Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32324.t1 | XP_013466413.1 | 98.5 | 330 | 5 | 0 | 7 | 336 | 61 | 390 | 5.20E-191 | 676.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32324.t1 | Q84VY3 | 80.6 | 335 | 64 | 1 | 1 | 334 | 55 | 389 | 5.7e-162 | 571.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32324.t1 | A0A072VEM1 | 98.5 | 330 | 5 | 0 | 7 | 336 | 61 | 390 | 3.8e-191 | 676.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053108 | MS.gene32324 | 0.828631 | 8.08E-55 | -1.69E-46 |
| MS.gene054155 | MS.gene32324 | 0.814188 | 1.75E-51 | -1.69E-46 |
| MS.gene056618 | MS.gene32324 | 0.837031 | 6.61E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32324 | MS.gene008720 | PPI |
| MS.gene64881 | MS.gene32324 | PPI |
| MS.gene32324 | MS.gene47524 | PPI |
| MS.gene39580 | MS.gene32324 | PPI |
| MS.gene65325 | MS.gene32324 | PPI |
| MS.gene26574 | MS.gene32324 | PPI |
| MS.gene72651 | MS.gene32324 | PPI |
| MS.gene86552 | MS.gene32324 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32324.t1 | MTR_1g029150 | 98.512 | 336 | 5 | 0 | 1 | 336 | 55 | 390 | 0.0 | 693 |
| MS.gene32324.t1 | MTR_3g090100 | 75.000 | 336 | 81 | 1 | 1 | 336 | 34 | 366 | 0.0 | 539 |
| MS.gene32324.t1 | MTR_3g090010 | 74.850 | 334 | 81 | 1 | 1 | 334 | 38 | 368 | 0.0 | 530 |
| MS.gene32324.t1 | MTR_3g090020 | 73.512 | 336 | 86 | 1 | 1 | 336 | 34 | 366 | 0.0 | 525 |
| MS.gene32324.t1 | MTR_3g089025 | 72.619 | 336 | 89 | 1 | 1 | 336 | 37 | 369 | 0.0 | 523 |
| MS.gene32324.t1 | MTR_5g024130 | 71.429 | 336 | 92 | 2 | 1 | 336 | 62 | 393 | 0.0 | 518 |
| MS.gene32324.t1 | MTR_4g087440 | 71.429 | 336 | 92 | 2 | 1 | 336 | 62 | 393 | 0.0 | 518 |
| MS.gene32324.t1 | MTR_3g090110 | 47.863 | 117 | 38 | 1 | 178 | 294 | 2 | 95 | 2.72e-28 | 106 |
| MS.gene32324.t1 | MTR_3g089980 | 59.184 | 98 | 27 | 2 | 197 | 294 | 6 | 90 | 2.21e-27 | 103 |
| MS.gene32324.t1 | MTR_3g089973 | 42.657 | 143 | 38 | 2 | 178 | 320 | 2 | 100 | 7.09e-21 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32324.t1 | AT1G43800 | 80.597 | 335 | 64 | 1 | 1 | 334 | 55 | 389 | 0.0 | 579 |
| MS.gene32324.t1 | AT3G02630 | 71.557 | 334 | 92 | 2 | 1 | 334 | 64 | 394 | 0.0 | 515 |
| MS.gene32324.t1 | AT2G43710 | 70.238 | 336 | 96 | 2 | 1 | 336 | 70 | 401 | 0.0 | 506 |
| MS.gene32324.t1 | AT2G43710 | 70.238 | 336 | 96 | 2 | 1 | 336 | 70 | 401 | 0.0 | 506 |
| MS.gene32324.t1 | AT5G16240 | 69.162 | 334 | 100 | 2 | 1 | 334 | 62 | 392 | 4.58e-178 | 499 |
| MS.gene32324.t1 | AT5G16230 | 67.359 | 337 | 108 | 2 | 1 | 336 | 66 | 401 | 1.40e-172 | 485 |
| MS.gene32324.t1 | AT3G02610 | 68.843 | 337 | 99 | 4 | 4 | 336 | 77 | 411 | 1.52e-171 | 483 |
| MS.gene32324.t1 | AT3G02610 | 68.843 | 337 | 99 | 4 | 4 | 336 | 79 | 413 | 1.58e-171 | 483 |
| MS.gene32324.t1 | AT3G02620 | 67.656 | 337 | 103 | 4 | 4 | 336 | 69 | 403 | 1.18e-168 | 475 |
| MS.gene32324.t1 | AT3G02620 | 67.656 | 337 | 103 | 4 | 4 | 336 | 72 | 406 | 1.36e-168 | 475 |
