AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64881


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64881.t1 MTR_5g024130 98.930 374 4 0 1 374 20 393 0.0 773
MS.gene64881.t1 MTR_4g087440 98.396 374 6 0 1 374 20 393 0.0 769
MS.gene64881.t1 MTR_1g029150 71.976 339 91 2 40 374 52 390 0.0 524
MS.gene64881.t1 MTR_3g090100 63.920 352 115 4 27 374 23 366 1.01e-167 473
MS.gene64881.t1 MTR_3g089025 65.192 339 115 2 38 374 32 369 2.04e-167 472
MS.gene64881.t1 MTR_3g090020 63.429 350 120 3 27 374 23 366 2.19e-165 467
MS.gene64881.t1 MTR_3g090010 65.373 335 113 2 40 372 35 368 3.29e-164 464
MS.gene64881.t1 MTR_3g090110 40.171 117 47 1 218 334 2 95 6.96e-22 89.7
MS.gene64881.t1 MTR_3g089980 47.423 97 38 1 238 334 7 90 1.31e-21 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64881.t1 AT2G43710 83.511 376 58 1 3 374 26 401 0.0 666
MS.gene64881.t1 AT2G43710 83.245 376 59 1 3 374 26 401 0.0 664
MS.gene64881.t1 AT3G02630 79.946 369 73 1 5 372 26 394 0.0 634
MS.gene64881.t1 AT5G16240 76.944 360 80 2 14 372 35 392 0.0 592
MS.gene64881.t1 AT3G02610 69.554 381 108 4 2 374 31 411 0.0 544
MS.gene64881.t1 AT3G02610 69.554 381 108 4 2 374 33 413 0.0 543
MS.gene64881.t1 AT5G16230 72.857 350 91 3 29 374 52 401 0.0 535
MS.gene64881.t1 AT3G02620 68.074 379 109 4 2 374 34 406 0.0 533
MS.gene64881.t1 AT3G02620 68.074 379 109 4 2 374 31 403 0.0 532
MS.gene64881.t1 AT1G43800 66.935 372 116 4 6 372 20 389 0.0 519
MS.gene64881.t1 AT5G16230 74.154 325 80 3 54 374 1 325 3.33e-180 503
MS.gene64881.t1 AT3G02620 72.783 327 83 3 54 374 1 327 1.21e-177 496

Find 120 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGAAAATTTCAATCTTT+TGG 0.153941 5.3:+13985164 None:intergenic
TGCTGATATACTTGAGTTTC+TGG 0.154020 5.3:-13984060 MS.gene64881:CDS
TCCTCCAGCCTTCTGATTCT+TGG 0.181095 5.3:+13983957 None:intergenic
AACACTTCTCCACGGGTTTA+AGG 0.187557 5.3:+13985104 None:intergenic
GCCCTACTCCCTGGGCTATT+TGG 0.216121 5.3:-13984883 MS.gene64881:CDS
GGTGGAAGCCATGAGGAATT+TGG 0.217183 5.3:+13986368 None:intergenic
GCCGACATAACGGGACTTTC+AGG 0.282345 5.3:-13984020 MS.gene64881:CDS
CATTCAGTTGGATTCATGAT+AGG 0.310680 5.3:-13983896 MS.gene64881:CDS
TACTTGAACATGCACTTCTC+TGG 0.313192 5.3:+13985204 None:intergenic
GGGTTTAAGGTGGGTCAATA+AGG 0.327886 5.3:+13985117 None:intergenic
CCAAACTATGCTTAATACTT+TGG 0.328282 5.3:-13984933 MS.gene64881:CDS
TTAAGCATAGTTTGGTAAGT+AGG 0.345744 5.3:+13984941 None:intergenic
AGATGACTACTTTGTTGTTC+TGG 0.348048 5.3:-13984993 MS.gene64881:CDS
AATCCAACTGAATGCAAGTT+TGG 0.355409 5.3:+13983905 None:intergenic
CCAAAGTATTAAGCATAGTT+TGG 0.366292 5.3:+13984933 None:intergenic
TGTTGTTCTGGTTGGAGATA+TGG 0.377751 5.3:-13984981 MS.gene64881:CDS
GTGGAAGCCATGAGGAATTT+GGG 0.381387 5.3:+13986369 None:intergenic
AACAAGTATCTTTACTTGTC+CGG 0.381953 5.3:-13984815 MS.gene64881:CDS
CTGCCTGATCCTTCCACAGA+TGG 0.385958 5.3:-13985064 MS.gene64881:CDS
AAGACAATTCAGTACTTGAT+TGG 0.388415 5.3:-13984767 MS.gene64881:CDS
AAAGATAGTGGAAAAGCTAT+TGG 0.403395 5.3:-13984240 MS.gene64881:CDS
TTTCAAATCGTTGGACGGTT+GGG 0.409114 5.3:-13985149 MS.gene64881:CDS
ATTCAGTACTTGATTGGCTC+TGG 0.422057 5.3:-13984761 MS.gene64881:CDS
ATGGCTTCCACCCTCCGTTC+TGG 0.424747 5.3:-13986357 MS.gene64881:CDS
CATCCAAACTTGCATTCAGT+TGG 0.428488 5.3:-13983908 MS.gene64881:CDS
GACGGGGTTCGTGATGAAAC+AGG 0.435583 5.3:-13984911 MS.gene64881:CDS
GATATACTTGAGTTTCTGGT+TGG 0.441237 5.3:-13984056 MS.gene64881:CDS
AATCCATCTGTGGAAGGATC+AGG 0.446897 5.3:+13985061 None:intergenic
TCCAAATAGCCCAGGGAGTA+GGG 0.449927 5.3:+13984882 None:intergenic
AGAACAACAAAGTAGTCATC+TGG 0.454468 5.3:+13984995 None:intergenic
