AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026689

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026689.t1 MTR_1g029150 99.107 336 3 0 1 336 55 390 0.0 696
MS.gene026689.t1 MTR_3g090100 75.595 336 79 1 1 336 34 366 0.0 543
MS.gene026689.t1 MTR_3g090010 75.150 334 80 1 1 334 38 368 0.0 530
MS.gene026689.t1 MTR_3g090020 74.107 336 84 1 1 336 34 366 0.0 528
MS.gene026689.t1 MTR_3g089025 72.917 336 88 1 1 336 37 369 0.0 524
MS.gene026689.t1 MTR_5g024130 71.726 336 91 2 1 336 62 393 0.0 519
MS.gene026689.t1 MTR_4g087440 71.726 336 91 2 1 336 62 393 0.0 518
MS.gene026689.t1 MTR_3g090110 47.863 117 38 1 178 294 2 95 1.96e-28 106
MS.gene026689.t1 MTR_3g089980 59.184 98 27 2 197 294 6 90 2.40e-27 103
MS.gene026689.t1 MTR_3g089973 43.357 143 37 2 178 320 2 100 2.22e-21 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026689.t1 AT1G43800 80.597 335 64 1 1 334 55 389 0.0 578
MS.gene026689.t1 AT3G02630 71.257 334 93 2 1 334 64 394 0.0 513
MS.gene026689.t1 AT2G43710 70.536 336 95 2 1 336 70 401 0.0 507
MS.gene026689.t1 AT2G43710 70.536 336 95 2 1 336 70 401 0.0 507
MS.gene026689.t1 AT5G16240 68.862 334 101 2 1 334 62 392 3.47e-177 496
MS.gene026689.t1 AT5G16230 67.359 337 108 2 1 336 66 401 2.06e-172 484
MS.gene026689.t1 AT3G02610 68.843 337 99 4 4 336 77 411 2.63e-171 482
MS.gene026689.t1 AT3G02610 68.843 337 99 4 4 336 79 413 2.70e-171 482
MS.gene026689.t1 AT3G02620 67.656 337 103 4 4 336 69 403 1.79e-168 475
MS.gene026689.t1 AT3G02620 67.656 337 103 4 4 336 72 406 1.94e-168 475
MS.gene026689.t1 AT5G16230 66.871 326 106 2 12 336 1 325 4.41e-166 466
MS.gene026689.t1 AT3G02620 66.869 329 103 4 12 336 1 327 6.72e-163 457

Find 97 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGACTTATTTGTATCTTTC+TGG 0.182339 1.2:-15194408 MS.gene026689:CDS
CAATGATTACGCTGATATTT+TGG 0.196546 1.2:-15193032 MS.gene026689:CDS
AAAACTGTTCAGTATCTTAT+TGG 0.203529 1.2:-15194360 MS.gene026689:CDS
GTGTATACAAATCCCAAGTA+TGG 0.240289 1.2:+15193361 None:intergenic
GATTAACGGGTGAGGGAAAA+AGG 0.240677 1.2:-15192970 MS.gene026689:CDS
TGTTGTGTTGGTTGGTGATA+TGG 0.248245 1.2:-15194574 MS.gene026689:CDS
GTCCAAGCCCGTGGGCCGTT+TGG 0.332806 1.2:-15194476 MS.gene026689:CDS
TCTTTCTGGAAGGGTTGATA+TGG 0.335225 1.2:-15194394 MS.gene026689:CDS
GTCCAAACGGCCCACGGGCT+TGG 0.340343 1.2:+15194474 None:intergenic
GGCTGCCAGCATTGTTCCAC+TGG 0.386228 1.2:+15194696 None:intergenic
GGGCCGTTTGGACACGGGCT+TGG 0.396447 1.2:-15194464 MS.gene026689:CDS
AACGGCCCACGGGCTTGGAC+TGG 0.398332 1.2:+15194479 None:intergenic
CACATGGGGTCAAGTTTAGT+TGG 0.400607 1.2:-15192865 MS.gene026689:CDS
TTTAATCGAACGGTGGAGAT+TGG 0.401193 1.2:-15193005 MS.gene026689:CDS
ATACAAATGTTGCTCGCTCT+TGG 0.405320 1.2:+15193332 None:intergenic
GACAGAAAACAACCCATACT+TGG 0.410965 1.2:-15193374 MS.gene026689:CDS
