Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63968.t1 | KEH42696.1 | 97.3 | 291 | 7 | 1 | 1 | 290 | 32 | 322 | 6.00E-127 | 463.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63968.t1 | Q8GWQ2 | 62.2 | 296 | 90 | 5 | 2 | 290 | 1 | 281 | 2.3e-82 | 307.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63968.t1 | A0A072VM41 | 97.3 | 291 | 7 | 1 | 1 | 290 | 32 | 322 | 4.3e-127 | 463.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene63968 | 0.822769 | 1.98E-53 | -1.69E-46 |
| MS.gene05240 | MS.gene63968 | 0.807581 | 4.71E-50 | -1.69E-46 |
| MS.gene05244 | MS.gene63968 | 0.808699 | 2.72E-50 | -1.69E-46 |
| MS.gene052606 | MS.gene63968 | 0.803941 | 2.74E-49 | -1.69E-46 |
| MS.gene053421 | MS.gene63968 | 0.825769 | 3.91E-54 | -1.69E-46 |
| MS.gene053776 | MS.gene63968 | 0.804763 | 1.85E-49 | -1.69E-46 |
| MS.gene054290 | MS.gene63968 | 0.80858 | 2.89E-50 | -1.69E-46 |
| MS.gene054706 | MS.gene63968 | 0.833225 | 6.03E-56 | -1.69E-46 |
| MS.gene056590 | MS.gene63968 | 0.836168 | 1.10E-56 | -1.69E-46 |
| MS.gene056591 | MS.gene63968 | 0.83359 | 4.89E-56 | -1.69E-46 |
| MS.gene056688 | MS.gene63968 | 0.818187 | 2.23E-52 | -1.69E-46 |
| MS.gene057261 | MS.gene63968 | 0.808143 | 3.58E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 107 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACTTGGTGAGTGGGTTCC+TGG | 0.152889 | 1.4:+60296958 | None:intergenic |
| CCAAATTTGTTGCCTAATAA+TGG | 0.209471 | 1.4:-60296220 | MS.gene63968:CDS |
| CCATTATTAGGCAACAAATT+TGG | 0.219989 | 1.4:+60296220 | None:intergenic |
| ACAATTCAAGGAGGGTTATC+TGG | 0.264024 | 1.4:-60296988 | MS.gene63968:CDS |
| ACATGGCTCTTCAAAGCATT+TGG | 0.272297 | 1.4:+60296751 | None:intergenic |
| GTTACAAAGATGGGTGGTTT+TGG | 0.295281 | 1.4:+60296784 | None:intergenic |
| CTTGCCTGGGCTGCTGCTCA+TGG | 0.299376 | 1.4:-60296175 | MS.gene63968:CDS |
| CCCATCTGCCCTCCATTATT+AGG | 0.325156 | 1.4:+60296208 | None:intergenic |
| AAATACTACAACAGCAGTTC+TGG | 0.340855 | 1.4:-60297025 | None:intergenic |
| CCACTCAACTCAACTCAATA+AGG | 0.342276 | 1.4:+60296145 | None:intergenic |
| AGTGTACTTGGCTGGAGGTC+AGG | 0.342488 | 1.4:-60296500 | MS.gene63968:CDS |
| GGTGCTGTTGTAGCACTTCA+TGG | 0.358357 | 1.4:-60296595 | MS.gene63968:CDS |
| CCTGCTCCACCAGGTTCAAC+TGG | 0.375523 | 1.4:-60296529 | MS.gene63968:CDS |
| GATCCAGGTGGTCTTCCTCT+TGG | 0.385010 | 1.4:+60296817 | None:intergenic |
| CATGGCTCTTCAAAGCATTT+GGG | 0.396581 | 1.4:+60296752 | None:intergenic |
