Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64210.t1 | XP_003589468.1 | 88.5 | 340 | 29 | 1 | 1 | 330 | 1 | 340 | 3.00E-98 | 368.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64210.t1 | Q8LEM6 | 77.7 | 148 | 33 | 0 | 1 | 148 | 1 | 148 | 2.9e-65 | 250.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64210.t1 | G7I756 | 88.5 | 340 | 29 | 1 | 1 | 330 | 1 | 340 | 2.2e-98 | 368.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050707 | MS.gene64210 | 0.802788 | 4.75E-49 | -1.69E-46 |
| MS.gene052308 | MS.gene64210 | 0.808516 | 2.98E-50 | -1.69E-46 |
| MS.gene05652 | MS.gene64210 | 0.828233 | 1.01E-54 | -1.69E-46 |
| MS.gene057669 | MS.gene64210 | 0.806228 | 9.11E-50 | -1.69E-46 |
| MS.gene058128 | MS.gene64210 | 0.803618 | 3.20E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene64210 | 0.813998 | 1.93E-51 | -1.69E-46 |
| MS.gene05929 | MS.gene64210 | 0.802199 | 6.28E-49 | -1.69E-46 |
| MS.gene059616 | MS.gene64210 | 0.834594 | 2.74E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64210.t1 | MTR_1g024930 | 93.824 | 340 | 11 | 1 | 1 | 330 | 1 | 340 | 0.0 | 576 |
| MS.gene64210.t1 | MTR_3g113790 | 59.517 | 331 | 86 | 6 | 1 | 330 | 151 | 434 | 1.53e-117 | 346 |
| MS.gene64210.t1 | MTR_3g113790 | 79.221 | 154 | 32 | 0 | 1 | 154 | 151 | 304 | 7.43e-90 | 271 |
| MS.gene64210.t1 | MTR_1g057940 | 44.211 | 190 | 87 | 2 | 1 | 190 | 1 | 171 | 5.42e-57 | 186 |
| MS.gene64210.t1 | MTR_7g105810 | 50.685 | 146 | 72 | 0 | 1 | 146 | 1 | 146 | 1.68e-55 | 178 |
| MS.gene64210.t1 | MTR_7g105810 | 50.345 | 145 | 72 | 0 | 1 | 145 | 1 | 145 | 1.65e-54 | 177 |
| MS.gene64210.t1 | MTR_7g105810 | 50.345 | 145 | 72 | 0 | 1 | 145 | 14 | 158 | 3.56e-54 | 176 |
| MS.gene64210.t1 | MTR_7g105810 | 45.545 | 101 | 55 | 0 | 45 | 145 | 12 | 112 | 5.76e-29 | 109 |
| MS.gene64210.t1 | MTR_5g019720 | 32.632 | 95 | 62 | 1 | 15 | 109 | 37 | 129 | 2.38e-13 | 68.2 |
| MS.gene64210.t1 | MTR_5g019720 | 27.826 | 115 | 81 | 1 | 15 | 129 | 37 | 149 | 1.04e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64210.t1 | AT5G42560 | 52.439 | 328 | 118 | 7 | 1 | 326 | 1 | 292 | 9.23e-98 | 291 |
| MS.gene64210.t1 | AT5G42560 | 51.582 | 316 | 115 | 7 | 13 | 326 | 2 | 281 | 2.53e-91 | 274 |
| MS.gene64210.t1 | AT5G42560 | 51.582 | 316 | 115 | 7 | 13 | 326 | 2 | 281 | 2.53e-91 | 274 |
| MS.gene64210.t1 | AT1G19950 | 47.353 | 340 | 139 | 6 | 1 | 328 | 1 | 312 | 5.30e-91 | 275 |
| MS.gene64210.t1 | AT1G75700 | 64.103 | 156 | 56 | 0 | 1 | 156 | 1 | 156 | 1.42e-78 | 238 |
| MS.gene64210.t1 | AT1G75700 | 64.103 | 156 | 56 | 0 | 1 | 156 | 1 | 156 | 1.42e-78 | 238 |
| MS.gene64210.t1 | AT1G75700 | 54.054 | 185 | 56 | 1 | 1 | 156 | 1 | 185 | 7.45e-72 | 222 |
| MS.gene64210.t1 | AT2G36020 | 50.955 | 157 | 77 | 0 | 1 | 157 | 1 | 157 | 4.54e-59 | 191 |
| MS.gene64210.t1 | AT4G36720 | 29.032 | 93 | 64 | 2 | 15 | 107 | 45 | 135 | 1.48e-11 | 63.2 |
Find 84 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAGCTCCGATCAATTTC+TGG | 0.157517 | 1.3:-1227319 | None:intergenic |