TGTGTTTCCATGCGATATAA+AGG 0.456327 5.3:+13984355 None:intergenic
CAGGTGCCAGCCCTACTCCC+TGG 0.456573 5.3:-13984892 MS.gene64881:CDS
CAGCAGAATAGTTATCAAAC+AGG 0.457192 5.3:+13984120 None:intergenic
ATATACTTGAGTTTCTGGTT+GGG 0.460993 5.3:-13984055 MS.gene64881:CDS
TGGAAGGTGGCCGACATAAC+GGG 0.461245 5.3:-13984029 MS.gene64881:CDS
TCCAGCCTTCTGATTCTTGG+TGG 0.465016 5.3:+13983960 None:intergenic
ACCGCGTTCCTTAGCAAGCC+TGG 0.468561 5.3:+13984331 None:intergenic
TCTGCTGTTGCCCAGCGCAT+TGG 0.472536 5.3:-13984104 MS.gene64881:CDS
CAGTGTAGACTCCAATGCGC+TGG 0.478141 5.3:+13984093 None:intergenic
GTGTAGATAAAGCCAAGGTA+AGG 0.480370 5.3:+13984398 None:intergenic
GTTTCTGGTTGGGAGGTGGA+AGG 0.480811 5.3:-13984045 MS.gene64881:CDS
TACTTGAGTTTCTGGTTGGG+AGG 0.483685 5.3:-13984052 MS.gene64881:CDS
TATCGCATGGAAACACAGCC+AGG 0.484282 5.3:-13984349 MS.gene64881:CDS
GACTACTTTGTTGTTCTGGT+TGG 0.487848 5.3:-13984989 MS.gene64881:CDS
AGAGGTTGAAAATATTAAGA+AGG 0.489403 5.3:-13985239 MS.gene64881:CDS
CTATGCTTAATACTTTGGAC+GGG 0.489694 5.3:-13984928 MS.gene64881:CDS
AAGGCACAGGAGTATGTTTG+TGG 0.492271 5.3:-13983987 MS.gene64881:CDS
AAAGCAATAACTGTTCCATC+AGG 0.503808 5.3:+13984209 None:intergenic
TTGAGTTTCTGGTTGGGAGG+TGG 0.503890 5.3:-13984049 MS.gene64881:CDS
ATCGTTGGACGGTTGGGCTG+AGG 0.504685 5.3:-13985143 MS.gene64881:CDS
GACTGCTTACACAAAGATAG+TGG 0.506240 5.3:-13984252 MS.gene64881:CDS
CCATCATACATCAGGTGTGC+TGG 0.507354 5.3:+13984155 None:intergenic
ATTCAGTTGGATTCATGATA+GGG 0.509293 5.3:-13983895 MS.gene64881:CDS
TATCAAACAGGTTGTTGTCT+CGG 0.511161 5.3:+13984132 None:intergenic
GTGGAAGGTGGCCGACATAA+CGG 0.512885 5.3:-13984030 MS.gene64881:CDS
TGCCCTTGTCCAAATAGCCC+AGG 0.513839 5.3:+13984874 None:intergenic
ACTATGCTTAATACTTTGGA+CGG 0.515306 5.3:-13984929 MS.gene64881:CDS
GGAACGCGGTGATTTGAAGT+TGG 0.515541 5.3:-13984318 MS.gene64881:CDS
GTCCAAATAGCCCAGGGAGT+AGG 0.517699 5.3:+13984881 None:intergenic
CTCCCTGGGCTATTTGGACA+AGG 0.522312 5.3:-13984877 MS.gene64881:CDS
AGGTGCCAGCCCTACTCCCT+GGG 0.525825 5.3:-13984891 MS.gene64881:CDS
CTACACTTCATTTCAAGAGA+GGG 0.526696 5.3:-13984381 MS.gene64881:CDS
AATAGCCCAGGGAGTAGGGC+TGG 0.527579 5.3:+13984886 None:intergenic
TGTCTCGGCCATCATACATC+AGG 0.527663 5.3:+13984147 None:intergenic
GGAGAAGTGTTGGCAACCAC+AGG 0.529444 5.3:-13985092 MS.gene64881:CDS
GTACTTGATTGGCTCTGGAA+TGG 0.532321 5.3:-13984756 MS.gene64881:intron
GGGCTATTTGGACAAGGGCA+TGG 0.532896 5.3:-13984871 MS.gene64881:CDS
TTGTCTCATATCAACACGTC+CGG 0.538054 5.3:+13984796 None:intergenic
ACTTGAACATGCACTTCTCT+GGG 0.540588 5.3:+13985205 None:intergenic
GCCACCAAGAATCAGAAGGC+TGG 0.541195 5.3:-13983961 MS.gene64881:CDS
GGTTGCCAACACTTCTCCAC+GGG 0.546156 5.3:+13985097 None:intergenic
TGGTTGCCAACACTTCTCCA+CGG 0.546764 5.3:+13985096 None:intergenic
AGGTGAGGGACGAAAGGCAC+AGG 0.547789 5.3:-13984000 MS.gene64881:CDS
TTGAAGTTGGCTCAGATCTG+TGG 0.557237 5.3:-13984305 MS.gene64881:CDS
TCTGGTTGGGAGGTGGAAGG+TGG 0.560034 5.3:-13984042 MS.gene64881:CDS
AGGGCGACCTTTATATCGCA+TGG 0.560815 5.3:-13984362 MS.gene64881:CDS
ACCTGAAAGTCCCGTTATGT+CGG 0.568218 5.3:+13984019 None:intergenic
CAGATCTCCCAAATTCCTCA+TGG 0.570557 5.3:-13986376 MS.gene64881:CDS
AGTGTAGACTCCAATGCGCT+GGG 0.573443 5.3:+13984094 None:intergenic
AAGTGAAGGAACTGAGAGAG+AGG 0.573671 5.3:-13985030 MS.gene64881:CDS
AGGCACAGGAGTATGTTTGT+GGG 0.574102 5.3:-13983986 MS.gene64881:CDS
AAGTATATCAGCATAGTCCT+TGG 0.575108 5.3:+13984070 None:intergenic
ACTTCTCCACGGGTTTAAGG+TGG 0.576441 5.3:+13985107 None:intergenic
GAATTTGGGAGATCTGAGAC+TGG 0.578274 5.3:+13986383 None:intergenic
