Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64104.t1 | XP_003618715.1 | 52.1 | 482 | 68 | 8 | 1 | 319 | 1 | 482 | 2.40E-100 | 375.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64104.t1 | F4I2H7 | 32.1 | 109 | 62 | 1 | 203 | 299 | 623 | 731 | 1.3e-09 | 65.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64104.t1 | G7KMP3 | 52.1 | 482 | 68 | 8 | 1 | 319 | 1 | 482 | 1.7e-100 | 375.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050021 | MS.gene64104 | 0.80542 | 1.35E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene64104 | 0.805942 | 1.05E-49 | -1.69E-46 |
| MS.gene055357 | MS.gene64104 | 0.807327 | 5.34E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene64104 | 0.809241 | 2.09E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene64104 | -0.802902 | 4.50E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64104.t1 | MTR_6g015010 | 94.241 | 191 | 11 | 0 | 129 | 319 | 292 | 482 | 6.17e-126 | 369 |
| MS.gene64104.t1 | MTR_6g015010 | 59.341 | 91 | 12 | 1 | 1 | 66 | 1 | 91 | 1.91e-15 | 77.0 |
| MS.gene64104.t1 | MTR_7g013070 | 64.948 | 194 | 59 | 2 | 131 | 319 | 265 | 454 | 1.25e-81 | 254 |
| MS.gene64104.t1 | MTR_3g064800 | 47.863 | 117 | 59 | 1 | 203 | 319 | 49 | 163 | 8.02e-28 | 106 |
| MS.gene64104.t1 | MTR_3g064800 | 47.863 | 117 | 59 | 1 | 203 | 319 | 19 | 133 | 8.02e-28 | 105 |
| MS.gene64104.t1 | MTR_3g064800 | 47.863 | 117 | 59 | 1 | 203 | 319 | 31 | 145 | 1.28e-27 | 105 |
| MS.gene64104.t1 | MTR_4g078565 | 26.887 | 212 | 95 | 4 | 147 | 299 | 518 | 728 | 1.17e-13 | 72.0 |
| MS.gene64104.t1 | MTR_4g078565 | 26.887 | 212 | 95 | 4 | 147 | 299 | 511 | 721 | 1.22e-13 | 72.0 |
| MS.gene64104.t1 | MTR_4g094612 | 42.254 | 71 | 37 | 1 | 253 | 319 | 1 | 71 | 5.26e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64104.t1 | AT5G15510 | 51.974 | 304 | 99 | 4 | 62 | 319 | 186 | 488 | 5.98e-91 | 280 |
| MS.gene64104.t1 | AT3G01015 | 65.285 | 193 | 63 | 2 | 129 | 318 | 289 | 480 | 4.88e-82 | 257 |
| MS.gene64104.t1 | AT5G15510 | 51.301 | 269 | 84 | 5 | 62 | 284 | 186 | 453 | 6.83e-76 | 240 |
| MS.gene64104.t1 | AT5G15510 | 51.301 | 269 | 84 | 5 | 62 | 284 | 186 | 453 | 6.83e-76 | 240 |
| MS.gene64104.t1 | AT5G15510 | 75.000 | 156 | 38 | 1 | 129 | 284 | 299 | 453 | 6.91e-75 | 239 |
| MS.gene64104.t1 | AT5G37478 | 53.608 | 97 | 45 | 0 | 201 | 297 | 36 | 132 | 7.60e-28 | 106 |
| MS.gene64104.t1 | AT5G37478 | 53.608 | 97 | 45 | 0 | 201 | 297 | 56 | 152 | 1.41e-27 | 106 |
| MS.gene64104.t1 | AT5G37478 | 53.608 | 97 | 45 | 0 | 201 | 297 | 23 | 119 | 2.08e-27 | 104 |
| MS.gene64104.t1 | AT1G03780 | 26.667 | 210 | 95 | 4 | 149 | 299 | 522 | 731 | 1.56e-14 | 74.7 |
| MS.gene64104.t1 | AT1G03780 | 26.667 | 210 | 95 | 4 | 149 | 299 | 522 | 731 | 2.05e-14 | 74.3 |
| MS.gene64104.t1 | AT5G44270 | 33.721 | 86 | 57 | 0 | 214 | 299 | 207 | 292 | 3.35e-11 | 63.5 |
Find 64 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTATCTGAAGTTGTTTC+TGG | 0.155037 | 5.1:-50318043 | MS.gene64104:CDS |
| TAAGGCATTGGCTGCGCTTT+AGG | 0.259331 | 5.1:+50315968 | None:intergenic |
| TTTCGATTAGAAAACTCATT+AGG | 0.285358 | 5.1:+50318420 | None:intergenic |