| GGAAGTAAAAGAGGAGTTAT+TGG | 0.203411 | 1.3:+1228341 | MS.gene64210:CDS |
| TCCTCTTCAGCAACTGAAAA+TGG | 0.204563 | 1.3:+1228624 | MS.gene64210:CDS |
| CAGATGAAGGATTAGACTTC+TGG | 0.208821 | 1.3:-1228533 | None:intergenic |
| AATCGAAGCTGTTCAATTTC+CGG | 0.211353 | 1.3:-1226827 | None:intergenic |
| CCGAATACTTTCTTCCATTC+TGG | 0.228086 | 1.3:-1228670 | None:intergenic |
| ATAATTATATACCTTTGTTT+TGG | 0.244409 | 1.3:-1227166 | None:intergenic |
| AAATTGAACAGCTTCGATTT+TGG | 0.251242 | 1.3:+1226831 | MS.gene64210:CDS |
| AAAGTAGCCCCTCCTGTTGC+AGG | 0.293457 | 1.3:+1228381 | MS.gene64210:CDS |
| GCTGTTGATTCAATATTCTT+TGG | 0.315816 | 1.3:-1228594 | None:intergenic |
| GCGGCTGGTTGGCCCTTGGC+AGG | 0.329188 | 1.3:-1228249 | None:intergenic |
| ACAATATTGCATACCAATAC+TGG | 0.331896 | 1.3:-1226856 | None:intergenic |
| CCAGAATGGAAGAAAGTATT+CGG | 0.341573 | 1.3:+1228670 | MS.gene64210:CDS |
| GGTTGGCCCTTGGCAGGTGC+AGG | 0.343393 | 1.3:-1228243 | None:intergenic |
| AAGCAGCTACAGGAGGCTTC+TGG | 0.363846 | 1.3:-1228443 | None:intergenic |
| ATGATAATTGTTTCAGATGA+AGG | 0.367093 | 1.3:-1228546 | None:intergenic |
| TTTCAGGGATACAGAATGAT+AGG | 0.376443 | 1.3:+1226517 | None:intergenic |
| GCAACAGGAGGGGCTACTTT+AGG | 0.385854 | 1.3:-1228378 | None:intergenic |
| AACCAGCTATAGGAGGCTTC+TGG | 0.393471 | 1.3:-1228473 | None:intergenic |
| CTACTGGGTTCCTACTGATC+TGG | 0.407544 | 1.3:-1228718 | None:intergenic |
| TGAGTAGTTAAACCAGCTAT+AGG | 0.410981 | 1.3:-1228483 | None:intergenic |
| ATTGCAGCAACGACCGGGAC+CGG | 0.424962 | 1.3:+1228203 | MS.gene64210:intron |
| ATGACAGTGTGTGAGAGATT+TGG | 0.431821 | 1.3:+1226984 | MS.gene64210:CDS |
| TGCAACATATGGTTTAAAGA+AGG | 0.441591 | 1.3:-1227287 | None:intergenic |
| AATGTATTGTGAAGCTAAGT+TGG | 0.443796 | 1.3:+1227119 | MS.gene64210:CDS |
| TGTTTGTTTAAACCTGCAAC+AGG | 0.458598 | 1.3:-1228393 | None:intergenic |
| TGGTTATTTAAAGCAGCTAC+AGG | 0.459504 | 1.3:-1228453 | None:intergenic |
| AGCAGCGGCTGGTTGGCCCT+TGG | 0.466244 | 1.3:-1228253 | None:intergenic |
| AGATGAAGGATTAGACTTCT+GGG | 0.473622 | 1.3:-1228532 | None:intergenic |
| TGTGGTTCTGTAGCAGCGGC+TGG | 0.474161 | 1.3:-1228264 | None:intergenic |
| TGATAGGATCCTTTCTTACC+TGG | 0.479771 | 1.3:+1226533 | MS.gene64210:CDS |
| TCTCAAAGAGCTGTTAGTTA+CGG | 0.482414 | 1.3:+1227382 | MS.gene64210:CDS |
| CACAAGCGCCCAGGTAAGAA+AGG | 0.483813 | 1.3:-1226542 | None:intergenic |
| GTTCCAAAAGGAAGTAAAAG+AGG | 0.484315 | 1.3:+1228332 | MS.gene64210:CDS |
| CAGAATGGAAGAAAGTATTC+GGG | 0.484520 | 1.3:+1228671 | MS.gene64210:CDS |
| AACCAGAAGCCTCCTATAGC+TGG | 0.489915 | 1.3:+1228471 | MS.gene64210:CDS |
| ACTTAGCTTCACAATACATT+GGG | 0.490800 | 1.3:-1227116 | None:intergenic |
| CTTGAAATTGCAGCAACGAC+CGG | 0.494610 | 1.3:+1228197 | MS.gene64210:intron |
| CTTGAAGTTGTGCTAGAGGC+AGG | 0.497182 | 1.3:-1228306 | None:intergenic |
| GTTCTGTAGCAGCGGCTGGT+TGG | 0.499552 | 1.3:-1228260 | None:intergenic |
| ATCGGAGCTTGTCGGAACTA+AGG | 0.500483 | 1.3:+1227329 | MS.gene64210:CDS |