GGTTAGCACCTAGGATTAGA+AGG 0.411387 1.2:-15192928 MS.gene026689:CDS
ATTTGATGAATTTACTGATC+AGG 0.419139 1.2:-15194643 MS.gene026689:CDS
TCAAATGGCAATGAAGGATC+AGG 0.420107 1.2:+15194660 None:intergenic
GCGAAGTGCTCGAATAGCTT+AGG 0.427800 1.2:+15193088 None:intergenic
CAAAATATCAGCGTAATCAT+TGG 0.433099 1.2:+15193033 None:intergenic
GCCCGTGGGCCGTTTGGACA+CGG 0.438549 1.2:-15194470 MS.gene026689:CDS
GAAAAGCTTGAAGGATTAAC+GGG 0.453295 1.2:-15192983 MS.gene026689:CDS
TTTGCATTGGACAGGACCCC+GGG 0.454311 1.2:-15193396 MS.gene026689:intron
TGATCAGTAAATTCATCAAA+TGG 0.459663 1.2:+15194645 None:intergenic
ATAGACATGGGGATTTGCTT+AGG 0.460553 1.2:-15194428 MS.gene026689:CDS
GGAAAAGCTTGAAGGATTAA+CGG 0.464892 1.2:-15192984 MS.gene026689:CDS
CCACATATGCGCGCAAGCAC+TGG 0.472837 1.2:+15193268 None:intergenic
ATTCGAGCACTTCGCGGCCG+TGG 0.474737 1.2:-15193080 MS.gene026689:CDS
GTTCAGTATCTTATTGGAGC+TGG 0.477043 1.2:-15194354 MS.gene026689:CDS
AATTCATCAAATGGCAATGA+AGG 0.478762 1.2:+15194654 None:intergenic
CGAAGTGCTCGAATAGCTTA+GGG 0.481594 1.2:+15193089 None:intergenic
TTGTGTGTGGGTTAGCACCT+AGG 0.482074 1.2:-15192937 MS.gene026689:CDS
TCTTGCAACCTTCTAATCCT+AGG 0.486803 1.2:+15192920 None:intergenic
AATGGCTAGCATTGCTCCTG+TGG 0.488560 1.2:+15193171 None:intergenic
AACACAACAAAATACTCATC+AGG 0.489365 1.2:+15194588 None:intergenic
CCGGCACACCTTATGTATGA+TGG 0.493314 1.2:-15193118 MS.gene026689:CDS
GGTCTTGTCCATCATACATA+AGG 0.494290 1.2:+15193110 None:intergenic
TTATTTGTATCTTTCTGGAA+GGG 0.495330 1.2:-15194403 MS.gene026689:CDS
GCCCGTGTCCAAACGGCCCA+CGG 0.499533 1.2:+15194468 None:intergenic
GATGGTGTTGGTGATGAGGT+TGG 0.504177 1.2:-15194504 MS.gene026689:CDS
GCGGCCGTGGCACAGCGCAC+CGG 0.504431 1.2:-15193067 MS.gene026689:CDS
TGGAGATTGGAAAAGCTTGA+AGG 0.504527 1.2:-15192992 MS.gene026689:CDS
ATGGCTAGCATTGCTCCTGT+GGG 0.506752 1.2:+15193172 None:intergenic
CCCGTGGGCCGTTTGGACAC+GGG 0.513039 1.2:-15194469 MS.gene026689:CDS
CCAGTGCTTGCGCGCATATG+TGG 0.513295 1.2:-15193268 MS.gene026689:CDS
AACTCCGGTGCGCTGTGCCA+CGG 0.520106 1.2:+15193063 None:intergenic
TCTTGATGGTGTTGGTGATG+AGG 0.523044 1.2:-15194508 MS.gene026689:CDS
AGTCCAAGCCCGTGTCCAAA+CGG 0.523809 1.2:+15194461 None:intergenic
TAAAGCCAGTGGAACAATGC+TGG 0.530542 1.2:-15194701 MS.gene026689:CDS
TTTCTCCATCATATCACCAA+TGG 0.532359 1.2:+15193153 None:intergenic
GTATCTTATTGGAGCTGGCA+TGG 0.533582 1.2:-15194349 MS.gene026689:intron
TTGGTTCCAGTCCAAGCCCG+TGG 0.534499 1.2:-15194485 MS.gene026689:CDS
TAAGCTATTCGAGCACTTCG+CGG 0.535770 1.2:-15193086 MS.gene026689:CDS
GTTTGCATTGGACAGGACCC+CGG 0.538725 1.2:-15193397 MS.gene026689:intron
GGATTAGAAGGTTGCAAGAG+AGG 0.539517 1.2:-15192916 MS.gene026689:CDS
AGTATGATCAATGGTCTTGA+TGG 0.539669 1.2:-15194522 MS.gene026689:CDS
GCTAGCCATTGGTGATATGA+TGG 0.539965 1.2:-15193158 MS.gene026689:CDS
CTTATTTGTATCTTTCTGGA+AGG 0.544191 1.2:-15194404 MS.gene026689:CDS