TCTACACTTCATTTCAAGAG+AGG 0.581234 5.3:-13984382 MS.gene64881:CDS
GAGAGCTTCAGCAAGAGCAA+AGG 0.595934 5.3:-13983934 MS.gene64881:CDS
AAACACAGCCAGGCTTGCTA+AGG 0.597013 5.3:-13984339 MS.gene64881:CDS
TGTAGATAAAGCCAAGGTAA+GGG 0.598444 5.3:+13984399 None:intergenic
TTAAACCCGTGGAGAAGTGT+TGG 0.603294 5.3:-13985102 MS.gene64881:CDS
TCTTCGAATCCATCTGTGGA+AGG 0.607545 5.3:+13985055 None:intergenic
ACTTTCAGGTGAGGGACGAA+AGG 0.610348 5.3:-13984006 MS.gene64881:CDS
CCAGCACACCTGATGTATGA+TGG 0.611997 5.3:-13984155 MS.gene64881:CDS
AATTTGATGGATAGGATCCT+CGG 0.612128 5.3:-13984433 MS.gene64881:intron
CTATTGGAGATTGATCCTGA+TGG 0.612852 5.3:-13984224 MS.gene64881:CDS
ACAGAGAATAGCCCTTACCT+TGG 0.614469 5.3:-13984410 MS.gene64881:CDS
GCCCTTGTCCAAATAGCCCA+GGG 0.621824 5.3:+13984875 None:intergenic
TTGCTCTTCGAATCCATCTG+TGG 0.623765 5.3:+13985051 None:intergenic
AGTGAAGGAACTGAGAGAGA+GGG 0.623958 5.3:-13985029 MS.gene64881:CDS
CTTCTCCACGGGTTTAAGGT+GGG 0.626770 5.3:+13985108 None:intergenic
TGACTTGGAACCAGAACGGA+GGG 0.629360 5.3:+13986347 None:intergenic
ATGAAGTGTAGATAAAGCCA+AGG 0.630791 5.3:+13984393 None:intergenic
TCTTTGTGTAAGCAGTCTCA+TGG 0.635579 5.3:+13984258 None:intergenic
ATTGACCCACCTTAAACCCG+TGG 0.636622 5.3:-13985113 MS.gene64881:CDS
CTTGGAACCAGAACGGAGGG+TGG 0.638218 5.3:+13986350 None:intergenic
GCCAGGCTTGCTAAGGAACG+CGG 0.638241 5.3:-13984332 MS.gene64881:CDS
TGGATTCGAAGAGCAAGTGA+AGG 0.638840 5.3:-13985044 MS.gene64881:CDS
CATTGGAGTCTACACTGCCA+AGG 0.641019 5.3:-13984087 MS.gene64881:CDS
GGTTGCCACCAAGAATCAGA+AGG 0.645168 5.3:-13983965 MS.gene64881:CDS
TATGCTTAATACTTTGGACG+GGG 0.647926 5.3:-13984927 MS.gene64881:CDS
ATAACGGGACTTTCAGGTGA+GGG 0.651545 5.3:-13984014 MS.gene64881:CDS
TCCCTGGGCTATTTGGACAA+GGG 0.661918 5.3:-13984876 MS.gene64881:CDS
ACCAAGAATCAGAAGGCTGG+AGG 0.675099 5.3:-13983958 MS.gene64881:CDS
TTACTGACTTGGAACCAGAA+CGG 0.677723 5.3:+13986343 None:intergenic
TAAGGGCTATTCTCTGTCCG+AGG 0.682265 5.3:+13984416 None:intergenic
AACGGAGGGTGGAAGCCATG+AGG 0.693929 5.3:+13986361 None:intergenic
CATAACGGGACTTTCAGGTG+AGG 0.697665 5.3:-13984015 MS.gene64881:CDS
TGAACATGCACTTCTCTGGG+AGG 0.699562 5.3:+13985208 None:intergenic
CTGACTTGGAACCAGAACGG+AGG 0.718153 5.3:+13986346 None:intergenic
GGATCAGGCAGAAAATCCTG+TGG 0.729854 5.3:+13985076 None:intergenic
ACAGCTGAAGAAAATAGACA+CGG 0.759947 5.3:-13984848 MS.gene64881:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAAAAAAAAAAAAG+TGG + chr5.3:13984207-13984226 None:intergenic 10.0%
!!! AATATCATTATTTTTTTAAC+AGG + chr5.3:13984916-13984935 None:intergenic 10.0%
!!! GTATAATCAATTATAAATTT+TGG - chr5.3:13984403-13984422 MS.gene64881:CDS 10.0%
!! AATTTATTATGAAACTAACT+AGG + chr5.3:13985544-13985563 None:intergenic 15.0%
!! TAAATTATTACTATCATTCA+TGG + chr5.3:13984872-13984891 None:intergenic 15.0%
!!! ATTTGAAAATTTCAATCTTT+TGG + chr5.3:13985107-13985126 None:intergenic 15.0%
!!! TTTCATATTATCATTTGTTA+TGG - chr5.3:13984173-13984192 MS.gene64881:CDS 15.0%
!!! TTTGAAAATTTCAATCTTTT+GGG + chr5.3:13985106-13985125 None:intergenic 15.0%
!! AAAAATACTGAACTTAATTC+TGG - chr5.3:13984612-13984631 MS.gene64881:intron 20.0%
!! AAATTCCCAAATTGAATTTA+TGG + chr5.3:13984344-13984363 None:intergenic 20.0%
!! AAGATGAAATGAAAAAGTAA+GGG + chr5.3:13983957-13983976 None:intergenic 20.0%
!! ATAATGATATTAATACAGTC+TGG - chr5.3:13984925-13984944 MS.gene64881:CDS 20.0%
!! GATGATCATAAAAAAAGAAT+CGG + chr5.3:13984716-13984735 None:intergenic 20.0%
!! TTTGTGATATGATATTGAAA+TGG - chr5.3:13984039-13984058 MS.gene64881:CDS 20.0%
!!! GTTTTTTTGATTGTATTCTA+TGG - chr5.3:13984286-13984305 MS.gene64881:CDS 20.0%