| GTTGTGCTAGAGGCAGGAGA+TGG | 0.506091 | 1.3:-1228300 | None:intergenic |
| ACCTGAGCGGACTGAGGTGC+TGG | 0.512203 | 1.3:-1227454 | None:intergenic |
| TCGTAAACCTGCACCTGCCA+AGG | 0.519991 | 1.3:+1228236 | MS.gene64210:CDS |
| TTGTGCTAGAGGCAGGAGAT+GGG | 0.523724 | 1.3:-1228299 | None:intergenic |
| AACTTAGCTTCACAATACAT+TGG | 0.528637 | 1.3:-1227117 | None:intergenic |
| AACTTCAAGTCAGTTCCAAA+AGG | 0.529032 | 1.3:+1228320 | MS.gene64210:CDS |
| GGGGCTACTTTAGGAGCTTG+TGG | 0.533157 | 1.3:-1228369 | None:intergenic |
| ACCAGCACCTCAGTCCGCTC+AGG | 0.534486 | 1.3:+1227453 | MS.gene64210:CDS |
| TGTAAAGGAGGAGACCAGAA+TGG | 0.537004 | 1.3:+1228656 | MS.gene64210:CDS |
| AAGAAAGTATTCGGGTTACA+CGG | 0.537361 | 1.3:+1228679 | MS.gene64210:CDS |
| TTGAAATTGCAGCAACGACC+GGG | 0.537573 | 1.3:+1228198 | MS.gene64210:intron |
| ATAGCATTCATACGCTGGAT+AGG | 0.541233 | 1.3:-1226783 | None:intergenic |
| TTGCAGCAACGACCGGGACC+GGG | 0.545537 | 1.3:+1228204 | MS.gene64210:intron |
| AGAAAGTATTCGGGTTACAC+GGG | 0.556108 | 1.3:+1228680 | MS.gene64210:CDS |
| TGGAAAATCTCTTGTAAAGG+AGG | 0.556796 | 1.3:+1228644 | MS.gene64210:CDS |
| AAATGGAAAATCTCTTGTAA+AGG | 0.557309 | 1.3:+1228641 | MS.gene64210:CDS |
| ACTTTATAGCATTCATACGC+TGG | 0.570495 | 1.3:-1226788 | None:intergenic |
| AGTAGTTGAAAAGAATAAGC+CGG | 0.571678 | 1.3:+1226808 | MS.gene64210:CDS |
| TGTTTAAACCTGCAACAGGA+GGG | 0.572742 | 1.3:-1228389 | None:intergenic |
| CGAACTCTCACACCCGGTCC+CGG | 0.573418 | 1.3:-1228216 | None:intergenic |
| GTTTAAACCTGCAACAGGAG+GGG | 0.575918 | 1.3:-1228388 | None:intergenic |
| CGTAAACCTGCACCTGCCAA+GGG | 0.577276 | 1.3:+1228237 | MS.gene64210:CDS |
| AACATGAGCCAGAAATTGAT+CGG | 0.579657 | 1.3:+1227311 | MS.gene64210:CDS |
| TCGGAACTAAGGACAAGGGC+GGG | 0.580754 | 1.3:+1227340 | MS.gene64210:CDS |
| TTGTTTAAACCTGCAACAGG+AGG | 0.583194 | 1.3:-1228390 | None:intergenic |
| GTTATTTAAAGCAGCTACAG+AGG | 0.587763 | 1.3:-1228421 | None:intergenic |
| GATAGGATCCTTTCTTACCT+GGG | 0.588549 | 1.3:+1226534 | MS.gene64210:CDS |
| GTGCTAGAGGCAGGAGATGG+GGG | 0.593522 | 1.3:-1228297 | None:intergenic |
| AACTTGTGGTTCTGTAGCAG+CGG | 0.597787 | 1.3:-1228268 | None:intergenic |
| GTAGTTAAACCAGCTATAGG+AGG | 0.599048 | 1.3:-1228480 | None:intergenic |
| TGTGCTAGAGGCAGGAGATG+GGG | 0.599849 | 1.3:-1228298 | None:intergenic |
| TTATTTAAAGCAGCTACAGG+AGG | 0.610125 | 1.3:-1228450 | None:intergenic |
| CTGACTTGAAGTTGTGCTAG+AGG | 0.618717 | 1.3:-1228310 | None:intergenic |
| TTTGTGGTACCCCAAAACAA+AGG | 0.623782 | 1.3:+1227155 | MS.gene64210:CDS |
| TGAAACTTACACAAGCGCCC+AGG | 0.634837 | 1.3:-1226551 | None:intergenic |
| GCTTGTCGGAACTAAGGACA+AGG | 0.640010 | 1.3:+1227335 | MS.gene64210:CDS |
| AGAAATTGATCGGAGCTTGT+CGG | 0.643569 | 1.3:+1227321 | MS.gene64210:CDS |
| TGAACTACCTGAGCGGACTG+AGG | 0.646512 | 1.3:-1227460 | None:intergenic |
| GTCGGAACTAAGGACAAGGG+CGG | 0.652471 | 1.3:+1227339 | MS.gene64210:CDS |
| GGTTTACGAACTCTCACACC+CGG | 0.663395 | 1.3:-1228222 | None:intergenic |
| GAAAGTATTCGGGTTACACG+GGG | 0.677731 | 1.3:+1228681 | MS.gene64210:CDS |