CCATCATACATAAGGTGTGC+CGG 0.547215 1.2:+15193118 None:intergenic
TTTCAAATCACTAGAAAACT+GGG 0.554024 1.2:-15194748 MS.gene026689:CDS
CCCGTGTCCAAACGGCCCAC+GGG 0.555548 1.2:+15194469 None:intergenic
TGTTCCACTGGCTTTAGTAG+TGG 0.556461 1.2:+15194708 None:intergenic
ACGGCTCGCTTAGCGAAAGA+AGG 0.562132 1.2:-15193298 MS.gene026689:CDS
ACAGGAGCAATGCTAGCCAT+TGG 0.563098 1.2:-15193169 MS.gene026689:CDS
TGTCGAGAAGCTTCTAGAAG+TGG 0.565382 1.2:-15193197 MS.gene026689:CDS
CTTGAAGGATTAACGGGTGA+GGG 0.586052 1.2:-15192977 MS.gene026689:CDS
TGTATACAAATCCCAAGTAT+GGG 0.587703 1.2:+15193362 None:intergenic
ACGTATCAGAGTATGATCAA+TGG 0.591704 1.2:-15194531 MS.gene026689:CDS
ACAGCGCACCGGAGTTTACA+CGG 0.592150 1.2:-15193056 MS.gene026689:CDS
ATCATTGGCCGTGTAAACTC+CGG 0.595715 1.2:+15193048 None:intergenic
GATTAGAAGGTTGCAAGAGA+GGG 0.596681 1.2:-15192915 MS.gene026689:CDS
ACAGAAAACAACCCATACTT+GGG 0.596760 1.2:-15193373 MS.gene026689:CDS
CTTCTAGAAGTGGACCCCAC+AGG 0.596989 1.2:-15193187 MS.gene026689:CDS
ATCAATGGTCTTGATGGTGT+TGG 0.597547 1.2:-15194516 MS.gene026689:CDS
CAACTAAACTTGACCCCATG+TGG 0.598754 1.2:+15192866 None:intergenic
TGAATTTACTGATCAGGTGA+AGG 0.600944 1.2:-15194637 MS.gene026689:CDS
GTTGGTTGGTGATATGGTGA+CGG 0.602166 1.2:-15194568 MS.gene026689:CDS
GCTTGAAGGATTAACGGGTG+AGG 0.603070 1.2:-15192978 MS.gene026689:CDS
TGGTTCCAGTCCAAGCCCGT+GGG 0.608947 1.2:-15194484 MS.gene026689:CDS
CGAGCAACATTTGTATCACA+CGG 0.621285 1.2:-15193325 MS.gene026689:CDS
ATTTGTATCACACGGAAACA+CGG 0.623224 1.2:-15193317 MS.gene026689:CDS
TTGATCATACTCTGATACGT+CGG 0.624523 1.2:+15194534 None:intergenic
CAAATGGCAATGAAGGATCA+GGG 0.626451 1.2:+15194661 None:intergenic
CAACAAAATACTCATCAGGA+AGG 0.632422 1.2:+15194592 None:intergenic
TGGCTAGCATTGCTCCTGTG+GGG 0.636911 1.2:+15193173 None:intergenic
CTCGTAAGATGAAACCACAT+GGG 0.643536 1.2:-15192880 MS.gene026689:CDS
CTGCTGAAGAAAATAGACAT+GGG 0.645814 1.2:-15194440 MS.gene026689:CDS
GCTCGTAAGATGAAACCACA+TGG 0.658763 1.2:-15192881 MS.gene026689:CDS
TGCTGAAGAAAATAGACATG+GGG 0.668352 1.2:-15194439 MS.gene026689:CDS
ACTGCTGAAGAAAATAGACA+TGG 0.671679 1.2:-15194441 MS.gene026689:CDS
TTTACCACTACTAAAGCCAG+TGG 0.671826 1.2:-15194712 MS.gene026689:CDS
GCTCGCTTAGCGAAAGAAGG+CGG 0.694123 1.2:-15193295 MS.gene026689:CDS
GGTCCTTCGTGCGATCACGA+AGG 0.703598 1.2:+15194613 None:intergenic
GGATCAGGGAGAAAATTCTG+TGG 0.710660 1.2:+15194675 None:intergenic
GGTCCTTCGTGATCGCACGA+AGG 0.710721 1.2:-15194616 MS.gene026689:CDS
TCGTAAGATGAAACCACATG+GGG 0.759922 1.2:-15192879 MS.gene026689:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAAATCTATGAT+AGG - chr1.2:15193696-15193715 MS.gene026689:intron 10.0%
!! AAAAAAATAAATCTATGATA+GGG - chr1.2:15193697-15193716 MS.gene026689:intron 10.0%
!! AAGAAAATAATTAGATAAAT+TGG - chr1.2:15193366-15193385 MS.gene026689:CDS 10.0%