| MS.gene32324.t1 | AT5G16230 | 66.871 | 326 | 106 | 2 | 12 | 336 | 1 | 325 | 2.61e-166 | 466 |
| MS.gene32324.t1 | AT3G02620 | 66.869 | 329 | 103 | 4 | 12 | 336 | 1 | 327 | 4.29e-163 | 458 |
Find 93 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGACTTATTTGTACCTTTC+TGG | 0.197048 | 1.4:+14218053 | MS.gene32324:CDS |
| GTGTATACAAATCCCAAGTA+TGG | 0.240289 | 1.4:-14218898 | None:intergenic |
| GATTAACGGGTGAGGGAAAA+AGG | 0.240677 | 1.4:+14219289 | MS.gene32324:CDS |
| TGTTGTGTTGGTTGGTGATA+TGG | 0.248245 | 1.4:+14217887 | MS.gene32324:CDS |
| CCTTTCTGGAAGGGTTGATA+TGG | 0.318255 | 1.4:+14218067 | MS.gene32324:CDS |
| GTCCAAGTCCGTGGGCCGTT+TGG | 0.346208 | 1.4:+14217985 | MS.gene32324:CDS |
| CAAGATATCCGCGTAATCAT+TGG | 0.384695 | 1.4:-14219226 | None:intergenic |
| GGCTGCCAGCATTGTTCCAC+TGG | 0.386228 | 1.4:-14217765 | None:intergenic |
| CAATGATTACGCGGATATCT+TGG | 0.392773 | 1.4:+14219227 | MS.gene32324:CDS |
| GGGCCGTTTGGACACGGGCT+TGG | 0.396447 | 1.4:+14217997 | MS.gene32324:CDS |
| GTCCAAACGGCCCACGGACT+TGG | 0.399032 | 1.4:-14217987 | None:intergenic |
| AACGGCCCACGGACTTGGAC+TGG | 0.400543 | 1.4:-14217982 | None:intergenic |
| CACATGGGGTCAAGTTTAGT+TGG | 0.400607 | 1.4:+14219394 | MS.gene32324:CDS |
| ATACAAATGTTGCTCGCTCT+TGG | 0.405320 | 1.4:-14218927 | None:intergenic |
| TTTAATCGAACGGTGGAGAT+TGG | 0.410251 | 1.4:+14219254 | MS.gene32324:CDS |
| GACAGAAAACAACCCATACT+TGG | 0.410965 | 1.4:+14218885 | MS.gene32324:CDS |
| ATTTGATGAATTTACTGATC+AGG | 0.419139 | 1.4:+14217818 | MS.gene32324:CDS |
| TCAAATGGCAATGAAGGATC+AGG | 0.420107 | 1.4:-14217801 | None:intergenic |
| GGTTAGCACCTAGGATTAGA+AGG | 0.425605 | 1.4:+14219331 | MS.gene32324:CDS |
| GCGAAGTGCTCGAATAGCTT+AGG | 0.429820 | 1.4:-14219171 | None:intergenic |
| GGAGAAGCTTGAAGGATTAA+CGG | 0.433519 | 1.4:+14219275 | MS.gene32324:CDS |
| GTCCGTGGGCCGTTTGGACA+CGG | 0.438549 | 1.4:+14217991 | MS.gene32324:CDS |
| TTTGCATTGGACAGGACCCC+GGG | 0.454311 | 1.4:+14218863 | MS.gene32324:intron |
| TGATCAGTAAATTCATCAAA+TGG | 0.459663 | 1.4:-14217816 | None:intergenic |
| ATAGACATGGGGATTTGCTT+AGG | 0.460553 | 1.4:+14218033 | MS.gene32324:CDS |
| AAAACTGTTCAGTATCTCAT+TGG | 0.460584 | 1.4:+14218101 | MS.gene32324:CDS |
| CCACATATGCGCGCAAGCAC+TGG | 0.472837 | 1.4:-14218991 | None:intergenic |
| AATTCATCAAATGGCAATGA+AGG | 0.478762 | 1.4:-14217807 | None:intergenic |
| CGAAGTGCTCGAATAGCTTA+GGG | 0.481594 | 1.4:-14219170 | None:intergenic |
| GAGAAGCTTGAAGGATTAAC+GGG | 0.482203 | 1.4:+14219276 | MS.gene32324:CDS |
| TGGAGATTGGAGAAGCTTGA+AGG | 0.484791 | 1.4:+14219267 | MS.gene32324:CDS |
| CCAGTGCTTGCGCGCATATG+TGG | 0.484813 | 1.4:+14218991 | MS.gene32324:CDS |
| ATTCGAGCACTTCGCGGCTG+TGG | 0.485856 | 1.4:+14219179 | MS.gene32324:CDS |
| TCTTGCAACCTTCTAATCCT+AGG | 0.486803 | 1.4:-14219339 | None:intergenic |
| GCGGCTGTGGCACAGCGCAC+CGG | 0.489252 | 1.4:+14219192 | MS.gene32324:CDS |
