Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050021.t1 | XP_003618715.1 | 41.3 | 482 | 59 | 6 | 1 | 258 | 1 | 482 | 4.20E-71 | 278.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050021.t1 | F4I2H7 | 27.5 | 109 | 47 | 2 | 162 | 238 | 623 | 731 | 5.2e-06 | 53.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050021.t1 | G7KMP3 | 41.3 | 482 | 59 | 6 | 1 | 258 | 1 | 482 | 3.0e-71 | 278.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050021 | MS.gene050026 | 0.800437 | 1.44E-48 | -1.69E-46 |
| MS.gene050021 | MS.gene050750 | 0.810684 | 1.02E-50 | -1.69E-46 |
| MS.gene050021 | MS.gene050953 | 0.805726 | 1.16E-49 | -1.69E-46 |
| MS.gene050021 | MS.gene05415 | 0.802822 | 4.67E-49 | -1.69E-46 |
| MS.gene050021 | MS.gene054291 | -0.805773 | 1.14E-49 | -1.69E-46 |
| MS.gene050021 | MS.gene059584 | 0.80531 | 1.42E-49 | -1.69E-46 |
| MS.gene050021 | MS.gene06269 | 0.809642 | 1.71E-50 | -1.69E-46 |
| MS.gene050021 | MS.gene070816 | 0.810703 | 1.01E-50 | -1.69E-46 |
| MS.gene050021 | MS.gene072397 | -0.806878 | 6.64E-50 | -1.69E-46 |
| MS.gene050021 | MS.gene52059 | 0.831059 | 2.07E-55 | -1.69E-46 |
| MS.gene050021 | MS.gene52525 | 0.82028 | 7.46E-53 | -1.69E-46 |
| MS.gene050021 | MS.gene54717 | 0.805162 | 1.53E-49 | -1.69E-46 |
| MS.gene050021 | MS.gene55200 | 0.807491 | 4.92E-50 | -1.69E-46 |
| MS.gene050021 | MS.gene59840 | 0.816333 | 5.84E-52 | -1.69E-46 |
| MS.gene050021 | MS.gene64104 | 0.80542 | 1.35E-49 | -1.69E-46 |
| MS.gene050021 | MS.gene74367 | 0.817462 | 3.26E-52 | -1.69E-46 |
| MS.gene050021 | MS.gene74370 | 0.804743 | 1.87E-49 | -1.69E-46 |
| MS.gene050021 | MS.gene74373 | 0.800135 | 1.66E-48 | -1.69E-46 |
| MS.gene050021 | MS.gene77781 | 0.826917 | 2.09E-54 | -1.69E-46 |
| MS.gene050021 | MS.gene83623 | 0.800357 | 1.50E-48 | -1.69E-46 |
| MS.gene050021 | MS.gene83831 | 0.818359 | 2.04E-52 | -1.69E-46 |
| MS.gene050021 | MS.gene84931 | 0.808816 | 2.57E-50 | -1.69E-46 |
| MS.gene050021 | MS.gene85562 | 0.806159 | 9.42E-50 | -1.69E-46 |
| MS.gene050021 | MS.gene88091 | 0.80061 | 1.33E-48 | -1.69E-46 |
| MS.gene050021 | MS.gene91005 | 0.801092 | 1.06E-48 | -1.69E-46 |
| MS.gene050021 | MS.gene93500 | 0.812015 | 5.24E-51 | -1.69E-46 |
| MS.gene050021 | MS.gene98087 | 0.803836 | 2.88E-49 | -1.69E-46 |
| MS.gene050021 | MS.gene98088 | 0.802784 | 4.76E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050021.t1 | MTR_6g015010 | 76.860 | 121 | 8 | 1 | 158 | 258 | 362 | 482 | 5.19e-57 | 189 |
| MS.gene050021.t1 | MTR_6g015010 | 84.615 | 91 | 14 | 0 | 1 | 91 | 1 | 91 | 2.86e-37 | 137 |
| MS.gene050021.t1 | MTR_7g013070 | 55.556 | 126 | 27 | 3 | 158 | 258 | 333 | 454 | 1.28e-36 | 135 |
| MS.gene050021.t1 | MTR_3g064800 | 39.316 | 117 | 49 | 2 | 162 | 258 | 49 | 163 | 8.65e-19 | 81.6 |
| MS.gene050021.t1 | MTR_3g064800 | 39.316 | 117 | 49 | 2 | 162 | 258 | 19 | 133 | 9.18e-19 | 80.5 |
| MS.gene050021.t1 | MTR_3g064800 | 39.316 | 117 | 49 | 2 | 162 | 258 | 31 | 145 | 1.14e-18 | 80.9 |