| TGGGACATGAGGCTCTTGCC+TGG | 0.399930 | 1.4:-60296189 | MS.gene63968:CDS |
| GTAGTTGGAGGTTGTGTTGT+TGG | 0.411543 | 1.4:-60296472 | MS.gene63968:CDS |
| GGAGGTCAGGGTCAGGTAGT+TGG | 0.413964 | 1.4:-60296487 | MS.gene63968:CDS |
| GTGGTCTTCCTCTTGGTCTT+CGG | 0.414167 | 1.4:+60296824 | None:intergenic |
| TGCAACTGATGACCAATTCC+TGG | 0.414250 | 1.4:+60296289 | None:intergenic |
| GGATCGCCTCCACCAGGAAT+TGG | 0.416217 | 1.4:-60296301 | MS.gene63968:CDS |
| CAATTCAAGGAGGGTTATCT+GGG | 0.426102 | 1.4:-60296987 | MS.gene63968:CDS |
| CTACCTGGTCCTGCTCCACC+AGG | 0.428797 | 1.4:-60296538 | MS.gene63968:CDS |
| GCTATCTCTTGTTACAAAGA+TGG | 0.435101 | 1.4:+60296774 | None:intergenic |
| GTGCAAGGTGGAGGAGCGTC+TGG | 0.440396 | 1.4:-60296325 | MS.gene63968:CDS |
| CTTGGCTGGAGGTCAGGGTC+AGG | 0.442843 | 1.4:-60296494 | MS.gene63968:CDS |
| AACTGGTCTTACAGTGTACT+TGG | 0.444380 | 1.4:-60296512 | MS.gene63968:CDS |
| AGGAATTGGTCATCAGTTGC+AGG | 0.445128 | 1.4:-60296287 | MS.gene63968:CDS |
| GTTGGAACTCTTGTTGCAGT+TGG | 0.451198 | 1.4:-60296454 | MS.gene63968:CDS |
| CACTTGGTGAGTGGGTTCCT+GGG | 0.452332 | 1.4:+60296959 | None:intergenic |
| TTGGTCATCAGTTGCAGGGT+GGG | 0.456584 | 1.4:-60296282 | MS.gene63968:CDS |
| GCCTAATAATGGAGGGCAGA+TGG | 0.462555 | 1.4:-60296209 | MS.gene63968:CDS |
| AATCCTTGGTGGACAATTCA+AGG | 0.465438 | 1.4:-60297000 | MS.gene63968:CDS |
| GCGGGAGGTGTGCAAGGTGG+AGG | 0.466037 | 1.4:-60296334 | MS.gene63968:CDS |
| CTATCTCTTGTTACAAAGAT+GGG | 0.474278 | 1.4:+60296775 | None:intergenic |
| TGCACACCTCCCGCAGAACC+AGG | 0.475741 | 1.4:+60296343 | None:intergenic |
| AAAGGCATGGAAGAAGGATC+TGG | 0.482278 | 1.4:+60296256 | None:intergenic |
| CCAGTTGAACCTGGTGGAGC+AGG | 0.482936 | 1.4:+60296529 | None:intergenic |
| AATGAAGGGCCTGGTTCTGC+GGG | 0.484847 | 1.4:-60296352 | MS.gene63968:CDS |
| GGTTCTGCGGGAGGTGTGCA+AGG | 0.486519 | 1.4:-60296340 | MS.gene63968:CDS |
| CTGTTGTAGCACTTCATGGT+AGG | 0.488288 | 1.4:-60296591 | MS.gene63968:CDS |
| GTGTACTTGGCTGGAGGTCA+GGG | 0.493209 | 1.4:-60296499 | MS.gene63968:CDS |
| GGGACATGAGGCTCTTGCCT+GGG | 0.498915 | 1.4:-60296188 | MS.gene63968:CDS |
| TTCTGCTATATCAGCTCCAC+CGG | 0.501001 | 1.4:+60296717 | None:intergenic |
| CCTAATAATGGAGGGCAGAT+GGG | 0.501432 | 1.4:-60296208 | MS.gene63968:CDS |
| GTTTAAACCACTTGGTGAGT+GGG | 0.503662 | 1.4:+60296951 | None:intergenic |
| ACTTCAACTGCACCTTCTCT+AGG | 0.505701 | 1.4:+60296853 | None:intergenic |
| AGGTAGAAAAGTCCCGGTTA+AGG | 0.506619 | 1.4:+60296555 | None:intergenic |