| ATGTGAAACTTTGGTTCTTT+TGG | 0.287997 | 5.1:+50315559 | None:intergenic |
| TAAAGCACTTGATCTTCTTA+TGG | 0.309995 | 5.1:+50315530 | None:intergenic |
| ATGAATGGTCTGTCAAAATA+AGG | 0.316056 | 5.1:+50315950 | None:intergenic |
| GGGTTACAGTTACATCTTCT+TGG | 0.323864 | 5.1:-50318009 | MS.gene64104:CDS |
| AGGAATGGTGTACCTGAAAA+TGG | 0.330943 | 5.1:-50318196 | MS.gene64104:CDS |
| TTCGATTAGAAAACTCATTA+GGG | 0.343147 | 5.1:+50318421 | None:intergenic |
| CATGGAAGACCTTGTGCAAT+AGG | 0.364761 | 5.1:+50317238 | None:intergenic |
| CTATGAAGCTTCACATCAAT+AGG | 0.379023 | 5.1:+50316374 | None:intergenic |
| GTGTGTAGCAGGAACTCTTC+TGG | 0.394499 | 5.1:-50317828 | MS.gene64104:CDS |
| ATCTGAAGTTGTTTCTGGAT+TGG | 0.396998 | 5.1:-50318038 | MS.gene64104:CDS |
| TTGGAATCATCTAGTACTAT+TGG | 0.398723 | 5.1:-50317506 | MS.gene64104:CDS |
| AGAACAACAGAAAAGGGAAT+TGG | 0.400583 | 5.1:-50316206 | MS.gene64104:CDS |
| GGTTACAGTTACATCTTCTT+GGG | 0.415618 | 5.1:-50318008 | MS.gene64104:CDS |
| CATTACCTCGTTGGAATGAA+TGG | 0.424164 | 5.1:+50315935 | None:intergenic |
| TCTTCTTGGGATTGTGGAAG+TGG | 0.435767 | 5.1:-50317995 | MS.gene64104:CDS |
| TCGCGCGGAATTTGATCATC+AGG | 0.446879 | 5.1:-50316333 | MS.gene64104:intron |
| ACCTCAGTCCTTAGCTTGAA+AGG | 0.454283 | 5.1:+50317434 | None:intergenic |
| AGGAAGAGATTAGGAAATTG+AGG | 0.454828 | 5.1:-50316003 | MS.gene64104:CDS |
| GGGATTGTGGAAGTGGAAGA+AGG | 0.460575 | 5.1:-50317988 | MS.gene64104:intron |
| TGGCTGAAGAGGAAGAGATT+AGG | 0.463010 | 5.1:-50316012 | MS.gene64104:CDS |
| GGAATTGGAAATACAACAAA+AGG | 0.463028 | 5.1:-50316191 | MS.gene64104:intron |
| TTGTTTCTGGATTGGATCAA+AGG | 0.473482 | 5.1:-50318030 | MS.gene64104:CDS |
| TTTGATAGAACAACAGAAAA+GGG | 0.474688 | 5.1:-50316212 | MS.gene64104:CDS |
| GTTTGATAGAACAACAGAAA+AGG | 0.481566 | 5.1:-50316213 | MS.gene64104:CDS |
| TCCCTTACAGTTGGCTGAAG+AGG | 0.485828 | 5.1:-50316023 | MS.gene64104:intron |
| GTTACATCTTCTTGGGATTG+TGG | 0.489323 | 5.1:-50318001 | MS.gene64104:CDS |
| GAAGCTTCATAGTGATTTGA+GGG | 0.498697 | 5.1:-50316363 | MS.gene64104:CDS |
| GTTCAAATTCTCAATTTCCA+AGG | 0.500670 | 5.1:+50318443 | None:intergenic |
| GTACTATTGGAGGAAGGAGG+TGG | 0.500694 | 5.1:-50317493 | MS.gene64104:CDS |
| TGTTTCTGGATTGGATCAAA+GGG | 0.501809 | 5.1:-50318029 | MS.gene64104:CDS |
| AGAAGAACAGTTGATGAAGA+AGG | 0.503039 | 5.1:-50317299 | MS.gene64104:CDS |
| TGAAGCTTCATAGTGATTTG+AGG | 0.503817 | 5.1:-50316364 | MS.gene64104:CDS |
| TTCAAATTCTCAATTTCCAA+GGG | 0.511479 | 5.1:+50318444 | None:intergenic |
| AAATGGTAAAGTAATGCATT+TGG | 0.516438 | 5.1:-50318179 | MS.gene64104:CDS |
| TTGATCAATCATTACCTCGT+TGG | 0.518913 | 5.1:+50315926 | None:intergenic |
| CTCTGACGAATTCTCTTCTG+CGG | 0.520745 | 5.1:+50318336 | None:intergenic |
| CTATTGCACAAGGTCTTCCA+TGG | 0.526302 | 5.1:-50317237 | MS.gene64104:CDS |
| ATCAGAGAAGAAGAAACCCT+TGG | 0.527897 | 5.1:-50318460 | MS.gene64104:CDS |
| GTCAGAAACCTTTCAAGCTA+AGG | 0.529285 | 5.1:-50317442 | MS.gene64104:CDS |
| TGGTGAGGTATGTGAAACTT+TGG | 0.533377 | 5.1:+50315550 | None:intergenic |
| TAAAGTAATGCATTTGGTGA+AGG | 0.534433 | 5.1:-50318173 | MS.gene64104:CDS |
| AGAGATTAGGAAATTGAGGA+AGG | 0.551486 | 5.1:-50315999 | MS.gene64104:CDS |