| MS.gene050021.t1 | MTR_4g094612 | 42.254 | 71 | 37 | 1 | 192 | 258 | 1 | 71 | 2.65e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050021.t1 | AT5G15510 | 35.517 | 290 | 124 | 8 | 19 | 258 | 212 | 488 | 3.39e-38 | 140 |
| MS.gene050021.t1 | AT3G01015 | 55.372 | 121 | 31 | 2 | 160 | 257 | 360 | 480 | 2.54e-36 | 134 |
| MS.gene050021.t1 | AT5G15510 | 33.333 | 255 | 107 | 8 | 19 | 223 | 212 | 453 | 1.77e-24 | 101 |
| MS.gene050021.t1 | AT5G15510 | 33.333 | 255 | 107 | 8 | 19 | 223 | 212 | 453 | 1.77e-24 | 101 |
| MS.gene050021.t1 | AT5G15510 | 55.814 | 86 | 18 | 1 | 158 | 223 | 368 | 453 | 4.21e-24 | 101 |
| MS.gene050021.t1 | AT5G37478 | 46.392 | 97 | 32 | 1 | 160 | 236 | 36 | 132 | 6.68e-21 | 86.7 |
| MS.gene050021.t1 | AT5G37478 | 46.392 | 97 | 32 | 1 | 160 | 236 | 56 | 152 | 1.15e-20 | 86.7 |
| MS.gene050021.t1 | AT5G37478 | 46.392 | 97 | 32 | 1 | 160 | 236 | 23 | 119 | 1.45e-20 | 85.5 |
Find 50 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTATCTGAAGTTGTTTC+TGG | 0.155037 | 5.4:-51391039 | MS.gene050021:CDS |
| TCCAAGGGTTTCTTCTTATC+TGG | 0.253704 | 5.4:+51391456 | None:intergenic |
| TAAGGCATTGGCTGCGCTTT+AGG | 0.259331 | 5.4:+51389093 | None:intergenic |
| TTTCGATTAGAAAACTCATT+AGG | 0.285358 | 5.4:+51391417 | None:intergenic |
| ATGTGAAACTTTGGTTCTTT+TGG | 0.287997 | 5.4:+51388684 | None:intergenic |
| TAAAGCACTTGATCTTCTTA+TGG | 0.309995 | 5.4:+51388655 | None:intergenic |
| ATGAATGGTCTGTCAAAATA+AGG | 0.316056 | 5.4:+51389075 | None:intergenic |
| GGGTTACAGTTACATCTTCT+TGG | 0.323864 | 5.4:-51391005 | MS.gene050021:CDS |
| AGGAATGGTGTACCTGAAAA+TGG | 0.330943 | 5.4:-51391192 | MS.gene050021:CDS |
| TTCGATTAGAAAACTCATTA+GGG | 0.343147 | 5.4:+51391418 | None:intergenic |
| CTATGAAGCTTCACATCAAT+AGG | 0.379023 | 5.4:+51389501 | None:intergenic |
| ATCTGAAGTTGTTTCTGGAT+TGG | 0.396998 | 5.4:-51391034 | MS.gene050021:CDS |
| GTGTGTAGCAGGAACTCTTC+TGG | 0.405376 | 5.4:-51390832 | MS.gene050021:CDS |
| GGTTACAGTTACATCTTCTT+GGG | 0.415618 | 5.4:-51391004 | MS.gene050021:CDS |
| CATTACCTCGTTGGAATGAA+TGG | 0.424164 | 5.4:+51389060 | None:intergenic |
| TCTTCTTGGGATTGTGGAAG+TGG | 0.435767 | 5.4:-51390991 | MS.gene050021:CDS |
| TCACGCGGAATTTGATCATC+AGG | 0.446542 | 5.4:-51389460 | MS.gene050021:intron |
| TTGTGTGCAGTGTGTGTAGC+AGG | 0.449144 | 5.4:-51390843 | MS.gene050021:intron |
| AGGAAGAGATTAGGAAATTG+AGG | 0.454828 | 5.4:-51389128 | MS.gene050021:CDS |
| GGGATTGTGGAAGTGGAAGA+AGG | 0.460575 | 5.4:-51390984 | MS.gene050021:intron |
| TGGCTGAAGAGGAAGAGATT+AGG | 0.463010 | 5.4:-51389137 | MS.gene050021:CDS |
| AATTCGTCAGAGAAAGTTTG+TGG | 0.464214 | 5.4:-51391322 | MS.gene050021:CDS |
| TTGTTTCTGGATTGGATCAA+AGG | 0.473482 | 5.4:-51391026 | MS.gene050021:CDS |
| TCCCTTACAGTTGGCTGAAG+AGG | 0.485828 | 5.4:-51389148 | MS.gene050021:intron |
| GTTACATCTTCTTGGGATTG+TGG | 0.489323 | 5.4:-51390997 | MS.gene050021:CDS |
| GAAGCTTCATAGTGATTTGA+GGG | 0.498697 | 5.4:-51389490 | MS.gene050021:CDS |