| AACACAACAAAATACTCATC+AGG | 0.489365 | 1.4:-14217873 | None:intergenic |
| CCGGCACACCTTATGTATGA+TGG | 0.493314 | 1.4:+14219141 | MS.gene32324:CDS |
| GGTCTTGTCCATCATACATA+AGG | 0.494290 | 1.4:-14219149 | None:intergenic |
| AATGGCTAGCATTGCTCCCG+TGG | 0.498130 | 1.4:-14219088 | None:intergenic |
| TTGTGTGCGGGTTAGCACCT+AGG | 0.512221 | 1.4:+14219322 | MS.gene32324:CDS |
| TTATTTGTACCTTTCTGGAA+GGG | 0.516735 | 1.4:+14218058 | MS.gene32324:CDS |
| ATGGCTAGCATTGCTCCCGT+GGG | 0.517421 | 1.4:-14219087 | None:intergenic |
| TCCGTGGGCCGTTTGGACAC+GGG | 0.519940 | 1.4:+14217992 | MS.gene32324:CDS |
| AGTCCAAGCCCGTGTCCAAA+CGG | 0.523809 | 1.4:-14218000 | None:intergenic |
| TAAAGCCAGTGGAACAATGC+TGG | 0.530542 | 1.4:+14217760 | MS.gene32324:CDS |
| TTGGTTCCAGTCCAAGTCCG+TGG | 0.532200 | 1.4:+14217976 | MS.gene32324:CDS |
| TTTCTCCATCATATCACCAA+TGG | 0.532359 | 1.4:-14219106 | None:intergenic |
| ACGGGAGCAATGCTAGCCAT+TGG | 0.537374 | 1.4:+14219090 | MS.gene32324:CDS |
| GTTTGCATTGGACAGGACCC+CGG | 0.538725 | 1.4:+14218862 | MS.gene32324:intron |
| AGTATGATCAATGGTCTTGA+TGG | 0.539669 | 1.4:+14217939 | MS.gene32324:CDS |
| GCTAGCCATTGGTGATATGA+TGG | 0.539965 | 1.4:+14219101 | MS.gene32324:CDS |
| CTTATTTGTACCTTTCTGGA+AGG | 0.540700 | 1.4:+14218057 | MS.gene32324:CDS |
| GCCCGTGTCCAAACGGCCCA+CGG | 0.542917 | 1.4:-14217993 | None:intergenic |
| CCATCATACATAAGGTGTGC+CGG | 0.547215 | 1.4:-14219141 | None:intergenic |
| CCATATCAACCCTTCCAGAA+AGG | 0.550503 | 1.4:-14218067 | None:intergenic |
| GTTCAGTATCTCATTGGAGC+TGG | 0.553993 | 1.4:+14218107 | MS.gene32324:CDS |
| TTTCAAATCACTAGAAAACT+GGG | 0.554024 | 1.4:+14217713 | MS.gene32324:CDS |
| CGTCGAGAAGCTTCTAGAAG+TGG | 0.554197 | 1.4:+14219062 | MS.gene32324:CDS |
| TAAGCTATTCGAGCACTTCG+CGG | 0.554539 | 1.4:+14219173 | MS.gene32324:CDS |
| GTATCTCATTGGAGCTGGCA+TGG | 0.555720 | 1.4:+14218112 | MS.gene32324:CDS |
| TGTTCCACTGGCTTTAGTAG+TGG | 0.556461 | 1.4:-14217753 | None:intergenic |
| ACGGCTCGCTTAGCGAAAGA+TGG | 0.564465 | 1.4:+14218961 | MS.gene32324:CDS |
| GATGGTGTTAGTGATGAGGT+TGG | 0.572019 | 1.4:+14217957 | MS.gene32324:CDS |
| TGGTTCCAGTCCAAGTCCGT+GGG | 0.572710 | 1.4:+14217977 | MS.gene32324:CDS |
| GCTTGAAGGATTAACGGGTG+AGG | 0.586573 | 1.4:+14219281 | MS.gene32324:CDS |
| TGTATACAAATCCCAAGTAT+GGG | 0.587703 | 1.4:-14218897 | None:intergenic |
| ACGTATCAGAGTATGATCAA+TGG | 0.591704 | 1.4:+14217930 | MS.gene32324:CDS |
| ACAGCGCACCGGAGTTTACA+CGG | 0.592150 | 1.4:+14219203 | MS.gene32324:CDS |
| CTTCTAGAAGTGGACCCCAC+GGG | 0.595667 | 1.4:+14219072 | MS.gene32324:CDS |
| ATCATTGGCCGTGTAAACTC+CGG | 0.595715 | 1.4:-14219211 | None:intergenic |
| CTTGAAGGATTAACGGGTGA+GGG | 0.596019 | 1.4:+14219282 | MS.gene32324:CDS |
| ACAGAAAACAACCCATACTT+GGG | 0.596760 | 1.4:+14218886 | MS.gene32324:CDS |
| CAACTAAACTTGACCCCATG+TGG | 0.598754 | 1.4:-14219393 | None:intergenic |
| GCTTCTAGAAGTGGACCCCA+CGG | 0.598784 | 1.4:+14219071 | MS.gene32324:CDS |