| TTATTCGATGATTTCTGAAG+TGG | 0.555085 | 5.1:+50318396 | None:intergenic |
| TATTCGATGATTTCTGAAGT+GGG | 0.560596 | 5.1:+50318397 | None:intergenic |
| CACTTGATCTTCTTATGGTG+AGG | 0.566706 | 5.1:+50315535 | None:intergenic |
| TTTGTGCTTTCTTTCACAGG+AGG | 0.566913 | 5.1:+50316398 | None:intergenic |
| GAATCATCTAGTACTATTGG+AGG | 0.568710 | 5.1:-50317503 | MS.gene64104:CDS |
| TAAGTGTGTTTGCGAAGCAA+TGG | 0.571703 | 5.1:-50318227 | MS.gene64104:CDS |
| TCAGGTTCATCAATAGTCCA+TGG | 0.571822 | 5.1:+50317220 | None:intergenic |
| GGTCTGTCAAAATAAGGCAT+TGG | 0.582294 | 5.1:+50315956 | None:intergenic |
| CATCTAGTACTATTGGAGGA+AGG | 0.619078 | 5.1:-50317499 | MS.gene64104:CDS |
| GCAATGGAAGAAACAAGGAA+TGG | 0.646394 | 5.1:-50318211 | MS.gene64104:CDS |
| GCGAAGCAATGGAAGAAACA+AGG | 0.647299 | 5.1:-50318216 | MS.gene64104:CDS |
| CTAGTACTATTGGAGGAAGG+AGG | 0.649542 | 5.1:-50317496 | MS.gene64104:CDS |
| TTTGAGGGCAATTGATCGCG+CGG | 0.653049 | 5.1:-50316348 | MS.gene64104:CDS |
| ATGGACTATTGATGAACCTG+AGG | 0.663121 | 5.1:-50317218 | MS.gene64104:intron |
| TGTAGCAGGAACTCTTCTGG+TGG | 0.669446 | 5.1:-50317825 | MS.gene64104:CDS |
| ACCTTTCAAGCTAAGGACTG+AGG | 0.672965 | 5.1:-50317435 | MS.gene64104:intron |
| ATGAGAGTACCTATTGCACA+AGG | 0.699289 | 5.1:-50317247 | MS.gene64104:CDS |
| ATAATGCTATTGTAGCAAAG+GGG | 0.728973 | 5.1:-50317331 | MS.gene64104:intron |
| ACAGACCATTCATTCCAACG+AGG | 0.804126 | 5.1:-50315940 | MS.gene64104:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATTACATTTATACT+TGG | + | chr5.1:50316853-50316872 | None:intergenic | 10.0% |
| !! | AGTTTAAAAATTCTTTACAT+TGG | - | chr5.1:50317110-50317129 | MS.gene64104:intron | 15.0% |
| !!! | TAATTGATGATACAAATAAT+TGG | - | chr5.1:50316545-50316564 | MS.gene64104:intron | 15.0% |
| !!! | TTATTTATATTTTGGTTTGA+AGG | - | chr5.1:50318354-50318373 | MS.gene64104:CDS | 15.0% |
| !!! | TTGTCTCATTATTTATATTT+TGG | - | chr5.1:50318346-50318365 | MS.gene64104:CDS | 15.0% |
| !! | AAAACTTTCTGTTTATTTGA+TGG | - | chr5.1:50317072-50317091 | MS.gene64104:intron | 20.0% |
| !! | ACAATAATACTAATGAAGAT+TGG | - | chr5.1:50316365-50316384 | MS.gene64104:CDS | 20.0% |
| !! | CAAATTTATCATAATTCTGT+TGG | - | chr5.1:50317478-50317497 | MS.gene64104:CDS | 20.0% |
| !! | TCATAATGTGTAAAACTAAA+GGG | + | chr5.1:50317676-50317695 | None:intergenic | 20.0% |
| !! | TTAAAAATTCTTTACATTGG+CGG | - | chr5.1:50317113-50317132 | MS.gene64104:intron | 20.0% |
| !! | TTCATAATGTGTAAAACTAA+AGG | + | chr5.1:50317677-50317696 | None:intergenic | 20.0% |
| !!! | ATTTTAGATAAAGGAAAACA+TGG | + | chr5.1:50317896-50317915 | None:intergenic | 20.0% |
| !!! | GTAATTTTTTAATCAAGCAT+AGG | - | chr5.1:50316862-50316881 | MS.gene64104:intron | 20.0% |
| !!! | TCATTTTTGCAAAATGTTAT+CGG | - | chr5.1:50316304-50316323 | MS.gene64104:intron | 20.0% |
| ! | AAATGGTAAAGTAATGCATT+TGG | - | chr5.1:50315778-50315797 | MS.gene64104:intron | 25.0% |
| ! | AGAGGTTACTTAGTATAAAA+AGG | - | chr5.1:50315813-50315832 | MS.gene64104:intron | 25.0% |
| ! | ATACACACTTTAATTGATCT+CGG | + | chr5.1:50318275-50318294 | None:intergenic | 25.0% |
| ! | ATAGCAATTCTCAATTAGAA+CGG | - | chr5.1:50317252-50317271 | MS.gene64104:CDS | 25.0% |