!!! AGATTTATTTTTTTTTTTGA+GGG + chr1.2:15193691-15193710 None:intergenic 10.0%
!!! TAGATTTATTTTTTTTTTTG+AGG + chr1.2:15193692-15193711 None:intergenic 10.0%
!! CATATTATTAATTAAAGTGA+TGG - chr1.2:15193403-15193422 MS.gene026689:intron 15.0%
!!! TTTTTTACTTTCTAACTAAA+TGG - chr1.2:15194150-15194169 MS.gene026689:intron 15.0%
!! ATATGATCTATACTAGTTAA+TGG + chr1.2:15193644-15193663 None:intergenic 20.0%
!! CAAAAAAAAAAAAAAAACCG+AGG + chr1.2:15193755-15193774 None:intergenic 20.0%
!! TTGAAAAAATATAGAATCCT+CGG - chr1.2:15193772-15193791 MS.gene026689:intron 20.0%
!!! AATTGATTTTTCATGTGTTA+CGG - chr1.2:15194112-15194131 MS.gene026689:intron 20.0%
!!! TAGTTGGATTTTTAATAATG+AGG - chr1.2:15194760-15194779 MS.gene026689:CDS 20.0%
! AAAACTGTTCAGTATCTTAT+TGG - chr1.2:15193249-15193268 MS.gene026689:CDS 25.0%
! ACTACTTAGAAGAAAAGTTT+CGG + chr1.2:15194032-15194051 None:intergenic 25.0%
! ATCTATCTAAATAGAATCCT+CGG - chr1.2:15193735-15193754 MS.gene026689:intron 25.0%
! ATTTGATGAATTTACTGATC+AGG - chr1.2:15192966-15192985 MS.gene026689:CDS 25.0%
! CAAAACAGAACATTATGTTT+CGG + chr1.2:15193852-15193871 None:intergenic 25.0%
! TCATGTTACATAAAAGTGAT+GGG + chr1.2:15193921-15193940 None:intergenic 25.0%
! TGATCAGTAAATTCATCAAA+TGG + chr1.2:15192967-15192986 None:intergenic 25.0%
! TTCATGTTACATAAAAGTGA+TGG + chr1.2:15193922-15193941 None:intergenic 25.0%
! TTTCAAATCACTAGAAAACT+GGG - chr1.2:15192861-15192880 MS.gene026689:CDS 25.0%
!! ACTTTTATGTAACATGAATG+AGG - chr1.2:15193924-15193943 MS.gene026689:intron 25.0%
!! GTAGACATTATTTTCAACTT+AGG + chr1.2:15194182-15194201 None:intergenic 25.0%
!! TGTACATTTTATTGCAATCT+AGG - chr1.2:15193337-15193356 MS.gene026689:CDS 25.0%
!! TTATTTGTATCTTTCTGGAA+GGG - chr1.2:15193206-15193225 MS.gene026689:CDS 25.0%
!! TTTTCAAATCACTAGAAAAC+TGG - chr1.2:15192860-15192879 MS.gene026689:CDS 25.0%
!!! AATTGATTTTTCACATGTGT+GGG - chr1.2:15194076-15194095 MS.gene026689:intron 25.0%
!!! GAATGCTCTGTTTTTTTTTT+TGG - chr1.2:15193825-15193844 MS.gene026689:intron 25.0%
!!! TAATTGATTTTTCACATGTG+TGG - chr1.2:15194075-15194094 MS.gene026689:intron 25.0%
!!! TTGAAAATTTCTAGCTTTTC+TGG + chr1.2:15192847-15192866 None:intergenic 25.0%
!!! TTTTGGAGTTTTTAATCGAA+CGG - chr1.2:15194594-15194613 MS.gene026689:CDS 25.0%
AACACAACAAAATACTCATC+AGG + chr1.2:15193024-15193043 None:intergenic 30.0%
AATTCATCAAATGGCAATGA+AGG + chr1.2:15192958-15192977 None:intergenic 30.0%
AGGACTTATTTGTATCTTTC+TGG - chr1.2:15193201-15193220 MS.gene026689:CDS 30.0%
ATGTTACATAAAAGTGATGG+GGG + chr1.2:15193919-15193938 None:intergenic 30.0%
CAAAATATCAGCGTAATCAT+TGG + chr1.2:15194579-15194598 None:intergenic 30.0%
CATGTTACATAAAAGTGATG+GGG + chr1.2:15193920-15193939 None:intergenic 30.0%
CTTATTTGTATCTTTCTGGA+AGG - chr1.2:15193205-15193224 MS.gene026689:CDS 30.0%
TGTATACAAATCCCAAGTAT+GGG + chr1.2:15194250-15194269 None:intergenic 30.0%