| ATCATAATGAACTACCTGAG+CGG | 0.709859 | 1.3:-1227467 | None:intergenic |
| CTTGTCGGAACTAAGGACAA+GGG | 0.728246 | 1.3:+1227336 | MS.gene64210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTATATACCTTTGTTT+TGG | - | chr1.3:1227169-1227188 | None:intergenic | 15.0% |
| !!! | TAATTATATACCTTTGTTTT+GGG | - | chr1.3:1227168-1227187 | None:intergenic | 15.0% |
| !! | GATATGTTAAGAGAATAAAA+TGG | - | chr1.3:1228135-1228154 | None:intergenic | 20.0% |
| !!! | AATTATATACCTTTGTTTTG+GGG | - | chr1.3:1227167-1227186 | None:intergenic | 20.0% |
| !!! | AGGTATATAATTATTTTCTG+TGG | + | chr1.3:1227175-1227194 | MS.gene64210:intron | 20.0% |
| !!! | TAATGATTTTATTTGTCCTT+TGG | + | chr1.3:1226732-1226751 | MS.gene64210:intron | 20.0% |
| ! | AAATGGAAAATCTCTTGTAA+AGG | + | chr1.3:1228641-1228660 | MS.gene64210:CDS | 25.0% |
| ! | AACAATGAATACTTTCAAGA+TGG | - | chr1.3:1227948-1227967 | None:intergenic | 25.0% |
| ! | ACCTGTTAAATCATTAATCT+AGG | + | chr1.3:1227601-1227620 | MS.gene64210:intron | 25.0% |
| ! | ACTTTGGATATAAGTACTTA+TGG | + | chr1.3:1227532-1227551 | MS.gene64210:intron | 25.0% |
| ! | AGTTCATTATGATTATGCAT+TGG | + | chr1.3:1227477-1227496 | MS.gene64210:intron | 25.0% |
| ! | ATGATAATTGTTTCAGATGA+AGG | - | chr1.3:1228549-1228568 | None:intergenic | 25.0% |
| ! | ATTACATAGCACTGTAATTA+TGG | + | chr1.3:1228055-1228074 | MS.gene64210:intron | 25.0% |
| ! | CAACATGGAAAAATAAAAAC+AGG | - | chr1.3:1226945-1226964 | None:intergenic | 25.0% |
| ! | CCTGTTAAATCATTAATCTA+GGG | + | chr1.3:1227602-1227621 | MS.gene64210:intron | 25.0% |
| ! | TAAAGTTTACCTTTGTGTTA+GGG | + | chr1.3:1227244-1227263 | MS.gene64210:intron | 25.0% |
| ! | TGAATTGAATTCTTCTTGAA+GGG | + | chr1.3:1227092-1227111 | MS.gene64210:intron | 25.0% |
| ! | TGATTAACGATACAAAAACA+TGG | - | chr1.3:1227817-1227836 | None:intergenic | 25.0% |
| ! | TTGAATTGAATTCTTCTTGA+AGG | + | chr1.3:1227091-1227110 | MS.gene64210:intron | 25.0% |
| ! | TTGTTAGTTACAAGTTAAGT+AGG | - | chr1.3:1228101-1228120 | None:intergenic | 25.0% |
| ! | TTTGCATTTCTTCAATATGA+TGG | + | chr1.3:1227221-1227240 | MS.gene64210:intron | 25.0% |
| !! | ATTTGAGTTTGACTTAACTT+TGG | + | chr1.3:1227516-1227535 | MS.gene64210:intron | 25.0% |
| !!! | ATCTTGAAAGTATTCATTGT+TGG | + | chr1.3:1227947-1227966 | MS.gene64210:intron | 25.0% |
| !!! | CCAATTTTTTTGAATCGATA+TGG | + | chr1.3:1226580-1226599 | MS.gene64210:intron | 25.0% |
| !!! | CCATATCGATTCAAAAAAAT+TGG | - | chr1.3:1226583-1226602 | None:intergenic | 25.0% |
| !!! | TGGCATTTTTCATATTTTTG+TGG | + | chr1.3:1227139-1227158 | MS.gene64210:CDS | 25.0% |
| !!! | TTTTTATTTTTCCATGTTGC+AGG | + | chr1.3:1226946-1226965 | MS.gene64210:intron | 25.0% |
| AACTTAGCTTCACAATACAT+TGG | - | chr1.3:1227120-1227139 | None:intergenic | 30.0% | |
| AATGTATTGTGAAGCTAAGT+TGG | + | chr1.3:1227119-1227138 | MS.gene64210:CDS | 30.0% | |
| ACAATATTGCATACCAATAC+TGG | - | chr1.3:1226859-1226878 | None:intergenic | 30.0% | |
| ACTTAGCTTCACAATACATT+GGG | - | chr1.3:1227119-1227138 | None:intergenic | 30.0% | |