| GATGATAATGATAATAATGA+AGG | 0.507615 | 1.4:-60296367 | MS.gene63968:CDS |
| TCTTCCATGAGCAGCAGCCC+AGG | 0.509624 | 1.4:+60296171 | None:intergenic |
| GGTCAGGGTCAGGTAGTTGG+AGG | 0.515248 | 1.4:-60296484 | MS.gene63968:CDS |
| CAGCAGTTCTGGCTAATCCT+TGG | 0.516441 | 1.4:-60297014 | MS.gene63968:CDS |
| CTTAGACAACCTTCAGCTCC+TGG | 0.520193 | 1.4:-60296616 | MS.gene63968:CDS |
| TTATTAGGCAACAAATTTGG+TGG | 0.521583 | 1.4:+60296223 | None:intergenic |
| TTATACAAAGGCATGGAAGA+AGG | 0.526106 | 1.4:+60296250 | None:intergenic |
| GGTCTTACAGTGTACTTGGC+TGG | 0.537231 | 1.4:-60296508 | MS.gene63968:CDS |
| AATGATAATAATGAAGGGCC+TGG | 0.537636 | 1.4:-60296361 | MS.gene63968:CDS |
| TGTTTAAACCACTTGGTGAG+TGG | 0.539187 | 1.4:+60296950 | None:intergenic |
| CAGTTCTGGCTAATCCTTGG+TGG | 0.541662 | 1.4:-60297011 | MS.gene63968:CDS |
| TAATGAAGGGCCTGGTTCTG+CGG | 0.545608 | 1.4:-60296353 | MS.gene63968:CDS |
| AGAGAAGGTGCAGTTGAAGT+TGG | 0.547259 | 1.4:-60296850 | MS.gene63968:CDS |
| TGCTTTGAAGAGCCATGTCA+TGG | 0.550949 | 1.4:-60296746 | MS.gene63968:CDS |
| TGGTGTTTGTTTAAACCACT+TGG | 0.552489 | 1.4:+60296943 | None:intergenic |
| GTTTGTGTTCTCAGTGGAAG+TGG | 0.555754 | 1.4:-60296658 | MS.gene63968:CDS |
| GAACCTGGTGGAGCAGGACC+AGG | 0.556098 | 1.4:+60296535 | None:intergenic |
| AATTTGTTGCCTAATAATGG+AGG | 0.564310 | 1.4:-60296217 | MS.gene63968:CDS |
| GTGTGGCACAATTCGCAAGA+AGG | 0.565025 | 1.4:-60296693 | MS.gene63968:CDS |
| TCTGGTGGATCGCCTCCACC+AGG | 0.566478 | 1.4:-60296307 | MS.gene63968:CDS |
| TGATTGTTAGGTTTGTGTTG+TGG | 0.569261 | 1.4:+60296923 | None:intergenic |
| AGCCATGTCATGGAGGTAGC+CGG | 0.569908 | 1.4:-60296736 | MS.gene63968:CDS |
| GGGTTATCTGGGGTTGACCC+AGG | 0.573460 | 1.4:-60296976 | MS.gene63968:CDS |
| GAAGGGCCTGGTTCTGCGGG+AGG | 0.573762 | 1.4:-60296349 | MS.gene63968:CDS |
| CGCGGTGTTTGTGTTCTCAG+TGG | 0.579327 | 1.4:-60296664 | MS.gene63968:CDS |
| TCATTATCATCGTCATCAAG+TGG | 0.580583 | 1.4:+60296379 | None:intergenic |
| TGATGACCAATTCCTGGTGG+AGG | 0.582864 | 1.4:+60296295 | None:intergenic |
| ACTGTAAGACCAGTTGAACC+TGG | 0.584188 | 1.4:+60296520 | None:intergenic |
| AGACCAAGAGGAAGACCACC+TGG | 0.587335 | 1.4:-60296820 | MS.gene63968:CDS |
| AGGACCAGGTAGAAAAGTCC+CGG | 0.591266 | 1.4:+60296549 | None:intergenic |
| TGGCAAATTATACAAAGGCA+TGG | 0.593563 | 1.4:+60296243 | None:intergenic |
| TGGAGGGCAGATGGGACATG+AGG | 0.594853 | 1.4:-60296200 | MS.gene63968:CDS |
| TCTGCGGGAGGTGTGCAAGG+TGG | 0.595107 | 1.4:-60296337 | MS.gene63968:CDS |