| ! | ATGCTAGGATATTAGATATA+AGG | + | chr5.1:50317218-50317237 | None:intergenic | 25.0% |
| ! | CATAATGTGTAAAACTAAAG+GGG | + | chr5.1:50317675-50317694 | None:intergenic | 25.0% |
| ! | GAAAATTTAAATTGAACCAC+CGG | + | chr5.1:50316967-50316986 | None:intergenic | 25.0% |
| ! | GACAAAAAGAGACAAAATAA+TGG | + | chr5.1:50318331-50318350 | None:intergenic | 25.0% |
| ! | GAGGTTACTTAGTATAAAAA+GGG | - | chr5.1:50315814-50315833 | MS.gene64104:intron | 25.0% |
| ! | TATAATGCTATTGTAGCAAA+GGG | - | chr5.1:50316625-50316644 | MS.gene64104:intron | 25.0% |
| ! | TTAGCGATTCACTATTAATA+AGG | - | chr5.1:50316388-50316407 | MS.gene64104:CDS | 25.0% |
| ! | TTCAAATTCTCAATTTCCAA+GGG | + | chr5.1:50315516-50315535 | None:intergenic | 25.0% |
| ! | TTCGATTAGAAAACTCATTA+GGG | + | chr5.1:50315539-50315558 | None:intergenic | 25.0% |
| ! | TTTCGATTAGAAAACTCATT+AGG | + | chr5.1:50315540-50315559 | None:intergenic | 25.0% |
| ! | TTTGATAGAACAACAGAAAA+GGG | - | chr5.1:50317745-50317764 | MS.gene64104:intron | 25.0% |
| !! | ATTTTGCACTGTTATGAATT+CGG | - | chr5.1:50318303-50318322 | MS.gene64104:intron | 25.0% |
| !! | TGACATATCATTTTGTGATT+CGG | - | chr5.1:50318113-50318132 | MS.gene64104:intron | 25.0% |
| !! | TTTATCTAAAATGTTGACGT+CGG | - | chr5.1:50317904-50317923 | MS.gene64104:intron | 25.0% |
| !!! | AAATTTTTCAGTGGCTATAT+TGG | - | chr5.1:50316590-50316609 | MS.gene64104:intron | 25.0% |
| !!! | AGTTTCTTCAAATTTTTCAG+TGG | - | chr5.1:50316581-50316600 | MS.gene64104:intron | 25.0% |
| !!! | GTCATTGATTTGAAATCAAT+TGG | + | chr5.1:50318253-50318272 | None:intergenic | 25.0% |
| !!! | TTTAAAGTTGATTTGACGAA+AGG | - | chr5.1:50318216-50318235 | MS.gene64104:CDS | 25.0% |
| AATTCAGTTTCAGTGGAATT+AGG | - | chr5.1:50317393-50317412 | MS.gene64104:intron | 30.0% | |
| ACATGTGATGTAATGAACAT+TGG | - | chr5.1:50316275-50316294 | MS.gene64104:intron | 30.0% | |
| AGAGAATGAGAAGAAGAATA+AGG | - | chr5.1:50315862-50315881 | MS.gene64104:intron | 30.0% | |
| AGCATATACACTTCAAACTA+AGG | + | chr5.1:50316788-50316807 | None:intergenic | 30.0% | |
| ATAATGCTATTGTAGCAAAG+GGG | - | chr5.1:50316626-50316645 | MS.gene64104:intron | 30.0% | |
| ATGAATGGTCTGTCAAAATA+AGG | + | chr5.1:50318010-50318029 | None:intergenic | 30.0% | |
| CTATAATGCTATTGTAGCAA+AGG | - | chr5.1:50316624-50316643 | MS.gene64104:intron | 30.0% | |
| GAATTAAATCTGTGAGTAGT+TGG | - | chr5.1:50317143-50317162 | MS.gene64104:intron | 30.0% | |
| GGAATTGGAAATACAACAAA+AGG | - | chr5.1:50317766-50317785 | MS.gene64104:intron | 30.0% | |
| GTTCAAATTCTCAATTTCCA+AGG | + | chr5.1:50315517-50315536 | None:intergenic | 30.0% | |
| GTTTGATAGAACAACAGAAA+AGG | - | chr5.1:50317744-50317763 | MS.gene64104:intron | 30.0% | |
| TAACAACTCACAGTCAAATT+TGG | - | chr5.1:50316811-50316830 | MS.gene64104:intron | 30.0% | |
| TCATTCGATCTCAAAATCAA+TGG | - | chr5.1:50318184-50318203 | MS.gene64104:CDS | 30.0% | |
| TCTAATATCCTAGCATAACA+TGG | - | chr5.1:50317222-50317241 | MS.gene64104:CDS | 30.0% | |
| TGATCAAAGTCCTAAGAAAA+CGG | - | chr5.1:50315674-50315693 | MS.gene64104:intron | 30.0% | |
| TGTACTAAATTCAGTTTCAG+TGG | - | chr5.1:50317386-50317405 | MS.gene64104:intron | 30.0% | |