| GTTCAAATTCTCAATTTCCA+AGG | 0.500670 | 5.4:+51391440 | None:intergenic |
| TGTTTCTGGATTGGATCAAA+GGG | 0.501809 | 5.4:-51391025 | MS.gene050021:CDS |
| TGAAGCTTCATAGTGATTTG+AGG | 0.503817 | 5.4:-51389491 | MS.gene050021:CDS |
| TTCAAATTCTCAATTTCCAA+GGG | 0.511479 | 5.4:+51391441 | None:intergenic |
| TTGATCAATCATTACCTCGT+TGG | 0.518913 | 5.4:+51389051 | None:intergenic |
| TGGTGAGGTATGTGAAACTT+TGG | 0.533377 | 5.4:+51388675 | None:intergenic |
| AAATGGTAAAGTAATGCATC+TGG | 0.534292 | 5.4:-51391175 | MS.gene050021:CDS |
| CTCTGACGAATTATCTTCTG+CGG | 0.534478 | 5.4:+51391333 | None:intergenic |
| TGATCAAAGTCCTAAGAAAA+CGG | 0.535593 | 5.4:-51391280 | MS.gene050021:CDS |
| ACCAGATAAGAAGAAACCCT+TGG | 0.550621 | 5.4:-51391457 | MS.gene050021:CDS |
| AGAGATTAGGAAATTGAGGA+AGG | 0.551486 | 5.4:-51389124 | MS.gene050021:CDS |
| TATTCGACGATTTCTGAAGT+GGG | 0.563035 | 5.4:+51391394 | None:intergenic |
| CACTTGATCTTCTTATGGTG+AGG | 0.566706 | 5.4:+51388660 | None:intergenic |
| TTTGTGCTTTCTTTCACAGG+AGG | 0.566913 | 5.4:+51389525 | None:intergenic |
| TAAAGTAATGCATCTGGTGA+AGG | 0.570111 | 5.4:-51391169 | MS.gene050021:CDS |
| TAAGTGTGTTTGCGAAGCAA+TGG | 0.571703 | 5.4:-51391223 | MS.gene050021:CDS |
| TTATTCGACGATTTCTGAAG+TGG | 0.574876 | 5.4:+51391393 | None:intergenic |
| GGTCTGTCAAAATAAGGCAT+TGG | 0.582294 | 5.4:+51389081 | None:intergenic |
| AAATGTGGAGAGAATAGTGA+TGG | 0.619254 | 5.4:-51391249 | MS.gene050021:CDS |
| GCAATGGAAGAAACAAGGAA+TGG | 0.646394 | 5.4:-51391207 | MS.gene050021:CDS |
| GCGAAGCAATGGAAGAAACA+AGG | 0.647299 | 5.4:-51391212 | MS.gene050021:CDS |
| TTTGAGGGCAATTGATCACG+CGG | 0.675381 | 5.4:-51389475 | MS.gene050021:CDS |
| TGTAGCAGGAACTCTTCTGG+CGG | 0.696325 | 5.4:-51390829 | MS.gene050021:CDS |
| ACAGACCATTCATTCCAACG+AGG | 0.804126 | 5.4:-51389065 | MS.gene050021:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTGATACAAATAAT+TGG | - | chr5.4:51389539-51389558 | MS.gene050021:CDS | 10.0% |
| !! | AAAACTTTATGTTTATTTGA+TGG | - | chr5.4:51390067-51390086 | MS.gene050021:intron | 15.0% |
| !! | TAAAAAATTACGTTTATACT+TGG | + | chr5.4:51389848-51389867 | None:intergenic | 15.0% |
| !! | TTAAAAATTCTTTACATTGA+CGG | - | chr5.4:51390108-51390127 | MS.gene050021:intron | 15.0% |
| !!! | TTATTTATATTTTGGTTTGA+AGG | - | chr5.4:51391351-51391370 | MS.gene050021:CDS | 15.0% |
| !!! | TTGTCTCATTATTTATATTT+TGG | - | chr5.4:51391343-51391362 | MS.gene050021:CDS | 15.0% |
| !! | ACTATAATACTAATGAAGAT+TGG | - | chr5.4:51389483-51389502 | MS.gene050021:CDS | 20.0% |
| !! | CAAATTTATCATAATTCTGT+TGG | - | chr5.4:51390473-51390492 | MS.gene050021:intron | 20.0% |
| !! | TTTGATAGAATAACAGAAAA+GGG | - | chr5.4:51390740-51390759 | MS.gene050021:intron | 20.0% |
| !!! | ATTTTAGATAAAGGAAAACA+TGG | + | chr5.4:51390893-51390912 | None:intergenic | 20.0% |
| !!! | GTAATTTTTTAATCAAGCAT+AGG | - | chr5.4:51389857-51389876 | MS.gene050021:intron | 20.0% |
| !!! | TCATTTTTGCAAAATGTTAT+TGG | - | chr5.4:51389422-51389441 | MS.gene050021:intron | 20.0% |