!!! TATAAATTTTGGAACTTGTT+GGG - chr5.3:13984414-13984433 MS.gene64881:CDS 20.0%
!!! TGTTTATATCTCTCTAATTT+TGG - chr5.3:13985804-13985823 MS.gene64881:intron 20.0%
!!! TTATAAATTTTGGAACTTGT+TGG - chr5.3:13984413-13984432 MS.gene64881:CDS 20.0%
!!! TTGAAAATTTCAATCTTTTG+GGG + chr5.3:13985105-13985124 None:intergenic 20.0%
!!! TTTTTTATGATCATCTACAT+GGG - chr5.3:13984721-13984740 MS.gene64881:intron 20.0%
!!! TTTTTTTATGATCATCTACA+TGG - chr5.3:13984720-13984739 MS.gene64881:intron 20.0%
! AAAAAAAGAATCGGTAAACA+TGG + chr5.3:13984707-13984726 None:intergenic 25.0%
! ACTTCACCATAAATTCAATT+TGG - chr5.3:13984335-13984354 MS.gene64881:CDS 25.0%
! AGAGGTTGAAAATATTAAGA+AGG - chr5.3:13985029-13985048 MS.gene64881:CDS 25.0%
! AGTTCATCAAAATGACAATT+TGG + chr5.3:13984822-13984841 None:intergenic 25.0%
! CATAATCATGCAAATGTTAA+AGG - chr5.3:13985565-13985584 MS.gene64881:intron 25.0%
! CTTCACCATAAATTCAATTT+GGG - chr5.3:13984336-13984355 MS.gene64881:CDS 25.0%
! CTTTAACATTTGCATGATTA+TGG + chr5.3:13985567-13985586 None:intergenic 25.0%
! GAAGATGAAATGAAAAAGTA+AGG + chr5.3:13983958-13983977 None:intergenic 25.0%
! TTAATCAATCAAATCACTAG+AGG + chr5.3:13984760-13984779 None:intergenic 25.0%
! TTGATTAACCTATGCATTTA+TGG - chr5.3:13984772-13984791 MS.gene64881:CDS 25.0%
!! GATTGAAATTTTCAAATCGT+TGG - chr5.3:13985110-13985129 MS.gene64881:CDS 25.0%
!! GTGAATTTGATAACTGTTTA+CGG - chr5.3:13984518-13984537 MS.gene64881:intron 25.0%
!! TTTTATATTACTTTGCAGAG+AGG - chr5.3:13985011-13985030 MS.gene64881:CDS 25.0%
!!! TGTTTTGAATTTCTAGAACA+AGG - chr5.3:13985716-13985735 MS.gene64881:intron 25.0%
!!! TTTTTTTTTTCCTTCTTTGC+AGG - chr5.3:13984079-13984098 MS.gene64881:CDS 25.0%
AACAAGTATCTTTACTTGTC+CGG - chr5.3:13985453-13985472 MS.gene64881:intron 30.0%
AAGACAATTCAGTACTTGAT+TGG - chr5.3:13985501-13985520 MS.gene64881:intron 30.0%
ACTATGCTTAATACTTTGGA+CGG - chr5.3:13985339-13985358 MS.gene64881:intron 30.0%
AGTATAAACGTATATTCCCT+AGG - chr5.3:13984310-13984329 MS.gene64881:CDS 30.0%
ATTCAGTTGGATTCATGATA+GGG - chr5.3:13986373-13986392 MS.gene64881:CDS 30.0%
CAAACGTAAGGTCATTTAAA+TGG - chr5.3:13984962-13984981 MS.gene64881:CDS 30.0%
CCAAACTATGCTTAATACTT+TGG - chr5.3:13985335-13985354 MS.gene64881:intron 30.0%
GAAATGAAAAAGTAAGGGAA+GGG + chr5.3:13983952-13983971 None:intergenic 30.0%
TAAATCAATTCGCAAACGTA+AGG - chr5.3:13984950-13984969 MS.gene64881:CDS 30.0%
TACAGAGAATGTGCTTAAAA+TGG - chr5.3:13985623-13985642 MS.gene64881:intron 30.0%
TGAAATGAAAAAGTAAGGGA+AGG + chr5.3:13983953-13983972 None:intergenic 30.0%
TGAGTCAAGAATGAATTTCA+TGG + chr5.3:13985750-13985769 None:intergenic 30.0%
TGATAACTGTTTACGGAAAT+TGG - chr5.3:13984525-13984544 MS.gene64881:intron 30.0%
TTAAGCATAGTTTGGTAAGT+AGG + chr5.3:13985330-13985349 None:intergenic 30.0%
! CCAAAGTATTAAGCATAGTT+TGG + chr5.3:13985338-13985357 None:intergenic 30.0%
! GAAATTTTCAAATCGTTGGA+CGG - chr5.3:13985114-13985133 MS.gene64881:CDS 30.0%
! TTTACCCTATGTTTTTCTCT+AGG - chr5.3:13984257-13984276 MS.gene64881:CDS 30.0%
!! AAAATTTCAATCTTTTGGGG+AGG + chr5.3:13985102-13985121 None:intergenic 30.0%
!! AAAGATAGTGGAAAAGCTAT+TGG - chr5.3:13986028-13986047 MS.gene64881:intron 30.0%
!! ATATACTTGAGTTTCTGGTT+GGG - chr5.3:13986213-13986232 MS.gene64881:intron 30.0%
!! CATTTTGATGAACTCTACAT+GGG - chr5.3:13984828-13984847 MS.gene64881:CDS 30.0%
!! TCATTTTGATGAACTCTACA+TGG - chr5.3:13984827-13984846 MS.gene64881:CDS 30.0%
AAAGCAATAACTGTTCCATC+AGG + chr5.3:13986062-13986081 None:intergenic 35.0%
AAGTATATCAGCATAGTCCT+TGG + chr5.3:13986201-13986220 None:intergenic 35.0%
AATCCAACTGAATGCAAGTT+TGG + chr5.3:13986366-13986385 None:intergenic 35.0%