| TTTGGTGGCAAATTATACAA+AGG | 0.596262 | 1.4:+60296238 | None:intergenic |
| ACAACAGCACCAGGAGCTGA+AGG | 0.601528 | 1.4:+60296607 | None:intergenic |
| CACCGGCTACCTCCATGACA+TGG | 0.602203 | 1.4:+60296734 | None:intergenic |
| TGAAGTGCTACAACAGCACC+AGG | 0.605157 | 1.4:+60296598 | None:intergenic |
| ATGATAATGATAATAATGAA+GGG | 0.605731 | 1.4:-60296366 | MS.gene63968:CDS |
| ATTTGTTGCCTAATAATGGA+GGG | 0.617852 | 1.4:-60296216 | MS.gene63968:CDS |
| TCTCTTGTTACAAAGATGGG+TGG | 0.617894 | 1.4:+60296778 | None:intergenic |
| CAAGGTGGAGGAGCGTCTGG+TGG | 0.620899 | 1.4:-60296322 | MS.gene63968:CDS |
| GGAATTGGTCATCAGTTGCA+GGG | 0.626929 | 1.4:-60296286 | MS.gene63968:CDS |
| CTTGGTGGACAATTCAAGGA+GGG | 0.630959 | 1.4:-60296996 | MS.gene63968:CDS |
| AGCTGATATAGCAGAAAGTG+TGG | 0.642948 | 1.4:-60296710 | MS.gene63968:CDS |
| CTTACAGTGTACTTGGCTGG+AGG | 0.650202 | 1.4:-60296505 | MS.gene63968:CDS |
| ATTGGTCATCAGTTGCAGGG+TGG | 0.653304 | 1.4:-60296283 | MS.gene63968:CDS |
| AACAGAGATGAACCTAGAGA+AGG | 0.663205 | 1.4:-60296865 | MS.gene63968:CDS |
| GTTGGTAACCGAAGACCAAG+AGG | 0.671648 | 1.4:-60296832 | MS.gene63968:CDS |
| CTCAACTCAACTCAATAAGG+TGG | 0.676109 | 1.4:+60296148 | None:intergenic |
| CCAGGAACCCACTCACCAAG+TGG | 0.676419 | 1.4:-60296958 | MS.gene63968:CDS |
| AACTGATGACCAATTCCTGG+TGG | 0.683488 | 1.4:+60296292 | None:intergenic |
| CCTCCTTGAATTGTCCACCA+AGG | 0.691826 | 1.4:+60296997 | None:intergenic |
| CATGTCATGGAGGTAGCCGG+TGG | 0.697813 | 1.4:-60296733 | MS.gene63968:CDS |
| GTAAGACCAGTTGAACCTGG+TGG | 0.698978 | 1.4:+60296523 | None:intergenic |
| AGTAGCATTAGTAAACGTAG+CGG | 0.707477 | 1.4:+60296414 | None:intergenic |
| AATTCAAGGAGGGTTATCTG+GGG | 0.712203 | 1.4:-60296986 | MS.gene63968:CDS |
| CCTTGGTGGACAATTCAAGG+AGG | 0.716947 | 1.4:-60296997 | MS.gene63968:CDS |
| TTTGAAGAGCCATGTCATGG+AGG | 0.719459 | 1.4:-60296743 | MS.gene63968:CDS |
| TTCGCAAGAAGGCGTCAACG+CGG | 0.746882 | 1.4:-60296682 | MS.gene63968:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATAATGATAATAATGAA+GGG | - | chr1.4:60296804-60296823 | MS.gene63968:CDS | 15.0% |
| !!! | GATGATAATGATAATAATGA+AGG | - | chr1.4:60296803-60296822 | MS.gene63968:CDS | 20.0% |
| CCATTATTAGGCAACAAATT+TGG | + | chr1.4:60296953-60296972 | None:intergenic | 30.0% | |
| CTATCTCTTGTTACAAAGAT+GGG | + | chr1.4:60296398-60296417 | None:intergenic | 30.0% | |
| TTATTAGGCAACAAATTTGG+TGG | + | chr1.4:60296950-60296969 | None:intergenic | 30.0% | |