! CAATGATTACGCTGATATTT+TGG - chr1.2:15194577-15194596 MS.gene026689:CDS 30.0%
! GCAACATTGTAATTTGTAAG+AGG + chr1.2:15193618-15193637 None:intergenic 30.0%
!! ACATTGCATTTTGTTTGCAT+TGG - chr1.2:15194200-15194219 MS.gene026689:intron 30.0%
!! TGATGAGTATTTTGTTGTGT+TGG - chr1.2:15193023-15193042 MS.gene026689:CDS 30.0%
!! TTAAAGTGATGGATAGTAGT+AGG - chr1.2:15193414-15193433 MS.gene026689:intron 30.0%
!!! AAAATTTCTAGCTTTTCTGG+TGG + chr1.2:15192844-15192863 None:intergenic 30.0%
ACAGAAAACAACCCATACTT+GGG - chr1.2:15194236-15194255 MS.gene026689:intron 35.0%
ACGTATCAGAGTATGATCAA+TGG - chr1.2:15193078-15193097 MS.gene026689:CDS 35.0%
ACTGCTGAAGAAAATAGACA+TGG - chr1.2:15193168-15193187 MS.gene026689:CDS 35.0%
ATTTGTATCACACGGAAACA+CGG - chr1.2:15194292-15194311 MS.gene026689:intron 35.0%
CAACAAAATACTCATCAGGA+AGG + chr1.2:15193020-15193039 None:intergenic 35.0%
CTGCTGAAGAAAATAGACAT+GGG - chr1.2:15193169-15193188 MS.gene026689:CDS 35.0%
GAAAAGCTTGAAGGATTAAC+GGG - chr1.2:15194626-15194645 MS.gene026689:CDS 35.0%
GGAAAAGCTTGAAGGATTAA+CGG - chr1.2:15194625-15194644 MS.gene026689:CDS 35.0%
GGAGAAAAAAATCACAATGC+CGG - chr1.2:15194472-15194491 MS.gene026689:CDS 35.0%
GTGTATACAAATCCCAAGTA+TGG + chr1.2:15194251-15194270 None:intergenic 35.0%
TGAATTTACTGATCAGGTGA+AGG - chr1.2:15192972-15192991 MS.gene026689:CDS 35.0%
TGCTGAAGAAAATAGACATG+GGG - chr1.2:15193170-15193189 MS.gene026689:CDS 35.0%
TTGATCATACTCTGATACGT+CGG + chr1.2:15193078-15193097 None:intergenic 35.0%
TTTCTCCATCATATCACCAA+TGG + chr1.2:15194459-15194478 None:intergenic 35.0%
! AGTATGATCAATGGTCTTGA+TGG - chr1.2:15193087-15193106 MS.gene026689:CDS 35.0%
!! GAGTATTTTGTTGTGTTGGT+TGG - chr1.2:15193027-15193046 MS.gene026689:CDS 35.0%
ATACAAATGTTGCTCGCTCT+TGG + chr1.2:15194280-15194299 None:intergenic 40.0%
CAAATGGCAATGAAGGATCA+GGG + chr1.2:15192951-15192970 None:intergenic 40.0%
CGAGCAACATTTGTATCACA+CGG - chr1.2:15194284-15194303 MS.gene026689:intron 40.0%
CTCGTAAGATGAAACCACAT+GGG - chr1.2:15194729-15194748 MS.gene026689:CDS 40.0%
GACAGAAAACAACCCATACT+TGG - chr1.2:15194235-15194254 MS.gene026689:intron 40.0%
GATTAGAAGGTTGCAAGAGA+GGG - chr1.2:15194694-15194713 MS.gene026689:CDS 40.0%
GTTCAGTATCTTATTGGAGC+TGG - chr1.2:15193255-15193274 MS.gene026689:CDS 40.0%
TCAAATGGCAATGAAGGATC+AGG + chr1.2:15192952-15192971 None:intergenic 40.0%
TCGTAAGATGAAACCACATG+GGG - chr1.2:15194730-15194749 MS.gene026689:CDS 40.0%
TCTTGCAACCTTCTAATCCT+AGG + chr1.2:15194692-15194711 None:intergenic 40.0%
TGGAGATTGGAAAAGCTTGA+AGG - chr1.2:15194617-15194636 MS.gene026689:CDS 40.0%
TTTAATCGAACGGTGGAGAT+TGG - chr1.2:15194604-15194623 MS.gene026689:CDS 40.0%
TTTACCACTACTAAAGCCAG+TGG - chr1.2:15192897-15192916 MS.gene026689:CDS 40.0%
! ATAGACATGGGGATTTGCTT+AGG - chr1.2:15193181-15193200 MS.gene026689:CDS 40.0%