| ACTTTCAAGATGGAAAAGAA+AGG | - | chr1.3:1227938-1227957 | None:intergenic | 30.0% | |
| AGTAGTTGAAAAGAATAAGC+CGG | + | chr1.3:1226808-1226827 | MS.gene64210:CDS | 30.0% | |
| ATTCATTGTTGGAGGAAAAT+GGG | + | chr1.3:1227958-1227977 | MS.gene64210:intron | 30.0% | |
| CCCTAGATTAATGATTTAAC+AGG | - | chr1.3:1227605-1227624 | None:intergenic | 30.0% | |
| CTAGGAAACTAACTAATAAC+TGG | + | chr1.3:1227634-1227653 | MS.gene64210:intron | 30.0% | |
| GTAAAGTTTACCTTTGTGTT+AGG | + | chr1.3:1227243-1227262 | MS.gene64210:intron | 30.0% | |
| TATTCATTGTTGGAGGAAAA+TGG | + | chr1.3:1227957-1227976 | MS.gene64210:intron | 30.0% | |
| TGCAACATATGGTTTAAAGA+AGG | - | chr1.3:1227290-1227309 | None:intergenic | 30.0% | |
| TGGTTTAATGATTAGCATTG+TGG | + | chr1.3:1226698-1226717 | MS.gene64210:intron | 30.0% | |
| TGTCTAACAATACAAACACA+TGG | - | chr1.3:1227749-1227768 | None:intergenic | 30.0% | |
| ! | AAATTGAACAGCTTCGATTT+TGG | + | chr1.3:1226831-1226850 | MS.gene64210:CDS | 30.0% |
| ! | ATGGTGATAATGATTAGCAT+TGG | + | chr1.3:1226599-1226618 | MS.gene64210:intron | 30.0% |
| ! | TGGTGATAATGATTAGCATT+GGG | + | chr1.3:1226600-1226619 | MS.gene64210:intron | 30.0% |
| ! | TTATTTGTCCTTTGGTGTAA+TGG | + | chr1.3:1226740-1226759 | MS.gene64210:intron | 30.0% |
| ! | TTGGAGATACTTTTGTATCA+TGG | + | chr1.3:1227003-1227022 | MS.gene64210:CDS | 30.0% |
| !! | GCTGTTGATTCAATATTCTT+TGG | - | chr1.3:1228597-1228616 | None:intergenic | 30.0% |
| !! | GTCATTTTGCTTATCAGAAA+AGG | - | chr1.3:1227680-1227699 | None:intergenic | 30.0% |
| !! | TTGAAAGTATTCATTGTTGG+AGG | + | chr1.3:1227950-1227969 | MS.gene64210:intron | 30.0% |
| AACATGAGCCAGAAATTGAT+CGG | + | chr1.3:1227311-1227330 | MS.gene64210:CDS | 35.0% | |
| AACTTCAAGTCAGTTCCAAA+AGG | + | chr1.3:1228320-1228339 | MS.gene64210:CDS | 35.0% | |
| AATCGAAGCTGTTCAATTTC+CGG | - | chr1.3:1226830-1226849 | None:intergenic | 35.0% | |
| ACTTTATAGCATTCATACGC+TGG | - | chr1.3:1226791-1226810 | None:intergenic | 35.0% | |
| AGATGAAGGATTAGACTTCT+GGG | - | chr1.3:1228535-1228554 | None:intergenic | 35.0% | |
| ATACTTCACGTTTAGCATCA+AGG | - | chr1.3:1226887-1226906 | None:intergenic | 35.0% | |
| ATCATAATGAACTACCTGAG+CGG | - | chr1.3:1227470-1227489 | None:intergenic | 35.0% | |
| CAAGATGGAAAAGAAAGGAA+AGG | - | chr1.3:1227933-1227952 | None:intergenic | 35.0% | |
| CATATTGTAGTGTTCTTTGC+TGG | + | chr1.3:1227897-1227916 | MS.gene64210:intron | 35.0% | |
| CTAAGAAAAACCAGATCAGT+AGG | + | chr1.3:1228708-1228727 | MS.gene64210:CDS | 35.0% | |
| GGAAGTAAAAGAGGAGTTAT+TGG | + | chr1.3:1228341-1228360 | MS.gene64210:CDS | 35.0% | |
| GTTCCAAAAGGAAGTAAAAG+AGG | + | chr1.3:1228332-1228351 | MS.gene64210:CDS | 35.0% | |
| TATGTTGTTCCCTAACACAA+AGG | - | chr1.3:1227256-1227275 | None:intergenic | 35.0% | |
| TCTCAAAGAGCTGTTAGTTA+CGG | + | chr1.3:1227382-1227401 | MS.gene64210:CDS | 35.0% | |
| TGAGTAGTTAAACCAGCTAT+AGG | - | chr1.3:1228486-1228505 | None:intergenic | 35.0% | |
| TGGAAAATCTCTTGTAAAGG+AGG | + | chr1.3:1228644-1228663 | MS.gene64210:CDS | 35.0% | |