AATTTATGGTGAAGTCACCT+AGG + chr5.3:13984330-13984349 None:intergenic 35.0%
ACAGCTGAAGAAAATAGACA+CGG - chr5.3:13985420-13985439 MS.gene64881:intron 35.0%
AGAACAACAAAGTAGTCATC+TGG + chr5.3:13985276-13985295 None:intergenic 35.0%
AGCATCCTAGAGAAAAACAT+AGG + chr5.3:13984265-13984284 None:intergenic 35.0%
ATGAAGTGTAGATAAAGCCA+AGG + chr5.3:13985878-13985897 None:intergenic 35.0%
ATTTATGGTGAAGTCACCTA+GGG + chr5.3:13984329-13984348 None:intergenic 35.0%
CAGCAGAATAGTTATCAAAC+AGG + chr5.3:13986151-13986170 None:intergenic 35.0%
CATTCAGTTGGATTCATGAT+AGG - chr5.3:13986372-13986391 MS.gene64881:CDS 35.0%
CTACACTTCATTTCAAGAGA+GGG - chr5.3:13985887-13985906 MS.gene64881:intron 35.0%
CTATGCTTAATACTTTGGAC+GGG - chr5.3:13985340-13985359 MS.gene64881:intron 35.0%
GACAGAGATTCATGTTGAAT+AGG + chr5.3:13984378-13984397 None:intergenic 35.0%
GCATCCTAGAGAAAAACATA+GGG + chr5.3:13984264-13984283 None:intergenic 35.0%
TATACGCTTTCTCTCTTTCT+TGG - chr5.3:13984473-13984492 MS.gene64881:intron 35.0%
TATCAAACAGGTTGTTGTCT+CGG + chr5.3:13986139-13986158 None:intergenic 35.0%
TATGCTTAATACTTTGGACG+GGG - chr5.3:13985341-13985360 MS.gene64881:intron 35.0%
TCTACACTTCATTTCAAGAG+AGG - chr5.3:13985886-13985905 MS.gene64881:intron 35.0%
TGCTGATATACTTGAGTTTC+TGG - chr5.3:13986208-13986227 MS.gene64881:intron 35.0%
TGTAGATAAAGCCAAGGTAA+GGG + chr5.3:13985872-13985891 None:intergenic 35.0%
TGTGTTTCCATGCGATATAA+AGG + chr5.3:13985916-13985935 None:intergenic 35.0%
TTTAATGAGCTGTCCATTCT+TGG + chr5.3:13984565-13984584 None:intergenic 35.0%
TTTGGATCGATGGAATTTGA+TGG - chr5.3:13985822-13985841 MS.gene64881:intron 35.0%
! AATTTGATGGATAGGATCCT+CGG - chr5.3:13985835-13985854 MS.gene64881:intron 35.0%
! ATCGATGGAATTTGATGGAT+AGG - chr5.3:13985827-13985846 MS.gene64881:intron 35.0%
! TATATTGACTGCGATAACGT+TGG + chr5.3:13985602-13985621 None:intergenic 35.0%
! TCTCTCTAATTTTGGATCGA+TGG - chr5.3:13985812-13985831 MS.gene64881:intron 35.0%
!! AGATGACTACTTTGTTGTTC+TGG - chr5.3:13985275-13985294 MS.gene64881:intron 35.0%
!! GATATACTTGAGTTTCTGGT+TGG - chr5.3:13986212-13986231 MS.gene64881:intron 35.0%
AACCTATGCATTTATGGTGC+TGG - chr5.3:13984778-13984797 MS.gene64881:CDS 40.0%
AATATCCTCACCTGCAAAGA+AGG + chr5.3:13984092-13984111 None:intergenic 40.0%
ACTTGAACATGCACTTCTCT+GGG + chr5.3:13985066-13985085 None:intergenic 40.0%
CATCCAAACTTGCATTCAGT+TGG - chr5.3:13986360-13986379 MS.gene64881:CDS 40.0%
CTATTGGAGATTGATCCTGA+TGG - chr5.3:13986044-13986063 MS.gene64881:intron 40.0%
GACTGCTTACACAAAGATAG+TGG - chr5.3:13986016-13986035 MS.gene64881:intron 40.0%
GGATATTCAGGATGCTTGTT+TGG - chr5.3:13984105-13984124 MS.gene64881:CDS 40.0%
GTGTAGATAAAGCCAAGGTA+AGG + chr5.3:13985873-13985892 None:intergenic 40.0%
TACCAGCACCATAAATGCAT+AGG + chr5.3:13984783-13984802 None:intergenic 40.0%
TACTTGAACATGCACTTCTC+TGG + chr5.3:13985067-13985086 None:intergenic 40.0%
TCTTTGTGTAAGCAGTCTCA+TGG + chr5.3:13986013-13986032 None:intergenic 40.0%
TTGTCTCATATCAACACGTC+CGG + chr5.3:13985475-13985494 None:intergenic 40.0%
TTTCAAATCGTTGGACGGTT+GGG - chr5.3:13985119-13985138 MS.gene64881:CDS 40.0%
! ATTCAGTACTTGATTGGCTC+TGG - chr5.3:13985507-13985526 MS.gene64881:intron 40.0%
! GATCATCTACATGGGAGTAT+TGG - chr5.3:13984729-13984748 MS.gene64881:intron 40.0%
! TGTTGTTCTGGTTGGAGATA+TGG - chr5.3:13985287-13985306 MS.gene64881:intron 40.0%
! TTTTCAAATCGTTGGACGGT+TGG - chr5.3:13985118-13985137 MS.gene64881:CDS 40.0%
! TTTTTCCTTCTTTGCAGGTG+AGG - chr5.3:13984084-13984103 MS.gene64881:CDS 40.0%
!! GACTACTTTGTTGTTCTGGT+TGG - chr5.3:13985279-13985298 MS.gene64881:intron 40.0%