| TCTTGATGGTGTTAGTGATG+AGG | 0.616481 | 1.4:+14217953 | MS.gene32324:CDS |
| CGAGCAACATTTGTATCACA+CGG | 0.621285 | 1.4:+14218934 | MS.gene32324:CDS |
| ATTTGTATCACACGGAAACA+CGG | 0.623224 | 1.4:+14218942 | MS.gene32324:CDS |
| TTGATCATACTCTGATACGT+CGG | 0.624523 | 1.4:-14217927 | None:intergenic |
| CAAATGGCAATGAAGGATCA+GGG | 0.626451 | 1.4:-14217800 | None:intergenic |
| CAACAAAATACTCATCAGGA+AGG | 0.632422 | 1.4:-14217869 | None:intergenic |
| CTCGTAAGATGAAACCACAT+GGG | 0.643536 | 1.4:+14219379 | MS.gene32324:CDS |
| CTGCTGAAGAAAATAGACAT+GGG | 0.645814 | 1.4:+14218021 | MS.gene32324:CDS |
| GCTCGCTTAGCGAAAGATGG+CGG | 0.654478 | 1.4:+14218964 | MS.gene32324:CDS |
| GCTCGTAAGATGAAACCACA+TGG | 0.658763 | 1.4:+14219378 | MS.gene32324:CDS |
| TGCTGAAGAAAATAGACATG+GGG | 0.668352 | 1.4:+14218022 | MS.gene32324:CDS |
| AGTCCTTCGTGATCGCACGA+AGG | 0.668406 | 1.4:+14217845 | MS.gene32324:CDS |
| TGGCTAGCATTGCTCCCGTG+GGG | 0.669064 | 1.4:-14219086 | None:intergenic |
| ACTGCTGAAGAAAATAGACA+TGG | 0.671679 | 1.4:+14218020 | MS.gene32324:CDS |
| TTTACCACTACTAAAGCCAG+TGG | 0.671826 | 1.4:+14217749 | MS.gene32324:CDS |
| GGTCCTTCGTGCGATCACGA+AGG | 0.701116 | 1.4:-14217848 | None:intergenic |
| GGATCAGGGAGAAAATTCTG+TGG | 0.710660 | 1.4:-14217786 | None:intergenic |
| TTACACGGCCAATGATTACG+CGG | 0.711680 | 1.4:+14219218 | MS.gene32324:CDS |
| TCGTAAGATGAAACCACATG+GGG | 0.759922 | 1.4:+14219380 | MS.gene32324:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAATAATTAGATAAAT+TGG | + | chr1.4:14218218-14218237 | MS.gene32324:intron | 10.0% |
| !! | TACTTAATAATATAACTAAA+TGG | + | chr1.4:14218800-14218819 | MS.gene32324:intron | 10.0% |
| !! | TCAAAAATAAATCTATAATA+GGG | + | chr1.4:14218529-14218548 | MS.gene32324:intron | 10.0% |
| !! | TTCAAAAATAAATCTATAAT+AGG | + | chr1.4:14218528-14218547 | MS.gene32324:intron | 10.0% |
| !! | CTTATTATTAATTTAAGTGA+TGG | + | chr1.4:14218255-14218274 | MS.gene32324:intron | 15.0% |
| !! | TTATATGAAACCAAAAATAA+TGG | + | chr1.4:14218720-14218739 | MS.gene32324:intron | 15.0% |
| !! | TAATAAACAAAATGTTGTCT+TGG | + | chr1.4:14218332-14218351 | MS.gene32324:intron | 20.0% |
| !!! | ACATTAAATTTTGTTTGCAT+TGG | + | chr1.4:14218850-14218869 | MS.gene32324:intron | 20.0% |
| !!! | GTAGACATTATTTTCAAATT+AGG | - | chr1.4:14218832-14218851 | None:intergenic | 20.0% |
| !!! | TAGTTGGATTTTTAATAATG+AGG | + | chr1.4:14219410-14219429 | MS.gene32324:CDS | 20.0% |
| ! | ATTTGATGAATTTACTGATC+AGG | + | chr1.4:14217818-14217837 | MS.gene32324:CDS | 25.0% |
| ! | TATATGATCAGAGATACTAA+TGG | - | chr1.4:14218507-14218526 | None:intergenic | 25.0% |
| ! | TGATCAGTAAATTCATCAAA+TGG | - | chr1.4:14217819-14217838 | None:intergenic | 25.0% |
| ! | TTTCAAATCACTAGAAAACT+GGG | + | chr1.4:14217713-14217732 | MS.gene32324:CDS | 25.0% |
| !! | CATGAAAACTCCATTATTTT+TGG | - | chr1.4:14218733-14218752 | None:intergenic | 25.0% |
| !! | TGTACATTTTATTGCAATCT+AGG | + | chr1.4:14218189-14218208 | MS.gene32324:intron | 25.0% |