! ATTAACGGGTGAGGGAAAAA+GGG - chr1.2:15194640-15194659 MS.gene026689:CDS 40.0%
! GGTCTTGTCCATCATACATA+AGG + chr1.2:15194502-15194521 None:intergenic 40.0%
! GTTCTCATGACGCTTTTCAT+CGG + chr1.2:15194378-15194397 None:intergenic 40.0%
! TGGAGTTTTTAATCGAACGG+TGG - chr1.2:15194597-15194616 MS.gene026689:CDS 40.0%
!! ATCAATGGTCTTGATGGTGT+TGG - chr1.2:15193093-15193112 MS.gene026689:CDS 40.0%
!! GCATTTTGTTTGCATTGGAC+AGG - chr1.2:15194205-15194224 MS.gene026689:intron 40.0%
!! GGATAGTAGTAGGAGTGTTT+AGG - chr1.2:15193424-15193443 MS.gene026689:intron 40.0%
!! TAGTAGTAGGAGTGTTTAGG+TGG - chr1.2:15193427-15193446 MS.gene026689:intron 40.0%
!! TCTTTCTGGAAGGGTTGATA+TGG - chr1.2:15193215-15193234 MS.gene026689:CDS 40.0%
!! TGTTGTGTTGGTTGGTGATA+TGG - chr1.2:15193035-15193054 MS.gene026689:CDS 40.0%
ATCATTGGCCGTGTAAACTC+CGG + chr1.2:15194564-15194583 None:intergenic 45.0%
CAACATATGCGATCAAACCG+AGG + chr1.2:15193792-15193811 None:intergenic 45.0%
CAACTAAACTTGACCCCATG+TGG + chr1.2:15194746-15194765 None:intergenic 45.0%
CACATGGGGTCAAGTTTAGT+TGG - chr1.2:15194744-15194763 MS.gene026689:CDS 45.0%
CCATCATACATAAGGTGTGC+CGG + chr1.2:15194494-15194513 None:intergenic 45.0%
GCTCGTAAGATGAAACCACA+TGG - chr1.2:15194728-15194747 MS.gene026689:CDS 45.0%
GGATCAGGGAGAAAATTCTG+TGG + chr1.2:15192937-15192956 None:intergenic 45.0%
GGATTAGAAGGTTGCAAGAG+AGG - chr1.2:15194693-15194712 MS.gene026689:CDS 45.0%
GGTTAGCACCTAGGATTAGA+AGG - chr1.2:15194681-15194700 MS.gene026689:CDS 45.0%
GTATCTTATTGGAGCTGGCA+TGG - chr1.2:15193260-15193279 MS.gene026689:CDS 45.0%
TAAAGCCAGTGGAACAATGC+TGG - chr1.2:15192908-15192927 MS.gene026689:CDS 45.0%
TAAGCTATTCGAGCACTTCG+CGG - chr1.2:15194523-15194542 MS.gene026689:CDS 45.0%
! CGAAGTGCTCGAATAGCTTA+GGG + chr1.2:15194523-15194542 None:intergenic 45.0%
! CTTGAAGGATTAACGGGTGA+GGG - chr1.2:15194632-15194651 MS.gene026689:CDS 45.0%
! GATTAACGGGTGAGGGAAAA+AGG - chr1.2:15194639-15194658 MS.gene026689:CDS 45.0%
! GCTAGCCATTGGTGATATGA+TGG - chr1.2:15194451-15194470 MS.gene026689:CDS 45.0%
! TGTCGAGAAGCTTCTAGAAG+TGG - chr1.2:15194412-15194431 MS.gene026689:CDS 45.0%
!! GTATGGGTTGTTTTCTGTCC+CGG + chr1.2:15194234-15194253 None:intergenic 45.0%
!! GTTGGTTGGTGATATGGTGA+CGG - chr1.2:15193041-15193060 MS.gene026689:CDS 45.0%
!! TATGGGTTGTTTTCTGTCCC+GGG + chr1.2:15194233-15194252 None:intergenic 45.0%
!! TCTTGATGGTGTTGGTGATG+AGG - chr1.2:15193101-15193120 MS.gene026689:CDS 45.0%
!! TGTTCCACTGGCTTTAGTAG+TGG + chr1.2:15192904-15192923 None:intergenic 45.0%
!!! TTTAATTTCATTTAATATTT+TGG - chr1.2:15193303-15193322 MS.gene026689:CDS 5.0%
AATGGCTAGCATTGCTCCTG+TGG + chr1.2:15194441-15194460 None:intergenic 50.0%
ACAGGAGCAATGCTAGCCAT+TGG - chr1.2:15194440-15194459 MS.gene026689:CDS 50.0%
ATGGCTAGCATTGCTCCTGT+GGG + chr1.2:15194440-15194459 None:intergenic 50.0%
CCGGCACACCTTATGTATGA+TGG - chr1.2:15194491-15194510 MS.gene026689:CDS 50.0%