!! TTACTGACTTGGAACCAGAA+CGG + chr5.3:13983928-13983947 None:intergenic 40.0%
!! TTGCTTTTGCTGACATGATG+AGG - chr5.3:13986075-13986094 MS.gene64881:intron 40.0%
!!! ACTGTCGATTTTGATCAGAC+TGG - chr5.3:13984635-13984654 MS.gene64881:intron 40.0%
AACACTTCTCCACGGGTTTA+AGG + chr5.3:13985167-13985186 None:intergenic 45.0%
AAGTGAAGGAACTGAGAGAG+AGG - chr5.3:13985238-13985257 MS.gene64881:CDS 45.0%
AATCCATCTGTGGAAGGATC+AGG + chr5.3:13985210-13985229 None:intergenic 45.0%
ACAGAGAATAGCCCTTACCT+TGG - chr5.3:13985858-13985877 MS.gene64881:intron 45.0%
ACCTGAAAGTCCCGTTATGT+CGG + chr5.3:13986252-13986271 None:intergenic 45.0%
AGAATCGGTAAACATGGACC+CGG + chr5.3:13984701-13984720 None:intergenic 45.0%
AGTGAAGGAACTGAGAGAGA+GGG - chr5.3:13985239-13985258 MS.gene64881:CDS 45.0%
CAGATCTCCCAAATTCCTCA+TGG - chr5.3:13983892-13983911 MS.gene64881:CDS 45.0%
CAGTGACACATTGATGCATC+TGG + chr5.3:13985677-13985696 None:intergenic 45.0%
CTTTGCAGGTGAGGATATTC+AGG - chr5.3:13984093-13984112 MS.gene64881:CDS 45.0%
GTGGAAGCCATGAGGAATTT+GGG + chr5.3:13983902-13983921 None:intergenic 45.0%
TCTTCGAATCCATCTGTGGA+AGG + chr5.3:13985216-13985235 None:intergenic 45.0%
TGGATTCGAAGAGCAAGTGA+AGG - chr5.3:13985224-13985243 MS.gene64881:CDS 45.0%
TTGCTCTTCGAATCCATCTG+TGG + chr5.3:13985220-13985239 None:intergenic 45.0%
TTTGCTCACTGCAGCAAATC+CGG - chr5.3:13984679-13984698 MS.gene64881:intron 45.0%
TTTGCTGCAGTGAGCAAATC+CGG + chr5.3:13984677-13984696 None:intergenic 45.0%
! AAGGCACAGGAGTATGTTTG+TGG - chr5.3:13986281-13986300 MS.gene64881:intron 45.0%
! AAGGGAAGGGATTACTGACT+TGG + chr5.3:13983939-13983958 None:intergenic 45.0%
! AGGCACAGGAGTATGTTTGT+GGG - chr5.3:13986282-13986301 MS.gene64881:intron 45.0%
! ATAACGGGACTTTCAGGTGA+GGG - chr5.3:13986254-13986273 MS.gene64881:intron 45.0%
! GAATTTGGGAGATCTGAGAC+TGG + chr5.3:13983888-13983907 None:intergenic 45.0%
! GGGTTTAAGGTGGGTCAATA+AGG + chr5.3:13985154-13985173 None:intergenic 45.0%
! TTAAACCCGTGGAGAAGTGT+TGG - chr5.3:13985166-13985185 MS.gene64881:CDS 45.0%
! TTGAAGTTGGCTCAGATCTG+TGG - chr5.3:13985963-13985982 MS.gene64881:intron 45.0%
!! GTACTTGATTGGCTCTGGAA+TGG - chr5.3:13985512-13985531 MS.gene64881:intron 45.0%
!! TACTTGAGTTTCTGGTTGGG+AGG - chr5.3:13986216-13986235 MS.gene64881:intron 45.0%
ACCAAGAATCAGAAGGCTGG+AGG - chr5.3:13986310-13986329 MS.gene64881:intron 50.0%
ACTTCTCCACGGGTTTAAGG+TGG + chr5.3:13985164-13985183 None:intergenic 50.0%
AGGGCGACCTTTATATCGCA+TGG - chr5.3:13985906-13985925 MS.gene64881:intron 50.0%
AGTGTAGACTCCAATGCGCT+GGG + chr5.3:13986177-13986196 None:intergenic 50.0%
ATTGACCCACCTTAAACCCG+TGG - chr5.3:13985155-13985174 MS.gene64881:CDS 50.0%
CATACAGTCGCGTCCAAGAA+TGG - chr5.3:13984549-13984568 MS.gene64881:intron 50.0%
CATTGGAGTCTACACTGCCA+AGG - chr5.3:13986181-13986200 MS.gene64881:intron 50.0%
CCAGCACACCTGATGTATGA+TGG - chr5.3:13986113-13986132 MS.gene64881:intron 50.0%
CCATCATACATCAGGTGTGC+TGG + chr5.3:13986116-13986135 None:intergenic 50.0%
GAGAGCTTCAGCAAGAGCAA+AGG - chr5.3:13986334-13986353 MS.gene64881:intron 50.0%
GGATCAGGCAGAAAATCCTG+TGG + chr5.3:13985195-13985214 None:intergenic 50.0%
GGTGGAAGCCATGAGGAATT+TGG + chr5.3:13983903-13983922 None:intergenic 50.0%
GGTTGCCACCAAGAATCAGA+AGG - chr5.3:13986303-13986322 MS.gene64881:intron 50.0%
TAAGGGCTATTCTCTGTCCG+AGG + chr5.3:13985855-13985874 None:intergenic 50.0%
TATCGCATGGAAACACAGCC+AGG - chr5.3:13985919-13985938 MS.gene64881:intron 50.0%
TCCAAATAGCCCAGGGAGTA+GGG + chr5.3:13985389-13985408 None:intergenic 50.0%
TCCAGCCTTCTGATTCTTGG+TGG + chr5.3:13986311-13986330 None:intergenic 50.0%