| TTGGAATCATCTAGTACTAT+TGG | - | chr5.1:50316451-50316470 | MS.gene64104:intron | 30.0% | |
| ! | GACGTCAACATTTTAGATAA+AGG | + | chr5.1:50317905-50317924 | None:intergenic | 30.0% |
| ! | TAAAGCACTTGATCTTCTTA+TGG | + | chr5.1:50318430-50318449 | None:intergenic | 30.0% |
| ! | TAAAGTAATGCATTTGGTGA+AGG | - | chr5.1:50315784-50315803 | MS.gene64104:intron | 30.0% |
| ! | TGCATTACTTTACCATTTTC+AGG | + | chr5.1:50315776-50315795 | None:intergenic | 30.0% |
| ! | TTATTCGATGATTTCTGAAG+TGG | + | chr5.1:50315564-50315583 | None:intergenic | 30.0% |
| ! | TTGATTTGAGATGTGAAAGT+TGG | + | chr5.1:50317803-50317822 | None:intergenic | 30.0% |
| ! | TTTAAATTTTCACGCACTGT+CGG | - | chr5.1:50316976-50316995 | MS.gene64104:intron | 30.0% |
| ! | TTTCACAAAACCGTTTTCTT+AGG | + | chr5.1:50315687-50315706 | None:intergenic | 30.0% |
| !! | TATTCGATGATTTCTGAAGT+GGG | + | chr5.1:50315563-50315582 | None:intergenic | 30.0% |
| !!! | ATGTGAAACTTTGGTTCTTT+TGG | + | chr5.1:50318401-50318420 | None:intergenic | 30.0% |
| !!! | TTTCTGTGTTTTTTAGAGCT+TGG | - | chr5.1:50316432-50316451 | MS.gene64104:intron | 30.0% |
| !!! | TTTGGTTCTTTTGGTATAGT+TGG | + | chr5.1:50318392-50318411 | None:intergenic | 30.0% |
| AAATGTGGAGAGAATAGTGA+TGG | - | chr5.1:50315704-50315723 | MS.gene64104:intron | 35.0% | |
| AATTCGTCAGAGAAAGTTTG+TGG | - | chr5.1:50315632-50315651 | MS.gene64104:intron | 35.0% | |
| AGAACAACAGAAAAGGGAAT+TGG | - | chr5.1:50317751-50317770 | MS.gene64104:intron | 35.0% | |
| AGACTCAAGAGGATGTTTAT+TGG | + | chr5.1:50317346-50317365 | None:intergenic | 35.0% | |
| AGAGATTAGGAAATTGAGGA+AGG | - | chr5.1:50317958-50317977 | MS.gene64104:intron | 35.0% | |
| AGGAAGAGATTAGGAAATTG+AGG | - | chr5.1:50317954-50317973 | MS.gene64104:intron | 35.0% | |
| AGTACATATCAGCTGACATA+TGG | + | chr5.1:50317372-50317391 | None:intergenic | 35.0% | |
| AGTTCATCTTCATCCTTAAC+AGG | + | chr5.1:50315899-50315918 | None:intergenic | 35.0% | |
| ATCGCAATTGCATTACATGA+TGG | + | chr5.1:50316932-50316951 | None:intergenic | 35.0% | |
| ATTTGTGAATAAGGCATGTC+CGG | - | chr5.1:50316239-50316258 | MS.gene64104:intron | 35.0% | |
| CAGAAGAATGCTTAGACAAA+TGG | + | chr5.1:50317521-50317540 | None:intergenic | 35.0% | |
| CTATGAAGCTTCACATCAAT+AGG | + | chr5.1:50317586-50317605 | None:intergenic | 35.0% | |
| GAAGCTTCATAGTGATTTGA+GGG | - | chr5.1:50317594-50317613 | MS.gene64104:intron | 35.0% | |
| GAATCATCTAGTACTATTGG+AGG | - | chr5.1:50316454-50316473 | MS.gene64104:intron | 35.0% | |
| GATGTGAAAGTTGGAAAACA+TGG | + | chr5.1:50317844-50317863 | None:intergenic | 35.0% | |
| GGTATATATTCCCTTACAGT+TGG | - | chr5.1:50317925-50317944 | MS.gene64104:intron | 35.0% | |
| GGTTACAGTTACATCTTCTT+GGG | - | chr5.1:50315949-50315968 | MS.gene64104:CDS | 35.0% | |
| TAACGCAGCAACATCATTAA+GGG | + | chr5.1:50317319-50317338 | None:intergenic | 35.0% | |
| TCAATTAGAACGGTACATTG+TGG | - | chr5.1:50317262-50317281 | MS.gene64104:CDS | 35.0% | |
| TCGCAATTGCATTACATGAT+GGG | + | chr5.1:50316931-50316950 | None:intergenic | 35.0% | |
| TGAAGCTTCATAGTGATTTG+AGG | - | chr5.1:50317593-50317612 | MS.gene64104:intron | 35.0% | |