| !! | TTTTCAAATCACTAGAAAAC+TGG | + | chr1.4:14217712-14217731 | MS.gene32324:CDS | 25.0% |
| !!! | AGAATACTCTGTTTTGTTTT+TGG | + | chr1.4:14218629-14218648 | MS.gene32324:intron | 25.0% |
| !!! | GAATACTCTGTTTTGTTTTT+GGG | + | chr1.4:14218630-14218649 | MS.gene32324:intron | 25.0% |
| !!! | TTGAAAATTTCTAGCTTTTC+TGG | - | chr1.4:14217699-14217718 | None:intergenic | 25.0% |
| AAAACTGTTCAGTATCTCAT+TGG | + | chr1.4:14218101-14218120 | MS.gene32324:CDS | 30.0% | |
| AACACAACAAAATACTCATC+AGG | - | chr1.4:14217876-14217895 | None:intergenic | 30.0% | |
| AATTCATCAAATGGCAATGA+AGG | - | chr1.4:14217810-14217829 | None:intergenic | 30.0% | |
| ATATGTGATCAAACACAAAC+AGG | - | chr1.4:14218589-14218608 | None:intergenic | 30.0% | |
| GGGATTCTATTTAGATAGAT+AGG | - | chr1.4:14218567-14218586 | None:intergenic | 30.0% | |
| GTATTCTGTGATCAAATGAA+AGG | - | chr1.4:14218616-14218635 | None:intergenic | 30.0% | |
| TATGTGATCAAACACAAACA+GGG | - | chr1.4:14218588-14218607 | None:intergenic | 30.0% | |
| TGTATACAAATCCCAAGTAT+GGG | - | chr1.4:14218900-14218919 | None:intergenic | 30.0% | |
| ! | AACAGTAACACATTCTGTTT+TGG | - | chr1.4:14218657-14218676 | None:intergenic | 30.0% |
| ! | AATGGAGTTTTCATGTGTTA+CGG | + | chr1.4:14218738-14218757 | MS.gene32324:intron | 30.0% |
| ! | TCTTGGAGTTTTTAATCGAA+CGG | + | chr1.4:14219244-14219263 | MS.gene32324:CDS | 30.0% |
| ! | TTATTTGTACCTTTCTGGAA+GGG | + | chr1.4:14218058-14218077 | MS.gene32324:CDS | 30.0% |
| !! | AAATTTTGTTTGCATTGGAC+AGG | + | chr1.4:14218855-14218874 | MS.gene32324:intron | 30.0% |
| !! | TGATGAGTATTTTGTTGTGT+TGG | + | chr1.4:14217875-14217894 | MS.gene32324:CDS | 30.0% |
| !!! | AAAATTTCTAGCTTTTCTGG+TGG | - | chr1.4:14217696-14217715 | None:intergenic | 30.0% |
| !!! | TGTGTTACGGTTTTTTCTTA+CGG | + | chr1.4:14218751-14218770 | MS.gene32324:intron | 30.0% |
| ACAGAAAACAACCCATACTT+GGG | + | chr1.4:14218886-14218905 | MS.gene32324:CDS | 35.0% | |
| ACGTATCAGAGTATGATCAA+TGG | + | chr1.4:14217930-14217949 | MS.gene32324:CDS | 35.0% | |
| ACTGCTGAAGAAAATAGACA+TGG | + | chr1.4:14218020-14218039 | MS.gene32324:CDS | 35.0% | |
| AGGACTTATTTGTACCTTTC+TGG | + | chr1.4:14218053-14218072 | MS.gene32324:CDS | 35.0% | |
| ATGGAAAGCAACATTGTAAG+AGG | - | chr1.4:14218488-14218507 | None:intergenic | 35.0% | |
| ATGTGATCAAACACAAACAG+GGG | - | chr1.4:14218587-14218606 | None:intergenic | 35.0% | |
| ATTTGTATCACACGGAAACA+CGG | + | chr1.4:14218942-14218961 | MS.gene32324:CDS | 35.0% | |
| CAACAAAATACTCATCAGGA+AGG | - | chr1.4:14217872-14217891 | None:intergenic | 35.0% | |
| CTGCTGAAGAAAATAGACAT+GGG | + | chr1.4:14218021-14218040 | MS.gene32324:CDS | 35.0% | |
| CTTATTTGTACCTTTCTGGA+AGG | + | chr1.4:14218057-14218076 | MS.gene32324:CDS | 35.0% | |
| GGAGAAAAAAATCACAATGC+CGG | + | chr1.4:14219122-14219141 | MS.gene32324:CDS | 35.0% | |
| GTGTATACAAATCCCAAGTA+TGG | - | chr1.4:14218901-14218920 | None:intergenic | 35.0% | |