TCCCTGGGCTATTTGGACAA+GGG - chr5.3:13985392-13985411 MS.gene64881:intron 50.0%
TCCTCCAGCCTTCTGATTCT+TGG + chr5.3:13986314-13986333 None:intergenic 50.0%
TGAACATGCACTTCTCTGGG+AGG + chr5.3:13985063-13985082 None:intergenic 50.0%
TGGTTGCCAACACTTCTCCA+CGG + chr5.3:13985175-13985194 None:intergenic 50.0%
TGTCTCGGCCATCATACATC+AGG + chr5.3:13986124-13986143 None:intergenic 50.0%
TTGCTCACTGCAGCAAATCC+GGG - chr5.3:13984680-13984699 MS.gene64881:intron 50.0%
! ACTTTCAGGTGAGGGACGAA+AGG - chr5.3:13986262-13986281 MS.gene64881:intron 50.0%
! CATAACGGGACTTTCAGGTG+AGG - chr5.3:13986253-13986272 MS.gene64881:intron 50.0%
! CTTCTCCACGGGTTTAAGGT+GGG + chr5.3:13985163-13985182 None:intergenic 50.0%
! GGAACGCGGTGATTTGAAGT+TGG - chr5.3:13985950-13985969 MS.gene64881:intron 50.0%
! TGACTTGGAACCAGAACGGA+GGG + chr5.3:13983924-13983943 None:intergenic 50.0%
!! AAACACAGCCAGGCTTGCTA+AGG - chr5.3:13985929-13985948 MS.gene64881:intron 50.0%
!! CTTTTGGGGAGGCATAGAGT+GGG + chr5.3:13985091-13985110 None:intergenic 50.0%
!! TCTTTTGGGGAGGCATAGAG+TGG + chr5.3:13985092-13985111 None:intergenic 50.0%
!! TTGAGTTTCTGGTTGGGAGG+TGG - chr5.3:13986219-13986238 MS.gene64881:intron 50.0%
CAGTGTAGACTCCAATGCGC+TGG + chr5.3:13986178-13986197 None:intergenic 55.0%
CTCCCTGGGCTATTTGGACA+AGG - chr5.3:13985391-13985410 MS.gene64881:intron 55.0%
CTGCCTGATCCTTCCACAGA+TGG - chr5.3:13985204-13985223 MS.gene64881:CDS 55.0%
GACGGGGTTCGTGATGAAAC+AGG - chr5.3:13985357-13985376 MS.gene64881:intron 55.0%
GCCACCAAGAATCAGAAGGC+TGG - chr5.3:13986307-13986326 MS.gene64881:intron 55.0%
GCCCTTGTCCAAATAGCCCA+GGG + chr5.3:13985396-13985415 None:intergenic 55.0%
GGGCTATTTGGACAAGGGCA+TGG - chr5.3:13985397-13985416 MS.gene64881:intron 55.0%
GGTTGCCAACACTTCTCCAC+GGG + chr5.3:13985174-13985193 None:intergenic 55.0%
GTCCAAATAGCCCAGGGAGT+AGG + chr5.3:13985390-13985409 None:intergenic 55.0%
GTGGAAGGTGGCCGACATAA+CGG - chr5.3:13986238-13986257 MS.gene64881:intron 55.0%
TGCCCTTGTCCAAATAGCCC+AGG + chr5.3:13985397-13985416 None:intergenic 55.0%
TGGAAGGTGGCCGACATAAC+GGG - chr5.3:13986239-13986258 MS.gene64881:intron 55.0%
! GCCGACATAACGGGACTTTC+AGG - chr5.3:13986248-13986267 MS.gene64881:intron 55.0%
!! CTGACTTGGAACCAGAACGG+AGG + chr5.3:13983925-13983944 None:intergenic 55.0%
!! GGAGAAGTGTTGGCAACCAC+AGG - chr5.3:13985176-13985195 MS.gene64881:CDS 55.0%
!! GTTTCTGGTTGGGAGGTGGA+AGG - chr5.3:13986223-13986242 MS.gene64881:intron 55.0%
!! TGGCATCGACTTGTGACTGC+CGG - chr5.3:13984655-13984674 MS.gene64881:intron 55.0%
AACGGAGGGTGGAAGCCATG+AGG + chr5.3:13983910-13983929 None:intergenic 60.0%
AATAGCCCAGGGAGTAGGGC+TGG + chr5.3:13985385-13985404 None:intergenic 60.0%
ACCGCGTTCCTTAGCAAGCC+TGG + chr5.3:13985940-13985959 None:intergenic 60.0%
ATCGTTGGACGGTTGGGCTG+AGG - chr5.3:13985125-13985144 MS.gene64881:CDS 60.0%
ATGGCTTCCACCCTCCGTTC+TGG - chr5.3:13983911-13983930 MS.gene64881:CDS 60.0%
CTTGGAACCAGAACGGAGGG+TGG + chr5.3:13983921-13983940 None:intergenic 60.0%
GCCCTACTCCCTGGGCTATT+TGG - chr5.3:13985385-13985404 MS.gene64881:intron 60.0%
TCTGCTGTTGCCCAGCGCAT+TGG - chr5.3:13986164-13986183 MS.gene64881:intron 60.0%
TCTGGTTGGGAGGTGGAAGG+TGG - chr5.3:13986226-13986245 MS.gene64881:intron 60.0%
! AGGTGAGGGACGAAAGGCAC+AGG - chr5.3:13986268-13986287 MS.gene64881:intron 60.0%
!! GCCAGGCTTGCTAAGGAACG+CGG - chr5.3:13985936-13985955 MS.gene64881:intron 60.0%
AGGTGCCAGCCCTACTCCCT+GGG - chr5.3:13985377-13985396 MS.gene64881:intron 65.0%
CAGGTGCCAGCCCTACTCCC+TGG - chr5.3:13985376-13985395 MS.gene64881:intron 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 13983881 13986409 13983881 ID=MS.gene64881