| TGATGAATGCTTAACTGTGT+AGG | - | chr5.1:50317706-50317725 | MS.gene64104:intron | 35.0% | |
| TTAACGCAGCAACATCATTA+AGG | + | chr5.1:50317320-50317339 | None:intergenic | 35.0% | |
| TTGATCAATCATTACCTCGT+TGG | + | chr5.1:50318034-50318053 | None:intergenic | 35.0% | |
| TTGCGATTATAGCTTATGTC+CGG | - | chr5.1:50316945-50316964 | MS.gene64104:intron | 35.0% | |
| ! | ACAAACACAGAAAGTACATG+AGG | + | chr5.1:50317439-50317458 | None:intergenic | 35.0% |
| ! | CATGCCTTATTCACAAATGT+CGG | + | chr5.1:50316237-50316256 | None:intergenic | 35.0% |
| ! | CTGATTTGAGATGTGAAAGT+TGG | + | chr5.1:50317853-50317872 | None:intergenic | 35.0% |
| ! | GAACTATCTGAAGTTGTTTC+TGG | - | chr5.1:50315914-50315933 | MS.gene64104:intron | 35.0% |
| ! | TTAAATTTTCACGCACTGTC+GGG | - | chr5.1:50316977-50316996 | MS.gene64104:intron | 35.0% |
| !! | AGAAGAACAGTTGATGAAGA+AGG | - | chr5.1:50316658-50316677 | MS.gene64104:intron | 35.0% |
| !! | ATCTGAAGTTGTTTCTGGAT+TGG | - | chr5.1:50315919-50315938 | MS.gene64104:intron | 35.0% |
| !! | ATGAGGTATTGTGAGCAAAA+AGG | + | chr5.1:50317422-50317441 | None:intergenic | 35.0% |
| !! | ATTTGGTGAAGGATTTTGAG+AGG | - | chr5.1:50315795-50315814 | MS.gene64104:intron | 35.0% |
| !! | GAAAACGGTTTTGTGAAATG+TGG | - | chr5.1:50315689-50315708 | MS.gene64104:intron | 35.0% |
| !! | GATGTGAAAGTTGGTAAACA+TGG | + | chr5.1:50317794-50317813 | None:intergenic | 35.0% |
| !! | TGTTTCTGGATTGGATCAAA+GGG | - | chr5.1:50315928-50315947 | MS.gene64104:intron | 35.0% |
| !! | TTGTTTCTGGATTGGATCAA+AGG | - | chr5.1:50315927-50315946 | MS.gene64104:intron | 35.0% |
| AAGGGAGAAAGAGAAGAATG+AGG | - | chr5.1:50315832-50315851 | MS.gene64104:intron | 40.0% | |
| ACATATGGTCAAGACTCAAG+AGG | + | chr5.1:50317357-50317376 | None:intergenic | 40.0% | |
| AGGAATGGTGTACCTGAAAA+TGG | - | chr5.1:50315761-50315780 | MS.gene64104:intron | 40.0% | |
| ATCAGAGAAGAAGAAACCCT+TGG | - | chr5.1:50315497-50315516 | MS.gene64104:CDS | 40.0% | |
| CACTTGATCTTCTTATGGTG+AGG | + | chr5.1:50318425-50318444 | None:intergenic | 40.0% | |
| CATCTAGTACTATTGGAGGA+AGG | - | chr5.1:50316458-50316477 | MS.gene64104:intron | 40.0% | |
| CATGACACAGTTATCCATCT+TGG | - | chr5.1:50318161-50318180 | MS.gene64104:intron | 40.0% | |
| CATTACCTCGTTGGAATGAA+TGG | + | chr5.1:50318025-50318044 | None:intergenic | 40.0% | |
| CCTTATTCACAAATGTCGGT+CGG | + | chr5.1:50316233-50316252 | None:intergenic | 40.0% | |
| CTATTGATGAACCTGAGGTA+AGG | - | chr5.1:50316744-50316763 | MS.gene64104:intron | 40.0% | |
| CTTGTGTCAATTGTTGTGTG+TGG | - | chr5.1:50316084-50316103 | MS.gene64104:intron | 40.0% | |
| GAAAGAGAAGAATGAGGATG+AGG | - | chr5.1:50315838-50315857 | MS.gene64104:intron | 40.0% | |
| GCAATGGAAGAAACAAGGAA+TGG | - | chr5.1:50315746-50315765 | MS.gene64104:intron | 40.0% | |
| GGGTTACAGTTACATCTTCT+TGG | - | chr5.1:50315948-50315967 | MS.gene64104:CDS | 40.0% | |
| GGTCTGTCAAAATAAGGCAT+TGG | + | chr5.1:50318004-50318023 | None:intergenic | 40.0% | |
| GGTGATGAAACAACCTGTTA+AGG | - | chr5.1:50315883-50315902 | MS.gene64104:intron | 40.0% | |
| GTCAGAAACCTTTCAAGCTA+AGG | - | chr5.1:50316515-50316534 | MS.gene64104:intron | 40.0% | |