| TGCTGAAGAAAATAGACATG+GGG | + | chr1.4:14218022-14218041 | MS.gene32324:CDS | 35.0% | |
| TTGATCATACTCTGATACGT+CGG | - | chr1.4:14217930-14217949 | None:intergenic | 35.0% | |
| TTTCTCCATCATATCACCAA+TGG | - | chr1.4:14219109-14219128 | None:intergenic | 35.0% | |
| ! | AGTATGATCAATGGTCTTGA+TGG | + | chr1.4:14217939-14217958 | MS.gene32324:CDS | 35.0% |
| ! | TGATGGATAGTCATAGTAGT+AGG | + | chr1.4:14218272-14218291 | MS.gene32324:intron | 35.0% |
| !! | GAGTATTTTGTTGTGTTGGT+TGG | + | chr1.4:14217879-14217898 | MS.gene32324:CDS | 35.0% |
| !! | TCATAGTAGTAGGAGTGTTT+AGG | + | chr1.4:14218282-14218301 | MS.gene32324:intron | 35.0% |
| ATACAAATGTTGCTCGCTCT+TGG | - | chr1.4:14218930-14218949 | None:intergenic | 40.0% | |
| CAAATGGCAATGAAGGATCA+GGG | - | chr1.4:14217803-14217822 | None:intergenic | 40.0% | |
| CAAGATATCCGCGTAATCAT+TGG | - | chr1.4:14219229-14219248 | None:intergenic | 40.0% | |
| CAATGATTACGCGGATATCT+TGG | + | chr1.4:14219227-14219246 | MS.gene32324:CDS | 40.0% | |
| CGAGCAACATTTGTATCACA+CGG | + | chr1.4:14218934-14218953 | MS.gene32324:CDS | 40.0% | |
| CTCGTAAGATGAAACCACAT+GGG | + | chr1.4:14219379-14219398 | MS.gene32324:CDS | 40.0% | |
| GACAGAAAACAACCCATACT+TGG | + | chr1.4:14218885-14218904 | MS.gene32324:CDS | 40.0% | |
| GAGAAGCTTGAAGGATTAAC+GGG | + | chr1.4:14219276-14219295 | MS.gene32324:CDS | 40.0% | |
| GGAGAAGCTTGAAGGATTAA+CGG | + | chr1.4:14219275-14219294 | MS.gene32324:CDS | 40.0% | |
| TCAAATGGCAATGAAGGATC+AGG | - | chr1.4:14217804-14217823 | None:intergenic | 40.0% | |
| TCGTAAGATGAAACCACATG+GGG | + | chr1.4:14219380-14219399 | MS.gene32324:CDS | 40.0% | |
| TCTTGCAACCTTCTAATCCT+AGG | - | chr1.4:14219342-14219361 | None:intergenic | 40.0% | |
| TTTAATCGAACGGTGGAGAT+TGG | + | chr1.4:14219254-14219273 | MS.gene32324:CDS | 40.0% | |
| TTTACCACTACTAAAGCCAG+TGG | + | chr1.4:14217749-14217768 | MS.gene32324:CDS | 40.0% | |
| ! | ATAGACATGGGGATTTGCTT+AGG | + | chr1.4:14218033-14218052 | MS.gene32324:CDS | 40.0% |
| ! | ATTAACGGGTGAGGGAAAAA+GGG | + | chr1.4:14219290-14219309 | MS.gene32324:CDS | 40.0% |
| ! | GGTCTTGTCCATCATACATA+AGG | - | chr1.4:14219152-14219171 | None:intergenic | 40.0% |
| ! | GTTCTCATGACGCTTTTCAT+CGG | - | chr1.4:14219028-14219047 | None:intergenic | 40.0% |
| ! | TGGAGTTTTTAATCGAACGG+TGG | + | chr1.4:14219247-14219266 | MS.gene32324:CDS | 40.0% |
| !! | TAGTAGTAGGAGTGTTTAGG+TGG | + | chr1.4:14218285-14218304 | MS.gene32324:intron | 40.0% |
| !! | TCTTGATGGTGTTAGTGATG+AGG | + | chr1.4:14217953-14217972 | MS.gene32324:CDS | 40.0% |
| !! | TGTTGTGTTGGTTGGTGATA+TGG | + | chr1.4:14217887-14217906 | MS.gene32324:CDS | 40.0% |
| ATCATTGGCCGTGTAAACTC+CGG | - | chr1.4:14219214-14219233 | None:intergenic | 45.0% | |
| CAACTAAACTTGACCCCATG+TGG | - | chr1.4:14219396-14219415 | None:intergenic | 45.0% | |
| CACATGGGGTCAAGTTTAGT+TGG | + | chr1.4:14219394-14219413 | MS.gene32324:CDS | 45.0% | |