| ! | AGAGGTTACTTAGTATAAAA+AGG | - | chr5.4:51388939-51388958 | MS.gene050021:intron | 25.0% |
| ! | ATACACACTTTAATTGATCT+CGG | + | chr5.4:51391272-51391291 | None:intergenic | 25.0% |
| ! | ATAGCAATTCTCAATTAGAA+CGG | - | chr5.4:51390247-51390266 | MS.gene050021:intron | 25.0% |
| ! | ATCGTAATTACATTACATGA+TGG | + | chr5.4:51389927-51389946 | None:intergenic | 25.0% |
| ! | ATGCTAGGATATTAGATATA+AGG | + | chr5.4:51390213-51390232 | None:intergenic | 25.0% |
| ! | GAAAATTTAAATTGAACCAC+CGG | + | chr5.4:51389962-51389981 | None:intergenic | 25.0% |
| ! | GACAAAAAGAGACAAAATAA+TGG | + | chr5.4:51391328-51391347 | None:intergenic | 25.0% |
| ! | GAGGTTACTTAGTATAAAAA+GGG | - | chr5.4:51388940-51388959 | MS.gene050021:intron | 25.0% |
| ! | GTTTGATAGAATAACAGAAA+AGG | - | chr5.4:51390739-51390758 | MS.gene050021:intron | 25.0% |
| ! | TATAATGCTATTGTAGCAAA+GGG | - | chr5.4:51389619-51389638 | MS.gene050021:intron | 25.0% |
| ! | TCATGATGTGTAAAACTAAA+GGG | + | chr5.4:51390671-51390690 | None:intergenic | 25.0% |
| ! | TCGTAATTACATTACATGAT+GGG | + | chr5.4:51389926-51389945 | None:intergenic | 25.0% |
| ! | TTAGCGATTCACTATTAATA+AGG | - | chr5.4:51389506-51389525 | MS.gene050021:CDS | 25.0% |
| ! | TTCAAATTCTCAATTTCCAA+GGG | + | chr5.4:51388641-51388660 | None:intergenic | 25.0% |
| ! | TTCATGATGTGTAAAACTAA+AGG | + | chr5.4:51390672-51390691 | None:intergenic | 25.0% |
| ! | TTCGATTAGAAAACTCATTA+GGG | + | chr5.4:51388664-51388683 | None:intergenic | 25.0% |
| ! | TTTCGATTAGAAAACTCATT+AGG | + | chr5.4:51388665-51388684 | None:intergenic | 25.0% |
| !! | ATTTTGCACTGTTATGAATT+CGG | - | chr5.4:51391300-51391319 | MS.gene050021:CDS | 25.0% |
| !! | TGACATATCATTTTGTGATT+CGG | - | chr5.4:51391110-51391129 | MS.gene050021:intron | 25.0% |
| !! | TTTATCTAAAATGTTGACGT+CGG | - | chr5.4:51390901-51390920 | MS.gene050021:intron | 25.0% |
| !!! | AAATTTTTCAGTGGCTATAT+TGG | - | chr5.4:51389584-51389603 | MS.gene050021:intron | 25.0% |
| !!! | AGTTTCTTCAAATTTTTCAG+TGG | - | chr5.4:51389575-51389594 | MS.gene050021:intron | 25.0% |
| !!! | GTCATTGATTTGAAATCAAT+TGG | + | chr5.4:51391250-51391269 | None:intergenic | 25.0% |
| !!! | TTTAAAGTTGATTTGACGAA+AGG | - | chr5.4:51391213-51391232 | MS.gene050021:CDS | 25.0% |
| AAACATGGCAACTCAAAATT+AGG | + | chr5.4:51390878-51390897 | None:intergenic | 30.0% | |
| AAATGGTAAAGTAATGCATC+TGG | - | chr5.4:51388904-51388923 | MS.gene050021:intron | 30.0% | |
| AATTCAGTTTCAGTGGAATT+AGG | - | chr5.4:51390388-51390407 | MS.gene050021:intron | 30.0% | |
| ACATGTGATGTAATGAACAT+TGG | - | chr5.4:51389393-51389412 | MS.gene050021:intron | 30.0% | |
| AGAATAACAGAAAAGGGAAT+TGG | - | chr5.4:51390746-51390765 | MS.gene050021:intron | 30.0% | |
| AGAGAATGAGAAGAAGAATA+AGG | - | chr5.4:51388988-51389007 | MS.gene050021:intron | 30.0% | |
| AGCATATACACTTCAAACTA+AGG | + | chr5.4:51389783-51389802 | None:intergenic | 30.0% | |
| ATAATGCTATTGTAGCAAAG+GGG | - | chr5.4:51389620-51389639 | MS.gene050021:intron | 30.0% | |
