCCTTTTTGGTGAATTTTTAGATGGGCTGGTGAGTCTGAACCTCGTGTTGTTTTTCGCAACATTGTTCAACGGCCGCGACATAAAGCCACAGGTATCTTTTTCTTCATCTGAATTATTGTGTCATTAATGTTGTTAAGATTGTTGTTTTTTGCTAGTTTTTGTTTGAATTGTTTTACATTAGTCTATGTTTAGCAAACATAAGGTTAATTGTTGGGATATTGAATAATTAATAGTTAATTTTTAACATTGTGTGACACAGGAGAAACTGTTACCATTGTTGGTGACCATGATCCAGCATTGTTGAAGTACTTTGATTGTACTCGCTCTGGACCACGATCAGCATTCGAAAGCGATGTTGTTTTTCAGTTTGAGATAATGGAATATGTAAGTCTTCCTGTTACAATTATGTGAGTATAGGAGGAATAATTTTTTTTTTAGCCTATTTTGATGTAGTGACCTATTTTGATGGCTGCATGTCAGAATTGGAAATTGCATTTGTGTGAAAAAATATGGTAGTGCTTCCTGTTTTGTTGCCATAGATAGGTTTGAACTTATGAGATTCCTGTGTTGTTTAGTTGTTGATCTAACCAAAATGAACGCCACAAGCAATATGAATAATTTCTAACTAGGGAAATAGGTTTAAGAGTACAAACTTTGCCATGCGTCATGTACTTGGGATTTACATATTCCTAAAACTAACACACAAAAATGGTGCAGTGCATCTGTCAGTGTTAAAGTTCCTTTTTGTAGTATGAACAAGTAATGGATGCATTGTTCTCCTTGTATGACATTAACATATATGAATGAATTGAAGTGAGACAATAAGGTTTGGCACGACACACTTTAAAGGTTGCAGGTGGAATGTAACCATATGTTCATAGGTTCATAACAACTAGTTAGGGAGGTGTACCATATTACATATTATGGGAATATGGTCATTAATGTACAGTGTTTTAAGGTGTAGAATTCATTAATTTTTAAATCATATCAAGTAACACATTACTAACACGTTGTTTCATCTTCAGATTCTGGACTTTGCTTTTGATCGAATGGGTGCAACAGGATCAGGGGTATGGCCATGAGTAAAGTGTTTTTTTATGTCTTCACAGAGCATTTAGTCTATTATCTTTGCTATTTAGACATGTCAGTAATATTAAACTCCAATGGTAGGTCCTGTTTGGATAAACACCATAATTTGCAGCTTATATCATAAGCATTTATCATGATAAGCGCTTATGTATAACCTATTTCTATAAAAAGATAAAATAAAGTTAAGTTGTTTTTTTATAATCTATAAGATGTTCTCATAAGCTATCTTGGAGAGCTGATGAACATAAGCTGAAACAGCTTATGAACATGCCATAAGTTGTTTTCATAAGTTCTCACAAACAAACTCACAAGTGCTTATGTCAGTAGATAGCTCAAATAAGTCCATCCAAACAGGCCCCAACTTTGGTGTGCTGCTAAACTTGGTGGATCGTGTGGTGTTGTTACCTTGGACTTGGAGTTCCTTGGTTTTGTAAATACATGTTTTCATTTTTTCACTTCTAGCGTTTAAATTATTTTGACTCACTCTTTGATATTTCTATGTTTAATGCCAGAGCAGATTGATCATCCTATCCTGATCACAGAATGTGTATGCAACCCAGTTCAATCTCGAAGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGGTACTAATACTTTTTAACCCTACAATGGCAAAAGCCTTGATCTTTTACAAGAGCCTTAGTAGTAGAAACAGAAGCGTTGCATTGCCTGTTGCCTTATGCCCAATCTTCACCACCAGGTCTATTCGTAAATGAAAACATAAATCTATGCAAAGCTCTAGCAGACCATGTTTGACATCTTGTGACATAGTTATTACTGGTTTGGACACATTGCATATGCATGTTGATATCTGTTTAAGTTAGGCATTGTACATGTAATTTTATGGACTAAGCTATTTGTGCTTTTCTGCCATGCCAGCCTTTGGTGTTGACGCAGCATTCAGCTATAAATATAACCAACAACGAAGTGTTTGTGATAAAGATGGTCTTGCTATGTGTCCTGGATTCGCTACAACCCATGTGATTCCGGTATGCTATTTGCTTTATTAAGGATTTTATGGTAAAGACGAGATGGGATAGGATTAGAAATGACGATATTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTGGGATAGCACCTATAGTTGAAAAGATGGTGGGAAATAAGCTTAGGATAGTTGAAAAGATGGTGGGAAATAAGCTTAGGTGGTTTGGACATGTCGAGAGAAGACCTATAGATTCTGTAATAAGGAGAGTAGATCAGATGGAGCATAGTCAGGTCAATAGACATAGAAAAACTATCAGAGTAACTATTAGGAAAGAGTTGGAAATTAATGAGTTGGACCGAAATATGGCTTATGATAGAACATTATGGTGTAATTTGATCCATGTAGCCGACCCCACTTAGTGGGAAAAGGTTTGGTTGTTGTTGTTGTTGCTTTATTTAAGGATTTTATATGTGAAGAAAATAAGTTTTCAATGTCTTATTGAAGATCATTATGACTGTGTCCTCACAGACAAACATTGTTAAAAAAACTGTAGGGGAAAAAATAAGTATAAAAAACTAAAATAAAAAATGGTATATTTTGTTTTATAAATTTTTAAATAAATAGGATGAATCATTTTCAATGGTCAGTTCTGCTGTTTTGCAGAGTTGCTTGTAGGAATTAGATGTCCTGCCAAATGTGTAAAGTGTTAATAATTATTTATAATTTCTAATATTCTTCATTTATTTTTTATATTTTCAGTTTGTTGACGGGGAACCAATTTATAAAGGAAGCTGTCGCACTAATATTGGTGGATTTCATGTGACTGATTATTTTCAGCGACTTCTTTCACTTAAATATCCTTATCATATGTGAGTGTGAAATCATCCTGCTTTTGCTATTACCAAGCTAACCCCTAAATACGTACTATTTCTTACGTCTTATTAAATTCTCAATACAGGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTATGTTGCACAGGACTATGTTTCAGAAGCTCGATTGTTTCTGGTAAGAAATAGGTTCTTCTTCCCCGTCTAAGTTTTTCTACTGTTCCTAAGACTTATACGCCATTTAATGGTCTGGCAGAAAGGAGCTAAGGAGGCCGAAGAAAAAACCAAAATGTGGCAGCTCCATTGGGTGCCACCTCCAGTTGAGGAGCCTCCTTCTGAGGAAGAGATTGCGAGAAAGGCAGCAATAAGGGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCTGAGGCGAAGAGGTCATCAAAAATAAATGAGCTGGAAAATGAATTACGTGGTTTGGAATTTCTTTTGAATCAACTTGGACATGTTCAAGAGAGTGATGTACGATCCTTCTTAGCAGAGACTGGCTATGTCTCTAGGCAGGAAGTAGAATCTGCCCGTAGTAAAGTTGTGCAGTCCTTGCGGAAACAAAAAGGTGAGCAAACTGAAATTGAAAAACCTGACGCTGCGTCTAATGAGAAGTATACGCTTATAAACATCCCGGATGACATGCTGACGGCAGAGCAGGTGATTTTTTCTTTTTACAATTGTTTTTCTGTCACGTGCATTGTGAAATTGAACTCCCTGTCATCACACCCTTCAAATATGCTTGTAGCTTCTTTTTTTTTTTTTTTTGCTTGGATCCATTTGTGCTTATAGTCTTAATATCCAAATAATTTCTTAGAAAATTGTTTACTGTGGCTTGCAAAGTTGACAATGTTTGTTGGGTTTTGCTTTTTTGATAGCTTGTTGAAAAGAGGAAACAGCTGTCAATTAAATCTATGTCCGATGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAATTGGAAAGGGAAAGGAAACAACAGCTAGAAGAGGAGAGACGCCTGTATGTTCCATGCTTCAATTTATTCAAGCTTGATTAAAATTACTCTGTTACATATTCATGCGAGCAAGAGATGGTATTCAGCTTAGTGAAATGGGAAAATTTAAATATGTGTGTGTGTGAGTGAGTGAGAGAGAGAGAGAGAGAGAGCAATCATCTGTCTAGTTTAAGCTTACTAAGTTCCTTAATGGGGGAGAGAAAACTGGCTAAATCTTTAGGACAAGGCTTTTGTACAAAGCATGCACGACTTCAATCTTGACAAGGCTTGAATACTTCTAAATAATTAGTAGTGATTTTTTATGCTTTAAAATGTTTCTGATTGGTTTCTTTGGACATTCTTAACATAGGGAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCCAAATACAAGGACCTTTCGGAGAAAATTGACCAACGTAAACGACTCAAAACAAATGGAGGCTCCTCCACGAATGGAAATGGAAATAGTTTGACAGGTAGTGTTGGTCGTGGTGAGAGACTCAGTGCTGCTCAAAGGGAGAGAATGCGCCTCCTGACAACTGCTGCCTTTGATCGTGGTAAGGGCGAGGATACATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTGATGAGCAAAGATAATGATGACGATGACGATGAACCAGATGAGGATAACACAGAGCTTGCCCGCATCTCTTCAAGGCTCCAGGTTAGGTCGAGTCTTTTATAATGTGGAACCTAACCTAAAATTAGCCGTGTTGTGTGTATGTGTTGGTATGGTTATTGTAGATTTCCTTGTATCAAAGAACTCTCATGACTAAAAAATCCTGTTGATATGTTGGTTTGGTAGGACTTGGATCCAACATTTGTGCCCAAGGTAGAAAGTAGCTCCCAACCTGCTGAGGCGCCACGCGTTCGTCCGCTCACCAAAGAAGATTTTCAGATTGTTTTCGGAGTTGAAAGGTTTAGGTGCCCTGAAATTTTGTTCAGTCCAAACTGGATTGGAGTTGATCAGGTGGGGTTAGATGAGATGGCCGGGGTCTCAATGAGAAGGTTATCATGTAAGGATGAAAAGCTGGAACAGAGAATGACTAATTCCATACTTGTGACTGGTGGAAGCTCTCTTTTCCCTGGCATCATTGAACGCCTGGAAGCTGGAATTCGGATGATTAGACCCTGCGGTTCGCCTATAAAAATAGTTAGAGCACTTGATCCGGTTATGGATGCATGGCGTGGTGCGTCTGCTTATGCATCAGCCCCTGGTTTCCACACACAAACATTCACTAGGATGGATTATTATGAAAAAGGTGAAGATTGGCTTCGTAATTATCAACTGAAATATTCATTGTAA
Protein sequence

>MS.gene63471.t1

MPFISKIQRQSDYNRFSSTTPIVIDNGASYFRIGWAGESEPRVVFRNIVQRPRHKATGETVTIVGDHDPALLKYFDCTRSGPRSAFESDVVFQFEIMEYILDFAFDRMGATGSGIDHPILITECVCNPVQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQQRSVCDKDGLAMCPGFATTHVIPFVDGEPIYKGSCRTNIGGFHVTDYFQRLLSLKYPYHMARFTWEKVEDLKMEHCYVAQDYVSEARLFLKGAKEAEEKTKMWQLHWVPPPVEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSKINELENELRGLEFLLNQLGHVQESDVRSFLAETGYVSRQEVESARSKVVQSLRKQKGEQTEIEKPDAASNEKYTLINIPDDMLTAEQLVEKRKQLSIKSMSDGRQRLKQKRYEEELERERKQQLEEERRLENPELYLEQLRAKYKDLSEKIDQRKRLKTNGGSSTNGNGNSLTGSVGRGERLSAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDDDEPDEDNTELARISSRLQDLDPTFVPKVESSSQPAEAPRVRPLTKEDFQIVFGVERFRCPEILFSPNWIGVDQVGLDEMAGVSMRRLSCKDEKLEQRMTNSILVTGGSSLFPGIIERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGASAYASAPGFHTQTFTRMDYYEKGEDWLRNYQLKYSL