| CCATATCAACCCTTCCAGAA+AGG | - | chr1.4:14218070-14218089 | None:intergenic | 45.0% | |
| CCATCATACATAAGGTGTGC+CGG | - | chr1.4:14219144-14219163 | None:intergenic | 45.0% | |
| GCTCGTAAGATGAAACCACA+TGG | + | chr1.4:14219378-14219397 | MS.gene32324:CDS | 45.0% | |
| GGATCAGGGAGAAAATTCTG+TGG | - | chr1.4:14217789-14217808 | None:intergenic | 45.0% | |
| GGTTAGCACCTAGGATTAGA+AGG | + | chr1.4:14219331-14219350 | MS.gene32324:CDS | 45.0% | |
| GTTCAGTATCTCATTGGAGC+TGG | + | chr1.4:14218107-14218126 | MS.gene32324:CDS | 45.0% | |
| TAAAGCCAGTGGAACAATGC+TGG | + | chr1.4:14217760-14217779 | MS.gene32324:CDS | 45.0% | |
| TAAGCTATTCGAGCACTTCG+CGG | + | chr1.4:14219173-14219192 | MS.gene32324:CDS | 45.0% | |
| TGGAGATTGGAGAAGCTTGA+AGG | + | chr1.4:14219267-14219286 | MS.gene32324:CDS | 45.0% | |
| TTACACGGCCAATGATTACG+CGG | + | chr1.4:14219218-14219237 | MS.gene32324:CDS | 45.0% | |
| ! | CGAAGTGCTCGAATAGCTTA+GGG | - | chr1.4:14219173-14219192 | None:intergenic | 45.0% |
| ! | CTTGAAGGATTAACGGGTGA+GGG | + | chr1.4:14219282-14219301 | MS.gene32324:CDS | 45.0% |
| ! | GATGGTGTTAGTGATGAGGT+TGG | + | chr1.4:14217957-14217976 | MS.gene32324:CDS | 45.0% |
| ! | GATTAACGGGTGAGGGAAAA+AGG | + | chr1.4:14219289-14219308 | MS.gene32324:CDS | 45.0% |
| ! | GCTAGCCATTGGTGATATGA+TGG | + | chr1.4:14219101-14219120 | MS.gene32324:CDS | 45.0% |
| !! | CCTTTCTGGAAGGGTTGATA+TGG | + | chr1.4:14218067-14218086 | MS.gene32324:CDS | 45.0% |
| !! | GTATGGGTTGTTTTCTGTCC+CGG | - | chr1.4:14218884-14218903 | None:intergenic | 45.0% |
| !! | TATGGGTTGTTTTCTGTCCC+GGG | - | chr1.4:14218883-14218902 | None:intergenic | 45.0% |
| !! | TGTTCCACTGGCTTTAGTAG+TGG | - | chr1.4:14217756-14217775 | None:intergenic | 45.0% |
| CCGGCACACCTTATGTATGA+TGG | + | chr1.4:14219141-14219160 | MS.gene32324:CDS | 50.0% | |
| GTATCTCATTGGAGCTGGCA+TGG | + | chr1.4:14218112-14218131 | MS.gene32324:CDS | 50.0% | |
| ! | CGTCGAGAAGCTTCTAGAAG+TGG | + | chr1.4:14219062-14219081 | MS.gene32324:CDS | 50.0% |
| ! | GCGAAGTGCTCGAATAGCTT+AGG | - | chr1.4:14219174-14219193 | None:intergenic | 50.0% |
| ! | GCTTGAAGGATTAACGGGTG+AGG | + | chr1.4:14219281-14219300 | MS.gene32324:CDS | 50.0% |
| !! | ATGGGTTGTTTTCTGTCCCG+GGG | - | chr1.4:14218882-14218901 | None:intergenic | 50.0% |
| AATGGCTAGCATTGCTCCCG+TGG | - | chr1.4:14219091-14219110 | None:intergenic | 55.0% | |
| ACAGCGCACCGGAGTTTACA+CGG | + | chr1.4:14219203-14219222 | MS.gene32324:CDS | 55.0% | |
| ACGGCTCGCTTAGCGAAAGA+TGG | + | chr1.4:14218961-14218980 | MS.gene32324:CDS | 55.0% | |
| ACGGGAGCAATGCTAGCCAT+TGG | + | chr1.4:14219090-14219109 | MS.gene32324:CDS | 55.0% | |
| AGTCCAAGCCCGTGTCCAAA+CGG | - | chr1.4:14218003-14218022 | None:intergenic | 55.0% | |
| AGTCCTTCGTGATCGCACGA+AGG | + | chr1.4:14217845-14217864 | MS.gene32324:CDS | 55.0% | |
| ATGGCTAGCATTGCTCCCGT+GGG | - | chr1.4:14219090-14219109 | None:intergenic | 55.0% | |