| TGTTTGTTTAAACCTGCAAC+AGG | - | chr1.3:1228396-1228415 | None:intergenic | 35.0% | |
| ! | AAGTCTTATCCCACTAAGTA+GGG | - | chr1.3:1226663-1226682 | None:intergenic | 35.0% |
| ! | ACTCCTCTTTTACTTCCTTT+TGG | - | chr1.3:1228338-1228357 | None:intergenic | 35.0% |
| ! | GATAATGATTAGCATTGGGA+TGG | + | chr1.3:1226604-1226623 | MS.gene64210:intron | 35.0% |
| ! | GGTATGCATTAAGTTGTATG+TGG | - | chr1.3:1227584-1227603 | None:intergenic | 35.0% |
| ! | GTTATTTAAAGCAGCTACAG+AGG | - | chr1.3:1228424-1228443 | None:intergenic | 35.0% |
| ! | TGGTTATTTAAAGCAGCTAC+AGG | - | chr1.3:1228426-1228445 | None:intergenic | 35.0% |
| ! | TTATTTAAAGCAGCTACAGG+AGG | - | chr1.3:1228453-1228472 | None:intergenic | 35.0% |
| ! | TTTTCCATGTTGCAGGATTT+TGG | + | chr1.3:1226953-1226972 | MS.gene64210:intron | 35.0% |
| !! | AAGAAAGTATTCGGGTTACA+CGG | + | chr1.3:1228679-1228698 | MS.gene64210:CDS | 35.0% |
| !! | CAGAATGGAAGAAAGTATTC+GGG | + | chr1.3:1228671-1228690 | MS.gene64210:CDS | 35.0% |
| !! | CCAGAATGGAAGAAAGTATT+CGG | + | chr1.3:1228670-1228689 | MS.gene64210:CDS | 35.0% |
| ACTAAGTAGGGTCAGCTAAA+TGG | - | chr1.3:1226651-1226670 | None:intergenic | 40.0% | |
| AGAAATTGATCGGAGCTTGT+CGG | + | chr1.3:1227321-1227340 | MS.gene64210:CDS | 40.0% | |
| ATAGCATTCATACGCTGGAT+AGG | - | chr1.3:1226786-1226805 | None:intergenic | 40.0% | |
| ATGACAGTGTGTGAGAGATT+TGG | + | chr1.3:1226984-1227003 | MS.gene64210:CDS | 40.0% | |
| ATTTAGCTGACCCTACTTAG+TGG | + | chr1.3:1226650-1226669 | MS.gene64210:intron | 40.0% | |
| CAGATGAAGGATTAGACTTC+TGG | - | chr1.3:1228536-1228555 | None:intergenic | 40.0% | |
| CCGAATACTTTCTTCCATTC+TGG | - | chr1.3:1228673-1228692 | None:intergenic | 40.0% | |
| CTACTTAGTGGGATAAGACT+TGG | + | chr1.3:1226662-1226681 | MS.gene64210:intron | 40.0% | |
| GATAGGATCCTTTCTTACCT+GGG | + | chr1.3:1226534-1226553 | MS.gene64210:CDS | 40.0% | |
| GTAGTTAAACCAGCTATAGG+AGG | - | chr1.3:1228483-1228502 | None:intergenic | 40.0% | |
| TACAAGTTAAGTAGGTTGCC+AGG | - | chr1.3:1228093-1228112 | None:intergenic | 40.0% | |
| TCCTCTTCAGCAACTGAAAA+TGG | + | chr1.3:1228624-1228643 | MS.gene64210:CDS | 40.0% | |
| TGATAGGATCCTTTCTTACC+TGG | + | chr1.3:1226533-1226552 | MS.gene64210:CDS | 40.0% | |
| TGTTTAAACCTGCAACAGGA+GGG | - | chr1.3:1228392-1228411 | None:intergenic | 40.0% | |
| TTATGGCAACAACAACAACC+TGG | + | chr1.3:1228072-1228091 | MS.gene64210:intron | 40.0% | |
| TTGGAGGAAAATGGGAGAAA+GGG | + | chr1.3:1227966-1227985 | MS.gene64210:intron | 40.0% | |
| TTGTTTAAACCTGCAACAGG+AGG | - | chr1.3:1228393-1228412 | None:intergenic | 40.0% | |
| TTTAGCTGACCCTACTTAGT+GGG | + | chr1.3:1226651-1226670 | MS.gene64210:intron | 40.0% | |
| TTTGTGGTACCCCAAAACAA+AGG | + | chr1.3:1227155-1227174 | MS.gene64210:CDS | 40.0% | |
| ! | AATCTAGGGCGATTTGAACT+AGG | + | chr1.3:1227616-1227635 | MS.gene64210:intron | 40.0% |
| ! | ATTTTCAGTTGCTGAAGAGG+AGG | - | chr1.3:1228625-1228644 | None:intergenic | 40.0% |
| ! | CAAGTCTTATCCCACTAAGT+AGG | - | chr1.3:1226664-1226683 | None:intergenic | 40.0% |