chr5.3 mRNA 13983881 13986409 13983881 ID=MS.gene64881.t1;Parent=MS.gene64881
chr5.3 exon 13986351 13986409 13986351 ID=MS.gene64881.t1.exon1;Parent=MS.gene64881.t1
chr5.3 CDS 13986351 13986409 13986351 ID=cds.MS.gene64881.t1;Parent=MS.gene64881.t1
chr5.3 exon 13984757 13985261 13984757 ID=MS.gene64881.t1.exon2;Parent=MS.gene64881.t1
chr5.3 CDS 13984757 13985261 13984757 ID=cds.MS.gene64881.t1;Parent=MS.gene64881.t1
chr5.3 exon 13983881 13984441 13983881 ID=MS.gene64881.t1.exon3;Parent=MS.gene64881.t1
chr5.3 CDS 13983881 13984441 13983881 ID=cds.MS.gene64881.t1;Parent=MS.gene64881.t1
Gene Sequence

>MS.gene64881

ATGGCCAGTCTCAGATCTCCCAAATTCCTCATGGCTTCCACCCTCCGTTCTGGTTCCAAGTCAGTAATCCCTTCCCTTACTTTTTCATTTCATCTTCAATTTTCATTCTCAATTTTTTACTTTACTTTTTTATGTTATGTTGATTATTGATTATTTAATTTGTGATATGATATTGAAATGGTTCGATTGCATTCAAGTTTTTTTTTTTCCTTCTTTGCAGGTGAGGATATTCAGGATGCTTGTTTGGTTCAATAATTTAATTATATTCACAACGTTCTTTCTCATTATTATTTTTCATATTATCATTTGTTATGGTTACTATTCCACTTTTTTTTTTTTTTTTTTGCATGTTTCTGTCAGTAACGTATTTAATGATTTTACCCTATGTTTTTCTCTAGGATGCTTGTTTTTTTGATTGTATTCTATGGTAGTATAAACGTATATTCCCTAGGTGACTTCACCATAAATTCAATTTGGGAATTTTTTATTTCATTCCTATTCAACATGAATCTCTGTCTGTGTGTATAATCAATTATAAATTTTGGAACTTGTTGGGTCAATACTCTACATTACTTTCTGCTTGATTTGATTTTATACGCTTTCTCTCTTTCTTGGTCTTTAATTCATTCATGCATATGTGAATTTGATAACTGTTTACGGAAATTGGTCATACAGTCGCGTCCAAGAATGGACAGCTCATTAAAATTAGATTTTTTTTTTTATGTAATTCTAAAAATACTGAACTTAATTCTGGACTGTCGATTTTGATCAGACTGGCATCGACTTGTGACTGCCGGATTTGCTCACTGCAGCAAATCCGGGTCCATGTTTACCGATTCTTTTTTTATGATCATCTACATGGGAGTATTGGTAACACCTCTAGTGATTTGATTGATTAACCTATGCATTTATGGTGCTGGTATGCACTGCATATTCTGCCAAATTGTCATTTTGATGAACTCTACATGGGAGTTTTGTGATGTTGTTTCCATGAATGATAGTAATAATTTAATACATAAGTAAATTATTTTGCCTGTTAAAAAAATAATGATATTAATACAGTCTGGTATAAATCAATTCGCAAACGTAAGGTCATTTAAATGGTGCTGTACTGTTGCTCTAAAAAGTCATTTTATATTACTTTGCAGAGAGGTTGAAAATATTAAGAAGGCTTTCACACCTCCCAGAGAAGTGCATGTTCAAGTAACCCACTCTATGCCTCCCCAAAAGATTGAAATTTTCAAATCGTTGGACGGTTGGGCTGAGGAAACCTTATTGACCCACCTTAAACCCGTGGAGAAGTGTTGGCAACCACAGGATTTTCTGCCTGATCCTTCCACAGATGGATTCGAAGAGCAAGTGAAGGAACTGAGAGAGAGGGCAAAAGAGCTTCCAGATGACTACTTTGTTGTTCTGGTTGGAGATATGGTCACAGAAGAAGCTCTTCCTACTTACCAAACTATGCTTAATACTTTGGACGGGGTTCGTGATGAAACAGGTGCCAGCCCTACTCCCTGGGCTATTTGGACAAGGGCATGGACAGCTGAAGAAAATAGACACGGTGATCTTCTTAACAAGTATCTTTACTTGTCCGGACGTGTTGATATGAGACAAATTGAAAAGACAATTCAGTACTTGATTGGCTCTGGAATGGTAAGATCCTAGTTAGTTTCATAATAAATTCCATAATCATGCAAATGTTAAAGGAACTATTACATCCAACGTTATCGCAGTCAATATAATACAGAGAATGTGCTTAAAATGGACATTTTATCAACTAATGTCTAATGCATCCAGATGCATCAATGTGTCACTGTCAGTATAATTCATATTTATGTTTTGAATTTCTAGAACAAGGTCAAACTTCCATGAAATTCATTCTTGACTCAAAATAGTATGCTTGTTGAATCTTGTCATATTTATTGTTTATATCTCTCTAATTTTGGATCGATGGAATTTGATGGATAGGATCCTCGGACAGAGAATAGCCCTTACCTTGGCTTTATCTACACTTCATTTCAAGAGAGGGCGACCTTTATATCGCATGGAAACACAGCCAGGCTTGCTAAGGAACGCGGTGATTTGAAGTTGGCTCAGATCTGTGGTCTGATTGCGTCAGATGAGAAACGCCATGAGACTGCTTACACAAAGATAGTGGAAAAGCTATTGGAGATTGATCCTGATGGAACAGTTATTGCTTTTGCTGACATGATGAGGAAGAAAATTGCTATGCCAGCACACCTGATGTATGATGGCCGAGACAACAACCTGTTTGATAACTATTCTGCTGTTGCCCAGCGCATTGGAGTCTACACTGCCAAGGACTATGCTGATATACTTGAGTTTCTGGTTGGGAGGTGGAAGGTGGCCGACATAACGGGACTTTCAGGTGAGGGACGAAAGGCACAGGAGTATGTTTGTGGGTTGCCACCAAGAATCAGAAGGCTGGAGGAGAGAGCTTCAGCAAGAGCAAAGGAATCATCCAAACTTGCATTCAGTTGGATTCATGATAGGGAAGTACTACTCTAA

Protein sequence

>MS.gene64881.t1

MASLRSPKFLMASTLRSGSKEVENIKKAFTPPREVHVQVTHSMPPQKIEIFKSLDGWAEETLLTHLKPVEKCWQPQDFLPDPSTDGFEEQVKELRERAKELPDDYFVVLVGDMVTEEALPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKERGDLKLAQICGLIASDEKRHETAYTKIVEKLLEIDPDGTVIAFADMMRKKIAMPAHLMYDGRDNNLFDNYSAVAQRIGVYTAKDYADILEFLVGRWKVADITGLSGEGRKAQEYVCGLPPRIRRLEERASARAKESSKLAFSWIHDREVLL