| ! | ATTTGTTGCCTAATAATGGA+GGG | - | chr1.4:60296954-60296973 | MS.gene63968:CDS | 30.0% |
| ! | TTTGGTGGCAAATTATACAA+AGG | + | chr1.4:60296935-60296954 | None:intergenic | 30.0% |
| !! | AATTTGTTGCCTAATAATGG+AGG | - | chr1.4:60296953-60296972 | MS.gene63968:CDS | 30.0% |
| !! | CCAAATTTGTTGCCTAATAA+TGG | - | chr1.4:60296950-60296969 | MS.gene63968:CDS | 30.0% |
| !! | CGTGATTTTCATTGATTGTT+AGG | + | chr1.4:60296262-60296281 | None:intergenic | 30.0% |
| !! | TTTGAGATTTTGTCCTTAAC+CGG | - | chr1.4:60296602-60296621 | MS.gene63968:CDS | 30.0% |
| AATGATAATAATGAAGGGCC+TGG | - | chr1.4:60296809-60296828 | MS.gene63968:CDS | 35.0% | |
| AGTAGCATTAGTAAACGTAG+CGG | + | chr1.4:60296759-60296778 | None:intergenic | 35.0% | |
| GCTATCTCTTGTTACAAAGA+TGG | + | chr1.4:60296399-60296418 | None:intergenic | 35.0% | |
| TCATTATCATCGTCATCAAG+TGG | + | chr1.4:60296794-60296813 | None:intergenic | 35.0% | |
| TGATTGTTAGGTTTGTGTTG+TGG | + | chr1.4:60296250-60296269 | None:intergenic | 35.0% | |
| TGGCAAATTATACAAAGGCA+TGG | + | chr1.4:60296930-60296949 | None:intergenic | 35.0% | |
| TGGTGTTTGTTTAAACCACT+TGG | + | chr1.4:60296230-60296249 | None:intergenic | 35.0% | |
| ! | TTATACAAAGGCATGGAAGA+AGG | + | chr1.4:60296923-60296942 | None:intergenic | 35.0% |
| ! | TTGAGATTTTGTCCTTAACC+GGG | - | chr1.4:60296603-60296622 | MS.gene63968:CDS | 35.0% |
| AACAGAGATGAACCTAGAGA+AGG | - | chr1.4:60296305-60296324 | MS.gene63968:CDS | 40.0% | |
| AATTCAAGGAGGGTTATCTG+GGG | - | chr1.4:60296184-60296203 | MS.gene63968:CDS | 40.0% | |
| ACAATTCAAGGAGGGTTATC+TGG | - | chr1.4:60296182-60296201 | MS.gene63968:CDS | 40.0% | |
| AGCTGATATAGCAGAAAGTG+TGG | - | chr1.4:60296460-60296479 | MS.gene63968:CDS | 40.0% | |
| CAATTCAAGGAGGGTTATCT+GGG | - | chr1.4:60296183-60296202 | MS.gene63968:CDS | 40.0% | |
| TCTCTTGTTACAAAGATGGG+TGG | + | chr1.4:60296395-60296414 | None:intergenic | 40.0% | |
| ! | AATCCTTGGTGGACAATTCA+AGG | - | chr1.4:60296170-60296189 | MS.gene63968:CDS | 40.0% |
| ! | ACATGGCTCTTCAAAGCATT+TGG | + | chr1.4:60296422-60296441 | None:intergenic | 40.0% |
| ! | CATGGCTCTTCAAAGCATTT+GGG | + | chr1.4:60296421-60296440 | None:intergenic | 40.0% |
| ! | GTTACAAAGATGGGTGGTTT+TGG | + | chr1.4:60296389-60296408 | None:intergenic | 40.0% |
| ! | GTTTAAACCACTTGGTGAGT+GGG | + | chr1.4:60296222-60296241 | None:intergenic | 40.0% |
| ! | TGTTTAAACCACTTGGTGAG+TGG | + | chr1.4:60296223-60296242 | None:intergenic | 40.0% |
| !! | AACTGGTCTTACAGTGTACT+TGG | - | chr1.4:60296658-60296677 | MS.gene63968:CDS | 40.0% |