| ATGAATGGTCTGTCAAAATA+AGG | + | chr5.4:51391007-51391026 | None:intergenic | 30.0% | |
| CATGATGTGTAAAACTAAAG+GGG | + | chr5.4:51390670-51390689 | None:intergenic | 30.0% | |
| CTATAATGCTATTGTAGCAA+AGG | - | chr5.4:51389618-51389637 | MS.gene050021:intron | 30.0% | |
| GAATTAAATCTGTGAGTAGT+TGG | - | chr5.4:51390138-51390157 | MS.gene050021:intron | 30.0% | |
| GGAATTGGAAATACAACAAA+AGG | - | chr5.4:51390761-51390780 | MS.gene050021:intron | 30.0% | |
| GTTCAAATTCTCAATTTCCA+AGG | + | chr5.4:51388642-51388661 | None:intergenic | 30.0% | |
| TAACAACTCACAGTCAAATT+TGG | - | chr5.4:51389806-51389825 | MS.gene050021:intron | 30.0% | |
| TCATTCGATCTCAAAATCAA+TGG | - | chr5.4:51391181-51391200 | MS.gene050021:CDS | 30.0% | |
| TCTAATATCCTAGCATAACA+TGG | - | chr5.4:51390217-51390236 | MS.gene050021:intron | 30.0% | |
| TGATCAAAGTCCTAAGAAAA+CGG | - | chr5.4:51388799-51388818 | MS.gene050021:intron | 30.0% | |
| TGTACTAAATTCAGTTTCAG+TGG | - | chr5.4:51390381-51390400 | MS.gene050021:intron | 30.0% | |
| TTACGATTATAGCTTATGTC+CGG | - | chr5.4:51389940-51389959 | MS.gene050021:intron | 30.0% | |
| ! | GACGTCAACATTTTAGATAA+AGG | + | chr5.4:51390902-51390921 | None:intergenic | 30.0% |
| ! | TAAAGCACTTGATCTTCTTA+TGG | + | chr5.4:51391427-51391446 | None:intergenic | 30.0% |
| ! | TGCATTACTTTACCATTTTC+AGG | + | chr5.4:51388902-51388921 | None:intergenic | 30.0% |
| ! | TTACACAAAACCGTTTTCTT+AGG | + | chr5.4:51388812-51388831 | None:intergenic | 30.0% |
| ! | TTGATTTGAGATGTGAAAGT+TGG | + | chr5.4:51390798-51390817 | None:intergenic | 30.0% |
| ! | TTTAAATTTTCACGCACTGT+CGG | - | chr5.4:51389971-51389990 | MS.gene050021:intron | 30.0% |
| !! | AAAACGGTTTTGTGTAAATG+TGG | - | chr5.4:51388815-51388834 | MS.gene050021:intron | 30.0% |
| !! | GTAAAAGAGATTTTGACAGA+AGG | - | chr5.4:51389674-51389693 | MS.gene050021:intron | 30.0% |
| !!! | ATGTGAAACTTTGGTTCTTT+TGG | + | chr5.4:51391398-51391417 | None:intergenic | 30.0% |
| !!! | TTTGGTTCTTTTGGTATAGT+TGG | + | chr5.4:51391389-51391408 | None:intergenic | 30.0% |
| AAATGTGGAGAGAATAGTGA+TGG | - | chr5.4:51388830-51388849 | MS.gene050021:intron | 35.0% | |
| AATTCGTCAGAGAAAGTTTG+TGG | - | chr5.4:51388757-51388776 | MS.gene050021:intron | 35.0% | |
| AGACTCAAGAGGATGTTTAT+TGG | + | chr5.4:51390341-51390360 | None:intergenic | 35.0% | |
| AGAGATTAGGAAATTGAGGA+AGG | - | chr5.4:51390955-51390974 | MS.gene050021:intron | 35.0% | |
| AGGAAGAGATTAGGAAATTG+AGG | - | chr5.4:51390951-51390970 | MS.gene050021:intron | 35.0% | |
| AGTACATATCAGCTGACATA+TGG | + | chr5.4:51390367-51390386 | None:intergenic | 35.0% | |
| AGTTCATCTTCATCCTTAAC+AGG | + | chr5.4:51389025-51389044 | None:intergenic | 35.0% | |
| ATTTGTGAATAAGGCATGTC+CGG | - | chr5.4:51389357-51389376 | MS.gene050021:intron | 35.0% | |
| CAGAAGAATGCTTAGACAAA+TGG | + | chr5.4:51390516-51390535 | None:intergenic | 35.0% | |
| CTATGAAGCTTCACATCAAT+AGG | + | chr5.4:51390581-51390600 | None:intergenic | 35.0% | |