! GCGAAGTGCTCGAATAGCTT+AGG + chr1.2:15194524-15194543 None:intergenic 50.0%
! GCTTGAAGGATTAACGGGTG+AGG - chr1.2:15194631-15194650 MS.gene026689:CDS 50.0%
!! ATGGGTTGTTTTCTGTCCCG+GGG + chr1.2:15194232-15194251 None:intergenic 50.0%
!! GATGGTGTTGGTGATGAGGT+TGG - chr1.2:15193105-15193124 MS.gene026689:CDS 50.0%
!! TTGTGTGTGGGTTAGCACCT+AGG - chr1.2:15194672-15194691 MS.gene026689:CDS 50.0%
ACAGCGCACCGGAGTTTACA+CGG - chr1.2:15194553-15194572 MS.gene026689:CDS 55.0%
ACGGCTCGCTTAGCGAAAGA+AGG - chr1.2:15194311-15194330 MS.gene026689:intron 55.0%
AGTCCAAGCCCGTGTCCAAA+CGG + chr1.2:15193151-15193170 None:intergenic 55.0%
GCTCGCTTAGCGAAAGAAGG+CGG - chr1.2:15194314-15194333 MS.gene026689:intron 55.0%
GTTTGCATTGGACAGGACCC+CGG - chr1.2:15194212-15194231 MS.gene026689:intron 55.0%
TGGCTAGCATTGCTCCTGTG+GGG + chr1.2:15194439-15194458 None:intergenic 55.0%
TTTGCATTGGACAGGACCCC+GGG - chr1.2:15194213-15194232 MS.gene026689:intron 55.0%
! AGGGCGCAGGATTTTGTGTG+TGG - chr1.2:15194659-15194678 MS.gene026689:CDS 55.0%
! CTTCTAGAAGTGGACCCCAC+AGG - chr1.2:15194422-15194441 MS.gene026689:CDS 55.0%
! GGGCGCAGGATTTTGTGTGT+GGG - chr1.2:15194660-15194679 MS.gene026689:CDS 55.0%
!! ACGCTTTTCATCGGCTGCGA+TGG + chr1.2:15194369-15194388 None:intergenic 55.0%
CCACATATGCGCGCAAGCAC+TGG + chr1.2:15194344-15194363 None:intergenic 60.0%
CCAGTGCTTGCGCGCATATG+TGG - chr1.2:15194341-15194360 MS.gene026689:intron 60.0%
GGCTGCCAGCATTGTTCCAC+TGG + chr1.2:15192916-15192935 None:intergenic 60.0%
GGTCCTTCGTGATCGCACGA+AGG - chr1.2:15192993-15193012 MS.gene026689:CDS 60.0%
GGTCCTTCGTGCGATCACGA+AGG + chr1.2:15192999-15193018 None:intergenic 60.0%
TGGTTCCAGTCCAAGCCCGT+GGG - chr1.2:15193125-15193144 MS.gene026689:CDS 60.0%
TTGGTTCCAGTCCAAGCCCG+TGG - chr1.2:15193124-15193143 MS.gene026689:CDS 60.0%
AACTCCGGTGCGCTGTGCCA+CGG + chr1.2:15194549-15194568 None:intergenic 65.0%
ATTCGAGCACTTCGCGGCCG+TGG - chr1.2:15194529-15194548 MS.gene026689:CDS 65.0%
! GGGTGAGGGAAAAAGGGCGC+AGG - chr1.2:15194646-15194665 MS.gene026689:CDS 65.0%
AACGGCCCACGGGCTTGGAC+TGG + chr1.2:15193133-15193152 None:intergenic 70.0%
CCCGTGGGCCGTTTGGACAC+GGG - chr1.2:15193140-15193159 MS.gene026689:CDS 70.0%
CCCGTGTCCAAACGGCCCAC+GGG + chr1.2:15193143-15193162 None:intergenic 70.0%
GCCCGTGGGCCGTTTGGACA+CGG - chr1.2:15193139-15193158 MS.gene026689:CDS 70.0%
GCCCGTGTCCAAACGGCCCA+CGG + chr1.2:15193144-15193163 None:intergenic 70.0%
GGGCCGTTTGGACACGGGCT+TGG - chr1.2:15193145-15193164 MS.gene026689:CDS 70.0%
GTCCAAACGGCCCACGGGCT+TGG + chr1.2:15193138-15193157 None:intergenic 70.0%
GTCCAAGCCCGTGGGCCGTT+TGG - chr1.2:15193133-15193152 MS.gene026689:CDS 70.0%
! GCGGCCGTGGCACAGCGCAC+CGG - chr1.2:15194542-15194561 MS.gene026689:CDS 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 15192838 15194793 15192838 ID=MS.gene026689