| ! | GGCTCATGTTTTGCAACATA+TGG | - | chr1.3:1227301-1227320 | None:intergenic | 40.0% |
| ! | TCCATTTTCAGTTGCTGAAG+AGG | - | chr1.3:1228628-1228647 | None:intergenic | 40.0% |
| !! | AGAAAGTATTCGGGTTACAC+GGG | + | chr1.3:1228680-1228699 | MS.gene64210:CDS | 40.0% |
| !!! | TGTAATGGCAGGAGTGTTTT+TGG | + | chr1.3:1226755-1226774 | MS.gene64210:intron | 40.0% |
| !!! | TTCGATTTTGGTGCCAGTAT+TGG | + | chr1.3:1226843-1226862 | MS.gene64210:CDS | 40.0% |
| CTTGAAATTGCAGCAACGAC+CGG | + | chr1.3:1228197-1228216 | MS.gene64210:intron | 45.0% | |
| CTTGTCGGAACTAAGGACAA+GGG | + | chr1.3:1227336-1227355 | MS.gene64210:CDS | 45.0% | |
| GACAAGCTCCGATCAATTTC+TGG | - | chr1.3:1227322-1227341 | None:intergenic | 45.0% | |
| GCAACCAAAATCCTGCAACA+TGG | - | chr1.3:1226960-1226979 | None:intergenic | 45.0% | |
| GTTGGAGGAAAATGGGAGAA+AGG | + | chr1.3:1227965-1227984 | MS.gene64210:intron | 45.0% | |
| GTTTAAACCTGCAACAGGAG+GGG | - | chr1.3:1228391-1228410 | None:intergenic | 45.0% | |
| TGTAAAGGAGGAGACCAGAA+TGG | + | chr1.3:1228656-1228675 | MS.gene64210:CDS | 45.0% | |
| TTGAAATTGCAGCAACGACC+GGG | + | chr1.3:1228198-1228217 | MS.gene64210:intron | 45.0% | |
| ! | AACTTGTGGTTCTGTAGCAG+CGG | - | chr1.3:1228271-1228290 | None:intergenic | 45.0% |
| ! | CTGACTTGAAGTTGTGCTAG+AGG | - | chr1.3:1228313-1228332 | None:intergenic | 45.0% |
| ! | GACTTGGTTGTTGTTGTGTC+TGG | + | chr1.3:1226678-1226697 | MS.gene64210:intron | 45.0% |
| ! | TTGTCCTTTGGTGTAATGGC+AGG | + | chr1.3:1226744-1226763 | MS.gene64210:intron | 45.0% |
| !! | GAAAGTATTCGGGTTACACG+GGG | + | chr1.3:1228681-1228700 | MS.gene64210:CDS | 45.0% |
| AACCAGAAGCCTCCTATAGC+TGG | + | chr1.3:1228471-1228490 | MS.gene64210:CDS | 50.0% | |
| AACCAGCTATAGGAGGCTTC+TGG | - | chr1.3:1228476-1228495 | None:intergenic | 50.0% | |
| ATCGGAGCTTGTCGGAACTA+AGG | + | chr1.3:1227329-1227348 | MS.gene64210:CDS | 50.0% | |
| CACTCCTGCCATTACACCAA+AGG | - | chr1.3:1226751-1226770 | None:intergenic | 50.0% | |
| CTACTGGGTTCCTACTGATC+TGG | - | chr1.3:1228721-1228740 | None:intergenic | 50.0% | |
| CTTGAAGTTGTGCTAGAGGC+AGG | - | chr1.3:1228309-1228328 | None:intergenic | 50.0% | |
| GATGGGGGTTCTTCAACTTG+TGG | - | chr1.3:1228285-1228304 | None:intergenic | 50.0% | |
| GCTTGTCGGAACTAAGGACA+AGG | + | chr1.3:1227335-1227354 | MS.gene64210:CDS | 50.0% | |
| GGTTTACGAACTCTCACACC+CGG | - | chr1.3:1228225-1228244 | None:intergenic | 50.0% | |
| TGAAACTTACACAAGCGCCC+AGG | - | chr1.3:1226554-1226573 | None:intergenic | 50.0% | |
| TTGTGCTAGAGGCAGGAGAT+GGG | - | chr1.3:1228302-1228321 | None:intergenic | 50.0% | |
| AAAGTAGCCCCTCCTGTTGC+AGG | + | chr1.3:1228381-1228400 | MS.gene64210:CDS | 55.0% | |
| AAGCAGCTACAGGAGGCTTC+TGG | - | chr1.3:1228446-1228465 | None:intergenic | 55.0% | |
| CACAAGCGCCCAGGTAAGAA+AGG | - | chr1.3:1226545-1226564 | None:intergenic | 55.0% | |
| CGTAAACCTGCACCTGCCAA+GGG | + | chr1.3:1228237-1228256 | MS.gene64210:CDS | 55.0% | |
| GTCGGAACTAAGGACAAGGG+CGG | + | chr1.3:1227339-1227358 | MS.gene64210:CDS | 55.0% | |