| GCTCGCTTAGCGAAAGATGG+CGG | + | chr1.4:14218964-14218983 | MS.gene32324:CDS | 55.0% | |
| GTTTGCATTGGACAGGACCC+CGG | + | chr1.4:14218862-14218881 | MS.gene32324:intron | 55.0% | |
| TGGTTCCAGTCCAAGTCCGT+GGG | + | chr1.4:14217977-14217996 | MS.gene32324:CDS | 55.0% | |
| TTGGTTCCAGTCCAAGTCCG+TGG | + | chr1.4:14217976-14217995 | MS.gene32324:CDS | 55.0% | |
| TTTGCATTGGACAGGACCCC+GGG | + | chr1.4:14218863-14218882 | MS.gene32324:intron | 55.0% | |
| ! | AGGGCGCAGGATTTTGTGTG+CGG | + | chr1.4:14219309-14219328 | MS.gene32324:CDS | 55.0% |
| ! | CTTCTAGAAGTGGACCCCAC+GGG | + | chr1.4:14219072-14219091 | MS.gene32324:CDS | 55.0% |
| ! | GCTTCTAGAAGTGGACCCCA+CGG | + | chr1.4:14219071-14219090 | MS.gene32324:CDS | 55.0% |
| !! | ACGCTTTTCATCGGCTGCGA+TGG | - | chr1.4:14219019-14219038 | None:intergenic | 55.0% |
| !! | TTGTGTGCGGGTTAGCACCT+AGG | + | chr1.4:14219322-14219341 | MS.gene32324:CDS | 55.0% |
| ATTCGAGCACTTCGCGGCTG+TGG | + | chr1.4:14219179-14219198 | MS.gene32324:CDS | 60.0% | |
| CCACATATGCGCGCAAGCAC+TGG | - | chr1.4:14218994-14219013 | None:intergenic | 60.0% | |
| CCAGTGCTTGCGCGCATATG+TGG | + | chr1.4:14218991-14219010 | MS.gene32324:CDS | 60.0% | |
| GGCTGCCAGCATTGTTCCAC+TGG | - | chr1.4:14217768-14217787 | None:intergenic | 60.0% | |
| GGTCCTTCGTGCGATCACGA+AGG | - | chr1.4:14217851-14217870 | None:intergenic | 60.0% | |
| TGGCTAGCATTGCTCCCGTG+GGG | - | chr1.4:14219089-14219108 | None:intergenic | 60.0% | |
| ! | GGGCGCAGGATTTTGTGTGC+GGG | + | chr1.4:14219310-14219329 | MS.gene32324:CDS | 60.0% |
| AACGGCCCACGGACTTGGAC+TGG | - | chr1.4:14217985-14218004 | None:intergenic | 65.0% | |
| GTCCAAACGGCCCACGGACT+TGG | - | chr1.4:14217990-14218009 | None:intergenic | 65.0% | |
| GTCCAAGTCCGTGGGCCGTT+TGG | + | chr1.4:14217985-14218004 | MS.gene32324:CDS | 65.0% | |
| GTCCGTGGGCCGTTTGGACA+CGG | + | chr1.4:14217991-14218010 | MS.gene32324:CDS | 65.0% | |
| TCCGTGGGCCGTTTGGACAC+GGG | + | chr1.4:14217992-14218011 | MS.gene32324:CDS | 65.0% | |
| ! | GGGTGAGGGAAAAAGGGCGC+AGG | + | chr1.4:14219296-14219315 | MS.gene32324:CDS | 65.0% |
| GCCCGTGTCCAAACGGCCCA+CGG | - | chr1.4:14217996-14218015 | None:intergenic | 70.0% | |
| GGGCCGTTTGGACACGGGCT+TGG | + | chr1.4:14217997-14218016 | MS.gene32324:CDS | 70.0% | |
| GCGGCTGTGGCACAGCGCAC+CGG | + | chr1.4:14219192-14219211 | MS.gene32324:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 14217690 | 14219443 | 14217690 | ID=MS.gene32324 |
| chr1.4 | mRNA | 14217690 | 14219443 | 14217690 | ID=MS.gene32324.t1;Parent=MS.gene32324 |
| chr1.4 | exon | 14217690 | 14218133 | 14217690 | ID=MS.gene32324.t1.exon1;Parent=MS.gene32324.t1 |
| chr1.4 | CDS | 14217690 | 14218133 | 14217690 | ID=cds.MS.gene32324.t1;Parent=MS.gene32324.t1 |
| chr1.4 | exon | 14218877 | 14219443 | 14218877 | ID=MS.gene32324.t1.exon2;Parent=MS.gene32324.t1 |
| chr1.4 | CDS | 14218877 | 14219443 | 14218877 | ID=cds.MS.gene32324.t1;Parent=MS.gene32324.t1 |
| Gene Sequence |
| Protein sequence |