chr1.2 mRNA 15192838 15194793 15192838 ID=MS.gene026689.t1;Parent=MS.gene026689
chr1.2 exon 15194350 15194793 15194350 ID=MS.gene026689.t1.exon1;Parent=MS.gene026689.t1
chr1.2 CDS 15194350 15194793 15194350 ID=cds.MS.gene026689.t1;Parent=MS.gene026689.t1
chr1.2 exon 15192838 15193404 15192838 ID=MS.gene026689.t1.exon2;Parent=MS.gene026689.t1
chr1.2 CDS 15192838 15193404 15192838 ID=cds.MS.gene026689.t1;Parent=MS.gene026689.t1
Gene Sequence

>MS.gene026689

ATGCCACCAGAAAAGCTAGAAATTTTCAAATCACTAGAAAACTGGGCTTCTGAGTCTGTTTTACCACTACTAAAGCCAGTGGAACAATGCTGGCAGCCACAGAATTTTCTCCCTGATCCTTCATTGCCATTTGATGAATTTACTGATCAGGTGAAGGTCCTTCGTGATCGCACGAAGGACCTTCCTGATGAGTATTTTGTTGTGTTGGTTGGTGATATGGTGACGGAAGACGCACTTCCGACGTATCAGAGTATGATCAATGGTCTTGATGGTGTTGGTGATGAGGTTGGTTCCAGTCCAAGCCCGTGGGCCGTTTGGACACGGGCTTGGACTGCTGAAGAAAATAGACATGGGGATTTGCTTAGGACTTATTTGTATCTTTCTGGAAGGGTTGATATGGAGATGATTGAGAAAACTGTTCAGTATCTTATTGGAGCTGGCATGGTGAGATTTTCTTCTATTTTTTTTAATTTCATTTAATATTTTGGAAAATTTGTTGTGTACATTTTATTGCAATCTAGGATGCTTAAGAAAATAATTAGATAAATTGGTTAGCTAAATTATTCATATTATTAATTAAAGTGATGGATAGTAGTAGGAGTGTTTAGGTGGATTATATTAAAATAATTAAAGTAATATTAATGAAAATGTTGTCTTGACATTTTTGATAAAAAAAAAAAATGAGACTTCTTTTGAAAAATGTATTTATAAGAATACAAAATGTAGTTAATACTATGCATATTATGTATTGAAATTAATTTGTATCATTGCTTTTGTCCTCTTACAAATTACAATGTTGCTTTCCATTAACTAGTATAGATCATATAATTAAAAATAAATCTTTTTTTTTCCCTCAAAAAAAAAAATAAATCTATGATAGGGAAATTATGTTTTCATATCTATCTAAATAGAATCCTCGGTTTTTTTTTTTTTTTTGAAAAAATATAGAATCCTCGGTTTGATCGCATATGTTGTCATTTGATCACAGAATGCTCTGTTTTTTTTTTTGGACCGAAACATAATGTTCTGTTTTGAAATAATGTTAGTGAAATAGTTTTGTACAAAATTTAATCATTAACCCCCATCACTTTTATGTAACATGAATGAGGTGATCTTTTAAATTTCAACAGATTAATTTTTTTTATAAATTAATATGATTATACAATTCATTTTGATTGAGCATAAAAAATGCCGAAACTTTTCTTCTAAGTAGTATGTTATTATATGAAACAGAAATTAATTGATTTTTCACATGTGTGGGAGTTTAAACACATAATTGATTTTTCATGTGTTACGGTTTTTTCATTGTTTATTTTTTACTTTCTAACTAAATGGATTAATCCTAAGTTGAAAATAATGTCTACATTGCATTTTGTTTGCATTGGACAGGACCCCGGGACAGAAAACAACCCATACTTGGGATTTGTATACACATCATTCCAAGAGCGAGCAACATTTGTATCACACGGAAACACGGCTCGCTTAGCGAAAGAAGGCGGTGATCCAGTGCTTGCGCGCATATGTGGTACCATCGCAGCCGATGAAAAGCGTCATGAGAACGCATACTCAAAAATTGTCGAGAAGCTTCTAGAAGTGGACCCCACAGGAGCAATGCTAGCCATTGGTGATATGATGGAGAAAAAAATCACAATGCCGGCACACCTTATGTATGATGGACAAGACCCTAAGCTATTCGAGCACTTCGCGGCCGTGGCACAGCGCACCGGAGTTTACACGGCCAATGATTACGCTGATATTTTGGAGTTTTTAATCGAACGGTGGAGATTGGAAAAGCTTGAAGGATTAACGGGTGAGGGAAAAAGGGCGCAGGATTTTGTGTGTGGGTTAGCACCTAGGATTAGAAGGTTGCAAGAGAGGGCTGATGCACGTGCTCGTAAGATGAAACCACATGGGGTCAAGTTTAGTTGGATTTTTAATAATGAGGTTGTTTTGTGA
Protein sequence

>MS.gene026689.t1

MPPEKLEIFKSLENWASESVLPLLKPVEQCWQPQNFLPDPSLPFDEFTDQVKVLRDRTKDLPDEYFVVLVGDMVTEDALPTYQSMINGLDGVGDEVGSSPSPWAVWTRAWTAEENRHGDLLRTYLYLSGRVDMEMIEKTVQYLIGAGMDPGTENNPYLGFVYTSFQERATFVSHGNTARLAKEGGDPVLARICGTIAADEKRHENAYSKIVEKLLEVDPTGAMLAIGDMMEKKITMPAHLMYDGQDPKLFEHFAAVAQRTGVYTANDYADILEFLIERWRLEKLEGLTGEGKRAQDFVCGLAPRIRRLQERADARARKMKPHGVKFSWIFNNEVVL