| !!! | TTTGGTCTGTTTTTGGATCC+AGG | + | chr1.4:60296371-60296390 | None:intergenic | 40.0% |
| AACTGATGACCAATTCCTGG+TGG | + | chr1.4:60296881-60296900 | None:intergenic | 45.0% | |
| ACTGTAAGACCAGTTGAACC+TGG | + | chr1.4:60296653-60296672 | None:intergenic | 45.0% | |
| ACTTCAACTGCACCTTCTCT+AGG | + | chr1.4:60296320-60296339 | None:intergenic | 45.0% | |
| AGGAATTGGTCATCAGTTGC+AGG | - | chr1.4:60296883-60296902 | MS.gene63968:CDS | 45.0% | |
| AGGTAGAAAAGTCCCGGTTA+AGG | + | chr1.4:60296618-60296637 | None:intergenic | 45.0% | |
| CTGTTGTAGCACTTCATGGT+AGG | - | chr1.4:60296579-60296598 | MS.gene63968:CDS | 45.0% | |
| GGAATTGGTCATCAGTTGCA+GGG | - | chr1.4:60296884-60296903 | MS.gene63968:CDS | 45.0% | |
| GTAGTTGGAGGTTGTGTTGT+TGG | - | chr1.4:60296698-60296717 | MS.gene63968:CDS | 45.0% | |
| GTTGGAACTCTTGTTGCAGT+TGG | - | chr1.4:60296716-60296735 | MS.gene63968:CDS | 45.0% | |
| GTTTGTGTTCTCAGTGGAAG+TGG | - | chr1.4:60296512-60296531 | MS.gene63968:CDS | 45.0% | |
| TGCAACTGATGACCAATTCC+TGG | + | chr1.4:60296884-60296903 | None:intergenic | 45.0% | |
| TTCTGCTATATCAGCTCCAC+CGG | + | chr1.4:60296456-60296475 | None:intergenic | 45.0% | |
| TTTGAAGAGCCATGTCATGG+AGG | - | chr1.4:60296427-60296446 | MS.gene63968:CDS | 45.0% | |
| ! | AAAGGCATGGAAGAAGGATC+TGG | + | chr1.4:60296917-60296936 | None:intergenic | 45.0% |
| ! | AGAGAAGGTGCAGTTGAAGT+TGG | - | chr1.4:60296320-60296339 | MS.gene63968:CDS | 45.0% |
| ! | CCTAATAATGGAGGGCAGAT+GGG | - | chr1.4:60296962-60296981 | MS.gene63968:CDS | 45.0% |
| ! | CTTGGTGGACAATTCAAGGA+GGG | - | chr1.4:60296174-60296193 | MS.gene63968:CDS | 45.0% |
| ! | TTAACCGGGACTTTTCTACC+TGG | - | chr1.4:60296617-60296636 | MS.gene63968:CDS | 45.0% |
| !! | TGCTTTGAAGAGCCATGTCA+TGG | - | chr1.4:60296424-60296443 | MS.gene63968:CDS | 45.0% |
| !!! | GGGTGGTTTTGGTCTGTTTT+TGG | + | chr1.4:60296378-60296397 | None:intergenic | 45.0% |
| AGGACCAGGTAGAAAAGTCC+CGG | + | chr1.4:60296624-60296643 | None:intergenic | 50.0% | |
| ATTGGTCATCAGTTGCAGGG+TGG | - | chr1.4:60296887-60296906 | MS.gene63968:CDS | 50.0% | |
| CCCATCTGCCCTCCATTATT+AGG | + | chr1.4:60296965-60296984 | None:intergenic | 50.0% | |
| CCTCCTTGAATTGTCCACCA+AGG | + | chr1.4:60296176-60296195 | None:intergenic | 50.0% | |
| CTTACAGTGTACTTGGCTGG+AGG | - | chr1.4:60296665-60296684 | MS.gene63968:CDS | 50.0% | |
| CTTAGACAACCTTCAGCTCC+TGG | - | chr1.4:60296554-60296573 | MS.gene63968:CDS | 50.0% | |