| GAAGCTTCATAGTGATTTGA+GGG | - | chr5.4:51390589-51390608 | MS.gene050021:intron | 35.0% | |
| GATGTGAAAGTTGGAAAACA+TGG | + | chr5.4:51390841-51390860 | None:intergenic | 35.0% | |
| GGTATATATTCCCTTACAGT+TGG | - | chr5.4:51390922-51390941 | MS.gene050021:intron | 35.0% | |
| GGTTACAGTTACATCTTCTT+GGG | - | chr5.4:51389075-51389094 | MS.gene050021:CDS | 35.0% | |
| TAAAGTAATGCATCTGGTGA+AGG | - | chr5.4:51388910-51388929 | MS.gene050021:intron | 35.0% | |
| TAACGCAGCAACATCATTAA+GGG | + | chr5.4:51390314-51390333 | None:intergenic | 35.0% | |
| TCAATTAGAACGGTACATTG+TGG | - | chr5.4:51390257-51390276 | MS.gene050021:intron | 35.0% | |
| TGAAGCTTCATAGTGATTTG+AGG | - | chr5.4:51390588-51390607 | MS.gene050021:intron | 35.0% | |
| TGATGAATGCTTAACTGTGT+AGG | - | chr5.4:51390701-51390720 | MS.gene050021:intron | 35.0% | |
| TTAACGCAGCAACATCATTA+AGG | + | chr5.4:51390315-51390334 | None:intergenic | 35.0% | |
| TTGATCAATCATTACCTCGT+TGG | + | chr5.4:51391031-51391050 | None:intergenic | 35.0% | |
| ! | ACAAACACAGAAAGTACATG+AGG | + | chr5.4:51390434-51390453 | None:intergenic | 35.0% |
| ! | CATGCCTTATTCACAAATGT+CGG | + | chr5.4:51389355-51389374 | None:intergenic | 35.0% |
| ! | CTGATTTGAGATGTGAAAGT+TGG | + | chr5.4:51390850-51390869 | None:intergenic | 35.0% |
| ! | GAACTATCTGAAGTTGTTTC+TGG | - | chr5.4:51389040-51389059 | MS.gene050021:intron | 35.0% |
| ! | TTAAATTTTCACGCACTGTC+GGG | - | chr5.4:51389972-51389991 | MS.gene050021:intron | 35.0% |
| ! | TTATTCGACGATTTCTGAAG+TGG | + | chr5.4:51388689-51388708 | None:intergenic | 35.0% |
| !! | AGAAGAACAGTTGATGAAGA+AGG | - | chr5.4:51389652-51389671 | MS.gene050021:intron | 35.0% |
| !! | ATCTGAAGTTGTTTCTGGAT+TGG | - | chr5.4:51389045-51389064 | MS.gene050021:intron | 35.0% |
| !! | ATGAGGTATTGTGAGCAAAA+AGG | + | chr5.4:51390417-51390436 | None:intergenic | 35.0% |
| !! | GATGTGAAAGTTGGTAAACA+TGG | + | chr5.4:51390789-51390808 | None:intergenic | 35.0% |
| !! | TATTCGACGATTTCTGAAGT+GGG | + | chr5.4:51388688-51388707 | None:intergenic | 35.0% |
| !! | TGTTTCTGGATTGGATCAAA+GGG | - | chr5.4:51389054-51389073 | MS.gene050021:intron | 35.0% |
| !! | TTGTTTCTGGATTGGATCAA+AGG | - | chr5.4:51389053-51389072 | MS.gene050021:intron | 35.0% |
| AAGGGAGAAAGAGAAGAATG+AGG | - | chr5.4:51388958-51388977 | MS.gene050021:intron | 40.0% | |
| ACATATGGTCAAGACTCAAG+AGG | + | chr5.4:51390352-51390371 | None:intergenic | 40.0% | |
| ACCAGATAAGAAGAAACCCT+TGG | - | chr5.4:51388622-51388641 | MS.gene050021:CDS | 40.0% | |
| AGGAATGGTGTACCTGAAAA+TGG | - | chr5.4:51388887-51388906 | MS.gene050021:intron | 40.0% | |
| CACTTGATCTTCTTATGGTG+AGG | + | chr5.4:51391422-51391441 | None:intergenic | 40.0% | |
| CATGACACAGTTATCCATCT+TGG | - | chr5.4:51391158-51391177 | MS.gene050021:intron | 40.0% | |
| CATTACCTCGTTGGAATGAA+TGG | + | chr5.4:51391022-51391041 | None:intergenic | 40.0% | |
| CCTACCGACATTTGTGAATA+AGG | - | chr5.4:51389348-51389367 | MS.gene050021:intron | 40.0% | |
| CCTTATTCACAAATGTCGGT+AGG | + | chr5.4:51389351-51389370 | None:intergenic | 40.0% | |