| GTGTTAGTGTTTGTGACATG+CGG | - | chr5.1:50316340-50316359 | MS.gene64104:CDS | 40.0% | |
| GTTACATCTTCTTGGGATTG+TGG | - | chr5.1:50315956-50315975 | MS.gene64104:CDS | 40.0% | |
| TAAGTGTGTTTGCGAAGCAA+TGG | - | chr5.1:50315730-50315749 | MS.gene64104:intron | 40.0% | |
| TATCCTAGCATAACATGGCA+AGG | - | chr5.1:50317227-50317246 | MS.gene64104:CDS | 40.0% | |
| TCAGGTTCATCAATAGTCCA+TGG | + | chr5.1:50316740-50316759 | None:intergenic | 40.0% | |
| TGAATGCTTAACTGTGTAGG+TGG | - | chr5.1:50317709-50317728 | MS.gene64104:intron | 40.0% | |
| TGGTGAGGTATGTGAAACTT+TGG | + | chr5.1:50318410-50318429 | None:intergenic | 40.0% | |
| TTACATCACATGTGTCGTGT+TGG | + | chr5.1:50316268-50316287 | None:intergenic | 40.0% | |
| TTGAGATCGAATGACCAAGA+TGG | + | chr5.1:50318178-50318197 | None:intergenic | 40.0% | |
| TTTGTGCTTTCTTTCACAGG+AGG | + | chr5.1:50317562-50317581 | None:intergenic | 40.0% | |
| ! | ATGGACTATTGATGAACCTG+AGG | - | chr5.1:50316739-50316758 | MS.gene64104:intron | 40.0% |
| ! | GCTAATGGACAAGCATTAGT+AGG | + | chr5.1:50316898-50316917 | None:intergenic | 40.0% |
| ! | TAAATTTTCACGCACTGTCG+GGG | - | chr5.1:50316978-50316997 | MS.gene64104:intron | 40.0% |
| !! | ATGAGAGTACCTATTGCACA+AGG | - | chr5.1:50316710-50316729 | MS.gene64104:intron | 40.0% |
| !! | GGTTTTGTGCTTTCTTTCAC+AGG | + | chr5.1:50317565-50317584 | None:intergenic | 40.0% |
| ACAGACCATTCATTCCAACG+AGG | - | chr5.1:50318017-50318036 | MS.gene64104:CDS | 45.0% | |
| ACCTTTCAAGCTAAGGACTG+AGG | - | chr5.1:50316522-50316541 | MS.gene64104:intron | 45.0% | |
| CATGGAAGACCTTGTGCAAT+AGG | + | chr5.1:50316722-50316741 | None:intergenic | 45.0% | |
| CCGACCGACATTTGTGAATA+AGG | - | chr5.1:50316230-50316249 | MS.gene64104:CDS | 45.0% | |
| CGATTATAGCTTATGTCCGG+TGG | - | chr5.1:50316948-50316967 | MS.gene64104:intron | 45.0% | |
| CTAGTACTATTGGAGGAAGG+AGG | - | chr5.1:50316461-50316480 | MS.gene64104:intron | 45.0% | |
| CTATTGCACAAGGTCTTCCA+TGG | - | chr5.1:50316720-50316739 | MS.gene64104:intron | 45.0% | |
| CTCTGACGAATTCTCTTCTG+CGG | + | chr5.1:50315624-50315643 | None:intergenic | 45.0% | |
| GCGAAGCAATGGAAGAAACA+AGG | - | chr5.1:50315741-50315760 | MS.gene64104:intron | 45.0% | |
| TCCTCTTCAGCCAACTGTAA+GGG | + | chr5.1:50317938-50317957 | None:intergenic | 45.0% | |
| TCTCCTTGCCATGTTATGCT+AGG | + | chr5.1:50317233-50317252 | None:intergenic | 45.0% | |
| TCTTCTTGGGATTGTGGAAG+TGG | - | chr5.1:50315962-50315981 | MS.gene64104:CDS | 45.0% | |
| TGAGAAATCGACCTTACCTC+AGG | + | chr5.1:50316758-50316777 | None:intergenic | 45.0% | |
| TGGCTGAAGAGGAAGAGATT+AGG | - | chr5.1:50317945-50317964 | MS.gene64104:intron | 45.0% | |
| TTCCTCTTCAGCCAACTGTA+AGG | + | chr5.1:50317939-50317958 | None:intergenic | 45.0% | |
| ! | ACCTCAGTCCTTAGCTTGAA+AGG | + | chr5.1:50316526-50316545 | None:intergenic | 45.0% |
| ! | TTACATGATGGGACAGTCAG+AGG | + | chr5.1:50316920-50316939 | None:intergenic | 45.0% |
| ! | TTTTGTGCAGTGTGTGTAGC+AGG | - | chr5.1:50316118-50316137 | MS.gene64104:intron | 45.0% |
| !! | TGGCTATATTGGTGATGCAC+TGG | - | chr5.1:50316601-50316620 | MS.gene64104:intron | 45.0% |
| ACATGTGTCGTGTTGGACAC+CGG | + | chr5.1:50316261-50316280 | None:intergenic | 50.0% | |