| GGTCTTACAGTGTACTTGGC+TGG | - | chr1.4:60296662-60296681 | MS.gene63968:CDS | 50.0% | |
| GTAAGACCAGTTGAACCTGG+TGG | + | chr1.4:60296650-60296669 | None:intergenic | 50.0% | |
| GTGTGGCACAATTCGCAAGA+AGG | - | chr1.4:60296477-60296496 | MS.gene63968:CDS | 50.0% | |
| TGATGACCAATTCCTGGTGG+AGG | + | chr1.4:60296878-60296897 | None:intergenic | 50.0% | |
| TTGGTCATCAGTTGCAGGGT+GGG | - | chr1.4:60296888-60296907 | MS.gene63968:CDS | 50.0% | |
| ! | CAGTTCTGGCTAATCCTTGG+TGG | - | chr1.4:60296159-60296178 | MS.gene63968:CDS | 50.0% |
| ! | CCTTGGTGGACAATTCAAGG+AGG | - | chr1.4:60296173-60296192 | MS.gene63968:CDS | 50.0% |
| ! | GCCTAATAATGGAGGGCAGA+TGG | - | chr1.4:60296961-60296980 | MS.gene63968:CDS | 50.0% |
| ! | GTGGTCTTCCTCTTGGTCTT+CGG | + | chr1.4:60296349-60296368 | None:intergenic | 50.0% |
| ! | TGAAGTGCTACAACAGCACC+AGG | + | chr1.4:60296575-60296594 | None:intergenic | 50.0% |
| !! | GGTGCTGTTGTAGCACTTCA+TGG | - | chr1.4:60296575-60296594 | MS.gene63968:CDS | 50.0% |
| !! | GTTGGTAACCGAAGACCAAG+AGG | - | chr1.4:60296338-60296357 | MS.gene63968:CDS | 50.0% |
| !! | TAATGAAGGGCCTGGTTCTG+CGG | - | chr1.4:60296817-60296836 | MS.gene63968:CDS | 50.0% |
| !!! | GGTCTGTTTTTGGATCCAGG+TGG | + | chr1.4:60296368-60296387 | None:intergenic | 50.0% |
| ACAACAGCACCAGGAGCTGA+AGG | + | chr1.4:60296566-60296585 | None:intergenic | 55.0% | |
| AGACCAAGAGGAAGACCACC+TGG | - | chr1.4:60296350-60296369 | MS.gene63968:CDS | 55.0% | |
| AGCCATGTCATGGAGGTAGC+CGG | - | chr1.4:60296434-60296453 | MS.gene63968:CDS | 55.0% | |
| AGTGTACTTGGCTGGAGGTC+AGG | - | chr1.4:60296670-60296689 | MS.gene63968:CDS | 55.0% | |
| CGCGGTGTTTGTGTTCTCAG+TGG | - | chr1.4:60296506-60296525 | MS.gene63968:CDS | 55.0% | |
| GATCCAGGTGGTCTTCCTCT+TGG | + | chr1.4:60296356-60296375 | None:intergenic | 55.0% | |
| GTGTACTTGGCTGGAGGTCA+GGG | - | chr1.4:60296671-60296690 | MS.gene63968:CDS | 55.0% | |
| ! | CACTTGGTGAGTGGGTTCCT+GGG | + | chr1.4:60296214-60296233 | None:intergenic | 55.0% |
| !! | AATGAAGGGCCTGGTTCTGC+GGG | - | chr1.4:60296818-60296837 | MS.gene63968:CDS | 55.0% |
| !! | TTCGCAAGAAGGCGTCAACG+CGG | - | chr1.4:60296488-60296507 | MS.gene63968:CDS | 55.0% |
| CATGTCATGGAGGTAGCCGG+TGG | - | chr1.4:60296437-60296456 | MS.gene63968:CDS | 60.0% | |
| CCAGGAACCCACTCACCAAG+TGG | - | chr1.4:60296212-60296231 | MS.gene63968:CDS | 60.0% | |
| CCAGTTGAACCTGGTGGAGC+AGG | + | chr1.4:60296644-60296663 | None:intergenic | 60.0% | |