| CTATTGATGAACCTGAGGTA+AGG | - | chr5.4:51389739-51389758 | MS.gene050021:intron | 40.0% | |
| CTCTGACGAATTATCTTCTG+CGG | + | chr5.4:51388749-51388768 | None:intergenic | 40.0% | |
| CTTGTGTCAATTGTTGTGTG+TGG | - | chr5.4:51389205-51389224 | MS.gene050021:intron | 40.0% | |
| GAAAGAGAAGAATGAGGATG+AGG | - | chr5.4:51388964-51388983 | MS.gene050021:intron | 40.0% | |
| GCAATGGAAGAAACAAGGAA+TGG | - | chr5.4:51388872-51388891 | MS.gene050021:intron | 40.0% | |
| GGGTTACAGTTACATCTTCT+TGG | - | chr5.4:51389074-51389093 | MS.gene050021:CDS | 40.0% | |
| GGTCTGTCAAAATAAGGCAT+TGG | + | chr5.4:51391001-51391020 | None:intergenic | 40.0% | |
| GGTGATGAAACAACCTGTTA+AGG | - | chr5.4:51389009-51389028 | MS.gene050021:intron | 40.0% | |
| GTGTTAGTGTTTGTGACATG+CGG | - | chr5.4:51389458-51389477 | MS.gene050021:intron | 40.0% | |
| GTTACATCTTCTTGGGATTG+TGG | - | chr5.4:51389082-51389101 | MS.gene050021:CDS | 40.0% | |
| TAAGTGTGTTTGCGAAGCAA+TGG | - | chr5.4:51388856-51388875 | MS.gene050021:intron | 40.0% | |
| TATCCTAGCATAACATGGCA+AGG | - | chr5.4:51390222-51390241 | MS.gene050021:intron | 40.0% | |
| TCAGGTTCATCAATAGTCCA+TGG | + | chr5.4:51389735-51389754 | None:intergenic | 40.0% | |
| TCCAAGGGTTTCTTCTTATC+TGG | + | chr5.4:51388626-51388645 | None:intergenic | 40.0% | |
| TGAATGCTTAACTGTGTAGG+TGG | - | chr5.4:51390704-51390723 | MS.gene050021:intron | 40.0% | |
| TGGTGAGGTATGTGAAACTT+TGG | + | chr5.4:51391407-51391426 | None:intergenic | 40.0% | |
| TTACATCACATGTGTCGTGT+TGG | + | chr5.4:51389386-51389405 | None:intergenic | 40.0% | |
| TTGAGATCGAATGACCAAGA+TGG | + | chr5.4:51391175-51391194 | None:intergenic | 40.0% | |
| TTTGTGCTTTCTTTCACAGG+AGG | + | chr5.4:51390557-51390576 | None:intergenic | 40.0% | |
| ! | ATCTGGTGAAGGATTTTGAG+AGG | - | chr5.4:51388921-51388940 | MS.gene050021:intron | 40.0% |
| ! | ATGGACTATTGATGAACCTG+AGG | - | chr5.4:51389734-51389753 | MS.gene050021:intron | 40.0% |
| ! | GCTAATGGACAAGCATTAGT+AGG | + | chr5.4:51389893-51389912 | None:intergenic | 40.0% |
| ! | TAAATTTTCACGCACTGTCG+GGG | - | chr5.4:51389973-51389992 | MS.gene050021:intron | 40.0% |
| ! | TTACATGATGGGACAATCAG+AGG | + | chr5.4:51389915-51389934 | None:intergenic | 40.0% |
| !! | ATGAGAGTACCTATTGCACA+AGG | - | chr5.4:51389705-51389724 | MS.gene050021:intron | 40.0% |
| !! | GGTTTTGTGCTTTCTTTCAC+AGG | + | chr5.4:51390560-51390579 | None:intergenic | 40.0% |
| ACAGACCATTCATTCCAACG+AGG | - | chr5.4:51391014-51391033 | MS.gene050021:CDS | 45.0% | |
| ATGGGACAATCAGAGGCTAA+TGG | + | chr5.4:51389908-51389927 | None:intergenic | 45.0% | |
| CATGGAAGACCTTGTGCAAT+AGG | + | chr5.4:51389717-51389736 | None:intergenic | 45.0% | |
| CGATTATAGCTTATGTCCGG+TGG | - | chr5.4:51389943-51389962 | MS.gene050021:intron | 45.0% | |
| CTATTGCACAAGGTCTTCCA+TGG | - | chr5.4:51389715-51389734 | MS.gene050021:intron | 45.0% | |
| GCGAAGCAATGGAAGAAACA+AGG | - | chr5.4:51388867-51388886 | MS.gene050021:intron | 45.0% | |