| GTTGTGCTAGAGGCAGGAGA+TGG | - | chr1.3:1228303-1228322 | None:intergenic | 55.0% | |
| TCGGAACTAAGGACAAGGGC+GGG | + | chr1.3:1227340-1227359 | MS.gene64210:CDS | 55.0% | |
| TCGTAAACCTGCACCTGCCA+AGG | + | chr1.3:1228236-1228255 | MS.gene64210:CDS | 55.0% | |
| TGTGCTAGAGGCAGGAGATG+GGG | - | chr1.3:1228301-1228320 | None:intergenic | 55.0% | |
| ! | GCAACAGGAGGGGCTACTTT+AGG | - | chr1.3:1228381-1228400 | None:intergenic | 55.0% |
| ! | GGGGCTACTTTAGGAGCTTG+TGG | - | chr1.3:1228372-1228391 | None:intergenic | 55.0% |
| !! | TGAACTACCTGAGCGGACTG+AGG | - | chr1.3:1227463-1227482 | None:intergenic | 55.0% |
| ATTGCAGCAACGACCGGGAC+CGG | + | chr1.3:1228203-1228222 | MS.gene64210:intron | 60.0% | |
| GTGCTAGAGGCAGGAGATGG+GGG | - | chr1.3:1228300-1228319 | None:intergenic | 60.0% | |
| GTTCTGTAGCAGCGGCTGGT+TGG | - | chr1.3:1228263-1228282 | None:intergenic | 60.0% | |
| ! | TGTGGTTCTGTAGCAGCGGC+TGG | - | chr1.3:1228267-1228286 | None:intergenic | 60.0% |
| ACCAGCACCTCAGTCCGCTC+AGG | + | chr1.3:1227453-1227472 | MS.gene64210:CDS | 65.0% | |
| CGAACTCTCACACCCGGTCC+CGG | - | chr1.3:1228219-1228238 | None:intergenic | 65.0% | |
| TTGCAGCAACGACCGGGACC+GGG | + | chr1.3:1228204-1228223 | MS.gene64210:intron | 65.0% | |
| !! | ACCTGAGCGGACTGAGGTGC+TGG | - | chr1.3:1227457-1227476 | None:intergenic | 65.0% |
| ! | AGCAGCGGCTGGTTGGCCCT+TGG | - | chr1.3:1228256-1228275 | None:intergenic | 70.0% |
| ! | GGTTGGCCCTTGGCAGGTGC+AGG | - | chr1.3:1228246-1228265 | None:intergenic | 70.0% |
| ! | GCGGCTGGTTGGCCCTTGGC+AGG | - | chr1.3:1228252-1228271 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 1226532 | 1228740 | 1226532 | ID=MS.gene64210 |
| chr1.3 | mRNA | 1226532 | 1228740 | 1226532 | ID=MS.gene64210.t1;Parent=MS.gene64210 |
| chr1.3 | exon | 1226532 | 1226563 | 1226532 | ID=MS.gene64210.t1.exon1;Parent=MS.gene64210.t1 |
| chr1.3 | CDS | 1226532 | 1226563 | 1226532 | ID=cds.MS.gene64210.t1;Parent=MS.gene64210.t1 |
| chr1.3 | exon | 1226766 | 1226864 | 1226766 | ID=MS.gene64210.t1.exon2;Parent=MS.gene64210.t1 |
| chr1.3 | CDS | 1226766 | 1226864 | 1226766 | ID=cds.MS.gene64210.t1;Parent=MS.gene64210.t1 |
| chr1.3 | exon | 1226968 | 1227024 | 1226968 | ID=MS.gene64210.t1.exon3;Parent=MS.gene64210.t1 |
| chr1.3 | CDS | 1226968 | 1227024 | 1226968 | ID=cds.MS.gene64210.t1;Parent=MS.gene64210.t1 |
| chr1.3 | exon | 1227113 | 1227176 | 1227113 | ID=MS.gene64210.t1.exon4;Parent=MS.gene64210.t1 |
| chr1.3 | CDS | 1227113 | 1227176 | 1227113 | ID=cds.MS.gene64210.t1;Parent=MS.gene64210.t1 |
| chr1.3 | exon | 1227265 | 1227474 | 1227265 | ID=MS.gene64210.t1.exon5;Parent=MS.gene64210.t1 |
| chr1.3 | CDS | 1227265 | 1227474 | 1227265 | ID=cds.MS.gene64210.t1;Parent=MS.gene64210.t1 |
| chr1.3 | exon | 1228210 | 1228740 | 1228210 | ID=MS.gene64210.t1.exon6;Parent=MS.gene64210.t1 |
| chr1.3 | CDS | 1228210 | 1228740 | 1228210 | ID=cds.MS.gene64210.t1;Parent=MS.gene64210.t1 |
| Gene Sequence |
| Protein sequence |