| ATGGGACAGTCAGAGGCTAA+TGG | + | chr5.1:50316913-50316932 | None:intergenic | 50.0% | |
| GGGATTGTGGAAGTGGAAGA+AGG | - | chr5.1:50315969-50315988 | MS.gene64104:CDS | 50.0% | |
| GTACTATTGGAGGAAGGAGG+TGG | - | chr5.1:50316464-50316483 | MS.gene64104:intron | 50.0% | |
| GTGTGTAGCAGGAACTCTTC+TGG | - | chr5.1:50316129-50316148 | MS.gene64104:intron | 50.0% | |
| TCCCTTACAGTTGGCTGAAG+AGG | - | chr5.1:50317934-50317953 | MS.gene64104:intron | 50.0% | |
| TCGCGCGGAATTTGATCATC+AGG | - | chr5.1:50317624-50317643 | MS.gene64104:intron | 50.0% | |
| TGTAGCAGGAACTCTTCTGG+TGG | - | chr5.1:50316132-50316151 | MS.gene64104:intron | 50.0% | |
| TTTGAGGGCAATTGATCGCG+CGG | - | chr5.1:50317609-50317628 | MS.gene64104:intron | 50.0% | |
| !! | TAAGGCATTGGCTGCGCTTT+AGG | + | chr5.1:50317992-50318011 | None:intergenic | 50.0% |
| GTCGGTCGGTACTATAGAGC+TGG | + | chr5.1:50316219-50316238 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 50315492 | 50318487 | 50315492 | ID=MS.gene64104 |
| chr5.1 | mRNA | 50315492 | 50318487 | 50315492 | ID=MS.gene64104.t1;Parent=MS.gene64104 |
| chr5.1 | exon | 50318333 | 50318487 | 50318333 | ID=MS.gene64104.t1.exon1;Parent=MS.gene64104.t1 |
| chr5.1 | CDS | 50318333 | 50318487 | 50318333 | ID=cds.MS.gene64104.t1;Parent=MS.gene64104.t1 |
| chr5.1 | exon | 50318163 | 50318258 | 50318163 | ID=MS.gene64104.t1.exon2;Parent=MS.gene64104.t1 |
| chr5.1 | CDS | 50318163 | 50318258 | 50318163 | ID=cds.MS.gene64104.t1;Parent=MS.gene64104.t1 |
| chr5.1 | exon | 50317989 | 50318074 | 50317989 | ID=MS.gene64104.t1.exon3;Parent=MS.gene64104.t1 |
| chr5.1 | CDS | 50317989 | 50318074 | 50317989 | ID=cds.MS.gene64104.t1;Parent=MS.gene64104.t1 |
| chr5.1 | exon | 50317806 | 50317851 | 50317806 | ID=MS.gene64104.t1.exon4;Parent=MS.gene64104.t1 |
| chr5.1 | CDS | 50317806 | 50317851 | 50317806 | ID=cds.MS.gene64104.t1;Parent=MS.gene64104.t1 |
| chr5.1 | exon | 50317436 | 50317529 | 50317436 | ID=MS.gene64104.t1.exon5;Parent=MS.gene64104.t1 |
| chr5.1 | CDS | 50317436 | 50317529 | 50317436 | ID=cds.MS.gene64104.t1;Parent=MS.gene64104.t1 |
| chr5.1 | exon | 50317219 | 50317338 | 50317219 | ID=MS.gene64104.t1.exon6;Parent=MS.gene64104.t1 |
| chr5.1 | CDS | 50317219 | 50317338 | 50317219 | ID=cds.MS.gene64104.t1;Parent=MS.gene64104.t1 |
| chr5.1 | exon | 50316334 | 50316432 | 50316334 | ID=MS.gene64104.t1.exon7;Parent=MS.gene64104.t1 |
| chr5.1 | CDS | 50316334 | 50316432 | 50316334 | ID=cds.MS.gene64104.t1;Parent=MS.gene64104.t1 |
| chr5.1 | exon | 50316192 | 50316251 | 50316192 | ID=MS.gene64104.t1.exon8;Parent=MS.gene64104.t1 |
| chr5.1 | CDS | 50316192 | 50316251 | 50316192 | ID=cds.MS.gene64104.t1;Parent=MS.gene64104.t1 |
| chr5.1 | exon | 50315941 | 50316035 | 50315941 | ID=MS.gene64104.t1.exon9;Parent=MS.gene64104.t1 |
| chr5.1 | CDS | 50315941 | 50316035 | 50315941 | ID=cds.MS.gene64104.t1;Parent=MS.gene64104.t1 |
| chr5.1 | exon | 50315492 | 50315603 | 50315492 | ID=MS.gene64104.t1.exon10;Parent=MS.gene64104.t1 |
| chr5.1 | CDS | 50315492 | 50315603 | 50315492 | ID=cds.MS.gene64104.t1;Parent=MS.gene64104.t1 |
| Gene Sequence |
| Protein sequence |