| TCACGCGGAATTTGATCATC+AGG | - | chr5.4:51390619-51390638 | MS.gene050021:intron | 45.0% | |
| TCCTCTTCAGCCAACTGTAA+GGG | + | chr5.4:51390935-51390954 | None:intergenic | 45.0% | |
| TCTCCTTGCCATGTTATGCT+AGG | + | chr5.4:51390228-51390247 | None:intergenic | 45.0% | |
| TCTTCTTGGGATTGTGGAAG+TGG | - | chr5.4:51389088-51389107 | MS.gene050021:CDS | 45.0% | |
| TGAGAAATCGACCTTACCTC+AGG | + | chr5.4:51389753-51389772 | None:intergenic | 45.0% | |
| TGGCTGAAGAGGAAGAGATT+AGG | - | chr5.4:51390942-51390961 | MS.gene050021:intron | 45.0% | |
| TTCCTCTTCAGCCAACTGTA+AGG | + | chr5.4:51390936-51390955 | None:intergenic | 45.0% | |
| TTTGAGGGCAATTGATCACG+CGG | - | chr5.4:51390604-51390623 | MS.gene050021:intron | 45.0% | |
| !! | TGGCTATATTGGTGATGCAC+TGG | - | chr5.4:51389595-51389614 | MS.gene050021:intron | 45.0% |
| ACATGTGTCGTGTTGGACAC+CGG | + | chr5.4:51389379-51389398 | None:intergenic | 50.0% | |
| GGGATTGTGGAAGTGGAAGA+AGG | - | chr5.4:51389095-51389114 | MS.gene050021:CDS | 50.0% | |
| GTCGGTAGGTACTATAGAGC+TGG | + | chr5.4:51389337-51389356 | None:intergenic | 50.0% | |
| GTGTGTAGCAGGAACTCTTC+TGG | - | chr5.4:51389247-51389266 | MS.gene050021:intron | 50.0% | |
| TCCCTTACAGTTGGCTGAAG+AGG | - | chr5.4:51390931-51390950 | MS.gene050021:intron | 50.0% | |
| TGTAGCAGGAACTCTTCTGG+CGG | - | chr5.4:51389250-51389269 | MS.gene050021:intron | 50.0% | |
| TTGTGTGCAGTGTGTGTAGC+AGG | - | chr5.4:51389236-51389255 | MS.gene050021:intron | 50.0% | |
| !! | TAAGGCATTGGCTGCGCTTT+AGG | + | chr5.4:51390989-51391008 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 51388617 | 51391484 | 51388617 | ID=MS.gene050021 |
| chr5.4 | mRNA | 51388617 | 51391484 | 51388617 | ID=MS.gene050021.t1;Parent=MS.gene050021 |
| chr5.4 | exon | 51391159 | 51391484 | 51391159 | ID=MS.gene050021.t1.exon1;Parent=MS.gene050021.t1 |
| chr5.4 | CDS | 51391159 | 51391484 | 51391159 | ID=cds.MS.gene050021.t1;Parent=MS.gene050021.t1 |
| chr5.4 | exon | 51390985 | 51391070 | 51390985 | ID=MS.gene050021.t1.exon2;Parent=MS.gene050021.t1 |
| chr5.4 | CDS | 51390985 | 51391070 | 51390985 | ID=cds.MS.gene050021.t1;Parent=MS.gene050021.t1 |
| chr5.4 | exon | 51390810 | 51390855 | 51390810 | ID=MS.gene050021.t1.exon3;Parent=MS.gene050021.t1 |
| chr5.4 | CDS | 51390810 | 51390855 | 51390810 | ID=cds.MS.gene050021.t1;Parent=MS.gene050021.t1 |
| chr5.4 | exon | 51389461 | 51389575 | 51389461 | ID=MS.gene050021.t1.exon4;Parent=MS.gene050021.t1 |
| chr5.4 | CDS | 51389461 | 51389575 | 51389461 | ID=cds.MS.gene050021.t1;Parent=MS.gene050021.t1 |
| chr5.4 | exon | 51389066 | 51389160 | 51389066 | ID=MS.gene050021.t1.exon5;Parent=MS.gene050021.t1 |
| chr5.4 | CDS | 51389066 | 51389160 | 51389066 | ID=cds.MS.gene050021.t1;Parent=MS.gene050021.t1 |
| chr5.4 | exon | 51388617 | 51388728 | 51388617 | ID=MS.gene050021.t1.exon6;Parent=MS.gene050021.t1 |
| chr5.4 | CDS | 51388617 | 51388728 | 51388617 | ID=cds.MS.gene050021.t1;Parent=MS.gene050021.t1 |
| Gene Sequence |
| Protein sequence |