| CCTGCTCCACCAGGTTCAAC+TGG | - | chr1.4:60296641-60296660 | MS.gene63968:CDS | 60.0% | |
| GGAGGTCAGGGTCAGGTAGT+TGG | - | chr1.4:60296683-60296702 | MS.gene63968:CDS | 60.0% | |
| GGATCGCCTCCACCAGGAAT+TGG | - | chr1.4:60296869-60296888 | MS.gene63968:CDS | 60.0% | |
| GGGACATGAGGCTCTTGCCT+GGG | - | chr1.4:60296982-60297001 | MS.gene63968:CDS | 60.0% | |
| GGTCAGGGTCAGGTAGTTGG+AGG | - | chr1.4:60296686-60296705 | MS.gene63968:CDS | 60.0% | |
| TCTTCCATGAGCAGCAGCCC+AGG | + | chr1.4:60297002-60297021 | None:intergenic | 60.0% | |
| TGGAGGGCAGATGGGACATG+AGG | - | chr1.4:60296970-60296989 | MS.gene63968:CDS | 60.0% | |
| TGGGACATGAGGCTCTTGCC+TGG | - | chr1.4:60296981-60297000 | MS.gene63968:CDS | 60.0% | |
| ! | CACCGGCTACCTCCATGACA+TGG | + | chr1.4:60296439-60296458 | None:intergenic | 60.0% |
| ! | CCACTTGGTGAGTGGGTTCC+TGG | + | chr1.4:60296215-60296234 | None:intergenic | 60.0% |
| ! | GGGTTATCTGGGGTTGACCC+AGG | - | chr1.4:60296194-60296213 | MS.gene63968:CDS | 60.0% |
| CTACCTGGTCCTGCTCCACC+AGG | - | chr1.4:60296632-60296651 | MS.gene63968:CDS | 65.0% | |
| CTTGCCTGGGCTGCTGCTCA+TGG | - | chr1.4:60296995-60297014 | MS.gene63968:CDS | 65.0% | |
| CTTGGCTGGAGGTCAGGGTC+AGG | - | chr1.4:60296676-60296695 | MS.gene63968:CDS | 65.0% | |
| GAACCTGGTGGAGCAGGACC+AGG | + | chr1.4:60296638-60296657 | None:intergenic | 65.0% | |
| TGCACACCTCCCGCAGAACC+AGG | + | chr1.4:60296830-60296849 | None:intergenic | 65.0% | |
| ! | GGTTCTGCGGGAGGTGTGCA+AGG | - | chr1.4:60296830-60296849 | MS.gene63968:CDS | 65.0% |
| ! | TCTGCGGGAGGTGTGCAAGG+TGG | - | chr1.4:60296833-60296852 | MS.gene63968:CDS | 65.0% |
| ! | TCTGGTGGATCGCCTCCACC+AGG | - | chr1.4:60296863-60296882 | MS.gene63968:CDS | 65.0% |
| !! | CAAGGTGGAGGAGCGTCTGG+TGG | - | chr1.4:60296848-60296867 | MS.gene63968:CDS | 65.0% |
| !! | GTGCAAGGTGGAGGAGCGTC+TGG | - | chr1.4:60296845-60296864 | MS.gene63968:CDS | 65.0% |
| ! | GCGGGAGGTGTGCAAGGTGG+AGG | - | chr1.4:60296836-60296855 | MS.gene63968:CDS | 70.0% |
| !! | GAAGGGCCTGGTTCTGCGGG+AGG | - | chr1.4:60296821-60296840 | MS.gene63968:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 60296159 | 60297033 | 60296159 | ID=MS.gene63968 |
| chr1.4 | mRNA | 60296159 | 60297033 | 60296159 | ID=MS.gene63968.t1;Parent=MS.gene63968 |
| chr1.4 | exon | 60296159 | 60297033 | 60296159 | ID=MS.gene63968.t1.exon1;Parent=MS.gene63968.t1 |
| chr1.4 | CDS | 60296159 | 60297033 | 60296159 | ID=cds.MS.gene63968.t1;Parent=MS.gene63968.t1 |
| Gene Sequence |
| Protein sequence |
